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Network neighborhood for query Sequence : PKNX2_MOUSE

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PKNX2_MOUSE
SwissProt Accessions	Q8BG99, Q8R4B0	Gene names	Pknox2, Prep2
Domain Architecture	No domain graphic available
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).
Rank Plots	Jump to hits sorted by θ Jump to hits sorted by NC score

Hits sorted by θ

PKNX2_HUMAN
θ value	0 (rank : 1)	NC score	0.992144 (rank : 2)
Query Neighborhood Hits	197	Target Neighborhood Hits	133	Shared Neighborhood Hits	125
SwissProt Accessions	Q96KN3, Q63HL6, Q86XD1	Gene names	PKNOX2, PREP2
Domain Architecture
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

PKNX2_MOUSE
θ value	0 (rank : 2)	NC score	0.999962 (rank : 1)
Query Neighborhood Hits	197	Target Neighborhood Hits	197	Shared Neighborhood Hits	197
SwissProt Accessions	Q8BG99, Q8R4B0	Gene names	Pknox2, Prep2
Domain Architecture	No domain graphic available
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

PKNX1_MOUSE
θ value	8.9516e-133 (rank : 3)	NC score	0.977256 (rank : 3)
Query Neighborhood Hits	197	Target Neighborhood Hits	103	Shared Neighborhood Hits	86
SwissProt Accessions	O70477	Gene names	Pknox1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1).

PKNX1_HUMAN
θ value	3.4016e-132 (rank : 4)	NC score	0.976506 (rank : 4)
Query Neighborhood Hits	197	Target Neighborhood Hits	101	Shared Neighborhood Hits	86
SwissProt Accessions	P55347, O00528, Q8IWT7	Gene names	PKNOX1, PREP1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1) (Homeobox protein PREP-1).

MEIS2_HUMAN
θ value	7.73779e-60 (rank : 5)	NC score	0.906807 (rank : 9)
Query Neighborhood Hits	197	Target Neighborhood Hits	182	Shared Neighborhood Hits	71
SwissProt Accessions	O14770, Q96KI4, Q96KI5, Q9NRS1, Q9NRS2, Q9NRS3	Gene names	MEIS2, MRG1
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

MEIS2_MOUSE
θ value	7.73779e-60 (rank : 6)	NC score	0.903721 (rank : 10)
Query Neighborhood Hits	197	Target Neighborhood Hits	208	Shared Neighborhood Hits	74
SwissProt Accessions	P97367, O35676, O35677, P97403, P97404	Gene names	Meis2, Mrg1, Stra10
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

MEIS1_HUMAN
θ value	3.84025e-59 (rank : 7)	NC score	0.919428 (rank : 8)
Query Neighborhood Hits	197	Target Neighborhood Hits	115	Shared Neighborhood Hits	70
SwissProt Accessions	O00470	Gene names	MEIS1
Domain Architecture
Description	Homeobox protein Meis1.

MEIS1_MOUSE
θ value	3.84025e-59 (rank : 8)	NC score	0.919479 (rank : 7)
Query Neighborhood Hits	197	Target Neighborhood Hits	115	Shared Neighborhood Hits	70
SwissProt Accessions	Q60954, Q5SVC8, Q60955, Q8CIL0	Gene names	Meis1
Domain Architecture
Description	Homeobox protein Meis1 (Myeloid ecotropic viral integration site 1).

MEIS3_HUMAN
θ value	9.45883e-58 (rank : 9)	NC score	0.920423 (rank : 6)
Query Neighborhood Hits	197	Target Neighborhood Hits	118	Shared Neighborhood Hits	67
SwissProt Accessions	Q99687, Q6NT73, Q8TC66, Q9NPW2	Gene names	MEIS3, MRG2
Domain Architecture	No domain graphic available
Description	Homeobox protein Meis3 (Meis1-related protein 2).

MEIS3_MOUSE
θ value	4.69435e-57 (rank : 10)	NC score	0.922411 (rank : 5)
Query Neighborhood Hits	197	Target Neighborhood Hits	118	Shared Neighborhood Hits	69
SwissProt Accessions	P97368, Q99L81	Gene names	Meis3, Mrg2
Domain Architecture
Description	Homeobox protein Meis3 (Meis1-related protein 2).

TF2LX_HUMAN
θ value	5.25075e-16 (rank : 11)	NC score	0.792844 (rank : 12)
Query Neighborhood Hits	197	Target Neighborhood Hits	108	Shared Neighborhood Hits	77
SwissProt Accessions	Q8IUE1	Gene names	TGIF2LX, TGIFLX
Domain Architecture
Description	Homeobox protein TGIF2LX (TGFB-induced factor 2-like protein, X- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the X).

TF2LY_HUMAN
θ value	1.52774e-15 (rank : 12)	NC score	0.803227 (rank : 11)
Query Neighborhood Hits	197	Target Neighborhood Hits	90	Shared Neighborhood Hits	71
SwissProt Accessions	Q8IUE0	Gene names	TGIF2LY, TGIFLY
Domain Architecture
Description	Homeobox protein TGIF2LY (TGFB-induced factor 2-like protein, Y- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the Y).

TGIF2_HUMAN
θ value	4.44505e-15 (rank : 13)	NC score	0.764015 (rank : 13)
Query Neighborhood Hits	197	Target Neighborhood Hits	94	Shared Neighborhood Hits	64
SwissProt Accessions	Q9GZN2	Gene names	TGIF2
Domain Architecture
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

TGIF2_MOUSE
θ value	4.44505e-15 (rank : 14)	NC score	0.758194 (rank : 14)
Query Neighborhood Hits	197	Target Neighborhood Hits	127	Shared Neighborhood Hits	69
SwissProt Accessions	Q8C0Y1	Gene names	Tgif2
Domain Architecture	No domain graphic available
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

TGIF_HUMAN
θ value	5.8054e-15 (rank : 15)	NC score	0.749001 (rank : 16)
Query Neighborhood Hits	197	Target Neighborhood Hits	109	Shared Neighborhood Hits	66
SwissProt Accessions	Q15583, Q6ICR0, Q8N5X9, Q9NRS0	Gene names	TGIF
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

TGIF_MOUSE
θ value	9.90251e-15 (rank : 16)	NC score	0.758104 (rank : 15)
Query Neighborhood Hits	197	Target Neighborhood Hits	125	Shared Neighborhood Hits	74
SwissProt Accessions	P70284, Q921F9, Q99JS3	Gene names	Tgif
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

PBX3_HUMAN
θ value	2.52405e-10 (rank : 17)	NC score	0.533767 (rank : 35)
Query Neighborhood Hits	197	Target Neighborhood Hits	306	Shared Neighborhood Hits	92
SwissProt Accessions	P40426, Q96PF9, Q96PG0	Gene names	PBX3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX3_MOUSE
θ value	2.52405e-10 (rank : 18)	NC score	0.533800 (rank : 34)
Query Neighborhood Hits	197	Target Neighborhood Hits	306	Shared Neighborhood Hits	92
SwissProt Accessions	O35317, Q925W2	Gene names	Pbx3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX2_HUMAN
θ value	3.64472e-09 (rank : 19)	NC score	0.536893 (rank : 30)
Query Neighborhood Hits	197	Target Neighborhood Hits	350	Shared Neighborhood Hits	100
SwissProt Accessions	P40425	Gene names	PBX2, G17
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2) (Protein G17).

PBX2_MOUSE
θ value	3.64472e-09 (rank : 20)	NC score	0.536788 (rank : 31)
Query Neighborhood Hits	197	Target Neighborhood Hits	341	Shared Neighborhood Hits	100
SwissProt Accessions	O35984	Gene names	Pbx2
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2).

PBX1_HUMAN
θ value	8.11959e-09 (rank : 21)	NC score	0.534466 (rank : 32)
Query Neighborhood Hits	197	Target Neighborhood Hits	317	Shared Neighborhood Hits	101
SwissProt Accessions	P40424	Gene names	PBX1, PRL
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1) (Homeobox protein PRL).

PBX1_MOUSE
θ value	8.11959e-09 (rank : 22)	NC score	0.534466 (rank : 33)
Query Neighborhood Hits	197	Target Neighborhood Hits	317	Shared Neighborhood Hits	101
SwissProt Accessions	P41778	Gene names	Pbx1, Pbx-1
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1).

PBX4_MOUSE
θ value	1.06045e-08 (rank : 23)	NC score	0.553754 (rank : 25)
Query Neighborhood Hits	197	Target Neighborhood Hits	324	Shared Neighborhood Hits	99
SwissProt Accessions	Q99NE9, Q8CFL2, Q99NE8	Gene names	Pbx4
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 4 (Homeobox protein PBX4).

IRX6_MOUSE
θ value	1.38499e-08 (rank : 24)	NC score	0.563338 (rank : 23)
Query Neighborhood Hits	197	Target Neighborhood Hits	256	Shared Neighborhood Hits	88
SwissProt Accessions	Q9ER75	Gene names	Irx6, Irxb3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

IRX4_HUMAN
θ value	1.80886e-08 (rank : 25)	NC score	0.565026 (rank : 17)
Query Neighborhood Hits	197	Target Neighborhood Hits	276	Shared Neighborhood Hits	91
SwissProt Accessions	P78413, Q9UHR2	Gene names	IRX4, IRXA3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

IRX4_MOUSE
θ value	1.80886e-08 (rank : 26)	NC score	0.561477 (rank : 24)
Query Neighborhood Hits	197	Target Neighborhood Hits	286	Shared Neighborhood Hits	91
SwissProt Accessions	Q9QY61	Gene names	Irx4, Irxa3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

IRX1_HUMAN
θ value	5.26297e-08 (rank : 27)	NC score	0.565013 (rank : 18)
Query Neighborhood Hits	197	Target Neighborhood Hits	285	Shared Neighborhood Hits	89
SwissProt Accessions	P78414, Q7Z2F8, Q8N312	Gene names	IRX1, IRXA1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

IRX1_MOUSE
θ value	5.26297e-08 (rank : 28)	NC score	0.564260 (rank : 20)
Query Neighborhood Hits	197	Target Neighborhood Hits	269	Shared Neighborhood Hits	88
SwissProt Accessions	P81068, O55120, Q9JLL6	Gene names	Irx1, Irxa1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

IRX3_HUMAN
θ value	5.26297e-08 (rank : 29)	NC score	0.564282 (rank : 19)
Query Neighborhood Hits	197	Target Neighborhood Hits	342	Shared Neighborhood Hits	92
SwissProt Accessions	P78415, Q7Z4A4, Q7Z4A5, Q8IVC6	Gene names	IRX3, IRXB1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

IRX3_MOUSE
θ value	5.26297e-08 (rank : 30)	NC score	0.563785 (rank : 22)
Query Neighborhood Hits	197	Target Neighborhood Hits	303	Shared Neighborhood Hits	86
SwissProt Accessions	P81067	Gene names	Irx3, Irxb1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

IRX2_HUMAN
θ value	6.87365e-08 (rank : 31)	NC score	0.537564 (rank : 29)
Query Neighborhood Hits	197	Target Neighborhood Hits	358	Shared Neighborhood Hits	90
SwissProt Accessions	Q9BZI1, Q7Z2I7	Gene names	IRX2, IRXA2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

IRX2_MOUSE
θ value	6.87365e-08 (rank : 32)	NC score	0.551901 (rank : 26)
Query Neighborhood Hits	197	Target Neighborhood Hits	264	Shared Neighborhood Hits	84
SwissProt Accessions	P81066, O55121, Q9ERN1	Gene names	Irx2, Irxa2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

IRX5_HUMAN
θ value	6.87365e-08 (rank : 33)	NC score	0.545786 (rank : 27)
Query Neighborhood Hits	197	Target Neighborhood Hits	362	Shared Neighborhood Hits	94
SwissProt Accessions	P78411, P78416, Q7Z2E1	Gene names	IRX5, IRX2A, IRXB2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2) (IRX-2A).

IRX5_MOUSE
θ value	6.87365e-08 (rank : 34)	NC score	0.542990 (rank : 28)
Query Neighborhood Hits	197	Target Neighborhood Hits	324	Shared Neighborhood Hits	93
SwissProt Accessions	Q9JKQ4, Q80WV4, Q9JLL5	Gene names	Irx5, Irxb2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2).

IRX6_HUMAN
θ value	6.87365e-08 (rank : 35)	NC score	0.564104 (rank : 21)
Query Neighborhood Hits	197	Target Neighborhood Hits	262	Shared Neighborhood Hits	89
SwissProt Accessions	P78412, Q7Z2K0	Gene names	IRX6, IRX7, IRXB3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

SIX2_HUMAN
θ value	0.000158464 (rank : 36)	NC score	0.419056 (rank : 36)
Query Neighborhood Hits	197	Target Neighborhood Hits	345	Shared Neighborhood Hits	98
SwissProt Accessions	Q9NPC8, Q9BXH7	Gene names	SIX2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

SIX2_MOUSE
θ value	0.000158464 (rank : 37)	NC score	0.418691 (rank : 37)
Query Neighborhood Hits	197	Target Neighborhood Hits	376	Shared Neighborhood Hits	104
SwissProt Accessions	Q62232, P70179	Gene names	Six2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

SIX1_HUMAN
θ value	0.00020696 (rank : 38)	NC score	0.411194 (rank : 39)
Query Neighborhood Hits	197	Target Neighborhood Hits	343	Shared Neighborhood Hits	100
SwissProt Accessions	Q15475, Q96H64	Gene names	SIX1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

SIX1_MOUSE
θ value	0.00020696 (rank : 39)	NC score	0.411670 (rank : 38)
Query Neighborhood Hits	197	Target Neighborhood Hits	341	Shared Neighborhood Hits	100
SwissProt Accessions	Q62231, Q8CIL7	Gene names	Six1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

SIX3_HUMAN
θ value	0.00020696 (rank : 40)	NC score	0.390568 (rank : 42)
Query Neighborhood Hits	197	Target Neighborhood Hits	285	Shared Neighborhood Hits	94
SwissProt Accessions	O95343	Gene names	SIX3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX3_MOUSE
θ value	0.00020696 (rank : 41)	NC score	0.390519 (rank : 43)
Query Neighborhood Hits	197	Target Neighborhood Hits	289	Shared Neighborhood Hits	94
SwissProt Accessions	Q62233, P70176, P70177	Gene names	Six3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX6_HUMAN
θ value	0.00020696 (rank : 42)	NC score	0.391970 (rank : 41)
Query Neighborhood Hits	197	Target Neighborhood Hits	269	Shared Neighborhood Hits	92
SwissProt Accessions	O95475, Q9P1X8	Gene names	SIX6, OPTX2, SIX9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Homeodomain protein OPTX2).

SIX6_MOUSE
θ value	0.00020696 (rank : 43)	NC score	0.392929 (rank : 40)
Query Neighborhood Hits	197	Target Neighborhood Hits	267	Shared Neighborhood Hits	93
SwissProt Accessions	Q9QZ28, O88423	Gene names	Six6, Optx2, Six9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Six9 protein).

SIX5_HUMAN
θ value	0.00035302 (rank : 44)	NC score	0.365077 (rank : 45)
Query Neighborhood Hits	197	Target Neighborhood Hits	386	Shared Neighborhood Hits	102
SwissProt Accessions	Q8N196	Gene names	SIX5, DMAHP
Domain Architecture	No domain graphic available
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein).

SIX5_MOUSE
θ value	0.00035302 (rank : 45)	NC score	0.365208 (rank : 44)
Query Neighborhood Hits	197	Target Neighborhood Hits	354	Shared Neighborhood Hits	95
SwissProt Accessions	P70178	Gene names	Six5, Dmahp
Domain Architecture
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein homolog).

CEP35_HUMAN
θ value	0.00869519 (rank : 46)	NC score	0.044078 (rank : 211)
Query Neighborhood Hits	197	Target Neighborhood Hits	811	Shared Neighborhood Hits	20
SwissProt Accessions	Q5VT06, O75068, Q8TDK3, Q8WY20	Gene names	CEP350, CAP350, GM133
Domain Architecture	No domain graphic available
Description	Centrosome-associated protein 350 (Centrosome-associated protein of 350 kDa).

SIX4_HUMAN
θ value	0.0113563 (rank : 47)	NC score	0.358621 (rank : 46)
Query Neighborhood Hits	197	Target Neighborhood Hits	342	Shared Neighborhood Hits	94
SwissProt Accessions	Q9UIU6	Gene names	SIX4
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4).

SIX4_MOUSE
θ value	0.0113563 (rank : 48)	NC score	0.357424 (rank : 47)
Query Neighborhood Hits	197	Target Neighborhood Hits	341	Shared Neighborhood Hits	94
SwissProt Accessions	Q61321, Q61322, Q61323	Gene names	Six4, Arec3
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4) (Skeletal muscle-specific ARE-binding protein AREC3).

ATBF1_HUMAN
θ value	0.0252991 (rank : 49)	NC score	0.062912 (rank : 140)
Query Neighborhood Hits	197	Target Neighborhood Hits	1547	Shared Neighborhood Hits	112
SwissProt Accessions	Q15911, O15101, Q13719	Gene names	ATBF1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

ATBF1_MOUSE
θ value	0.0252991 (rank : 50)	NC score	0.063171 (rank : 138)
Query Neighborhood Hits	197	Target Neighborhood Hits	1841	Shared Neighborhood Hits	121
SwissProt Accessions	Q61329	Gene names	Atbf1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

ATOH1_HUMAN
θ value	0.0252991 (rank : 51)	NC score	0.044720 (rank : 210)
Query Neighborhood Hits	197	Target Neighborhood Hits	97	Shared Neighborhood Hits	3
SwissProt Accessions	Q92858	Gene names	ATOH1, ATH1
Domain Architecture
Description	Atonal protein homolog 1 (Helix-loop-helix protein hATH-1).

BRD8_MOUSE
θ value	0.0563607 (rank : 52)	NC score	0.038142 (rank : 215)
Query Neighborhood Hits	197	Target Neighborhood Hits	422	Shared Neighborhood Hits	32
SwissProt Accessions	Q8R3B7, Q8C049, Q8R583, Q8VDP0	Gene names	Brd8
Domain Architecture	No domain graphic available
Description	Bromodomain-containing protein 8.

BASP_MOUSE
θ value	0.0736092 (rank : 53)	NC score	0.042921 (rank : 212)
Query Neighborhood Hits	197	Target Neighborhood Hits	260	Shared Neighborhood Hits	9
SwissProt Accessions	Q91XV3	Gene names	Basp1, Nap22
Domain Architecture	No domain graphic available
Description	Brain acid soluble protein 1 (BASP1 protein) (Neuronal axonal membrane protein NAP-22) (22 kDa neuronal tissue-enriched acidic protein).

MINT_MOUSE
θ value	0.0736092 (rank : 54)	NC score	0.038981 (rank : 214)
Query Neighborhood Hits	197	Target Neighborhood Hits	1514	Shared Neighborhood Hits	77
SwissProt Accessions	Q62504, Q80TN9, Q99PS4, Q9QZW2	Gene names	Spen, Kiaa0929, Mint, Sharp
Domain Architecture
Description	Msx2-interacting protein (SPEN homolog) (SMART/HDAC1-associated repressor protein).

DLX6_HUMAN
θ value	0.21417 (rank : 55)	NC score	0.087318 (rank : 61)
Query Neighborhood Hits	197	Target Neighborhood Hits	341	Shared Neighborhood Hits	91
SwissProt Accessions	P56179, Q3ZAR6, Q9UPL2	Gene names	DLX6
Domain Architecture
Description	Homeobox protein DLX-6.

PCQAP_HUMAN
θ value	0.21417 (rank : 56)	NC score	0.037240 (rank : 216)
Query Neighborhood Hits	197	Target Neighborhood Hits	549	Shared Neighborhood Hits	25
SwissProt Accessions	Q96RN5, O15413, Q6IC31, Q8NF16, Q96CT0, Q96IH7, Q9P1T3	Gene names	PCQAP, ARC105, CTG7A, TIG1
Domain Architecture	No domain graphic available
Description	Positive cofactor 2 glutamine/Q-rich-associated protein (PC2 glutamine/Q-rich-associated protein) (TPA-inducible gene 1 protein) (TIG-1) (Activator-recruited cofactor 105 kDa component) (ARC105) (CTG repeat protein 7a).

SOX9_HUMAN
θ value	0.21417 (rank : 57)	NC score	0.019494 (rank : 245)
Query Neighborhood Hits	197	Target Neighborhood Hits	210	Shared Neighborhood Hits	10
SwissProt Accessions	P48436	Gene names	SOX9
Domain Architecture
Description	Transcription factor SOX-9.

WASF1_HUMAN
θ value	0.21417 (rank : 58)	NC score	0.036299 (rank : 219)
Query Neighborhood Hits	197	Target Neighborhood Hits	260	Shared Neighborhood Hits	18
SwissProt Accessions	Q92558	Gene names	WASF1, KIAA0269, SCAR1, WAVE1
Domain Architecture	No domain graphic available
Description	Wiskott-Aldrich syndrome protein family member 1 (WASP-family protein member 1) (Protein WAVE-1) (Verprolin homology domain-containing protein 1).

WASF1_MOUSE
θ value	0.21417 (rank : 59)	NC score	0.036636 (rank : 217)
Query Neighborhood Hits	197	Target Neighborhood Hits	261	Shared Neighborhood Hits	19
SwissProt Accessions	Q8R5H6, Q91W51, Q9ERQ9	Gene names	Wasf1, Wave1
Domain Architecture	No domain graphic available
Description	Wiskott-Aldrich syndrome protein family member 1 (WASP-family protein member 1) (Protein WAVE-1).

CUTL2_MOUSE
θ value	0.279714 (rank : 60)	NC score	0.131439 (rank : 52)
Query Neighborhood Hits	197	Target Neighborhood Hits	771	Shared Neighborhood Hits	73
SwissProt Accessions	P70298	Gene names	Cutl2
Domain Architecture
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

SFR15_HUMAN
θ value	0.279714 (rank : 61)	NC score	0.039608 (rank : 213)
Query Neighborhood Hits	197	Target Neighborhood Hits	368	Shared Neighborhood Hits	22
SwissProt Accessions	O95104, Q6P1M5, Q8N3I8, Q9UFM1, Q9ULP8	Gene names	SFRS15, KIAA1172
Domain Architecture	No domain graphic available
Description	Splicing factor, arginine/serine-rich 15 (CTD-binding SR-like protein RA4).

CSTF2_HUMAN
θ value	0.365318 (rank : 62)	NC score	0.020883 (rank : 237)
Query Neighborhood Hits	197	Target Neighborhood Hits	296	Shared Neighborhood Hits	10
SwissProt Accessions	P33240, Q5H951, Q6LA74, Q8N502	Gene names	CSTF2
Domain Architecture
Description	Cleavage stimulation factor 64 kDa subunit (CSTF 64 kDa subunit) (CF-1 64 kDa subunit) (CstF-64).

ONEC2_HUMAN
θ value	0.365318 (rank : 63)	NC score	0.168549 (rank : 48)
Query Neighborhood Hits	197	Target Neighborhood Hits	115	Shared Neighborhood Hits	42
SwissProt Accessions	O95948	Gene names	ONECUT2
Domain Architecture
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

ONEC2_MOUSE
θ value	0.365318 (rank : 64)	NC score	0.166474 (rank : 49)
Query Neighborhood Hits	197	Target Neighborhood Hits	123	Shared Neighborhood Hits	43
SwissProt Accessions	Q6XBJ3	Gene names	Onecut2, Oc2
Domain Architecture	No domain graphic available
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

PCQAP_MOUSE
θ value	0.365318 (rank : 65)	NC score	0.035446 (rank : 220)
Query Neighborhood Hits	197	Target Neighborhood Hits	506	Shared Neighborhood Hits	22
SwissProt Accessions	Q924H2	Gene names	Pcqap
Domain Architecture	No domain graphic available
Description	Positive cofactor 2 glutamine/Q-rich-associated protein (PC2 glutamine/Q-rich-associated protein) (mPcqap).

PDC6I_MOUSE
θ value	0.47712 (rank : 66)	NC score	0.021833 (rank : 236)
Query Neighborhood Hits	197	Target Neighborhood Hits	275	Shared Neighborhood Hits	14
SwissProt Accessions	Q9WU78, O88695, O89014, Q8BSL8, Q8R0H5, Q99LR3, Q9QZN8	Gene names	Pdcd6ip, Aip1, Alix
Domain Architecture
Description	Programmed cell death 6-interacting protein (ALG-2-interacting protein X) (ALG-2-interacting protein 1) (E2F1-inducible protein) (Eig2).

WASIP_MOUSE
θ value	0.47712 (rank : 67)	NC score	0.034066 (rank : 221)
Query Neighborhood Hits	197	Target Neighborhood Hits	392	Shared Neighborhood Hits	25
SwissProt Accessions	Q8K1I7, Q3U0U8	Gene names	Waspip, Wip
Domain Architecture	No domain graphic available
Description	Wiskott-Aldrich syndrome protein-interacting protein (WASP-interacting protein).

CSPG3_HUMAN
θ value	0.62314 (rank : 68)	NC score	0.007844 (rank : 279)
Query Neighborhood Hits	197	Target Neighborhood Hits	676	Shared Neighborhood Hits	22
SwissProt Accessions	O14594, Q9UPK6	Gene names	CSPG3, NCAN, NEUR
Domain Architecture
Description	Neurocan core protein precursor (Chondroitin sulfate proteoglycan 3).

HXA3_MOUSE
θ value	0.62314 (rank : 69)	NC score	0.054420 (rank : 177)
Query Neighborhood Hits	197	Target Neighborhood Hits	558	Shared Neighborhood Hits	90
SwissProt Accessions	P02831, Q4V9Z8, Q61197	Gene names	Hoxa3, Hox-1.5, Hoxa-3
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1.5) (MO-10).

MUC2_HUMAN
θ value	0.62314 (rank : 70)	NC score	0.021899 (rank : 235)
Query Neighborhood Hits	197	Target Neighborhood Hits	906	Shared Neighborhood Hits	38
SwissProt Accessions	Q02817, Q14878	Gene names	MUC2, SMUC
Domain Architecture
Description	Mucin-2 precursor (Intestinal mucin-2).

NFIC_MOUSE
θ value	0.62314 (rank : 71)	NC score	0.020712 (rank : 238)
Query Neighborhood Hits	197	Target Neighborhood Hits	66	Shared Neighborhood Hits	8
SwissProt Accessions	P70255, O09072, P70256, Q3U2I9, Q99MA3, Q99MA4, Q99MA5, Q99MA6, Q99MA7, Q99MA8, Q9R1G3	Gene names	Nfic
Domain Architecture
Description	Nuclear factor 1 C-type (Nuclear factor 1/C) (NF1-C) (NFI-C) (NF-I/C) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein).

CBP_HUMAN
θ value	0.813845 (rank : 72)	NC score	0.036441 (rank : 218)
Query Neighborhood Hits	197	Target Neighborhood Hits	941	Shared Neighborhood Hits	63
SwissProt Accessions	Q92793, O00147, Q16376	Gene names	CREBBP, CBP
Domain Architecture
Description	CREB-binding protein (EC 2.3.1.48).

CJ047_HUMAN
θ value	0.813845 (rank : 73)	NC score	0.025494 (rank : 227)
Query Neighborhood Hits	197	Target Neighborhood Hits	164	Shared Neighborhood Hits	6
SwissProt Accessions	Q86WR7, Q5W0J9, Q5W0K0, Q5W0K1, Q5W0K2, Q6PJC8, Q8N317	Gene names	C10orf47
Domain Architecture	No domain graphic available
Description	Protein C10orf47.

PO6F2_MOUSE
θ value	0.813845 (rank : 74)	NC score	0.072972 (rank : 91)
Query Neighborhood Hits	197	Target Neighborhood Hits	639	Shared Neighborhood Hits	90
SwissProt Accessions	Q8BJI4	Gene names	Pou6f2
Domain Architecture	No domain graphic available
Description	POU domain, class 6, transcription factor 2.

CSKI1_MOUSE
θ value	1.06291 (rank : 75)	NC score	0.007633 (rank : 281)
Query Neighborhood Hits	197	Target Neighborhood Hits	1031	Shared Neighborhood Hits	43
SwissProt Accessions	Q6P9K8, Q6ZPU2, Q8BWU2, Q8BX99, Q9CXH0	Gene names	Caskin1, Kiaa1306
Domain Architecture	No domain graphic available
Description	Caskin-1 (CASK-interacting protein 1).

CUTL2_HUMAN
θ value	1.06291 (rank : 76)	NC score	0.124743 (rank : 53)
Query Neighborhood Hits	197	Target Neighborhood Hits	906	Shared Neighborhood Hits	87
SwissProt Accessions	O14529	Gene names	CUTL2, KIAA0293
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

HXA9_HUMAN
θ value	1.06291 (rank : 77)	NC score	0.075239 (rank : 85)
Query Neighborhood Hits	197	Target Neighborhood Hits	332	Shared Neighborhood Hits	82
SwissProt Accessions	P31269, O43369, O43429, Q99820	Gene names	HOXA9, HOX1G
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1G).

HXA9_MOUSE
θ value	1.06291 (rank : 78)	NC score	0.075254 (rank : 84)
Query Neighborhood Hits	197	Target Neighborhood Hits	334	Shared Neighborhood Hits	82
SwissProt Accessions	P09631, O70154, O70155	Gene names	Hoxa9, Hox-1.7, Hoxa-9
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1.7).

SFR14_HUMAN
θ value	1.06291 (rank : 79)	NC score	0.019379 (rank : 247)
Query Neighborhood Hits	197	Target Neighborhood Hits	97	Shared Neighborhood Hits	5
SwissProt Accessions	Q8IX01, O15071, O60369, Q5JPH7, Q8WUF7	Gene names	SFRS14, KIAA0365
Domain Architecture	No domain graphic available
Description	Putative splicing factor, arginine/serine-rich 14 (Arginine/serine- rich-splicing factor 14).

G3PT_MOUSE
θ value	1.38821 (rank : 80)	NC score	0.017472 (rank : 251)
Query Neighborhood Hits	197	Target Neighborhood Hits	78	Shared Neighborhood Hits	7
SwissProt Accessions	Q64467, Q60650	Gene names	Gapdhs, Gapd-s, Gapds
Domain Architecture
Description	Glyceraldehyde-3-phosphate dehydrogenase, testis-specific (EC 1.2.1.12) (Spermatogenic cell-specific glyceraldehyde 3-phosphate dehydrogenase 2) (GAPDH-2).

HXA13_HUMAN
θ value	1.38821 (rank : 81)	NC score	0.079026 (rank : 74)
Query Neighborhood Hits	197	Target Neighborhood Hits	353	Shared Neighborhood Hits	88
SwissProt Accessions	P31271, O43371	Gene names	HOXA13, HOX1J
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1J).

HXA13_MOUSE
θ value	1.38821 (rank : 82)	NC score	0.079442 (rank : 73)
Query Neighborhood Hits	197	Target Neighborhood Hits	351	Shared Neighborhood Hits	88
SwissProt Accessions	Q62424	Gene names	Hoxa13, Hox-1.10
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1.10).

HXD10_HUMAN
θ value	1.38821 (rank : 83)	NC score	0.080803 (rank : 72)
Query Neighborhood Hits	197	Target Neighborhood Hits	392	Shared Neighborhood Hits	86
SwissProt Accessions	P28358	Gene names	HOXD10, HOX4D
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4D) (Hox-4E).

HXD10_MOUSE
θ value	1.38821 (rank : 84)	NC score	0.081231 (rank : 70)
Query Neighborhood Hits	197	Target Neighborhood Hits	392	Shared Neighborhood Hits	86
SwissProt Accessions	P28359, Q91WU9	Gene names	Hoxd10, Hox-4.5, Hoxd-10
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4.5) (Hox-5.3).

LATS1_HUMAN
θ value	1.38821 (rank : 85)	NC score	0.001421 (rank : 295)
Query Neighborhood Hits	197	Target Neighborhood Hits	1057	Shared Neighborhood Hits	26
SwissProt Accessions	O95835, Q6PKD0	Gene names	LATS1, WARTS
Domain Architecture	No domain graphic available
Description	Serine/threonine-protein kinase LATS1 (EC 2.7.11.1) (Large tumor suppressor homolog 1) (WARTS protein kinase) (h-warts).

PRR12_HUMAN
θ value	1.38821 (rank : 86)	NC score	0.025783 (rank : 225)
Query Neighborhood Hits	197	Target Neighborhood Hits	460	Shared Neighborhood Hits	24
SwissProt Accessions	Q9ULL5, Q8N4J6	Gene names	PRR12, KIAA1205
Domain Architecture	No domain graphic available
Description	Proline-rich protein 12.

WNK2_HUMAN
θ value	1.38821 (rank : 87)	NC score	0.004546 (rank : 289)
Query Neighborhood Hits	197	Target Neighborhood Hits	1407	Shared Neighborhood Hits	41
SwissProt Accessions	Q9Y3S1, Q8IY36, Q9C0A3, Q9H3P4	Gene names	WNK2, KIAA1760, PRKWNK2
Domain Architecture
Description	Serine/threonine-protein kinase WNK2 (EC 2.7.11.1) (Protein kinase with no lysine 2) (Protein kinase, lysine-deficient 2).

ZC3H5_MOUSE
θ value	1.38821 (rank : 88)	NC score	0.019426 (rank : 246)
Query Neighborhood Hits	197	Target Neighborhood Hits	136	Shared Neighborhood Hits	4
SwissProt Accessions	Q8BL48, Q8BVI6, Q99JZ8, Q99LL9	Gene names	Zc3h5, Kiaa1753, Zc3hdc5
Domain Architecture	No domain graphic available
Description	Zinc finger CCCH domain-containing protein 5.

CLOCK_MOUSE
θ value	1.81305 (rank : 89)	NC score	0.012678 (rank : 266)
Query Neighborhood Hits	197	Target Neighborhood Hits	148	Shared Neighborhood Hits	8
SwissProt Accessions	O08785	Gene names	Clock
Domain Architecture
Description	Circadian locomoter output cycles protein kaput (mCLOCK).

CUTL1_MOUSE
θ value	1.81305 (rank : 90)	NC score	0.069095 (rank : 108)
Query Neighborhood Hits	197	Target Neighborhood Hits	1620	Shared Neighborhood Hits	92
SwissProt Accessions	P53564, O08994, P70301, Q571L6, Q91ZD2	Gene names	Cutl1, Cux, Cux1, Kiaa4047
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP) (Homeobox protein Cux).

IF35_MOUSE
θ value	1.81305 (rank : 91)	NC score	0.020449 (rank : 240)
Query Neighborhood Hits	197	Target Neighborhood Hits	210	Shared Neighborhood Hits	20
SwissProt Accessions	Q9DCH4	Gene names	Eif3s5
Domain Architecture
Description	Eukaryotic translation initiation factor 3 subunit 5 (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f).

LDB3_HUMAN
θ value	1.81305 (rank : 92)	NC score	0.011260 (rank : 270)
Query Neighborhood Hits	197	Target Neighborhood Hits	497	Shared Neighborhood Hits	23
SwissProt Accessions	O75112, Q5K6N9, Q5K6P0, Q5K6P1, Q96FH2, Q9Y4Z3, Q9Y4Z4, Q9Y4Z5	Gene names	LDB3, KIAA0613, ZASP
Domain Architecture	No domain graphic available
Description	LIM domain-binding protein 3 (Z-band alternatively spliced PDZ-motif protein) (Protein cypher).

SFPQ_HUMAN
θ value	1.81305 (rank : 93)	NC score	0.012208 (rank : 268)
Query Neighborhood Hits	197	Target Neighborhood Hits	986	Shared Neighborhood Hits	29
SwissProt Accessions	P23246, P30808	Gene names	SFPQ, PSF
Domain Architecture
Description	Splicing factor, proline- and glutamine-rich (Polypyrimidine tract- binding protein-associated-splicing factor) (PTB-associated-splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100 kDa DNA-pairing protein) (hPOMp100).

SRF_HUMAN
θ value	1.81305 (rank : 94)	NC score	0.029028 (rank : 224)
Query Neighborhood Hits	197	Target Neighborhood Hits	43	Shared Neighborhood Hits	6
SwissProt Accessions	P11831	Gene names	SRF
Domain Architecture
Description	Serum response factor (SRF).

ZBT38_HUMAN
θ value	1.81305 (rank : 95)	NC score	-0.001741 (rank : 299)
Query Neighborhood Hits	197	Target Neighborhood Hits	885	Shared Neighborhood Hits	11
SwissProt Accessions	Q8NAP3	Gene names	ZBTB38
Domain Architecture	No domain graphic available
Description	Zinc finger and BTB domain-containing protein 38.

ARI1A_HUMAN
θ value	2.36792 (rank : 96)	NC score	0.022573 (rank : 233)
Query Neighborhood Hits	197	Target Neighborhood Hits	787	Shared Neighborhood Hits	44
SwissProt Accessions	O14497, Q53FK9, Q5T0W1, Q5T0W2, Q5T0W3, Q8NFD6, Q96T89, Q9BY33, Q9HBJ5, Q9UPZ1	Gene names	ARID1A, C1orf4, OSA1, SMARCF1
Domain Architecture
Description	AT-rich interactive domain-containing protein 1A (ARID domain- containing protein 1A) (SWI/SNF-related, matrix-associated, actin- dependent regulator of chromatin subfamily F member 1) (SWI-SNF complex protein p270) (B120) (SWI-like protein) (Osa homolog 1) (hOSA1) (hELD) (BRG1-associated factor 250) (BAF250) (BRG1-associated factor 250a) (BAF250A).

DLX4_MOUSE
θ value	2.36792 (rank : 97)	NC score	0.075183 (rank : 87)
Query Neighborhood Hits	197	Target Neighborhood Hits	352	Shared Neighborhood Hits	85
SwissProt Accessions	P70436, Q3UM51, Q8R4I3	Gene names	Dlx4, Dlx7
Domain Architecture
Description	Homeobox protein DLX-4 (DLX-7).

DNMBP_MOUSE
θ value	2.36792 (rank : 98)	NC score	0.006373 (rank : 283)
Query Neighborhood Hits	197	Target Neighborhood Hits	435	Shared Neighborhood Hits	7
SwissProt Accessions	Q6TXD4, Q6ZQ05, Q8CEW8, Q8R0Y2	Gene names	Dnmbp, Kiaa1010
Domain Architecture	No domain graphic available
Description	Dynamin-binding protein (Scaffold protein Tuba).

HLX1_HUMAN
θ value	2.36792 (rank : 99)	NC score	0.086049 (rank : 63)
Query Neighborhood Hits	197	Target Neighborhood Hits	370	Shared Neighborhood Hits	82
SwissProt Accessions	Q14774, Q15988	Gene names	HLX1
Domain Architecture
Description	Homeobox protein HLX1 (Homeobox protein HB24).

HLX1_MOUSE
θ value	2.36792 (rank : 100)	NC score	0.081116 (rank : 71)
Query Neighborhood Hits	197	Target Neighborhood Hits	362	Shared Neighborhood Hits	81
SwissProt Accessions	Q61670	Gene names	Hlx1, Hlx
Domain Architecture
Description	Homeobox protein HLX1.

HXB13_HUMAN
θ value	2.36792 (rank : 101)	NC score	0.083852 (rank : 66)
Query Neighborhood Hits	197	Target Neighborhood Hits	377	Shared Neighborhood Hits	89
SwissProt Accessions	Q92826, Q96QM4, Q99810	Gene names	HOXB13
Domain Architecture
Description	Homeobox protein Hox-B13.

HXC10_HUMAN
θ value	2.36792 (rank : 102)	NC score	0.076739 (rank : 79)
Query Neighborhood Hits	197	Target Neighborhood Hits	417	Shared Neighborhood Hits	86
SwissProt Accessions	Q9NYD6, O15219, O15220, Q9BVD5	Gene names	HOXC10
Domain Architecture
Description	Homeobox protein Hox-C10.

HXC10_MOUSE
θ value	2.36792 (rank : 103)	NC score	0.077723 (rank : 77)
Query Neighborhood Hits	197	Target Neighborhood Hits	417	Shared Neighborhood Hits	85
SwissProt Accessions	P31257, P31312, Q7TMT7	Gene names	Hoxc10, Hox-3.6, Hoxc-10
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C10 (Hox-3.6).

LBX1_HUMAN
θ value	2.36792 (rank : 104)	NC score	0.098095 (rank : 57)
Query Neighborhood Hits	197	Target Neighborhood Hits	357	Shared Neighborhood Hits	90
SwissProt Accessions	P52954	Gene names	LBX1
Domain Architecture
Description	Transcription factor LBX1.

LHX2_HUMAN
θ value	2.36792 (rank : 105)	NC score	0.083854 (rank : 65)
Query Neighborhood Hits	197	Target Neighborhood Hits	432	Shared Neighborhood Hits	86
SwissProt Accessions	P50458, O95860, Q8N1Z3	Gene names	LHX2, LH2
Domain Architecture
Description	LIM/homeobox protein Lhx2 (Homeobox protein LH-2).

LHX2_MOUSE
θ value	2.36792 (rank : 106)	NC score	0.086002 (rank : 64)
Query Neighborhood Hits	197	Target Neighborhood Hits	431	Shared Neighborhood Hits	85
SwissProt Accessions	Q9Z0S2	Gene names	Lhx2
Domain Architecture
Description	LIM/homeobox protein Lhx2.

LHX9_HUMAN
θ value	2.36792 (rank : 107)	NC score	0.089437 (rank : 60)
Query Neighborhood Hits	197	Target Neighborhood Hits	444	Shared Neighborhood Hits	84
SwissProt Accessions	Q9NQ69, Q5VUE3, Q9BYU6, Q9NQ70	Gene names	LHX9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

LHX9_MOUSE
θ value	2.36792 (rank : 108)	NC score	0.086109 (rank : 62)
Query Neighborhood Hits	197	Target Neighborhood Hits	445	Shared Neighborhood Hits	84
SwissProt Accessions	Q9WUH2, Q9QYQ5, Q9QYQ6, Q9QZ00, Q9WU44	Gene names	Lhx9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

MAML2_HUMAN
θ value	2.36792 (rank : 109)	NC score	0.029045 (rank : 223)
Query Neighborhood Hits	197	Target Neighborhood Hits	360	Shared Neighborhood Hits	22
SwissProt Accessions	Q8IZL2, Q6AI23, Q6Y3A3, Q8IUL3, Q96JK6	Gene names	MAML2, KIAA1819
Domain Architecture	No domain graphic available
Description	Mastermind-like protein 2 (Mam-2).

NKX32_HUMAN
θ value	2.36792 (rank : 110)	NC score	0.049612 (rank : 209)
Query Neighborhood Hits	197	Target Neighborhood Hits	323	Shared Neighborhood Hits	74
SwissProt Accessions	P78367	Gene names	BAPX1, NKX3B
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

NKX32_MOUSE
θ value	2.36792 (rank : 111)	NC score	0.049918 (rank : 208)
Query Neighborhood Hits	197	Target Neighborhood Hits	326	Shared Neighborhood Hits	74
SwissProt Accessions	P97503	Gene names	Bapx1, Nkx-3.2, Nkx3-2, Nkx3b
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

PCLO_MOUSE
θ value	2.36792 (rank : 112)	NC score	0.023096 (rank : 229)
Query Neighborhood Hits	197	Target Neighborhood Hits	2275	Shared Neighborhood Hits	87
SwissProt Accessions	Q9QYX7, Q8CF91, Q8CF92, Q9QYX6, Q9QZJ0	Gene names	Pclo, Acz
Domain Architecture
Description	Protein piccolo (Aczonin) (Multidomain presynaptic cytomatrix protein) (Brain-derived HLMN protein).

SIN3A_MOUSE
θ value	2.36792 (rank : 113)	NC score	0.012841 (rank : 264)
Query Neighborhood Hits	197	Target Neighborhood Hits	169	Shared Neighborhood Hits	11
SwissProt Accessions	Q60520, Q60820, Q62139, Q62140, Q7TPU8, Q7TSZ2	Gene names	Sin3a
Domain Architecture
Description	Paired amphipathic helix protein Sin3a (Transcriptional corepressor Sin3a) (Histone deacetylase complex subunit Sin3a).

WNK1_HUMAN
θ value	2.36792 (rank : 114)	NC score	0.002068 (rank : 294)
Query Neighborhood Hits	197	Target Neighborhood Hits	1158	Shared Neighborhood Hits	31
SwissProt Accessions	Q9H4A3, O15052, Q86WL5, Q8N673, Q9P1S9	Gene names	WNK1, KDP, KIAA0344, PRKWNK1
Domain Architecture
Description	Serine/threonine-protein kinase WNK1 (EC 2.7.11.1) (Protein kinase with no lysine 1) (Protein kinase, lysine-deficient 1) (Kinase deficient protein).

CAC1G_HUMAN
θ value	3.0926 (rank : 115)	NC score	0.014541 (rank : 258)
Query Neighborhood Hits	197	Target Neighborhood Hits	587	Shared Neighborhood Hits	42
SwissProt Accessions	O43497, O43498, O94770, Q9NYU4, Q9NYU5, Q9NYU6, Q9NYU7, Q9NYU8, Q9NYU9, Q9NYV0, Q9NYV1, Q9UHN9, Q9UHP0, Q9ULU6, Q9UNG7, Q9Y5T2, Q9Y5T3	Gene names	CACNA1G, KIAA1123
Domain Architecture
Description	Voltage-dependent T-type calcium channel subunit alpha-1G (Voltage- gated calcium channel subunit alpha Cav3.1) (Cav3.1c) (NBR13).

CBP_MOUSE
θ value	3.0926 (rank : 116)	NC score	0.032818 (rank : 222)
Query Neighborhood Hits	197	Target Neighborhood Hits	1051	Shared Neighborhood Hits	72
SwissProt Accessions	P45481	Gene names	Crebbp, Cbp
Domain Architecture
Description	CREB-binding protein (EC 2.3.1.48).

CUTL1_HUMAN
θ value	3.0926 (rank : 117)	NC score	0.062478 (rank : 145)
Query Neighborhood Hits	197	Target Neighborhood Hits	1574	Shared Neighborhood Hits	87
SwissProt Accessions	P39880, Q6NYH4, Q9UEV5	Gene names	CUTL1
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP).

EMX1_HUMAN
θ value	3.0926 (rank : 118)	NC score	0.063157 (rank : 139)
Query Neighborhood Hits	197	Target Neighborhood Hits	336	Shared Neighborhood Hits	85
SwissProt Accessions	Q04741, Q86XB0	Gene names	EMX1
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty spiracles- like protein 1).

FA61A_MOUSE
θ value	3.0926 (rank : 119)	NC score	0.022789 (rank : 230)
Query Neighborhood Hits	197	Target Neighborhood Hits	81	Shared Neighborhood Hits	11
SwissProt Accessions	Q8K2F8, Q9CTG8	Gene names	Fam61a
Domain Architecture	No domain graphic available
Description	Protein FAM61A.

HXD13_HUMAN
θ value	3.0926 (rank : 120)	NC score	0.074403 (rank : 90)
Query Neighborhood Hits	197	Target Neighborhood Hits	332	Shared Neighborhood Hits	80
SwissProt Accessions	P35453	Gene names	HOXD13, HOX4I
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4I).

HXD13_MOUSE
θ value	3.0926 (rank : 121)	NC score	0.074499 (rank : 89)
Query Neighborhood Hits	197	Target Neighborhood Hits	324	Shared Neighborhood Hits	80
SwissProt Accessions	P70217, Q2VPB0, Q2VPB1, Q64177	Gene names	Hoxd13, Hox-4.8
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4.8).

MLL3_HUMAN
θ value	3.0926 (rank : 122)	NC score	0.025606 (rank : 226)
Query Neighborhood Hits	197	Target Neighborhood Hits	1644	Shared Neighborhood Hits	74
SwissProt Accessions	Q8NEZ4, Q8NC02, Q8NDF6, Q9H9P4, Q9NR13, Q9P222, Q9UDR7	Gene names	MLL3, HALR, KIAA1506
Domain Architecture
Description	Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog (EC 2.1.1.43) (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (Homologous to ALR protein).

MUC7_HUMAN
θ value	3.0926 (rank : 123)	NC score	0.020058 (rank : 243)
Query Neighborhood Hits	197	Target Neighborhood Hits	538	Shared Neighborhood Hits	28
SwissProt Accessions	Q8TAX7	Gene names	MUC7, MG2
Domain Architecture	No domain graphic available
Description	Mucin-7 precursor (MUC-7) (Salivary mucin-7) (Apo-MG2).

SOX9_MOUSE
θ value	3.0926 (rank : 124)	NC score	0.016340 (rank : 254)
Query Neighborhood Hits	197	Target Neighborhood Hits	188	Shared Neighborhood Hits	12
SwissProt Accessions	Q04887, Q8C7L2, Q91ZK2, Q99KQ0	Gene names	Sox9, Sox-9
Domain Architecture
Description	Transcription factor SOX-9.

WNK1_MOUSE
θ value	3.0926 (rank : 125)	NC score	0.003722 (rank : 290)
Query Neighborhood Hits	197	Target Neighborhood Hits	1179	Shared Neighborhood Hits	40
SwissProt Accessions	P83741	Gene names	Wnk1, Prkwnk1
Domain Architecture
Description	Serine/threonine-protein kinase WNK1 (EC 2.7.11.1) (Protein kinase with no lysine 1) (Protein kinase, lysine-deficient 1).

AMELY_HUMAN
θ value	4.03905 (rank : 126)	NC score	0.016272 (rank : 255)
Query Neighborhood Hits	197	Target Neighborhood Hits	57	Shared Neighborhood Hits	6
SwissProt Accessions	Q99218, Q6RWT1	Gene names	AMELY, AMGL, AMGY
Domain Architecture
Description	Amelogenin, Y isoform precursor.

BAG3_MOUSE
θ value	4.03905 (rank : 127)	NC score	0.020213 (rank : 241)
Query Neighborhood Hits	197	Target Neighborhood Hits	513	Shared Neighborhood Hits	41
SwissProt Accessions	Q9JLV1, Q9JJC7	Gene names	Bag3, Bis
Domain Architecture
Description	BAG family molecular chaperone regulator 3 (BCL-2-binding athanogene- 3) (BAG-3) (Bcl-2-binding protein Bis).

EMX2_HUMAN
θ value	4.03905 (rank : 128)	NC score	0.076390 (rank : 81)
Query Neighborhood Hits	197	Target Neighborhood Hits	341	Shared Neighborhood Hits	85
SwissProt Accessions	Q04743, Q96NN8, Q9BQF4	Gene names	EMX2
Domain Architecture
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

EMX2_MOUSE
θ value	4.03905 (rank : 129)	NC score	0.076738 (rank : 80)
Query Neighborhood Hits	197	Target Neighborhood Hits	340	Shared Neighborhood Hits	86
SwissProt Accessions	Q04744, Q80UE7	Gene names	Emx2, Emx-2
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

FUT7_MOUSE
θ value	4.03905 (rank : 130)	NC score	0.008493 (rank : 277)
Query Neighborhood Hits	197	Target Neighborhood Hits	12	Shared Neighborhood Hits	2
SwissProt Accessions	Q11131	Gene names	Fut7
Domain Architecture
Description	Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside 3-L- fucosyltransferase) (Fucosyltransferase 7) (FUCT-VII).

HNF1A_MOUSE
θ value	4.03905 (rank : 131)	NC score	0.025202 (rank : 228)
Query Neighborhood Hits	197	Target Neighborhood Hits	212	Shared Neighborhood Hits	25
SwissProt Accessions	P22361	Gene names	Tcf1, Hnf-1, Hnf-1a, Hnf1a
Domain Architecture
Description	Hepatocyte nuclear factor 1-alpha (HNF-1A) (Liver-specific transcription factor LF-B1) (LFB1).

HXB13_MOUSE
θ value	4.03905 (rank : 132)	NC score	0.078547 (rank : 75)
Query Neighborhood Hits	197	Target Neighborhood Hits	384	Shared Neighborhood Hits	86
SwissProt Accessions	P70321, Q80Y12	Gene names	Hoxb13
Domain Architecture
Description	Homeobox protein Hox-B13.

HXB9_HUMAN
θ value	4.03905 (rank : 133)	NC score	0.063383 (rank : 137)
Query Neighborhood Hits	197	Target Neighborhood Hits	344	Shared Neighborhood Hits	76
SwissProt Accessions	P17482, Q9H1I1	Gene names	HOXB9, HOX2E
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5).

HXB9_MOUSE
θ value	4.03905 (rank : 134)	NC score	0.064430 (rank : 134)
Query Neighborhood Hits	197	Target Neighborhood Hits	344	Shared Neighborhood Hits	78
SwissProt Accessions	P20615	Gene names	Hoxb9, Hox-2.5, Hoxb-9
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2.5).

OSBL5_HUMAN
θ value	4.03905 (rank : 135)	NC score	0.015165 (rank : 257)
Query Neighborhood Hits	197	Target Neighborhood Hits	117	Shared Neighborhood Hits	5
SwissProt Accessions	Q9H0X9, Q9BZB0, Q9P1Z4	Gene names	OSBPL5, KIAA1534, ORP5
Domain Architecture
Description	Oxysterol-binding protein-related protein 5 (OSBP-related protein 5) (ORP-5).

PARD3_HUMAN
θ value	4.03905 (rank : 136)	NC score	0.005252 (rank : 287)
Query Neighborhood Hits	197	Target Neighborhood Hits	312	Shared Neighborhood Hits	6
SwissProt Accessions	Q8TEW0, Q8TEW1, Q8TEW2, Q8TEW3, Q96K28, Q96RM6, Q96RM7, Q9BY57, Q9BY58, Q9HC48, Q9NWL4, Q9NYE6	Gene names	PARD3, PAR3, PAR3A
Domain Architecture
Description	Partitioning-defective 3 homolog (PARD-3) (PAR-3) (Atypical PKC isotype-specific-interacting protein) (ASIP) (CTCL tumor antigen se2- 5) (PAR3-alpha).

PO6F1_HUMAN
θ value	4.03905 (rank : 137)	NC score	0.065348 (rank : 125)
Query Neighborhood Hits	197	Target Neighborhood Hits	370	Shared Neighborhood Hits	74
SwissProt Accessions	Q14863	Gene names	POU6F1, BRN5, MPOU, TCFB1
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (mPOU homeobox protein) (Brain-specific homeobox/POU domain protein 5) (Brain-5) (Brn-5 protein).

PO6F1_MOUSE
θ value	4.03905 (rank : 138)	NC score	0.069880 (rank : 102)
Query Neighborhood Hits	197	Target Neighborhood Hits	581	Shared Neighborhood Hits	102
SwissProt Accessions	Q07916, Q91XK3	Gene names	Pou6f1, Emb
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (Octamer-binding transcription factor EMB) (Transcription regulatory protein MCP-1).

SETD2_HUMAN
θ value	4.03905 (rank : 139)	NC score	0.012140 (rank : 269)
Query Neighborhood Hits	197	Target Neighborhood Hits	412	Shared Neighborhood Hits	16
SwissProt Accessions	Q9BYW2, O75397, O75405, Q17RW8, Q5BKS9, Q5QGN2, Q69YI5, Q6IN64, Q6ZN53, Q6ZS25, Q8N3R0, Q8TCN0, Q9C0D1, Q9H696, Q9NZW9	Gene names	SETD2, HIF1, HYPB, KIAA1732, SET2
Domain Architecture	No domain graphic available
Description	Histone-lysine N-methyltransferase, H3 lysine-36-specific (EC 2.1.1.43) (SET domain-containing protein 2) (hSET2) (Huntingtin- interacting protein HYPB) (Huntingtin-interacting protein 1) (HIF-1) (p231HBP).

ACINU_MOUSE
θ value	5.27518 (rank : 140)	NC score	0.015611 (rank : 256)
Query Neighborhood Hits	197	Target Neighborhood Hits	712	Shared Neighborhood Hits	21
SwissProt Accessions	Q9JIX8, Q9CSN7, Q9CSR9, Q9CSX7, Q9R046, Q9R047	Gene names	Acin1, Acinus
Domain Architecture
Description	Apoptotic chromatin condensation inducer in the nucleus (Acinus).

BRD4_HUMAN
θ value	5.27518 (rank : 141)	NC score	0.016511 (rank : 253)
Query Neighborhood Hits	197	Target Neighborhood Hits	851	Shared Neighborhood Hits	34
SwissProt Accessions	O60885, O60433, Q96PD3	Gene names	BRD4, HUNK1
Domain Architecture
Description	Bromodomain-containing protein 4 (HUNK1 protein).

CEND1_HUMAN
θ value	5.27518 (rank : 142)	NC score	0.005748 (rank : 286)
Query Neighborhood Hits	197	Target Neighborhood Hits	284	Shared Neighborhood Hits	5
SwissProt Accessions	Q8WZ64, Q4W5D2, Q7Z2L5, Q96L70, Q96P49, Q9Y4E4	Gene names	CENTD1, ARAP2, KIAA0580
Domain Architecture	No domain graphic available
Description	Centaurin-delta 1 (Cnt-d1) (Arf-GAP, Rho-GAP, ankyrin repeat and pleckstrin homology domain-containing protein 2) (PARX protein).

DLX4_HUMAN
θ value	5.27518 (rank : 143)	NC score	0.069674 (rank : 104)
Query Neighborhood Hits	197	Target Neighborhood Hits	350	Shared Neighborhood Hits	85
SwissProt Accessions	Q92988, O60480, Q13265, Q6PJK0, Q9HBE0	Gene names	DLX4, BP1, DLX7, DLX8
Domain Architecture	No domain graphic available
Description	Homeobox protein DLX-4 (DLX-7) (DLX-8) (Beta protein 1).

FHOD1_MOUSE
θ value	5.27518 (rank : 144)	NC score	0.010472 (rank : 273)
Query Neighborhood Hits	197	Target Neighborhood Hits	217	Shared Neighborhood Hits	16
SwissProt Accessions	Q6P9Q4, Q8BMK2	Gene names	Fhod1, Fhos1
Domain Architecture	No domain graphic available
Description	FH1/FH2 domain-containing protein (Formin homolog overexpressed in spleen) (FHOS) (Formin homology 2 domain-containing protein 1).

FOXJ2_HUMAN
θ value	5.27518 (rank : 145)	NC score	0.002849 (rank : 291)
Query Neighborhood Hits	197	Target Neighborhood Hits	239	Shared Neighborhood Hits	8
SwissProt Accessions	Q9P0K8, Q96PS9, Q9NSN5	Gene names	FOXJ2, FHX
Domain Architecture
Description	Forkhead box protein J2 (Fork head homologous X).

HXC9_HUMAN
θ value	5.27518 (rank : 146)	NC score	0.069623 (rank : 105)
Query Neighborhood Hits	197	Target Neighborhood Hits	339	Shared Neighborhood Hits	79
SwissProt Accessions	P31274, Q9H1I0	Gene names	HOXC9, HOX3B
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3B).

HXC9_MOUSE
θ value	5.27518 (rank : 147)	NC score	0.069604 (rank : 106)
Query Neighborhood Hits	197	Target Neighborhood Hits	338	Shared Neighborhood Hits	79
SwissProt Accessions	P09633	Gene names	Hoxc9, Hox-3.2, Hoxc-9
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3.2).

LDB3_MOUSE
θ value	5.27518 (rank : 148)	NC score	0.010371 (rank : 274)
Query Neighborhood Hits	197	Target Neighborhood Hits	510	Shared Neighborhood Hits	25
SwissProt Accessions	Q9JKS4, Q6A038, Q811P2, Q811P3, Q811P4, Q811P5, Q9D130, Q9JKS3, Q9R0Z1, Q9WVH1, Q9WVH2	Gene names	Ldb3, Kiaa0613
Domain Architecture	No domain graphic available
Description	LIM domain-binding protein 3 (Z-band alternatively spliced PDZ-motif protein) (Protein cypher) (Protein oracle).

MDN1_HUMAN
θ value	5.27518 (rank : 149)	NC score	0.010493 (rank : 272)
Query Neighborhood Hits	197	Target Neighborhood Hits	662	Shared Neighborhood Hits	13
SwissProt Accessions	Q9NU22, O15019	Gene names	MDN1, KIAA0301
Domain Architecture
Description	Midasin (MIDAS-containing protein).

MUC5B_HUMAN
θ value	5.27518 (rank : 150)	NC score	0.013177 (rank : 262)
Query Neighborhood Hits	197	Target Neighborhood Hits	1020	Shared Neighborhood Hits	36
SwissProt Accessions	Q9HC84, O00447, O00573, O14985, O15494, O95291, O95451, Q14881, Q99552, Q9UE28	Gene names	MUC5B, MUC5
Domain Architecture
Description	Mucin-5B precursor (Mucin-5 subtype B, tracheobronchial) (High molecular weight salivary mucin MG1) (Sublingual gland mucin).

NKX28_HUMAN
θ value	5.27518 (rank : 151)	NC score	0.075217 (rank : 86)
Query Neighborhood Hits	197	Target Neighborhood Hits	352	Shared Neighborhood Hits	90
SwissProt Accessions	O15522	Gene names	NKX2-8, NKX-2.8, NKX2G, NKX2H
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H).

NUMBL_HUMAN
θ value	5.27518 (rank : 152)	NC score	0.020474 (rank : 239)
Query Neighborhood Hits	197	Target Neighborhood Hits	394	Shared Neighborhood Hits	45
SwissProt Accessions	Q9Y6R0, Q7Z4J9	Gene names	NUMBL
Domain Architecture
Description	Numb-like protein (Numb-R).

PCLO_HUMAN
θ value	5.27518 (rank : 153)	NC score	0.020067 (rank : 242)
Query Neighborhood Hits	197	Target Neighborhood Hits	2046	Shared Neighborhood Hits	82
SwissProt Accessions	Q9Y6V0, O43373, O60305, Q9BVC8, Q9UIV2, Q9Y6U9	Gene names	PCLO, ACZ, KIAA0559
Domain Architecture
Description	Protein piccolo (Aczonin).

SALL3_HUMAN
θ value	5.27518 (rank : 154)	NC score	-0.000999 (rank : 297)
Query Neighborhood Hits	197	Target Neighborhood Hits	1066	Shared Neighborhood Hits	25
SwissProt Accessions	Q9BXA9, Q9UGH1	Gene names	SALL3
Domain Architecture	No domain graphic available
Description	Sal-like protein 3 (Zinc finger protein SALL3) (hSALL3).

SDC3_MOUSE
θ value	5.27518 (rank : 155)	NC score	0.013293 (rank : 261)
Query Neighborhood Hits	197	Target Neighborhood Hits	107	Shared Neighborhood Hits	10
SwissProt Accessions	Q64519, Q3UDD9, Q6ZQA4, Q7TQD4	Gene names	Sdc3, Kiaa0468
Domain Architecture
Description	Syndecan-3 precursor (SYND3).

BRD4_MOUSE
θ value	6.88961 (rank : 156)	NC score	0.017197 (rank : 252)
Query Neighborhood Hits	197	Target Neighborhood Hits	845	Shared Neighborhood Hits	28
SwissProt Accessions	Q9ESU6, Q8VHF7, Q8VHF8	Gene names	Brd4, Mcap
Domain Architecture	No domain graphic available
Description	Bromodomain-containing protein 4 (Mitotic chromosome-associated protein) (MCAP).

CTND2_MOUSE
θ value	6.88961 (rank : 157)	NC score	0.006025 (rank : 285)
Query Neighborhood Hits	197	Target Neighborhood Hits	227	Shared Neighborhood Hits	18
SwissProt Accessions	O35927	Gene names	Ctnnd2, Catnd2, Nprap
Domain Architecture
Description	Catenin delta-2 (Neural plakophilin-related ARM-repeat protein) (NPRAP) (Neurojungin).

DYR1B_HUMAN
θ value	6.88961 (rank : 158)	NC score	-0.002061 (rank : 301)
Query Neighborhood Hits	197	Target Neighborhood Hits	831	Shared Neighborhood Hits	16
SwissProt Accessions	Q9Y463, O75258, O75788, O75789	Gene names	DYRK1B, MIRK
Domain Architecture
Description	Dual specificity tyrosine-phosphorylation-regulated kinase 1B (EC 2.7.12.1) (Mirk protein kinase) (Minibrain-related kinase).

HNF1A_HUMAN
θ value	6.88961 (rank : 159)	NC score	0.018906 (rank : 248)
Query Neighborhood Hits	197	Target Neighborhood Hits	193	Shared Neighborhood Hits	19
SwissProt Accessions	P20823, Q99861	Gene names	TCF1, HNF1A
Domain Architecture
Description	Hepatocyte nuclear factor 1-alpha (HNF-1A) (Liver-specific transcription factor LF-B1) (LFB1) (Transcription factor 1) (TCF-1).

HXC13_HUMAN
θ value	6.88961 (rank : 160)	NC score	0.064933 (rank : 130)
Query Neighborhood Hits	197	Target Neighborhood Hits	336	Shared Neighborhood Hits	81
SwissProt Accessions	P31276, Q96J32, Q9NR24, Q9NYD5	Gene names	HOXC13, HOX3G
Domain Architecture
Description	Homeobox protein Hox-C13 (Hox-3G).

HXC13_MOUSE
θ value	6.88961 (rank : 161)	NC score	0.064938 (rank : 129)
Query Neighborhood Hits	197	Target Neighborhood Hits	337	Shared Neighborhood Hits	81
SwissProt Accessions	P50207, Q53Z78, Q920I7	Gene names	Hoxc13, Hoxc-13
Domain Architecture
Description	Homeobox protein Hox-C13.

HXD9_HUMAN
θ value	6.88961 (rank : 162)	NC score	0.064933 (rank : 131)
Query Neighborhood Hits	197	Target Neighborhood Hits	352	Shared Neighborhood Hits	80
SwissProt Accessions	P28356	Gene names	HOXD9, HOX4C
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2).

HXD9_MOUSE
θ value	6.88961 (rank : 163)	NC score	0.064819 (rank : 132)
Query Neighborhood Hits	197	Target Neighborhood Hits	359	Shared Neighborhood Hits	79
SwissProt Accessions	P28357, Q3UYS2	Gene names	Hoxd9, Hox-4.4, Hoxd-9
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4.4) (Hox-5.2).

K0174_HUMAN
θ value	6.88961 (rank : 164)	NC score	0.010849 (rank : 271)
Query Neighborhood Hits	197	Target Neighborhood Hits	37	Shared Neighborhood Hits	4
SwissProt Accessions	P53990, Q9BQ81, Q9BWN2	Gene names	KIAA0174
Domain Architecture
Description	Protein KIAA0174 (Putative MAPK-activating protein PM28).

LBX1_MOUSE
θ value	6.88961 (rank : 165)	NC score	0.095638 (rank : 58)
Query Neighborhood Hits	197	Target Neighborhood Hits	349	Shared Neighborhood Hits	88
SwissProt Accessions	P52955	Gene names	Lbx1, Lbx1h
Domain Architecture
Description	Transcription factor LBX1.

M3K14_MOUSE
θ value	6.88961 (rank : 166)	NC score	-0.002465 (rank : 302)
Query Neighborhood Hits	197	Target Neighborhood Hits	889	Shared Neighborhood Hits	13
SwissProt Accessions	Q9WUL6	Gene names	Map3k14, Nik
Domain Architecture
Description	Mitogen-activated protein kinase kinase kinase 14 (EC 2.7.11.25) (NF- kappa beta-inducing kinase) (Serine/threonine-protein kinase NIK).

MN1_HUMAN
θ value	6.88961 (rank : 167)	NC score	0.018279 (rank : 250)
Query Neighborhood Hits	197	Target Neighborhood Hits	196	Shared Neighborhood Hits	12
SwissProt Accessions	Q10571	Gene names	MN1
Domain Architecture	No domain graphic available
Description	Probable tumor suppressor protein MN1.

PO6F2_HUMAN
θ value	6.88961 (rank : 168)	NC score	0.069911 (rank : 101)
Query Neighborhood Hits	197	Target Neighborhood Hits	618	Shared Neighborhood Hits	88
SwissProt Accessions	P78424, P78425, Q75ME8, Q86UM6, Q9UDS7	Gene names	POU6F2, RPF1
Domain Architecture
Description	POU domain, class 6, transcription factor 2 (Retina-derived POU-domain factor 1) (RPF-1).

RANB9_MOUSE
θ value	6.88961 (rank : 169)	NC score	0.008213 (rank : 278)
Query Neighborhood Hits	197	Target Neighborhood Hits	58	Shared Neighborhood Hits	2
SwissProt Accessions	P69566	Gene names	Ranbp9, Ranbpm
Domain Architecture	No domain graphic available
Description	Ran-binding protein 9 (RanBP9) (Ran-binding protein M) (RanBPM) (B cell antigen receptor Ig beta-associated protein 1) (IBAP-1).

RERE_MOUSE
θ value	6.88961 (rank : 170)	NC score	0.014209 (rank : 259)
Query Neighborhood Hits	197	Target Neighborhood Hits	785	Shared Neighborhood Hits	41
SwissProt Accessions	Q80TZ9	Gene names	Rere, Atr2, Kiaa0458
Domain Architecture	No domain graphic available
Description	Arginine-glutamic acid dipeptide repeats protein (Atrophin-2).

SC24C_HUMAN
θ value	6.88961 (rank : 171)	NC score	0.021899 (rank : 234)
Query Neighborhood Hits	197	Target Neighborhood Hits	662	Shared Neighborhood Hits	59
SwissProt Accessions	P53992, Q8WV25	Gene names	SEC24C, KIAA0079
Domain Architecture
Description	Protein transport protein Sec24C (SEC24-related protein C).

SMCA2_HUMAN
θ value	6.88961 (rank : 172)	NC score	0.006678 (rank : 282)
Query Neighborhood Hits	197	Target Neighborhood Hits	503	Shared Neighborhood Hits	20
SwissProt Accessions	P51531	Gene names	SMARCA2, BRM, SNF2A, SNF2L2
Domain Architecture
Description	Probable global transcription activator SNF2L2 (EC 3.6.1.-) (ATP- dependent helicase SMARCA2) (SNF2-alpha) (SWI/SNF-related matrix- associated actin-dependent regulator of chromatin subfamily A member 2) (hBRM).

TFG_HUMAN
θ value	6.88961 (rank : 173)	NC score	0.018364 (rank : 249)
Query Neighborhood Hits	197	Target Neighborhood Hits	122	Shared Neighborhood Hits	10
SwissProt Accessions	Q92734, Q15656	Gene names	TFG
Domain Architecture
Description	Protein TFG (TRK-fused gene protein).

TRI47_HUMAN
θ value	6.88961 (rank : 174)	NC score	0.002368 (rank : 293)
Query Neighborhood Hits	197	Target Neighborhood Hits	286	Shared Neighborhood Hits	2
SwissProt Accessions	Q96LD4, Q96GU5, Q9BRN7	Gene names	TRIM47, GOA, RNF100
Domain Architecture	No domain graphic available
Description	Tripartite motif-containing protein 47 (Gene overexpressed in astrocytoma protein) (RING finger protein 100).

WASF3_MOUSE
θ value	6.88961 (rank : 175)	NC score	0.022628 (rank : 232)
Query Neighborhood Hits	197	Target Neighborhood Hits	188	Shared Neighborhood Hits	15
SwissProt Accessions	Q8VHI6	Gene names	Wasf3, Wave3
Domain Architecture	No domain graphic available
Description	Wiskott-Aldrich syndrome protein family member 3 (WASP-family protein member 3) (Protein WAVE-3).

WASL_MOUSE
θ value	6.88961 (rank : 176)	NC score	0.010261 (rank : 275)
Query Neighborhood Hits	197	Target Neighborhood Hits	339	Shared Neighborhood Hits	16
SwissProt Accessions	Q91YD9	Gene names	Wasl
Domain Architecture	No domain graphic available
Description	Neural Wiskott-Aldrich syndrome protein (N-WASP).

ZHX3_HUMAN
θ value	6.88961 (rank : 177)	NC score	0.094016 (rank : 59)
Query Neighborhood Hits	197	Target Neighborhood Hits	331	Shared Neighborhood Hits	67
SwissProt Accessions	Q9H4I2, O43145	Gene names	ZHX3, KIAA0395, TIX1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

ZHX3_MOUSE
θ value	6.88961 (rank : 178)	NC score	0.119345 (rank : 54)
Query Neighborhood Hits	197	Target Neighborhood Hits	321	Shared Neighborhood Hits	72
SwissProt Accessions	Q8C0Q2, Q80U14	Gene names	Zhx3, Kiaa0395, Tix1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

ACINU_HUMAN
θ value	8.99809 (rank : 179)	NC score	0.019829 (rank : 244)
Query Neighborhood Hits	197	Target Neighborhood Hits	828	Shared Neighborhood Hits	25
SwissProt Accessions	Q9UKV3, O75158, Q9UG91, Q9UKV1, Q9UKV2	Gene names	ACIN1, ACINUS, KIAA0670
Domain Architecture
Description	Apoptotic chromatin condensation inducer in the nucleus (Acinus).

ALX3_HUMAN
θ value	8.99809 (rank : 180)	NC score	0.068524 (rank : 111)
Query Neighborhood Hits	197	Target Neighborhood Hits	380	Shared Neighborhood Hits	87
SwissProt Accessions	O95076, O95075	Gene names	ALX3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

ALX4_MOUSE
θ value	8.99809 (rank : 181)	NC score	0.066563 (rank : 116)
Query Neighborhood Hits	197	Target Neighborhood Hits	369	Shared Neighborhood Hits	89
SwissProt Accessions	O35137	Gene names	Alx4
Domain Architecture
Description	Homeobox protein aristaless-like 4 (ALX-4).

AMHR2_HUMAN
θ value	8.99809 (rank : 182)	NC score	-0.000664 (rank : 296)
Query Neighborhood Hits	197	Target Neighborhood Hits	715	Shared Neighborhood Hits	11
SwissProt Accessions	Q16671, Q13762	Gene names	AMHR2, AMHR
Domain Architecture
Description	Anti-Muellerian hormone type-2 receptor precursor (EC 2.7.11.30) (Anti-Muellerian hormone type II receptor) (AMH type II receptor) (MIS type II receptor) (MISRII) (MRII).

BORG5_MOUSE
θ value	8.99809 (rank : 183)	NC score	0.007724 (rank : 280)
Query Neighborhood Hits	197	Target Neighborhood Hits	61	Shared Neighborhood Hits	5
SwissProt Accessions	Q91W92, Q9D8M1	Gene names	Cdc42ep1, Borg5, Cep1
Domain Architecture	No domain graphic available
Description	Cdc42 effector protein 1 (Binder of Rho GTPases 5).

CCDC4_HUMAN
θ value	8.99809 (rank : 184)	NC score	0.012739 (rank : 265)
Query Neighborhood Hits	197	Target Neighborhood Hits	104	Shared Neighborhood Hits	8
SwissProt Accessions	Q6ZU67, Q58A26, Q58A27	Gene names	CCDC4
Domain Architecture	No domain graphic available
Description	Coiled-coil domain-containing protein 4.

DDB1_HUMAN
θ value	8.99809 (rank : 185)	NC score	0.012842 (rank : 263)
Query Neighborhood Hits	197	Target Neighborhood Hits	15	Shared Neighborhood Hits	3
SwissProt Accessions	Q16531, O15176, Q13289, Q58F96	Gene names	DDB1
Domain Architecture
Description	DNA damage-binding protein 1 (Damage-specific DNA-binding protein 1) (UV-damaged DNA-binding factor) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) (Xeroderma pigmentosum group E- complementing protein) (XPCe) (XPE-binding factor) (XPE-BF) (X- associated protein 1) (XAP-1).

EP400_HUMAN
θ value	8.99809 (rank : 186)	NC score	0.008893 (rank : 276)
Query Neighborhood Hits	197	Target Neighborhood Hits	556	Shared Neighborhood Hits	32
SwissProt Accessions	Q96L91, O15411, Q6P2F5, Q8N8Q7, Q8NE05, Q96JK7, Q9P230	Gene names	EP400, CAGH32, KIAA1498, KIAA1818, TNRC12
Domain Architecture	No domain graphic available
Description	E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa SWI2/SNF2-related protein) (Domino homolog) (hDomino) (CAG repeat protein 32) (Trinucleotide repeat-containing gene 12 protein).

HNF6_HUMAN
θ value	8.99809 (rank : 187)	NC score	0.145649 (rank : 50)
Query Neighborhood Hits	197	Target Neighborhood Hits	127	Shared Neighborhood Hits	47
SwissProt Accessions	Q9UBC0, Q99744, Q9UMR6	Gene names	ONECUT1, HNF6, HNF6A
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

HNF6_MOUSE
θ value	8.99809 (rank : 188)	NC score	0.140920 (rank : 51)
Query Neighborhood Hits	197	Target Neighborhood Hits	124	Shared Neighborhood Hits	47
SwissProt Accessions	O08755	Gene names	Onecut1, Hnf6, Hnf6a
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

LATS1_MOUSE
θ value	8.99809 (rank : 189)	NC score	-0.001676 (rank : 298)
Query Neighborhood Hits	197	Target Neighborhood Hits	1027	Shared Neighborhood Hits	16
SwissProt Accessions	Q8BYR2, Q9Z0W4	Gene names	Lats1, Warts
Domain Architecture	No domain graphic available
Description	Serine/threonine-protein kinase LATS1 (EC 2.7.11.1) (Large tumor suppressor homolog 1) (WARTS protein kinase).

MAP1B_MOUSE
θ value	8.99809 (rank : 190)	NC score	0.012230 (rank : 267)
Query Neighborhood Hits	197	Target Neighborhood Hits	977	Shared Neighborhood Hits	36
SwissProt Accessions	P14873	Gene names	Map1b, Mtap1b, Mtap5
Domain Architecture	No domain graphic available
Description	Microtubule-associated protein 1B (MAP 1B) (MAP1.2) (MAP1(X)) [Contains: MAP1 light chain LC1].

MTR1L_HUMAN
θ value	8.99809 (rank : 191)	NC score	-0.001868 (rank : 300)
Query Neighborhood Hits	197	Target Neighborhood Hits	1180	Shared Neighborhood Hits	34
SwissProt Accessions	Q13585	Gene names	GPR50
Domain Architecture
Description	Melatonin-related receptor (G protein-coupled receptor 50) (H9).

NALP5_MOUSE
θ value	8.99809 (rank : 192)	NC score	0.002765 (rank : 292)
Query Neighborhood Hits	197	Target Neighborhood Hits	560	Shared Neighborhood Hits	14
SwissProt Accessions	Q9R1M5, Q9JLR2	Gene names	Nalp5, Mater
Domain Architecture
Description	NACHT, LRR and PYD-containing protein 5 (Maternal antigen that embryos require) (Mater protein) (Ooplasm-specific protein 1) (OP1).

PABP1_MOUSE
θ value	8.99809 (rank : 193)	NC score	0.004658 (rank : 288)
Query Neighborhood Hits	197	Target Neighborhood Hits	278	Shared Neighborhood Hits	10
SwissProt Accessions	P29341	Gene names	Pabpc1, Pabp1
Domain Architecture
Description	Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1).

PRRXL_MOUSE
θ value	8.99809 (rank : 194)	NC score	0.069681 (rank : 103)
Query Neighborhood Hits	197	Target Neighborhood Hits	350	Shared Neighborhood Hits	88
SwissProt Accessions	Q8BYH0, Q8K3F8	Gene names	Prrxl1, Drg11
Domain Architecture	No domain graphic available
Description	Paired-related homeobox protein-like 1 (Dorsal root ganglion 11) (Homeobox protein DRG11).

SYN2_HUMAN
θ value	8.99809 (rank : 195)	NC score	0.006370 (rank : 284)
Query Neighborhood Hits	197	Target Neighborhood Hits	213	Shared Neighborhood Hits	13
SwissProt Accessions	Q92777	Gene names	SYN2
Domain Architecture
Description	Synapsin-2 (Synapsin II).

WASIP_HUMAN
θ value	8.99809 (rank : 196)	NC score	0.022675 (rank : 231)
Query Neighborhood Hits	197	Target Neighborhood Hits	458	Shared Neighborhood Hits	27
SwissProt Accessions	O43516, Q15220, Q6MZU9, Q9BU37, Q9UNP1	Gene names	WASPIP, WIP
Domain Architecture	No domain graphic available
Description	Wiskott-Aldrich syndrome protein-interacting protein (WASP-interacting protein) (PRPL-2 protein).

YLPM1_HUMAN
θ value	8.99809 (rank : 197)	NC score	0.013746 (rank : 260)
Query Neighborhood Hits	197	Target Neighborhood Hits	670	Shared Neighborhood Hits	34
SwissProt Accessions	P49750, P49752, Q96I64, Q9P1V7	Gene names	YLPM1, C14orf170, ZAP3
Domain Architecture
Description	YLP motif-containing protein 1 (Nuclear protein ZAP3) (ZAP113).

ALX3_MOUSE
θ value	θ > 10 (rank : 198)	NC score	0.067882 (rank : 113)
Query Neighborhood Hits	197	Target Neighborhood Hits	386	Shared Neighborhood Hits	85
SwissProt Accessions	O70137	Gene names	Alx3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

ALX4_HUMAN
θ value	θ > 10 (rank : 199)	NC score	0.062570 (rank : 143)
Query Neighborhood Hits	197	Target Neighborhood Hits	394	Shared Neighborhood Hits	86
SwissProt Accessions	Q9H161, Q96JN7, Q9H198, Q9HAY9	Gene names	ALX4, KIAA1788
Domain Architecture
Description	Homeobox protein aristaless-like 4.

BARX2_HUMAN
θ value	θ > 10 (rank : 200)	NC score	0.070379 (rank : 99)
Query Neighborhood Hits	197	Target Neighborhood Hits	387	Shared Neighborhood Hits	80
SwissProt Accessions	Q9UMQ3, O43518	Gene names	BARX2
Domain Architecture
Description	Homeobox protein BarH-like 2.

BARX2_MOUSE
θ value	θ > 10 (rank : 201)	NC score	0.066204 (rank : 118)
Query Neighborhood Hits	197	Target Neighborhood Hits	335	Shared Neighborhood Hits	79
SwissProt Accessions	O08686	Gene names	Barx2
Domain Architecture
Description	Homeobox protein BarH-like 2.

BSH_MOUSE
θ value	θ > 10 (rank : 202)	NC score	0.081632 (rank : 69)
Query Neighborhood Hits	197	Target Neighborhood Hits	349	Shared Neighborhood Hits	88
SwissProt Accessions	Q810B3	Gene names	Bsx
Domain Architecture	No domain graphic available
Description	Brain-specific homeobox protein homolog.

CDX1_MOUSE
θ value	θ > 10 (rank : 203)	NC score	0.053567 (rank : 180)
Query Neighborhood Hits	197	Target Neighborhood Hits	379	Shared Neighborhood Hits	73
SwissProt Accessions	P18111, Q8VCF7	Gene names	Cdx1, Cdx-1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

CDX4_HUMAN
θ value	θ > 10 (rank : 204)	NC score	0.051952 (rank : 189)
Query Neighborhood Hits	197	Target Neighborhood Hits	366	Shared Neighborhood Hits	82
SwissProt Accessions	O14627, Q5JS20	Gene names	CDX4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

CDX4_MOUSE
θ value	θ > 10 (rank : 205)	NC score	0.054739 (rank : 175)
Query Neighborhood Hits	197	Target Neighborhood Hits	378	Shared Neighborhood Hits	79
SwissProt Accessions	Q07424	Gene names	Cdx4, Cdx-4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

DBX1_MOUSE
θ value	θ > 10 (rank : 206)	NC score	0.054713 (rank : 176)
Query Neighborhood Hits	197	Target Neighborhood Hits	346	Shared Neighborhood Hits	74
SwissProt Accessions	P52950	Gene names	Dbx1, Dbx
Domain Architecture
Description	Homeobox protein DBX1.

DLX1_HUMAN
θ value	θ > 10 (rank : 207)	NC score	0.071104 (rank : 94)
Query Neighborhood Hits	197	Target Neighborhood Hits	343	Shared Neighborhood Hits	88
SwissProt Accessions	P56177, Q53ZU4, Q8IYB2	Gene names	DLX1
Domain Architecture
Description	Homeobox protein DLX-1.

DLX1_MOUSE
θ value	θ > 10 (rank : 208)	NC score	0.071120 (rank : 93)
Query Neighborhood Hits	197	Target Neighborhood Hits	343	Shared Neighborhood Hits	88
SwissProt Accessions	Q64317	Gene names	Dlx1
Domain Architecture
Description	Homeobox protein DLX-1.

DLX2_HUMAN
θ value	θ > 10 (rank : 209)	NC score	0.057427 (rank : 164)
Query Neighborhood Hits	197	Target Neighborhood Hits	355	Shared Neighborhood Hits	84
SwissProt Accessions	Q07687	Gene names	DLX2
Domain Architecture
Description	Homeobox protein DLX-2.

DLX2_MOUSE
θ value	θ > 10 (rank : 210)	NC score	0.057642 (rank : 163)
Query Neighborhood Hits	197	Target Neighborhood Hits	352	Shared Neighborhood Hits	84
SwissProt Accessions	P40764	Gene names	Dlx2, Tes-1, Tes1
Domain Architecture
Description	Homeobox protein DLX-2 (Homeobox protein TES-1).

DLX3_HUMAN
θ value	θ > 10 (rank : 211)	NC score	0.068691 (rank : 110)
Query Neighborhood Hits	197	Target Neighborhood Hits	369	Shared Neighborhood Hits	87
SwissProt Accessions	O60479	Gene names	DLX3
Domain Architecture
Description	Homeobox protein DLX-3.

DLX3_MOUSE
θ value	θ > 10 (rank : 212)	NC score	0.065133 (rank : 127)
Query Neighborhood Hits	197	Target Neighborhood Hits	367	Shared Neighborhood Hits	87
SwissProt Accessions	Q64205	Gene names	Dlx3
Domain Architecture
Description	Homeobox protein DLX-3.

DLX5_HUMAN
θ value	θ > 10 (rank : 213)	NC score	0.064749 (rank : 133)
Query Neighborhood Hits	197	Target Neighborhood Hits	405	Shared Neighborhood Hits	92
SwissProt Accessions	P56178, Q9UPL1	Gene names	DLX5
Domain Architecture
Description	Homeobox protein DLX-5.

DLX5_MOUSE
θ value	θ > 10 (rank : 214)	NC score	0.069079 (rank : 109)
Query Neighborhood Hits	197	Target Neighborhood Hits	434	Shared Neighborhood Hits	94
SwissProt Accessions	P70396, O54876, O54877, O54878, Q9JJ45	Gene names	Dlx5
Domain Architecture
Description	Homeobox protein DLX-5.

DUX1_HUMAN
θ value	θ > 10 (rank : 215)	NC score	0.071082 (rank : 95)
Query Neighborhood Hits	197	Target Neighborhood Hits	330	Shared Neighborhood Hits	77
SwissProt Accessions	O43812	Gene names	DUX1
Domain Architecture	No domain graphic available
Description	Double homeobox protein 1.

DUX3_HUMAN
θ value	θ > 10 (rank : 216)	NC score	0.065258 (rank : 126)
Query Neighborhood Hits	197	Target Neighborhood Hits	312	Shared Neighborhood Hits	77
SwissProt Accessions	Q96PT4, Q9UND2	Gene names	DUX3
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 3.

DUX4_HUMAN
θ value	θ > 10 (rank : 217)	NC score	0.067945 (rank : 112)
Query Neighborhood Hits	197	Target Neighborhood Hits	403	Shared Neighborhood Hits	82
SwissProt Accessions	Q9UBX2	Gene names	DUX4, DUX10
Domain Architecture	No domain graphic available
Description	Double homeobox protein 4 (Double homeobox protein 10) (Double homeobox protein 4/10).

DUX5_HUMAN
θ value	θ > 10 (rank : 218)	NC score	0.070695 (rank : 97)
Query Neighborhood Hits	197	Target Neighborhood Hits	330	Shared Neighborhood Hits	77
SwissProt Accessions	Q96PT3	Gene names	DUX5
Domain Architecture	No domain graphic available
Description	Double homeobox protein 5.

GSC_HUMAN
θ value	θ > 10 (rank : 219)	NC score	0.061135 (rank : 152)
Query Neighborhood Hits	197	Target Neighborhood Hits	369	Shared Neighborhood Hits	87
SwissProt Accessions	P56915, Q86YR1	Gene names	GSC
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid.

GSC_MOUSE
θ value	θ > 10 (rank : 220)	NC score	0.060266 (rank : 155)
Query Neighborhood Hits	197	Target Neighborhood Hits	368	Shared Neighborhood Hits	85
SwissProt Accessions	Q02591	Gene names	Gsc
Domain Architecture
Description	Homeobox protein goosecoid.

GSH2_HUMAN
θ value	θ > 10 (rank : 221)	NC score	0.051599 (rank : 192)
Query Neighborhood Hits	197	Target Neighborhood Hits	324	Shared Neighborhood Hits	77
SwissProt Accessions	Q9BZM3	Gene names	GSH2
Domain Architecture
Description	Homeobox protein GSH-2.

GSH2_MOUSE
θ value	θ > 10 (rank : 222)	NC score	0.052707 (rank : 185)
Query Neighborhood Hits	197	Target Neighborhood Hits	319	Shared Neighborhood Hits	76
SwissProt Accessions	P31316	Gene names	Gsh2, Gsh-2
Domain Architecture
Description	Homeobox protein GSH-2.

HESX1_MOUSE
θ value	θ > 10 (rank : 223)	NC score	0.051380 (rank : 194)
Query Neighborhood Hits	197	Target Neighborhood Hits	331	Shared Neighborhood Hits	72
SwissProt Accessions	Q61658, Q61047	Gene names	Hesx1, Hes-1, Rpx
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (Anterior- restricted homeobox protein) (Rathke pouch homeo box).

HHEX_HUMAN
θ value	θ > 10 (rank : 224)	NC score	0.051463 (rank : 193)
Query Neighborhood Hits	197	Target Neighborhood Hits	358	Shared Neighborhood Hits	71
SwissProt Accessions	Q03014	Gene names	HHEX, HEX, PRH, PRHX
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

HLXB9_HUMAN
θ value	θ > 10 (rank : 225)	NC score	0.052767 (rank : 184)
Query Neighborhood Hits	197	Target Neighborhood Hits	336	Shared Neighborhood Hits	79
SwissProt Accessions	P50219, Q9Y648	Gene names	HLXB9
Domain Architecture
Description	Homeobox protein HB9.

HLXB9_MOUSE
θ value	θ > 10 (rank : 226)	NC score	0.050336 (rank : 204)
Query Neighborhood Hits	197	Target Neighborhood Hits	354	Shared Neighborhood Hits	82
SwissProt Accessions	Q9QZW9	Gene names	Hlxb9
Domain Architecture
Description	Homeobox protein HB9.

HMBX1_HUMAN
θ value	θ > 10 (rank : 227)	NC score	0.055652 (rank : 170)
Query Neighborhood Hits	197	Target Neighborhood Hits	118	Shared Neighborhood Hits	29
SwissProt Accessions	Q6NT76, Q3Y6P1, Q96GS5, Q9H701	Gene names	HMBOX1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

HME1_HUMAN
θ value	θ > 10 (rank : 228)	NC score	0.058177 (rank : 160)
Query Neighborhood Hits	197	Target Neighborhood Hits	384	Shared Neighborhood Hits	81
SwissProt Accessions	Q05925	Gene names	EN1
Domain Architecture
Description	Homeobox protein engrailed-1 (Hu-En-1).

HME1_MOUSE
θ value	θ > 10 (rank : 229)	NC score	0.057953 (rank : 161)
Query Neighborhood Hits	197	Target Neighborhood Hits	397	Shared Neighborhood Hits	82
SwissProt Accessions	P09065	Gene names	En1, En-1
Domain Architecture
Description	Homeobox protein engrailed-1 (Mo-En-1).

HME2_HUMAN
θ value	θ > 10 (rank : 230)	NC score	0.065912 (rank : 120)
Query Neighborhood Hits	197	Target Neighborhood Hits	355	Shared Neighborhood Hits	86
SwissProt Accessions	P19622	Gene names	EN2
Domain Architecture
Description	Homeobox protein engrailed-2 (Hu-En-2).

HME2_MOUSE
θ value	θ > 10 (rank : 231)	NC score	0.065727 (rank : 121)
Query Neighborhood Hits	197	Target Neighborhood Hits	352	Shared Neighborhood Hits	86
SwissProt Accessions	P09066	Gene names	En2, En-2
Domain Architecture
Description	Homeobox protein engrailed-2 (Mo-En-2).

HMX2_MOUSE
θ value	θ > 10 (rank : 232)	NC score	0.050543 (rank : 201)
Query Neighborhood Hits	197	Target Neighborhood Hits	354	Shared Neighborhood Hits	80
SwissProt Accessions	P43687, Q8R1Q2	Gene names	Hmx2, Nkx-5.2, Nkx5-2
Domain Architecture
Description	Homeobox protein HMX2 (Homeobox protein Nkx-5.2).

HXA10_HUMAN
θ value	θ > 10 (rank : 233)	NC score	0.062193 (rank : 147)
Query Neighborhood Hits	197	Target Neighborhood Hits	334	Shared Neighborhood Hits	79
SwissProt Accessions	P31260, O43370, O43605, Q15949	Gene names	HOXA10, HOX1H
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL).

HXA10_MOUSE
θ value	θ > 10 (rank : 234)	NC score	0.061206 (rank : 151)
Query Neighborhood Hits	197	Target Neighborhood Hits	365	Shared Neighborhood Hits	81
SwissProt Accessions	P31310, Q80Y22	Gene names	Hoxa10, Hox-1.8, Hoxa-10
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1.8).

HXA11_HUMAN
θ value	θ > 10 (rank : 235)	NC score	0.050969 (rank : 199)
Query Neighborhood Hits	197	Target Neighborhood Hits	334	Shared Neighborhood Hits	65
SwissProt Accessions	P31270	Gene names	HOXA11, HOX1I
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1I).

HXA11_MOUSE
θ value	θ > 10 (rank : 236)	NC score	0.051347 (rank : 195)
Query Neighborhood Hits	197	Target Neighborhood Hits	327	Shared Neighborhood Hits	64
SwissProt Accessions	P31311, Q3V026	Gene names	Hoxa11, Hox-1.9, Hoxa-11
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1.9).

HXA1_HUMAN
θ value	θ > 10 (rank : 237)	NC score	0.061697 (rank : 149)
Query Neighborhood Hits	197	Target Neighborhood Hits	334	Shared Neighborhood Hits	78
SwissProt Accessions	P49639, O43363	Gene names	HOXA1, HOX1F
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1F).

HXA1_MOUSE
θ value	θ > 10 (rank : 238)	NC score	0.062581 (rank : 142)
Query Neighborhood Hits	197	Target Neighborhood Hits	341	Shared Neighborhood Hits	80
SwissProt Accessions	P09022, P15463	Gene names	Hoxa1, Era-1, Hox-1.6, Hoxa-1
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399).

HXA3_HUMAN
θ value	θ > 10 (rank : 239)	NC score	0.051095 (rank : 197)
Query Neighborhood Hits	197	Target Neighborhood Hits	535	Shared Neighborhood Hits	90
SwissProt Accessions	O43365	Gene names	HOXA3, HOX1E
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1E).

HXA6_HUMAN
θ value	θ > 10 (rank : 240)	NC score	0.057812 (rank : 162)
Query Neighborhood Hits	197	Target Neighborhood Hits	309	Shared Neighborhood Hits	74
SwissProt Accessions	P31267, Q9UPM0	Gene names	HOXA6, HOX1B
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A6 (Hox-1B).

HXA6_MOUSE
θ value	θ > 10 (rank : 241)	NC score	0.055666 (rank : 169)
Query Neighborhood Hits	197	Target Neighborhood Hits	304	Shared Neighborhood Hits	72
SwissProt Accessions	P09092, Q9JI98	Gene names	Hoxa6, Hox-1.2, Hoxa-6
Domain Architecture
Description	Homeobox protein Hox-A6 (Hox-1.2) (M5-4).

HXA7_HUMAN
θ value	θ > 10 (rank : 242)	NC score	0.054965 (rank : 174)
Query Neighborhood Hits	197	Target Neighborhood Hits	309	Shared Neighborhood Hits	71
SwissProt Accessions	P31268, O43368, O43486, O95655, Q9NSC8, Q9UDM1	Gene names	HOXA7, HOX1A
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1).

HXA7_MOUSE
θ value	θ > 10 (rank : 243)	NC score	0.061925 (rank : 148)
Query Neighborhood Hits	197	Target Neighborhood Hits	318	Shared Neighborhood Hits	73
SwissProt Accessions	P02830, Q544P0	Gene names	Hoxa7, Hox-1.1, Hoxa-7
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1.1) (M6-12) (M6).

HXB1_HUMAN
θ value	θ > 10 (rank : 244)	NC score	0.056633 (rank : 165)
Query Neighborhood Hits	197	Target Neighborhood Hits	356	Shared Neighborhood Hits	80
SwissProt Accessions	P14653	Gene names	HOXB1, HOX2I
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2I).

HXB1_MOUSE
θ value	θ > 10 (rank : 245)	NC score	0.056527 (rank : 166)
Query Neighborhood Hits	197	Target Neighborhood Hits	341	Shared Neighborhood Hits	80
SwissProt Accessions	P17919, Q3ZAY6, Q9CYH3	Gene names	Hoxb1, Hox-2.9, Hoxb-1
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2.9).

HXB6_HUMAN
θ value	θ > 10 (rank : 246)	NC score	0.053424 (rank : 181)
Query Neighborhood Hits	197	Target Neighborhood Hits	307	Shared Neighborhood Hits	72
SwissProt Accessions	P17509, P09068, Q9HB11, Q9UGH2	Gene names	HOXB6, HOX2B
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2).

HXB6_MOUSE
θ value	θ > 10 (rank : 247)	NC score	0.053343 (rank : 183)
Query Neighborhood Hits	197	Target Neighborhood Hits	309	Shared Neighborhood Hits	72
SwissProt Accessions	P09023	Gene names	Hoxb6, Hox-2.2, Hoxb-6
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2.2) (Homeobox protein MH-22A).

HXB7_HUMAN
θ value	θ > 10 (rank : 248)	NC score	0.058725 (rank : 159)
Query Neighborhood Hits	197	Target Neighborhood Hits	311	Shared Neighborhood Hits	72
SwissProt Accessions	P09629, Q15957	Gene names	HOXB7, HOX2C
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2C) (HHO.C1).

HXB7_MOUSE
θ value	θ > 10 (rank : 249)	NC score	0.060393 (rank : 154)
Query Neighborhood Hits	197	Target Neighborhood Hits	314	Shared Neighborhood Hits	72
SwissProt Accessions	P09024, Q3UW15	Gene names	Hoxb7, Hox-2.3, Hoxb-7
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2.3) (MUB1) (Homeobox protein MH-22B).

HXB8_HUMAN
θ value	θ > 10 (rank : 250)	NC score	0.070879 (rank : 96)
Query Neighborhood Hits	197	Target Neighborhood Hits	324	Shared Neighborhood Hits	73
SwissProt Accessions	P17481, Q9H1I2	Gene names	HOXB8, HOX2D
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4).

HXB8_MOUSE
θ value	θ > 10 (rank : 251)	NC score	0.070555 (rank : 98)
Query Neighborhood Hits	197	Target Neighborhood Hits	325	Shared Neighborhood Hits	74
SwissProt Accessions	P09632	Gene names	Hoxb8, Hox-2.4, Hoxb-8
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2.4).

HXC11_HUMAN
θ value	θ > 10 (rank : 252)	NC score	0.059883 (rank : 156)
Query Neighborhood Hits	197	Target Neighborhood Hits	349	Shared Neighborhood Hits	77
SwissProt Accessions	O43248, Q96DH2	Gene names	HOXC11
Domain Architecture
Description	Homeobox protein Hox-C11.

HXC8_HUMAN
θ value	θ > 10 (rank : 253)	NC score	0.075933 (rank : 83)
Query Neighborhood Hits	197	Target Neighborhood Hits	327	Shared Neighborhood Hits	78
SwissProt Accessions	P31273, O15221, O15362	Gene names	HOXC8, HOX3A
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3A).

HXC8_MOUSE
θ value	θ > 10 (rank : 254)	NC score	0.075942 (rank : 82)
Query Neighborhood Hits	197	Target Neighborhood Hits	327	Shared Neighborhood Hits	78
SwissProt Accessions	P09025	Gene names	Hoxc8, Hox-3.1, Hoxc-8
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3.1) (M31).

HXD11_HUMAN
θ value	θ > 10 (rank : 255)	NC score	0.062636 (rank : 141)
Query Neighborhood Hits	197	Target Neighborhood Hits	353	Shared Neighborhood Hits	80
SwissProt Accessions	P31277, Q9NS02	Gene names	HOXD11, HOX4F
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4F).

HXD11_MOUSE
θ value	θ > 10 (rank : 256)	NC score	0.060999 (rank : 153)
Query Neighborhood Hits	197	Target Neighborhood Hits	376	Shared Neighborhood Hits	82
SwissProt Accessions	P23813	Gene names	Hoxd11, Hox-4.6, Hoxd-11
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5).

HXD1_HUMAN
θ value	θ > 10 (rank : 257)	NC score	0.053381 (rank : 182)
Query Neighborhood Hits	197	Target Neighborhood Hits	337	Shared Neighborhood Hits	78
SwissProt Accessions	Q9GZZ0	Gene names	HOXD1
Domain Architecture
Description	Homeobox protein Hox-D1.

HXD1_MOUSE
θ value	θ > 10 (rank : 258)	NC score	0.055884 (rank : 168)
Query Neighborhood Hits	197	Target Neighborhood Hits	381	Shared Neighborhood Hits	79
SwissProt Accessions	Q01822	Gene names	Hoxd1, Hox-4.9, Hoxd-1
Domain Architecture
Description	Homeobox protein Hox-D1 (Hox-4.9).

HXD3_MOUSE
θ value	θ > 10 (rank : 259)	NC score	0.050029 (rank : 207)
Query Neighborhood Hits	197	Target Neighborhood Hits	435	Shared Neighborhood Hits	86
SwissProt Accessions	P09027, Q3UUD3	Gene names	Hoxd3, Hox-4.1, Hoxd-3
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4.1) (Homeobox protein MH-19).

HXD8_HUMAN
θ value	θ > 10 (rank : 260)	NC score	0.069304 (rank : 107)
Query Neighborhood Hits	197	Target Neighborhood Hits	338	Shared Neighborhood Hits	77
SwissProt Accessions	P13378	Gene names	HOXD8, HOX4E
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4).

HXD8_MOUSE
θ value	θ > 10 (rank : 261)	NC score	0.069987 (rank : 100)
Query Neighborhood Hits	197	Target Neighborhood Hits	333	Shared Neighborhood Hits	76
SwissProt Accessions	P23463	Gene names	Hoxd8, Hox-4.3, Hoxd-8
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4).

ISL2_MOUSE
θ value	θ > 10 (rank : 262)	NC score	0.061355 (rank : 150)
Query Neighborhood Hits	197	Target Neighborhood Hits	426	Shared Neighborhood Hits	77
SwissProt Accessions	Q9CXV0	Gene names	Isl2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

LHX1_HUMAN
θ value	θ > 10 (rank : 263)	NC score	0.055044 (rank : 173)
Query Neighborhood Hits	197	Target Neighborhood Hits	453	Shared Neighborhood Hits	80
SwissProt Accessions	P48742, Q3MIW0	Gene names	LHX1, LIM1
Domain Architecture
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

LHX1_MOUSE
θ value	θ > 10 (rank : 264)	NC score	0.056102 (rank : 167)
Query Neighborhood Hits	197	Target Neighborhood Hits	453	Shared Neighborhood Hits	79
SwissProt Accessions	P63006, P36199	Gene names	Lhx1, Lim-1, Lim1
Domain Architecture	No domain graphic available
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

LHX3_HUMAN
θ value	θ > 10 (rank : 265)	NC score	0.050889 (rank : 200)
Query Neighborhood Hits	197	Target Neighborhood Hits	474	Shared Neighborhood Hits	95
SwissProt Accessions	Q9UBR4, Q9NZB5, Q9P0I8, Q9P0I9	Gene names	LHX3
Domain Architecture
Description	LIM/homeobox protein Lhx3.

LHX4_HUMAN
θ value	θ > 10 (rank : 266)	NC score	0.051801 (rank : 191)
Query Neighborhood Hits	197	Target Neighborhood Hits	455	Shared Neighborhood Hits	90
SwissProt Accessions	Q969G2, Q8NHE0, Q8TCJ1, Q8WWX2, Q969W2	Gene names	LHX4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

LHX4_MOUSE
θ value	θ > 10 (rank : 267)	NC score	0.051842 (rank : 190)
Query Neighborhood Hits	197	Target Neighborhood Hits	457	Shared Neighborhood Hits	90
SwissProt Accessions	P53776, O08916, Q9R280	Gene names	Lhx4, Gsh-4, Gsh4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

LHX5_HUMAN
θ value	θ > 10 (rank : 268)	NC score	0.059600 (rank : 157)
Query Neighborhood Hits	197	Target Neighborhood Hits	453	Shared Neighborhood Hits	79
SwissProt Accessions	Q9H2C1	Gene names	LHX5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

LHX5_MOUSE
θ value	θ > 10 (rank : 269)	NC score	0.059145 (rank : 158)
Query Neighborhood Hits	197	Target Neighborhood Hits	456	Shared Neighborhood Hits	79
SwissProt Accessions	P61375, P50459	Gene names	Lhx5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

NKX12_MOUSE
θ value	θ > 10 (rank : 270)	NC score	0.051237 (rank : 196)
Query Neighborhood Hits	197	Target Neighborhood Hits	332	Shared Neighborhood Hits	70
SwissProt Accessions	P42580, Q9JHF2, Q9JKW5, Q9JKW6, Q9JKW9, Q9JKX0, Q9JKX1	Gene names	Nkx1-2, Nkx1.1, Sax1
Domain Architecture
Description	NK1 transcription factor-related protein 2 (Homeobox protein SAX-1) (NKX-1.1).

NKX22_MOUSE
θ value	θ > 10 (rank : 271)	NC score	0.052150 (rank : 188)
Query Neighborhood Hits	197	Target Neighborhood Hits	336	Shared Neighborhood Hits	82
SwissProt Accessions	P42586	Gene names	Nkx2-2, Nkx-2.2, Nkx2b
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

NKX24_HUMAN
θ value	θ > 10 (rank : 272)	NC score	0.050483 (rank : 202)
Query Neighborhood Hits	197	Target Neighborhood Hits	366	Shared Neighborhood Hits	78
SwissProt Accessions	Q9H2Z4	Gene names	NKX2-4, NKX2D
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

NKX25_HUMAN
θ value	θ > 10 (rank : 273)	NC score	0.055350 (rank : 171)
Query Neighborhood Hits	197	Target Neighborhood Hits	338	Shared Neighborhood Hits	83
SwissProt Accessions	P52952	Gene names	NKX2-5, CSX, NKX2.5, NKX2E
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

NKX28_MOUSE
θ value	θ > 10 (rank : 274)	NC score	0.077331 (rank : 78)
Query Neighborhood Hits	197	Target Neighborhood Hits	347	Shared Neighborhood Hits	89
SwissProt Accessions	O70584	Gene names	Nkx2-8, Nkx-2.9, Nkx2-9, Nkx2h
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H) (Homeobox protein Nkx-2.9).

NKX61_HUMAN
θ value	θ > 10 (rank : 275)	NC score	0.062489 (rank : 144)
Query Neighborhood Hits	197	Target Neighborhood Hits	431	Shared Neighborhood Hits	84
SwissProt Accessions	P78426	Gene names	NKX6-1, NKX6A
Domain Architecture
Description	Homeobox protein Nkx-6.1.

NKX61_MOUSE
θ value	θ > 10 (rank : 276)	NC score	0.065369 (rank : 124)
Query Neighborhood Hits	197	Target Neighborhood Hits	439	Shared Neighborhood Hits	84
SwissProt Accessions	Q99MA9, Q9ERQ7	Gene names	Nkx6-1, Nkx6.1, Nkx6a
Domain Architecture
Description	Homeobox protein Nkx-6.1.

OTP_MOUSE
θ value	θ > 10 (rank : 277)	NC score	0.062390 (rank : 146)
Query Neighborhood Hits	197	Target Neighborhood Hits	387	Shared Neighborhood Hits	87
SwissProt Accessions	O09113	Gene names	Otp
Domain Architecture
Description	Homeobox protein orthopedia.

PAX3_HUMAN
θ value	θ > 10 (rank : 278)	NC score	0.066278 (rank : 117)
Query Neighborhood Hits	197	Target Neighborhood Hits	513	Shared Neighborhood Hits	100
SwissProt Accessions	P23760, Q16448	Gene names	PAX3, HUP2
Domain Architecture
Description	Paired box protein Pax-3 (HUP2).

PAX3_MOUSE
θ value	θ > 10 (rank : 279)	NC score	0.063650 (rank : 136)
Query Neighborhood Hits	197	Target Neighborhood Hits	478	Shared Neighborhood Hits	95
SwissProt Accessions	P24610, Q3UFQ9, Q8BRE7, Q9CXI6	Gene names	Pax3, Pax-3
Domain Architecture
Description	Paired box protein Pax-3.

PAX7_HUMAN
θ value	θ > 10 (rank : 280)	NC score	0.066762 (rank : 115)
Query Neighborhood Hits	197	Target Neighborhood Hits	456	Shared Neighborhood Hits	103
SwissProt Accessions	P23759	Gene names	PAX7, HUP1
Domain Architecture
Description	Paired box protein Pax-7 (HUP1).

PAX7_MOUSE
θ value	θ > 10 (rank : 281)	NC score	0.065579 (rank : 122)
Query Neighborhood Hits	197	Target Neighborhood Hits	422	Shared Neighborhood Hits	99
SwissProt Accessions	P47239, Q9ES16	Gene names	Pax7, Pax-7
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-7.

PEPP1_HUMAN
θ value	θ > 10 (rank : 282)	NC score	0.055074 (rank : 172)
Query Neighborhood Hits	197	Target Neighborhood Hits	338	Shared Neighborhood Hits	73
SwissProt Accessions	Q8NHV9, O95030, Q3SYE0	Gene names	PEPP1, OTEX
Domain Architecture
Description	Paired-like homeobox protein PEPP-1 (Ovary-, testis- and epididymis- expressed gene protein).

PITX1_HUMAN
θ value	θ > 10 (rank : 283)	NC score	0.064199 (rank : 135)
Query Neighborhood Hits	197	Target Neighborhood Hits	353	Shared Neighborhood Hits	83
SwissProt Accessions	P78337, O14677, O60425, Q9BTI5	Gene names	PITX1, BFT, PTX1
Domain Architecture
Description	Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot).

PITX1_MOUSE
θ value	θ > 10 (rank : 284)	NC score	0.072217 (rank : 92)
Query Neighborhood Hits	197	Target Neighborhood Hits	362	Shared Neighborhood Hits	90
SwissProt Accessions	P70314, O54742, P70427	Gene names	Pitx1, Bft, Potx, Ptx1
Domain Architecture
Description	Pituitary homeobox 1 (Homeobox protein P-OTX) (Pituitary OTX-related factor) (Hindlimb expressed homeobox protein backfoot) (Ptx1).

PITX2_HUMAN
θ value	θ > 10 (rank : 285)	NC score	0.083433 (rank : 67)
Query Neighborhood Hits	197	Target Neighborhood Hits	381	Shared Neighborhood Hits	95
SwissProt Accessions	Q99697, O60578, O60579, O60580, Q9BY17	Gene names	PITX2, ARP1, RGS, RIEG, RIEG1
Domain Architecture
Description	Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription factor) (Solurshin) (ALL1-responsive protein ARP1).

PITX2_MOUSE
θ value	θ > 10 (rank : 286)	NC score	0.083019 (rank : 68)
Query Neighborhood Hits	197	Target Neighborhood Hits	383	Shared Neighborhood Hits	93
SwissProt Accessions	P97474, O08646, O70336, P97933, Q9JLA0, Q9QXB8, Q9R1V9, Q9Z141	Gene names	Pitx2, Arp1, Brx1, Otlx2, Ptx2, Rgs
Domain Architecture
Description	Pituitary homeobox 2 (Orthodenticle-like homeobox 2) (Solurshin) (ALL1-responsive protein ARP1) (BRX1 homeoprotein) (Paired-like homeodomain transcription factor Munc 30).

PITX3_HUMAN
θ value	θ > 10 (rank : 287)	NC score	0.099012 (rank : 55)
Query Neighborhood Hits	197	Target Neighborhood Hits	366	Shared Neighborhood Hits	94
SwissProt Accessions	O75364	Gene names	PITX3, PTX3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

PITX3_MOUSE
θ value	θ > 10 (rank : 288)	NC score	0.098457 (rank : 56)
Query Neighborhood Hits	197	Target Neighborhood Hits	380	Shared Neighborhood Hits	97
SwissProt Accessions	O35160	Gene names	Pitx3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

PROP1_HUMAN
θ value	θ > 10 (rank : 289)	NC score	0.066193 (rank : 119)
Query Neighborhood Hits	197	Target Neighborhood Hits	354	Shared Neighborhood Hits	86
SwissProt Accessions	O75360	Gene names	PROP1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

PROP1_MOUSE
θ value	θ > 10 (rank : 290)	NC score	0.065526 (rank : 123)
Query Neighborhood Hits	197	Target Neighborhood Hits	361	Shared Neighborhood Hits	84
SwissProt Accessions	P97458	Gene names	Prop1, Prop-1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

PRRX1_HUMAN
θ value	θ > 10 (rank : 291)	NC score	0.052669 (rank : 186)
Query Neighborhood Hits	197	Target Neighborhood Hits	347	Shared Neighborhood Hits	83
SwissProt Accessions	P54821, O60807	Gene names	PRRX1, PMX1
Domain Architecture
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein PHOX1).

PRRX1_MOUSE
θ value	θ > 10 (rank : 292)	NC score	0.050330 (rank : 205)
Query Neighborhood Hits	197	Target Neighborhood Hits	346	Shared Neighborhood Hits	81
SwissProt Accessions	P63013, P43271, Q02810	Gene names	Prrx1, Pmx, Pmx1
Domain Architecture	No domain graphic available
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein mHox) (Homeobox protein K-2).

PRRX2_HUMAN
θ value	θ > 10 (rank : 293)	NC score	0.050059 (rank : 206)
Query Neighborhood Hits	197	Target Neighborhood Hits	348	Shared Neighborhood Hits	82
SwissProt Accessions	Q99811, Q9UIB3	Gene names	PRRX2, PMX2, PRX2
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Paired-related homeobox protein 2).

PRRX2_MOUSE
θ value	θ > 10 (rank : 294)	NC score	0.050350 (rank : 203)
Query Neighborhood Hits	197	Target Neighborhood Hits	351	Shared Neighborhood Hits	81
SwissProt Accessions	Q06348, Q61651	Gene names	Prrx2, Prx2, S8
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Homeobox protein S8).

SHOX_HUMAN
θ value	θ > 10 (rank : 295)	NC score	0.053709 (rank : 179)
Query Neighborhood Hits	197	Target Neighborhood Hits	363	Shared Neighborhood Hits	76
SwissProt Accessions	O15266, O00412, O00413, O15267	Gene names	SHOX, PHOG
Domain Architecture
Description	Short stature homeobox protein (Short stature homeobox-containing protein) (Pseudoautosomal homeobox-containing osteogenic protein).

TITF1_HUMAN
θ value	θ > 10 (rank : 296)	NC score	0.053789 (rank : 178)
Query Neighborhood Hits	197	Target Neighborhood Hits	332	Shared Neighborhood Hits	75
SwissProt Accessions	P43699, O14954, O14955, Q9BRJ8	Gene names	TITF1, NKX2-1, NKX2A, TTF1
Domain Architecture
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1) (Homeobox protein NK-2 homolog A).

TITF1_MOUSE
θ value	θ > 10 (rank : 297)	NC score	0.052668 (rank : 187)
Query Neighborhood Hits	197	Target Neighborhood Hits	335	Shared Neighborhood Hits	75
SwissProt Accessions	P50220	Gene names	Titf1, Nkx-2.1, Nkx2-1, Ttf1
Domain Architecture	No domain graphic available
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1).

ZFHX2_HUMAN
θ value	θ > 10 (rank : 298)	NC score	0.051079 (rank : 198)
Query Neighborhood Hits	197	Target Neighborhood Hits	1178	Shared Neighborhood Hits	103
SwissProt Accessions	Q9C0A1	Gene names	ZFHX2, KIAA1762
Domain Architecture
Description	Zinc finger homeobox protein 2.

ZHX1_HUMAN
θ value	θ > 10 (rank : 299)	NC score	0.077750 (rank : 76)
Query Neighborhood Hits	197	Target Neighborhood Hits	307	Shared Neighborhood Hits	75
SwissProt Accessions	Q9UKY1, Q8IWD8	Gene names	ZHX1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

ZHX1_MOUSE
θ value	θ > 10 (rank : 300)	NC score	0.075055 (rank : 88)
Query Neighborhood Hits	197	Target Neighborhood Hits	334	Shared Neighborhood Hits	72
SwissProt Accessions	P70121, Q8BQ68, Q8C6T4, Q8CJG3	Gene names	Zhx1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

ZHX2_HUMAN
θ value	θ > 10 (rank : 301)	NC score	0.064976 (rank : 128)
Query Neighborhood Hits	197	Target Neighborhood Hits	347	Shared Neighborhood Hits	58
SwissProt Accessions	Q9Y6X8	Gene names	ZHX2, AFR1, KIAA0854, RAF
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

ZHX2_MOUSE
θ value	θ > 10 (rank : 302)	NC score	0.067438 (rank : 114)
Query Neighborhood Hits	197	Target Neighborhood Hits	435	Shared Neighborhood Hits	71
SwissProt Accessions	Q8C0C0	Gene names	Zhx2, Afr1, Raf
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

Hits sorted by NC score

PKNX2_MOUSE
NC score	0.999962 (rank : 1)	θ value	0 (rank : 2)
Query Neighborhood Hits	197	Target Neighborhood Hits	197	Shared Neighborhood Hits	197
SwissProt Accessions	Q8BG99, Q8R4B0	Gene names	Pknox2, Prep2
Domain Architecture	No domain graphic available
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

PKNX2_HUMAN
NC score	0.992144 (rank : 2)	θ value	0 (rank : 1)
Query Neighborhood Hits	197	Target Neighborhood Hits	133	Shared Neighborhood Hits	125
SwissProt Accessions	Q96KN3, Q63HL6, Q86XD1	Gene names	PKNOX2, PREP2
Domain Architecture
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

PKNX1_MOUSE
NC score	0.977256 (rank : 3)	θ value	8.9516e-133 (rank : 3)
Query Neighborhood Hits	197	Target Neighborhood Hits	103	Shared Neighborhood Hits	86
SwissProt Accessions	O70477	Gene names	Pknox1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1).

PKNX1_HUMAN
NC score	0.976506 (rank : 4)	θ value	3.4016e-132 (rank : 4)
Query Neighborhood Hits	197	Target Neighborhood Hits	101	Shared Neighborhood Hits	86
SwissProt Accessions	P55347, O00528, Q8IWT7	Gene names	PKNOX1, PREP1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1) (Homeobox protein PREP-1).

MEIS3_MOUSE
NC score	0.922411 (rank : 5)	θ value	4.69435e-57 (rank : 10)
Query Neighborhood Hits	197	Target Neighborhood Hits	118	Shared Neighborhood Hits	69
SwissProt Accessions	P97368, Q99L81	Gene names	Meis3, Mrg2
Domain Architecture
Description	Homeobox protein Meis3 (Meis1-related protein 2).

MEIS3_HUMAN
NC score	0.920423 (rank : 6)	θ value	9.45883e-58 (rank : 9)
Query Neighborhood Hits	197	Target Neighborhood Hits	118	Shared Neighborhood Hits	67
SwissProt Accessions	Q99687, Q6NT73, Q8TC66, Q9NPW2	Gene names	MEIS3, MRG2
Domain Architecture	No domain graphic available
Description	Homeobox protein Meis3 (Meis1-related protein 2).

MEIS1_MOUSE
NC score	0.919479 (rank : 7)	θ value	3.84025e-59 (rank : 8)
Query Neighborhood Hits	197	Target Neighborhood Hits	115	Shared Neighborhood Hits	70
SwissProt Accessions	Q60954, Q5SVC8, Q60955, Q8CIL0	Gene names	Meis1
Domain Architecture
Description	Homeobox protein Meis1 (Myeloid ecotropic viral integration site 1).

MEIS1_HUMAN
NC score	0.919428 (rank : 8)	θ value	3.84025e-59 (rank : 7)
Query Neighborhood Hits	197	Target Neighborhood Hits	115	Shared Neighborhood Hits	70
SwissProt Accessions	O00470	Gene names	MEIS1
Domain Architecture
Description	Homeobox protein Meis1.

MEIS2_HUMAN
NC score	0.906807 (rank : 9)	θ value	7.73779e-60 (rank : 5)
Query Neighborhood Hits	197	Target Neighborhood Hits	182	Shared Neighborhood Hits	71
SwissProt Accessions	O14770, Q96KI4, Q96KI5, Q9NRS1, Q9NRS2, Q9NRS3	Gene names	MEIS2, MRG1
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

MEIS2_MOUSE
NC score	0.903721 (rank : 10)	θ value	7.73779e-60 (rank : 6)
Query Neighborhood Hits	197	Target Neighborhood Hits	208	Shared Neighborhood Hits	74
SwissProt Accessions	P97367, O35676, O35677, P97403, P97404	Gene names	Meis2, Mrg1, Stra10
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

TF2LY_HUMAN
NC score	0.803227 (rank : 11)	θ value	1.52774e-15 (rank : 12)
Query Neighborhood Hits	197	Target Neighborhood Hits	90	Shared Neighborhood Hits	71
SwissProt Accessions	Q8IUE0	Gene names	TGIF2LY, TGIFLY
Domain Architecture
Description	Homeobox protein TGIF2LY (TGFB-induced factor 2-like protein, Y- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the Y).

TF2LX_HUMAN
NC score	0.792844 (rank : 12)	θ value	5.25075e-16 (rank : 11)
Query Neighborhood Hits	197	Target Neighborhood Hits	108	Shared Neighborhood Hits	77
SwissProt Accessions	Q8IUE1	Gene names	TGIF2LX, TGIFLX
Domain Architecture
Description	Homeobox protein TGIF2LX (TGFB-induced factor 2-like protein, X- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the X).

TGIF2_HUMAN
NC score	0.764015 (rank : 13)	θ value	4.44505e-15 (rank : 13)
Query Neighborhood Hits	197	Target Neighborhood Hits	94	Shared Neighborhood Hits	64
SwissProt Accessions	Q9GZN2	Gene names	TGIF2
Domain Architecture
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

TGIF2_MOUSE
NC score	0.758194 (rank : 14)	θ value	4.44505e-15 (rank : 14)
Query Neighborhood Hits	197	Target Neighborhood Hits	127	Shared Neighborhood Hits	69
SwissProt Accessions	Q8C0Y1	Gene names	Tgif2
Domain Architecture	No domain graphic available
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

TGIF_MOUSE
NC score	0.758104 (rank : 15)	θ value	9.90251e-15 (rank : 16)
Query Neighborhood Hits	197	Target Neighborhood Hits	125	Shared Neighborhood Hits	74
SwissProt Accessions	P70284, Q921F9, Q99JS3	Gene names	Tgif
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

TGIF_HUMAN
NC score	0.749001 (rank : 16)	θ value	5.8054e-15 (rank : 15)
Query Neighborhood Hits	197	Target Neighborhood Hits	109	Shared Neighborhood Hits	66
SwissProt Accessions	Q15583, Q6ICR0, Q8N5X9, Q9NRS0	Gene names	TGIF
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

IRX4_HUMAN
NC score	0.565026 (rank : 17)	θ value	1.80886e-08 (rank : 25)
Query Neighborhood Hits	197	Target Neighborhood Hits	276	Shared Neighborhood Hits	91
SwissProt Accessions	P78413, Q9UHR2	Gene names	IRX4, IRXA3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

IRX1_HUMAN
NC score	0.565013 (rank : 18)	θ value	5.26297e-08 (rank : 27)
Query Neighborhood Hits	197	Target Neighborhood Hits	285	Shared Neighborhood Hits	89
SwissProt Accessions	P78414, Q7Z2F8, Q8N312	Gene names	IRX1, IRXA1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

IRX3_HUMAN
NC score	0.564282 (rank : 19)	θ value	5.26297e-08 (rank : 29)
Query Neighborhood Hits	197	Target Neighborhood Hits	342	Shared Neighborhood Hits	92
SwissProt Accessions	P78415, Q7Z4A4, Q7Z4A5, Q8IVC6	Gene names	IRX3, IRXB1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

IRX1_MOUSE
NC score	0.564260 (rank : 20)	θ value	5.26297e-08 (rank : 28)
Query Neighborhood Hits	197	Target Neighborhood Hits	269	Shared Neighborhood Hits	88
SwissProt Accessions	P81068, O55120, Q9JLL6	Gene names	Irx1, Irxa1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

IRX6_HUMAN
NC score	0.564104 (rank : 21)	θ value	6.87365e-08 (rank : 35)
Query Neighborhood Hits	197	Target Neighborhood Hits	262	Shared Neighborhood Hits	89
SwissProt Accessions	P78412, Q7Z2K0	Gene names	IRX6, IRX7, IRXB3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

IRX3_MOUSE
NC score	0.563785 (rank : 22)	θ value	5.26297e-08 (rank : 30)
Query Neighborhood Hits	197	Target Neighborhood Hits	303	Shared Neighborhood Hits	86
SwissProt Accessions	P81067	Gene names	Irx3, Irxb1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

IRX6_MOUSE
NC score	0.563338 (rank : 23)	θ value	1.38499e-08 (rank : 24)
Query Neighborhood Hits	197	Target Neighborhood Hits	256	Shared Neighborhood Hits	88
SwissProt Accessions	Q9ER75	Gene names	Irx6, Irxb3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

IRX4_MOUSE
NC score	0.561477 (rank : 24)	θ value	1.80886e-08 (rank : 26)
Query Neighborhood Hits	197	Target Neighborhood Hits	286	Shared Neighborhood Hits	91
SwissProt Accessions	Q9QY61	Gene names	Irx4, Irxa3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

PBX4_MOUSE
NC score	0.553754 (rank : 25)	θ value	1.06045e-08 (rank : 23)
Query Neighborhood Hits	197	Target Neighborhood Hits	324	Shared Neighborhood Hits	99
SwissProt Accessions	Q99NE9, Q8CFL2, Q99NE8	Gene names	Pbx4
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 4 (Homeobox protein PBX4).

IRX2_MOUSE
NC score	0.551901 (rank : 26)	θ value	6.87365e-08 (rank : 32)
Query Neighborhood Hits	197	Target Neighborhood Hits	264	Shared Neighborhood Hits	84
SwissProt Accessions	P81066, O55121, Q9ERN1	Gene names	Irx2, Irxa2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

IRX5_HUMAN
NC score	0.545786 (rank : 27)	θ value	6.87365e-08 (rank : 33)
Query Neighborhood Hits	197	Target Neighborhood Hits	362	Shared Neighborhood Hits	94
SwissProt Accessions	P78411, P78416, Q7Z2E1	Gene names	IRX5, IRX2A, IRXB2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2) (IRX-2A).

IRX5_MOUSE
NC score	0.542990 (rank : 28)	θ value	6.87365e-08 (rank : 34)
Query Neighborhood Hits	197	Target Neighborhood Hits	324	Shared Neighborhood Hits	93
SwissProt Accessions	Q9JKQ4, Q80WV4, Q9JLL5	Gene names	Irx5, Irxb2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2).

IRX2_HUMAN
NC score	0.537564 (rank : 29)	θ value	6.87365e-08 (rank : 31)
Query Neighborhood Hits	197	Target Neighborhood Hits	358	Shared Neighborhood Hits	90
SwissProt Accessions	Q9BZI1, Q7Z2I7	Gene names	IRX2, IRXA2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

PBX2_HUMAN
NC score	0.536893 (rank : 30)	θ value	3.64472e-09 (rank : 19)
Query Neighborhood Hits	197	Target Neighborhood Hits	350	Shared Neighborhood Hits	100
SwissProt Accessions	P40425	Gene names	PBX2, G17
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2) (Protein G17).

PBX2_MOUSE
NC score	0.536788 (rank : 31)	θ value	3.64472e-09 (rank : 20)
Query Neighborhood Hits	197	Target Neighborhood Hits	341	Shared Neighborhood Hits	100
SwissProt Accessions	O35984	Gene names	Pbx2
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2).

PBX1_HUMAN
NC score	0.534466 (rank : 32)	θ value	8.11959e-09 (rank : 21)
Query Neighborhood Hits	197	Target Neighborhood Hits	317	Shared Neighborhood Hits	101
SwissProt Accessions	P40424	Gene names	PBX1, PRL
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1) (Homeobox protein PRL).

PBX1_MOUSE
NC score	0.534466 (rank : 33)	θ value	8.11959e-09 (rank : 22)
Query Neighborhood Hits	197	Target Neighborhood Hits	317	Shared Neighborhood Hits	101
SwissProt Accessions	P41778	Gene names	Pbx1, Pbx-1
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1).

PBX3_MOUSE
NC score	0.533800 (rank : 34)	θ value	2.52405e-10 (rank : 18)
Query Neighborhood Hits	197	Target Neighborhood Hits	306	Shared Neighborhood Hits	92
SwissProt Accessions	O35317, Q925W2	Gene names	Pbx3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX3_HUMAN
NC score	0.533767 (rank : 35)	θ value	2.52405e-10 (rank : 17)
Query Neighborhood Hits	197	Target Neighborhood Hits	306	Shared Neighborhood Hits	92
SwissProt Accessions	P40426, Q96PF9, Q96PG0	Gene names	PBX3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

SIX2_HUMAN
NC score	0.419056 (rank : 36)	θ value	0.000158464 (rank : 36)
Query Neighborhood Hits	197	Target Neighborhood Hits	345	Shared Neighborhood Hits	98
SwissProt Accessions	Q9NPC8, Q9BXH7	Gene names	SIX2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

SIX2_MOUSE
NC score	0.418691 (rank : 37)	θ value	0.000158464 (rank : 37)
Query Neighborhood Hits	197	Target Neighborhood Hits	376	Shared Neighborhood Hits	104
SwissProt Accessions	Q62232, P70179	Gene names	Six2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

SIX1_MOUSE
NC score	0.411670 (rank : 38)	θ value	0.00020696 (rank : 39)
Query Neighborhood Hits	197	Target Neighborhood Hits	341	Shared Neighborhood Hits	100
SwissProt Accessions	Q62231, Q8CIL7	Gene names	Six1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

SIX1_HUMAN
NC score	0.411194 (rank : 39)	θ value	0.00020696 (rank : 38)
Query Neighborhood Hits	197	Target Neighborhood Hits	343	Shared Neighborhood Hits	100
SwissProt Accessions	Q15475, Q96H64	Gene names	SIX1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

SIX6_MOUSE
NC score	0.392929 (rank : 40)	θ value	0.00020696 (rank : 43)
Query Neighborhood Hits	197	Target Neighborhood Hits	267	Shared Neighborhood Hits	93
SwissProt Accessions	Q9QZ28, O88423	Gene names	Six6, Optx2, Six9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Six9 protein).

SIX6_HUMAN
NC score	0.391970 (rank : 41)	θ value	0.00020696 (rank : 42)
Query Neighborhood Hits	197	Target Neighborhood Hits	269	Shared Neighborhood Hits	92
SwissProt Accessions	O95475, Q9P1X8	Gene names	SIX6, OPTX2, SIX9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Homeodomain protein OPTX2).

SIX3_HUMAN
NC score	0.390568 (rank : 42)	θ value	0.00020696 (rank : 40)
Query Neighborhood Hits	197	Target Neighborhood Hits	285	Shared Neighborhood Hits	94
SwissProt Accessions	O95343	Gene names	SIX3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX3_MOUSE
NC score	0.390519 (rank : 43)	θ value	0.00020696 (rank : 41)
Query Neighborhood Hits	197	Target Neighborhood Hits	289	Shared Neighborhood Hits	94
SwissProt Accessions	Q62233, P70176, P70177	Gene names	Six3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX5_MOUSE
NC score	0.365208 (rank : 44)	θ value	0.00035302 (rank : 45)
Query Neighborhood Hits	197	Target Neighborhood Hits	354	Shared Neighborhood Hits	95
SwissProt Accessions	P70178	Gene names	Six5, Dmahp
Domain Architecture
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein homolog).

SIX5_HUMAN
NC score	0.365077 (rank : 45)	θ value	0.00035302 (rank : 44)
Query Neighborhood Hits	197	Target Neighborhood Hits	386	Shared Neighborhood Hits	102
SwissProt Accessions	Q8N196	Gene names	SIX5, DMAHP
Domain Architecture	No domain graphic available
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein).

SIX4_HUMAN
NC score	0.358621 (rank : 46)	θ value	0.0113563 (rank : 47)
Query Neighborhood Hits	197	Target Neighborhood Hits	342	Shared Neighborhood Hits	94
SwissProt Accessions	Q9UIU6	Gene names	SIX4
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4).

SIX4_MOUSE
NC score	0.357424 (rank : 47)	θ value	0.0113563 (rank : 48)
Query Neighborhood Hits	197	Target Neighborhood Hits	341	Shared Neighborhood Hits	94
SwissProt Accessions	Q61321, Q61322, Q61323	Gene names	Six4, Arec3
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4) (Skeletal muscle-specific ARE-binding protein AREC3).

ONEC2_HUMAN
NC score	0.168549 (rank : 48)	θ value	0.365318 (rank : 63)
Query Neighborhood Hits	197	Target Neighborhood Hits	115	Shared Neighborhood Hits	42
SwissProt Accessions	O95948	Gene names	ONECUT2
Domain Architecture
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

ONEC2_MOUSE
NC score	0.166474 (rank : 49)	θ value	0.365318 (rank : 64)
Query Neighborhood Hits	197	Target Neighborhood Hits	123	Shared Neighborhood Hits	43
SwissProt Accessions	Q6XBJ3	Gene names	Onecut2, Oc2
Domain Architecture	No domain graphic available
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

HNF6_HUMAN
NC score	0.145649 (rank : 50)	θ value	8.99809 (rank : 187)
Query Neighborhood Hits	197	Target Neighborhood Hits	127	Shared Neighborhood Hits	47
SwissProt Accessions	Q9UBC0, Q99744, Q9UMR6	Gene names	ONECUT1, HNF6, HNF6A
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

HNF6_MOUSE
NC score	0.140920 (rank : 51)	θ value	8.99809 (rank : 188)
Query Neighborhood Hits	197	Target Neighborhood Hits	124	Shared Neighborhood Hits	47
SwissProt Accessions	O08755	Gene names	Onecut1, Hnf6, Hnf6a
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

CUTL2_MOUSE
NC score	0.131439 (rank : 52)	θ value	0.279714 (rank : 60)
Query Neighborhood Hits	197	Target Neighborhood Hits	771	Shared Neighborhood Hits	73
SwissProt Accessions	P70298	Gene names	Cutl2
Domain Architecture
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

CUTL2_HUMAN
NC score	0.124743 (rank : 53)	θ value	1.06291 (rank : 76)
Query Neighborhood Hits	197	Target Neighborhood Hits	906	Shared Neighborhood Hits	87
SwissProt Accessions	O14529	Gene names	CUTL2, KIAA0293
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

ZHX3_MOUSE
NC score	0.119345 (rank : 54)	θ value	6.88961 (rank : 178)
Query Neighborhood Hits	197	Target Neighborhood Hits	321	Shared Neighborhood Hits	72
SwissProt Accessions	Q8C0Q2, Q80U14	Gene names	Zhx3, Kiaa0395, Tix1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

PITX3_HUMAN
NC score	0.099012 (rank : 55)	θ value	θ > 10 (rank : 287)
Query Neighborhood Hits	197	Target Neighborhood Hits	366	Shared Neighborhood Hits	94
SwissProt Accessions	O75364	Gene names	PITX3, PTX3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

PITX3_MOUSE
NC score	0.098457 (rank : 56)	θ value	θ > 10 (rank : 288)
Query Neighborhood Hits	197	Target Neighborhood Hits	380	Shared Neighborhood Hits	97
SwissProt Accessions	O35160	Gene names	Pitx3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

LBX1_HUMAN
NC score	0.098095 (rank : 57)	θ value	2.36792 (rank : 104)
Query Neighborhood Hits	197	Target Neighborhood Hits	357	Shared Neighborhood Hits	90
SwissProt Accessions	P52954	Gene names	LBX1
Domain Architecture
Description	Transcription factor LBX1.

LBX1_MOUSE
NC score	0.095638 (rank : 58)	θ value	6.88961 (rank : 165)
Query Neighborhood Hits	197	Target Neighborhood Hits	349	Shared Neighborhood Hits	88
SwissProt Accessions	P52955	Gene names	Lbx1, Lbx1h
Domain Architecture
Description	Transcription factor LBX1.

ZHX3_HUMAN
NC score	0.094016 (rank : 59)	θ value	6.88961 (rank : 177)
Query Neighborhood Hits	197	Target Neighborhood Hits	331	Shared Neighborhood Hits	67
SwissProt Accessions	Q9H4I2, O43145	Gene names	ZHX3, KIAA0395, TIX1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

LHX9_HUMAN
NC score	0.089437 (rank : 60)	θ value	2.36792 (rank : 107)
Query Neighborhood Hits	197	Target Neighborhood Hits	444	Shared Neighborhood Hits	84
SwissProt Accessions	Q9NQ69, Q5VUE3, Q9BYU6, Q9NQ70	Gene names	LHX9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

DLX6_HUMAN
NC score	0.087318 (rank : 61)	θ value	0.21417 (rank : 55)
Query Neighborhood Hits	197	Target Neighborhood Hits	341	Shared Neighborhood Hits	91
SwissProt Accessions	P56179, Q3ZAR6, Q9UPL2	Gene names	DLX6
Domain Architecture
Description	Homeobox protein DLX-6.

LHX9_MOUSE
NC score	0.086109 (rank : 62)	θ value	2.36792 (rank : 108)
Query Neighborhood Hits	197	Target Neighborhood Hits	445	Shared Neighborhood Hits	84
SwissProt Accessions	Q9WUH2, Q9QYQ5, Q9QYQ6, Q9QZ00, Q9WU44	Gene names	Lhx9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

HLX1_HUMAN
NC score	0.086049 (rank : 63)	θ value	2.36792 (rank : 99)
Query Neighborhood Hits	197	Target Neighborhood Hits	370	Shared Neighborhood Hits	82
SwissProt Accessions	Q14774, Q15988	Gene names	HLX1
Domain Architecture
Description	Homeobox protein HLX1 (Homeobox protein HB24).

LHX2_MOUSE
NC score	0.086002 (rank : 64)	θ value	2.36792 (rank : 106)
Query Neighborhood Hits	197	Target Neighborhood Hits	431	Shared Neighborhood Hits	85
SwissProt Accessions	Q9Z0S2	Gene names	Lhx2
Domain Architecture
Description	LIM/homeobox protein Lhx2.

LHX2_HUMAN
NC score	0.083854 (rank : 65)	θ value	2.36792 (rank : 105)
Query Neighborhood Hits	197	Target Neighborhood Hits	432	Shared Neighborhood Hits	86
SwissProt Accessions	P50458, O95860, Q8N1Z3	Gene names	LHX2, LH2
Domain Architecture
Description	LIM/homeobox protein Lhx2 (Homeobox protein LH-2).

HXB13_HUMAN
NC score	0.083852 (rank : 66)	θ value	2.36792 (rank : 101)
Query Neighborhood Hits	197	Target Neighborhood Hits	377	Shared Neighborhood Hits	89
SwissProt Accessions	Q92826, Q96QM4, Q99810	Gene names	HOXB13
Domain Architecture
Description	Homeobox protein Hox-B13.

PITX2_HUMAN
NC score	0.083433 (rank : 67)	θ value	θ > 10 (rank : 285)
Query Neighborhood Hits	197	Target Neighborhood Hits	381	Shared Neighborhood Hits	95
SwissProt Accessions	Q99697, O60578, O60579, O60580, Q9BY17	Gene names	PITX2, ARP1, RGS, RIEG, RIEG1
Domain Architecture
Description	Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription factor) (Solurshin) (ALL1-responsive protein ARP1).

PITX2_MOUSE
NC score	0.083019 (rank : 68)	θ value	θ > 10 (rank : 286)
Query Neighborhood Hits	197	Target Neighborhood Hits	383	Shared Neighborhood Hits	93
SwissProt Accessions	P97474, O08646, O70336, P97933, Q9JLA0, Q9QXB8, Q9R1V9, Q9Z141	Gene names	Pitx2, Arp1, Brx1, Otlx2, Ptx2, Rgs
Domain Architecture
Description	Pituitary homeobox 2 (Orthodenticle-like homeobox 2) (Solurshin) (ALL1-responsive protein ARP1) (BRX1 homeoprotein) (Paired-like homeodomain transcription factor Munc 30).

BSH_MOUSE
NC score	0.081632 (rank : 69)	θ value	θ > 10 (rank : 202)
Query Neighborhood Hits	197	Target Neighborhood Hits	349	Shared Neighborhood Hits	88
SwissProt Accessions	Q810B3	Gene names	Bsx
Domain Architecture	No domain graphic available
Description	Brain-specific homeobox protein homolog.

HXD10_MOUSE
NC score	0.081231 (rank : 70)	θ value	1.38821 (rank : 84)
Query Neighborhood Hits	197	Target Neighborhood Hits	392	Shared Neighborhood Hits	86
SwissProt Accessions	P28359, Q91WU9	Gene names	Hoxd10, Hox-4.5, Hoxd-10
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4.5) (Hox-5.3).

HLX1_MOUSE
NC score	0.081116 (rank : 71)	θ value	2.36792 (rank : 100)
Query Neighborhood Hits	197	Target Neighborhood Hits	362	Shared Neighborhood Hits	81
SwissProt Accessions	Q61670	Gene names	Hlx1, Hlx
Domain Architecture
Description	Homeobox protein HLX1.

HXD10_HUMAN
NC score	0.080803 (rank : 72)	θ value	1.38821 (rank : 83)
Query Neighborhood Hits	197	Target Neighborhood Hits	392	Shared Neighborhood Hits	86
SwissProt Accessions	P28358	Gene names	HOXD10, HOX4D
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4D) (Hox-4E).

HXA13_MOUSE
NC score	0.079442 (rank : 73)	θ value	1.38821 (rank : 82)
Query Neighborhood Hits	197	Target Neighborhood Hits	351	Shared Neighborhood Hits	88
SwissProt Accessions	Q62424	Gene names	Hoxa13, Hox-1.10
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1.10).

HXA13_HUMAN
NC score	0.079026 (rank : 74)	θ value	1.38821 (rank : 81)
Query Neighborhood Hits	197	Target Neighborhood Hits	353	Shared Neighborhood Hits	88
SwissProt Accessions	P31271, O43371	Gene names	HOXA13, HOX1J
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1J).

HXB13_MOUSE
NC score	0.078547 (rank : 75)	θ value	4.03905 (rank : 132)
Query Neighborhood Hits	197	Target Neighborhood Hits	384	Shared Neighborhood Hits	86
SwissProt Accessions	P70321, Q80Y12	Gene names	Hoxb13
Domain Architecture
Description	Homeobox protein Hox-B13.

ZHX1_HUMAN
NC score	0.077750 (rank : 76)	θ value	θ > 10 (rank : 299)
Query Neighborhood Hits	197	Target Neighborhood Hits	307	Shared Neighborhood Hits	75
SwissProt Accessions	Q9UKY1, Q8IWD8	Gene names	ZHX1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

HXC10_MOUSE
NC score	0.077723 (rank : 77)	θ value	2.36792 (rank : 103)
Query Neighborhood Hits	197	Target Neighborhood Hits	417	Shared Neighborhood Hits	85
SwissProt Accessions	P31257, P31312, Q7TMT7	Gene names	Hoxc10, Hox-3.6, Hoxc-10
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C10 (Hox-3.6).

NKX28_MOUSE
NC score	0.077331 (rank : 78)	θ value	θ > 10 (rank : 274)
Query Neighborhood Hits	197	Target Neighborhood Hits	347	Shared Neighborhood Hits	89
SwissProt Accessions	O70584	Gene names	Nkx2-8, Nkx-2.9, Nkx2-9, Nkx2h
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H) (Homeobox protein Nkx-2.9).

HXC10_HUMAN
NC score	0.076739 (rank : 79)	θ value	2.36792 (rank : 102)
Query Neighborhood Hits	197	Target Neighborhood Hits	417	Shared Neighborhood Hits	86
SwissProt Accessions	Q9NYD6, O15219, O15220, Q9BVD5	Gene names	HOXC10
Domain Architecture
Description	Homeobox protein Hox-C10.

EMX2_MOUSE
NC score	0.076738 (rank : 80)	θ value	4.03905 (rank : 129)
Query Neighborhood Hits	197	Target Neighborhood Hits	340	Shared Neighborhood Hits	86
SwissProt Accessions	Q04744, Q80UE7	Gene names	Emx2, Emx-2
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

EMX2_HUMAN
NC score	0.076390 (rank : 81)	θ value	4.03905 (rank : 128)
Query Neighborhood Hits	197	Target Neighborhood Hits	341	Shared Neighborhood Hits	85
SwissProt Accessions	Q04743, Q96NN8, Q9BQF4	Gene names	EMX2
Domain Architecture
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

HXC8_MOUSE
NC score	0.075942 (rank : 82)	θ value	θ > 10 (rank : 254)
Query Neighborhood Hits	197	Target Neighborhood Hits	327	Shared Neighborhood Hits	78
SwissProt Accessions	P09025	Gene names	Hoxc8, Hox-3.1, Hoxc-8
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3.1) (M31).

HXC8_HUMAN
NC score	0.075933 (rank : 83)	θ value	θ > 10 (rank : 253)
Query Neighborhood Hits	197	Target Neighborhood Hits	327	Shared Neighborhood Hits	78
SwissProt Accessions	P31273, O15221, O15362	Gene names	HOXC8, HOX3A
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3A).

HXA9_MOUSE
NC score	0.075254 (rank : 84)	θ value	1.06291 (rank : 78)
Query Neighborhood Hits	197	Target Neighborhood Hits	334	Shared Neighborhood Hits	82
SwissProt Accessions	P09631, O70154, O70155	Gene names	Hoxa9, Hox-1.7, Hoxa-9
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1.7).

HXA9_HUMAN
NC score	0.075239 (rank : 85)	θ value	1.06291 (rank : 77)
Query Neighborhood Hits	197	Target Neighborhood Hits	332	Shared Neighborhood Hits	82
SwissProt Accessions	P31269, O43369, O43429, Q99820	Gene names	HOXA9, HOX1G
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1G).

NKX28_HUMAN
NC score	0.075217 (rank : 86)	θ value	5.27518 (rank : 151)
Query Neighborhood Hits	197	Target Neighborhood Hits	352	Shared Neighborhood Hits	90
SwissProt Accessions	O15522	Gene names	NKX2-8, NKX-2.8, NKX2G, NKX2H
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H).

DLX4_MOUSE
NC score	0.075183 (rank : 87)	θ value	2.36792 (rank : 97)
Query Neighborhood Hits	197	Target Neighborhood Hits	352	Shared Neighborhood Hits	85
SwissProt Accessions	P70436, Q3UM51, Q8R4I3	Gene names	Dlx4, Dlx7
Domain Architecture
Description	Homeobox protein DLX-4 (DLX-7).

ZHX1_MOUSE
NC score	0.075055 (rank : 88)	θ value	θ > 10 (rank : 300)
Query Neighborhood Hits	197	Target Neighborhood Hits	334	Shared Neighborhood Hits	72
SwissProt Accessions	P70121, Q8BQ68, Q8C6T4, Q8CJG3	Gene names	Zhx1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

HXD13_MOUSE
NC score	0.074499 (rank : 89)	θ value	3.0926 (rank : 121)
Query Neighborhood Hits	197	Target Neighborhood Hits	324	Shared Neighborhood Hits	80
SwissProt Accessions	P70217, Q2VPB0, Q2VPB1, Q64177	Gene names	Hoxd13, Hox-4.8
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4.8).

HXD13_HUMAN
NC score	0.074403 (rank : 90)	θ value	3.0926 (rank : 120)
Query Neighborhood Hits	197	Target Neighborhood Hits	332	Shared Neighborhood Hits	80
SwissProt Accessions	P35453	Gene names	HOXD13, HOX4I
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4I).

PO6F2_MOUSE
NC score	0.072972 (rank : 91)	θ value	0.813845 (rank : 74)
Query Neighborhood Hits	197	Target Neighborhood Hits	639	Shared Neighborhood Hits	90
SwissProt Accessions	Q8BJI4	Gene names	Pou6f2
Domain Architecture	No domain graphic available
Description	POU domain, class 6, transcription factor 2.

PITX1_MOUSE
NC score	0.072217 (rank : 92)	θ value	θ > 10 (rank : 284)
Query Neighborhood Hits	197	Target Neighborhood Hits	362	Shared Neighborhood Hits	90
SwissProt Accessions	P70314, O54742, P70427	Gene names	Pitx1, Bft, Potx, Ptx1
Domain Architecture
Description	Pituitary homeobox 1 (Homeobox protein P-OTX) (Pituitary OTX-related factor) (Hindlimb expressed homeobox protein backfoot) (Ptx1).

DLX1_MOUSE
NC score	0.071120 (rank : 93)	θ value	θ > 10 (rank : 208)
Query Neighborhood Hits	197	Target Neighborhood Hits	343	Shared Neighborhood Hits	88
SwissProt Accessions	Q64317	Gene names	Dlx1
Domain Architecture
Description	Homeobox protein DLX-1.

DLX1_HUMAN
NC score	0.071104 (rank : 94)	θ value	θ > 10 (rank : 207)
Query Neighborhood Hits	197	Target Neighborhood Hits	343	Shared Neighborhood Hits	88
SwissProt Accessions	P56177, Q53ZU4, Q8IYB2	Gene names	DLX1
Domain Architecture
Description	Homeobox protein DLX-1.

DUX1_HUMAN
NC score	0.071082 (rank : 95)	θ value	θ > 10 (rank : 215)
Query Neighborhood Hits	197	Target Neighborhood Hits	330	Shared Neighborhood Hits	77
SwissProt Accessions	O43812	Gene names	DUX1
Domain Architecture	No domain graphic available
Description	Double homeobox protein 1.

HXB8_HUMAN
NC score	0.070879 (rank : 96)	θ value	θ > 10 (rank : 250)
Query Neighborhood Hits	197	Target Neighborhood Hits	324	Shared Neighborhood Hits	73
SwissProt Accessions	P17481, Q9H1I2	Gene names	HOXB8, HOX2D
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4).

DUX5_HUMAN
NC score	0.070695 (rank : 97)	θ value	θ > 10 (rank : 218)
Query Neighborhood Hits	197	Target Neighborhood Hits	330	Shared Neighborhood Hits	77
SwissProt Accessions	Q96PT3	Gene names	DUX5
Domain Architecture	No domain graphic available
Description	Double homeobox protein 5.

HXB8_MOUSE
NC score	0.070555 (rank : 98)	θ value	θ > 10 (rank : 251)
Query Neighborhood Hits	197	Target Neighborhood Hits	325	Shared Neighborhood Hits	74
SwissProt Accessions	P09632	Gene names	Hoxb8, Hox-2.4, Hoxb-8
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2.4).

BARX2_HUMAN
NC score	0.070379 (rank : 99)	θ value	θ > 10 (rank : 200)
Query Neighborhood Hits	197	Target Neighborhood Hits	387	Shared Neighborhood Hits	80
SwissProt Accessions	Q9UMQ3, O43518	Gene names	BARX2
Domain Architecture
Description	Homeobox protein BarH-like 2.

HXD8_MOUSE
NC score	0.069987 (rank : 100)	θ value	θ > 10 (rank : 261)
Query Neighborhood Hits	197	Target Neighborhood Hits	333	Shared Neighborhood Hits	76
SwissProt Accessions	P23463	Gene names	Hoxd8, Hox-4.3, Hoxd-8
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4).

PO6F2_HUMAN
NC score	0.069911 (rank : 101)	θ value	6.88961 (rank : 168)
Query Neighborhood Hits	197	Target Neighborhood Hits	618	Shared Neighborhood Hits	88
SwissProt Accessions	P78424, P78425, Q75ME8, Q86UM6, Q9UDS7	Gene names	POU6F2, RPF1
Domain Architecture
Description	POU domain, class 6, transcription factor 2 (Retina-derived POU-domain factor 1) (RPF-1).

PO6F1_MOUSE
NC score	0.069880 (rank : 102)	θ value	4.03905 (rank : 138)
Query Neighborhood Hits	197	Target Neighborhood Hits	581	Shared Neighborhood Hits	102
SwissProt Accessions	Q07916, Q91XK3	Gene names	Pou6f1, Emb
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (Octamer-binding transcription factor EMB) (Transcription regulatory protein MCP-1).

PRRXL_MOUSE
NC score	0.069681 (rank : 103)	θ value	8.99809 (rank : 194)
Query Neighborhood Hits	197	Target Neighborhood Hits	350	Shared Neighborhood Hits	88
SwissProt Accessions	Q8BYH0, Q8K3F8	Gene names	Prrxl1, Drg11
Domain Architecture	No domain graphic available
Description	Paired-related homeobox protein-like 1 (Dorsal root ganglion 11) (Homeobox protein DRG11).

DLX4_HUMAN
NC score	0.069674 (rank : 104)	θ value	5.27518 (rank : 143)
Query Neighborhood Hits	197	Target Neighborhood Hits	350	Shared Neighborhood Hits	85
SwissProt Accessions	Q92988, O60480, Q13265, Q6PJK0, Q9HBE0	Gene names	DLX4, BP1, DLX7, DLX8
Domain Architecture	No domain graphic available
Description	Homeobox protein DLX-4 (DLX-7) (DLX-8) (Beta protein 1).

HXC9_HUMAN
NC score	0.069623 (rank : 105)	θ value	5.27518 (rank : 146)
Query Neighborhood Hits	197	Target Neighborhood Hits	339	Shared Neighborhood Hits	79
SwissProt Accessions	P31274, Q9H1I0	Gene names	HOXC9, HOX3B
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3B).

HXC9_MOUSE
NC score	0.069604 (rank : 106)	θ value	5.27518 (rank : 147)
Query Neighborhood Hits	197	Target Neighborhood Hits	338	Shared Neighborhood Hits	79
SwissProt Accessions	P09633	Gene names	Hoxc9, Hox-3.2, Hoxc-9
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3.2).

HXD8_HUMAN
NC score	0.069304 (rank : 107)	θ value	θ > 10 (rank : 260)
Query Neighborhood Hits	197	Target Neighborhood Hits	338	Shared Neighborhood Hits	77
SwissProt Accessions	P13378	Gene names	HOXD8, HOX4E
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4).

CUTL1_MOUSE
NC score	0.069095 (rank : 108)	θ value	1.81305 (rank : 90)
Query Neighborhood Hits	197	Target Neighborhood Hits	1620	Shared Neighborhood Hits	92
SwissProt Accessions	P53564, O08994, P70301, Q571L6, Q91ZD2	Gene names	Cutl1, Cux, Cux1, Kiaa4047
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP) (Homeobox protein Cux).

DLX5_MOUSE
NC score	0.069079 (rank : 109)	θ value	θ > 10 (rank : 214)
Query Neighborhood Hits	197	Target Neighborhood Hits	434	Shared Neighborhood Hits	94
SwissProt Accessions	P70396, O54876, O54877, O54878, Q9JJ45	Gene names	Dlx5
Domain Architecture
Description	Homeobox protein DLX-5.

DLX3_HUMAN
NC score	0.068691 (rank : 110)	θ value	θ > 10 (rank : 211)
Query Neighborhood Hits	197	Target Neighborhood Hits	369	Shared Neighborhood Hits	87
SwissProt Accessions	O60479	Gene names	DLX3
Domain Architecture
Description	Homeobox protein DLX-3.

ALX3_HUMAN
NC score	0.068524 (rank : 111)	θ value	8.99809 (rank : 180)
Query Neighborhood Hits	197	Target Neighborhood Hits	380	Shared Neighborhood Hits	87
SwissProt Accessions	O95076, O95075	Gene names	ALX3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

DUX4_HUMAN
NC score	0.067945 (rank : 112)	θ value	θ > 10 (rank : 217)
Query Neighborhood Hits	197	Target Neighborhood Hits	403	Shared Neighborhood Hits	82
SwissProt Accessions	Q9UBX2	Gene names	DUX4, DUX10
Domain Architecture	No domain graphic available
Description	Double homeobox protein 4 (Double homeobox protein 10) (Double homeobox protein 4/10).

ALX3_MOUSE
NC score	0.067882 (rank : 113)	θ value	θ > 10 (rank : 198)
Query Neighborhood Hits	197	Target Neighborhood Hits	386	Shared Neighborhood Hits	85
SwissProt Accessions	O70137	Gene names	Alx3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

ZHX2_MOUSE
NC score	0.067438 (rank : 114)	θ value	θ > 10 (rank : 302)
Query Neighborhood Hits	197	Target Neighborhood Hits	435	Shared Neighborhood Hits	71
SwissProt Accessions	Q8C0C0	Gene names	Zhx2, Afr1, Raf
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

PAX7_HUMAN
NC score	0.066762 (rank : 115)	θ value	θ > 10 (rank : 280)
Query Neighborhood Hits	197	Target Neighborhood Hits	456	Shared Neighborhood Hits	103
SwissProt Accessions	P23759	Gene names	PAX7, HUP1
Domain Architecture
Description	Paired box protein Pax-7 (HUP1).

ALX4_MOUSE
NC score	0.066563 (rank : 116)	θ value	8.99809 (rank : 181)
Query Neighborhood Hits	197	Target Neighborhood Hits	369	Shared Neighborhood Hits	89
SwissProt Accessions	O35137	Gene names	Alx4
Domain Architecture
Description	Homeobox protein aristaless-like 4 (ALX-4).

PAX3_HUMAN
NC score	0.066278 (rank : 117)	θ value	θ > 10 (rank : 278)
Query Neighborhood Hits	197	Target Neighborhood Hits	513	Shared Neighborhood Hits	100
SwissProt Accessions	P23760, Q16448	Gene names	PAX3, HUP2
Domain Architecture
Description	Paired box protein Pax-3 (HUP2).

BARX2_MOUSE
NC score	0.066204 (rank : 118)	θ value	θ > 10 (rank : 201)
Query Neighborhood Hits	197	Target Neighborhood Hits	335	Shared Neighborhood Hits	79
SwissProt Accessions	O08686	Gene names	Barx2
Domain Architecture
Description	Homeobox protein BarH-like 2.

PROP1_HUMAN
NC score	0.066193 (rank : 119)	θ value	θ > 10 (rank : 289)
Query Neighborhood Hits	197	Target Neighborhood Hits	354	Shared Neighborhood Hits	86
SwissProt Accessions	O75360	Gene names	PROP1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

HME2_HUMAN
NC score	0.065912 (rank : 120)	θ value	θ > 10 (rank : 230)
Query Neighborhood Hits	197	Target Neighborhood Hits	355	Shared Neighborhood Hits	86
SwissProt Accessions	P19622	Gene names	EN2
Domain Architecture
Description	Homeobox protein engrailed-2 (Hu-En-2).

HME2_MOUSE
NC score	0.065727 (rank : 121)	θ value	θ > 10 (rank : 231)
Query Neighborhood Hits	197	Target Neighborhood Hits	352	Shared Neighborhood Hits	86
SwissProt Accessions	P09066	Gene names	En2, En-2
Domain Architecture
Description	Homeobox protein engrailed-2 (Mo-En-2).

PAX7_MOUSE
NC score	0.065579 (rank : 122)	θ value	θ > 10 (rank : 281)
Query Neighborhood Hits	197	Target Neighborhood Hits	422	Shared Neighborhood Hits	99
SwissProt Accessions	P47239, Q9ES16	Gene names	Pax7, Pax-7
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-7.

PROP1_MOUSE
NC score	0.065526 (rank : 123)	θ value	θ > 10 (rank : 290)
Query Neighborhood Hits	197	Target Neighborhood Hits	361	Shared Neighborhood Hits	84
SwissProt Accessions	P97458	Gene names	Prop1, Prop-1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

NKX61_MOUSE
NC score	0.065369 (rank : 124)	θ value	θ > 10 (rank : 276)
Query Neighborhood Hits	197	Target Neighborhood Hits	439	Shared Neighborhood Hits	84
SwissProt Accessions	Q99MA9, Q9ERQ7	Gene names	Nkx6-1, Nkx6.1, Nkx6a
Domain Architecture
Description	Homeobox protein Nkx-6.1.

PO6F1_HUMAN
NC score	0.065348 (rank : 125)	θ value	4.03905 (rank : 137)
Query Neighborhood Hits	197	Target Neighborhood Hits	370	Shared Neighborhood Hits	74
SwissProt Accessions	Q14863	Gene names	POU6F1, BRN5, MPOU, TCFB1
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (mPOU homeobox protein) (Brain-specific homeobox/POU domain protein 5) (Brain-5) (Brn-5 protein).

DUX3_HUMAN
NC score	0.065258 (rank : 126)	θ value	θ > 10 (rank : 216)
Query Neighborhood Hits	197	Target Neighborhood Hits	312	Shared Neighborhood Hits	77
SwissProt Accessions	Q96PT4, Q9UND2	Gene names	DUX3
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 3.

DLX3_MOUSE
NC score	0.065133 (rank : 127)	θ value	θ > 10 (rank : 212)
Query Neighborhood Hits	197	Target Neighborhood Hits	367	Shared Neighborhood Hits	87
SwissProt Accessions	Q64205	Gene names	Dlx3
Domain Architecture
Description	Homeobox protein DLX-3.

ZHX2_HUMAN
NC score	0.064976 (rank : 128)	θ value	θ > 10 (rank : 301)
Query Neighborhood Hits	197	Target Neighborhood Hits	347	Shared Neighborhood Hits	58
SwissProt Accessions	Q9Y6X8	Gene names	ZHX2, AFR1, KIAA0854, RAF
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

HXC13_MOUSE
NC score	0.064938 (rank : 129)	θ value	6.88961 (rank : 161)
Query Neighborhood Hits	197	Target Neighborhood Hits	337	Shared Neighborhood Hits	81
SwissProt Accessions	P50207, Q53Z78, Q920I7	Gene names	Hoxc13, Hoxc-13
Domain Architecture
Description	Homeobox protein Hox-C13.

HXC13_HUMAN
NC score	0.064933 (rank : 130)	θ value	6.88961 (rank : 160)
Query Neighborhood Hits	197	Target Neighborhood Hits	336	Shared Neighborhood Hits	81
SwissProt Accessions	P31276, Q96J32, Q9NR24, Q9NYD5	Gene names	HOXC13, HOX3G
Domain Architecture
Description	Homeobox protein Hox-C13 (Hox-3G).

HXD9_HUMAN
NC score	0.064933 (rank : 131)	θ value	6.88961 (rank : 162)
Query Neighborhood Hits	197	Target Neighborhood Hits	352	Shared Neighborhood Hits	80
SwissProt Accessions	P28356	Gene names	HOXD9, HOX4C
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2).

HXD9_MOUSE
NC score	0.064819 (rank : 132)	θ value	6.88961 (rank : 163)
Query Neighborhood Hits	197	Target Neighborhood Hits	359	Shared Neighborhood Hits	79
SwissProt Accessions	P28357, Q3UYS2	Gene names	Hoxd9, Hox-4.4, Hoxd-9
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4.4) (Hox-5.2).

DLX5_HUMAN
NC score	0.064749 (rank : 133)	θ value	θ > 10 (rank : 213)
Query Neighborhood Hits	197	Target Neighborhood Hits	405	Shared Neighborhood Hits	92
SwissProt Accessions	P56178, Q9UPL1	Gene names	DLX5
Domain Architecture
Description	Homeobox protein DLX-5.

HXB9_MOUSE
NC score	0.064430 (rank : 134)	θ value	4.03905 (rank : 134)
Query Neighborhood Hits	197	Target Neighborhood Hits	344	Shared Neighborhood Hits	78
SwissProt Accessions	P20615	Gene names	Hoxb9, Hox-2.5, Hoxb-9
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2.5).

PITX1_HUMAN
NC score	0.064199 (rank : 135)	θ value	θ > 10 (rank : 283)
Query Neighborhood Hits	197	Target Neighborhood Hits	353	Shared Neighborhood Hits	83
SwissProt Accessions	P78337, O14677, O60425, Q9BTI5	Gene names	PITX1, BFT, PTX1
Domain Architecture
Description	Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot).

PAX3_MOUSE
NC score	0.063650 (rank : 136)	θ value	θ > 10 (rank : 279)
Query Neighborhood Hits	197	Target Neighborhood Hits	478	Shared Neighborhood Hits	95
SwissProt Accessions	P24610, Q3UFQ9, Q8BRE7, Q9CXI6	Gene names	Pax3, Pax-3
Domain Architecture
Description	Paired box protein Pax-3.

HXB9_HUMAN
NC score	0.063383 (rank : 137)	θ value	4.03905 (rank : 133)
Query Neighborhood Hits	197	Target Neighborhood Hits	344	Shared Neighborhood Hits	76
SwissProt Accessions	P17482, Q9H1I1	Gene names	HOXB9, HOX2E
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5).

ATBF1_MOUSE
NC score	0.063171 (rank : 138)	θ value	0.0252991 (rank : 50)
Query Neighborhood Hits	197	Target Neighborhood Hits	1841	Shared Neighborhood Hits	121
SwissProt Accessions	Q61329	Gene names	Atbf1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

EMX1_HUMAN
NC score	0.063157 (rank : 139)	θ value	3.0926 (rank : 118)
Query Neighborhood Hits	197	Target Neighborhood Hits	336	Shared Neighborhood Hits	85
SwissProt Accessions	Q04741, Q86XB0	Gene names	EMX1
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty spiracles- like protein 1).

ATBF1_HUMAN
NC score	0.062912 (rank : 140)	θ value	0.0252991 (rank : 49)
Query Neighborhood Hits	197	Target Neighborhood Hits	1547	Shared Neighborhood Hits	112
SwissProt Accessions	Q15911, O15101, Q13719	Gene names	ATBF1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

HXD11_HUMAN
NC score	0.062636 (rank : 141)	θ value	θ > 10 (rank : 255)
Query Neighborhood Hits	197	Target Neighborhood Hits	353	Shared Neighborhood Hits	80
SwissProt Accessions	P31277, Q9NS02	Gene names	HOXD11, HOX4F
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4F).

HXA1_MOUSE
NC score	0.062581 (rank : 142)	θ value	θ > 10 (rank : 238)
Query Neighborhood Hits	197	Target Neighborhood Hits	341	Shared Neighborhood Hits	80
SwissProt Accessions	P09022, P15463	Gene names	Hoxa1, Era-1, Hox-1.6, Hoxa-1
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399).

ALX4_HUMAN
NC score	0.062570 (rank : 143)	θ value	θ > 10 (rank : 199)
Query Neighborhood Hits	197	Target Neighborhood Hits	394	Shared Neighborhood Hits	86
SwissProt Accessions	Q9H161, Q96JN7, Q9H198, Q9HAY9	Gene names	ALX4, KIAA1788
Domain Architecture
Description	Homeobox protein aristaless-like 4.

NKX61_HUMAN
NC score	0.062489 (rank : 144)	θ value	θ > 10 (rank : 275)
Query Neighborhood Hits	197	Target Neighborhood Hits	431	Shared Neighborhood Hits	84
SwissProt Accessions	P78426	Gene names	NKX6-1, NKX6A
Domain Architecture
Description	Homeobox protein Nkx-6.1.

CUTL1_HUMAN
NC score	0.062478 (rank : 145)	θ value	3.0926 (rank : 117)
Query Neighborhood Hits	197	Target Neighborhood Hits	1574	Shared Neighborhood Hits	87
SwissProt Accessions	P39880, Q6NYH4, Q9UEV5	Gene names	CUTL1
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP).

OTP_MOUSE
NC score	0.062390 (rank : 146)	θ value	θ > 10 (rank : 277)
Query Neighborhood Hits	197	Target Neighborhood Hits	387	Shared Neighborhood Hits	87
SwissProt Accessions	O09113	Gene names	Otp
Domain Architecture
Description	Homeobox protein orthopedia.

HXA10_HUMAN
NC score	0.062193 (rank : 147)	θ value	θ > 10 (rank : 233)
Query Neighborhood Hits	197	Target Neighborhood Hits	334	Shared Neighborhood Hits	79
SwissProt Accessions	P31260, O43370, O43605, Q15949	Gene names	HOXA10, HOX1H
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL).

HXA7_MOUSE
NC score	0.061925 (rank : 148)	θ value	θ > 10 (rank : 243)
Query Neighborhood Hits	197	Target Neighborhood Hits	318	Shared Neighborhood Hits	73
SwissProt Accessions	P02830, Q544P0	Gene names	Hoxa7, Hox-1.1, Hoxa-7
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1.1) (M6-12) (M6).

HXA1_HUMAN
NC score	0.061697 (rank : 149)	θ value	θ > 10 (rank : 237)
Query Neighborhood Hits	197	Target Neighborhood Hits	334	Shared Neighborhood Hits	78
SwissProt Accessions	P49639, O43363	Gene names	HOXA1, HOX1F
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1F).

ISL2_MOUSE
NC score	0.061355 (rank : 150)	θ value	θ > 10 (rank : 262)
Query Neighborhood Hits	197	Target Neighborhood Hits	426	Shared Neighborhood Hits	77
SwissProt Accessions	Q9CXV0	Gene names	Isl2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

HXA10_MOUSE
NC score	0.061206 (rank : 151)	θ value	θ > 10 (rank : 234)
Query Neighborhood Hits	197	Target Neighborhood Hits	365	Shared Neighborhood Hits	81
SwissProt Accessions	P31310, Q80Y22	Gene names	Hoxa10, Hox-1.8, Hoxa-10
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1.8).

GSC_HUMAN
NC score	0.061135 (rank : 152)	θ value	θ > 10 (rank : 219)
Query Neighborhood Hits	197	Target Neighborhood Hits	369	Shared Neighborhood Hits	87
SwissProt Accessions	P56915, Q86YR1	Gene names	GSC
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid.

HXD11_MOUSE
NC score	0.060999 (rank : 153)	θ value	θ > 10 (rank : 256)
Query Neighborhood Hits	197	Target Neighborhood Hits	376	Shared Neighborhood Hits	82
SwissProt Accessions	P23813	Gene names	Hoxd11, Hox-4.6, Hoxd-11
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5).

HXB7_MOUSE
NC score	0.060393 (rank : 154)	θ value	θ > 10 (rank : 249)
Query Neighborhood Hits	197	Target Neighborhood Hits	314	Shared Neighborhood Hits	72
SwissProt Accessions	P09024, Q3UW15	Gene names	Hoxb7, Hox-2.3, Hoxb-7
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2.3) (MUB1) (Homeobox protein MH-22B).

GSC_MOUSE
NC score	0.060266 (rank : 155)	θ value	θ > 10 (rank : 220)
Query Neighborhood Hits	197	Target Neighborhood Hits	368	Shared Neighborhood Hits	85
SwissProt Accessions	Q02591	Gene names	Gsc
Domain Architecture
Description	Homeobox protein goosecoid.

HXC11_HUMAN
NC score	0.059883 (rank : 156)	θ value	θ > 10 (rank : 252)
Query Neighborhood Hits	197	Target Neighborhood Hits	349	Shared Neighborhood Hits	77
SwissProt Accessions	O43248, Q96DH2	Gene names	HOXC11
Domain Architecture
Description	Homeobox protein Hox-C11.

LHX5_HUMAN
NC score	0.059600 (rank : 157)	θ value	θ > 10 (rank : 268)
Query Neighborhood Hits	197	Target Neighborhood Hits	453	Shared Neighborhood Hits	79
SwissProt Accessions	Q9H2C1	Gene names	LHX5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

LHX5_MOUSE
NC score	0.059145 (rank : 158)	θ value	θ > 10 (rank : 269)
Query Neighborhood Hits	197	Target Neighborhood Hits	456	Shared Neighborhood Hits	79
SwissProt Accessions	P61375, P50459	Gene names	Lhx5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

HXB7_HUMAN
NC score	0.058725 (rank : 159)	θ value	θ > 10 (rank : 248)
Query Neighborhood Hits	197	Target Neighborhood Hits	311	Shared Neighborhood Hits	72
SwissProt Accessions	P09629, Q15957	Gene names	HOXB7, HOX2C
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2C) (HHO.C1).

HME1_HUMAN
NC score	0.058177 (rank : 160)	θ value	θ > 10 (rank : 228)
Query Neighborhood Hits	197	Target Neighborhood Hits	384	Shared Neighborhood Hits	81
SwissProt Accessions	Q05925	Gene names	EN1
Domain Architecture
Description	Homeobox protein engrailed-1 (Hu-En-1).

HME1_MOUSE
NC score	0.057953 (rank : 161)	θ value	θ > 10 (rank : 229)
Query Neighborhood Hits	197	Target Neighborhood Hits	397	Shared Neighborhood Hits	82
SwissProt Accessions	P09065	Gene names	En1, En-1
Domain Architecture
Description	Homeobox protein engrailed-1 (Mo-En-1).

HXA6_HUMAN
NC score	0.057812 (rank : 162)	θ value	θ > 10 (rank : 240)
Query Neighborhood Hits	197	Target Neighborhood Hits	309	Shared Neighborhood Hits	74
SwissProt Accessions	P31267, Q9UPM0	Gene names	HOXA6, HOX1B
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A6 (Hox-1B).

DLX2_MOUSE
NC score	0.057642 (rank : 163)	θ value	θ > 10 (rank : 210)
Query Neighborhood Hits	197	Target Neighborhood Hits	352	Shared Neighborhood Hits	84
SwissProt Accessions	P40764	Gene names	Dlx2, Tes-1, Tes1
Domain Architecture
Description	Homeobox protein DLX-2 (Homeobox protein TES-1).

DLX2_HUMAN
NC score	0.057427 (rank : 164)	θ value	θ > 10 (rank : 209)
Query Neighborhood Hits	197	Target Neighborhood Hits	355	Shared Neighborhood Hits	84
SwissProt Accessions	Q07687	Gene names	DLX2
Domain Architecture
Description	Homeobox protein DLX-2.

HXB1_HUMAN
NC score	0.056633 (rank : 165)	θ value	θ > 10 (rank : 244)
Query Neighborhood Hits	197	Target Neighborhood Hits	356	Shared Neighborhood Hits	80
SwissProt Accessions	P14653	Gene names	HOXB1, HOX2I
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2I).

HXB1_MOUSE
NC score	0.056527 (rank : 166)	θ value	θ > 10 (rank : 245)
Query Neighborhood Hits	197	Target Neighborhood Hits	341	Shared Neighborhood Hits	80
SwissProt Accessions	P17919, Q3ZAY6, Q9CYH3	Gene names	Hoxb1, Hox-2.9, Hoxb-1
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2.9).

LHX1_MOUSE
NC score	0.056102 (rank : 167)	θ value	θ > 10 (rank : 264)
Query Neighborhood Hits	197	Target Neighborhood Hits	453	Shared Neighborhood Hits	79
SwissProt Accessions	P63006, P36199	Gene names	Lhx1, Lim-1, Lim1
Domain Architecture	No domain graphic available
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

HXD1_MOUSE
NC score	0.055884 (rank : 168)	θ value	θ > 10 (rank : 258)
Query Neighborhood Hits	197	Target Neighborhood Hits	381	Shared Neighborhood Hits	79
SwissProt Accessions	Q01822	Gene names	Hoxd1, Hox-4.9, Hoxd-1
Domain Architecture
Description	Homeobox protein Hox-D1 (Hox-4.9).

HXA6_MOUSE
NC score	0.055666 (rank : 169)	θ value	θ > 10 (rank : 241)
Query Neighborhood Hits	197	Target Neighborhood Hits	304	Shared Neighborhood Hits	72
SwissProt Accessions	P09092, Q9JI98	Gene names	Hoxa6, Hox-1.2, Hoxa-6
Domain Architecture
Description	Homeobox protein Hox-A6 (Hox-1.2) (M5-4).

HMBX1_HUMAN
NC score	0.055652 (rank : 170)	θ value	θ > 10 (rank : 227)
Query Neighborhood Hits	197	Target Neighborhood Hits	118	Shared Neighborhood Hits	29
SwissProt Accessions	Q6NT76, Q3Y6P1, Q96GS5, Q9H701	Gene names	HMBOX1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

NKX25_HUMAN
NC score	0.055350 (rank : 171)	θ value	θ > 10 (rank : 273)
Query Neighborhood Hits	197	Target Neighborhood Hits	338	Shared Neighborhood Hits	83
SwissProt Accessions	P52952	Gene names	NKX2-5, CSX, NKX2.5, NKX2E
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

PEPP1_HUMAN
NC score	0.055074 (rank : 172)	θ value	θ > 10 (rank : 282)
Query Neighborhood Hits	197	Target Neighborhood Hits	338	Shared Neighborhood Hits	73
SwissProt Accessions	Q8NHV9, O95030, Q3SYE0	Gene names	PEPP1, OTEX
Domain Architecture
Description	Paired-like homeobox protein PEPP-1 (Ovary-, testis- and epididymis- expressed gene protein).

LHX1_HUMAN
NC score	0.055044 (rank : 173)	θ value	θ > 10 (rank : 263)
Query Neighborhood Hits	197	Target Neighborhood Hits	453	Shared Neighborhood Hits	80
SwissProt Accessions	P48742, Q3MIW0	Gene names	LHX1, LIM1
Domain Architecture
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

HXA7_HUMAN
NC score	0.054965 (rank : 174)	θ value	θ > 10 (rank : 242)
Query Neighborhood Hits	197	Target Neighborhood Hits	309	Shared Neighborhood Hits	71
SwissProt Accessions	P31268, O43368, O43486, O95655, Q9NSC8, Q9UDM1	Gene names	HOXA7, HOX1A
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1).

CDX4_MOUSE
NC score	0.054739 (rank : 175)	θ value	θ > 10 (rank : 205)
Query Neighborhood Hits	197	Target Neighborhood Hits	378	Shared Neighborhood Hits	79
SwissProt Accessions	Q07424	Gene names	Cdx4, Cdx-4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

DBX1_MOUSE
NC score	0.054713 (rank : 176)	θ value	θ > 10 (rank : 206)
Query Neighborhood Hits	197	Target Neighborhood Hits	346	Shared Neighborhood Hits	74
SwissProt Accessions	P52950	Gene names	Dbx1, Dbx
Domain Architecture
Description	Homeobox protein DBX1.

HXA3_MOUSE
NC score	0.054420 (rank : 177)	θ value	0.62314 (rank : 69)
Query Neighborhood Hits	197	Target Neighborhood Hits	558	Shared Neighborhood Hits	90
SwissProt Accessions	P02831, Q4V9Z8, Q61197	Gene names	Hoxa3, Hox-1.5, Hoxa-3
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1.5) (MO-10).

TITF1_HUMAN
NC score	0.053789 (rank : 178)	θ value	θ > 10 (rank : 296)
Query Neighborhood Hits	197	Target Neighborhood Hits	332	Shared Neighborhood Hits	75
SwissProt Accessions	P43699, O14954, O14955, Q9BRJ8	Gene names	TITF1, NKX2-1, NKX2A, TTF1
Domain Architecture
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1) (Homeobox protein NK-2 homolog A).

SHOX_HUMAN
NC score	0.053709 (rank : 179)	θ value	θ > 10 (rank : 295)
Query Neighborhood Hits	197	Target Neighborhood Hits	363	Shared Neighborhood Hits	76
SwissProt Accessions	O15266, O00412, O00413, O15267	Gene names	SHOX, PHOG
Domain Architecture
Description	Short stature homeobox protein (Short stature homeobox-containing protein) (Pseudoautosomal homeobox-containing osteogenic protein).

CDX1_MOUSE
NC score	0.053567 (rank : 180)	θ value	θ > 10 (rank : 203)
Query Neighborhood Hits	197	Target Neighborhood Hits	379	Shared Neighborhood Hits	73
SwissProt Accessions	P18111, Q8VCF7	Gene names	Cdx1, Cdx-1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

HXB6_HUMAN
NC score	0.053424 (rank : 181)	θ value	θ > 10 (rank : 246)
Query Neighborhood Hits	197	Target Neighborhood Hits	307	Shared Neighborhood Hits	72
SwissProt Accessions	P17509, P09068, Q9HB11, Q9UGH2	Gene names	HOXB6, HOX2B
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2).

HXD1_HUMAN
NC score	0.053381 (rank : 182)	θ value	θ > 10 (rank : 257)
Query Neighborhood Hits	197	Target Neighborhood Hits	337	Shared Neighborhood Hits	78
SwissProt Accessions	Q9GZZ0	Gene names	HOXD1
Domain Architecture
Description	Homeobox protein Hox-D1.

HXB6_MOUSE
NC score	0.053343 (rank : 183)	θ value	θ > 10 (rank : 247)
Query Neighborhood Hits	197	Target Neighborhood Hits	309	Shared Neighborhood Hits	72
SwissProt Accessions	P09023	Gene names	Hoxb6, Hox-2.2, Hoxb-6
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2.2) (Homeobox protein MH-22A).

HLXB9_HUMAN
NC score	0.052767 (rank : 184)	θ value	θ > 10 (rank : 225)
Query Neighborhood Hits	197	Target Neighborhood Hits	336	Shared Neighborhood Hits	79
SwissProt Accessions	P50219, Q9Y648	Gene names	HLXB9
Domain Architecture
Description	Homeobox protein HB9.

GSH2_MOUSE
NC score	0.052707 (rank : 185)	θ value	θ > 10 (rank : 222)
Query Neighborhood Hits	197	Target Neighborhood Hits	319	Shared Neighborhood Hits	76
SwissProt Accessions	P31316	Gene names	Gsh2, Gsh-2
Domain Architecture
Description	Homeobox protein GSH-2.

PRRX1_HUMAN
NC score	0.052669 (rank : 186)	θ value	θ > 10 (rank : 291)
Query Neighborhood Hits	197	Target Neighborhood Hits	347	Shared Neighborhood Hits	83
SwissProt Accessions	P54821, O60807	Gene names	PRRX1, PMX1
Domain Architecture
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein PHOX1).

TITF1_MOUSE
NC score	0.052668 (rank : 187)	θ value	θ > 10 (rank : 297)
Query Neighborhood Hits	197	Target Neighborhood Hits	335	Shared Neighborhood Hits	75
SwissProt Accessions	P50220	Gene names	Titf1, Nkx-2.1, Nkx2-1, Ttf1
Domain Architecture	No domain graphic available
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1).

NKX22_MOUSE
NC score	0.052150 (rank : 188)	θ value	θ > 10 (rank : 271)
Query Neighborhood Hits	197	Target Neighborhood Hits	336	Shared Neighborhood Hits	82
SwissProt Accessions	P42586	Gene names	Nkx2-2, Nkx-2.2, Nkx2b
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

CDX4_HUMAN
NC score	0.051952 (rank : 189)	θ value	θ > 10 (rank : 204)
Query Neighborhood Hits	197	Target Neighborhood Hits	366	Shared Neighborhood Hits	82
SwissProt Accessions	O14627, Q5JS20	Gene names	CDX4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

LHX4_MOUSE
NC score	0.051842 (rank : 190)	θ value	θ > 10 (rank : 267)
Query Neighborhood Hits	197	Target Neighborhood Hits	457	Shared Neighborhood Hits	90
SwissProt Accessions	P53776, O08916, Q9R280	Gene names	Lhx4, Gsh-4, Gsh4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

LHX4_HUMAN
NC score	0.051801 (rank : 191)	θ value	θ > 10 (rank : 266)
Query Neighborhood Hits	197	Target Neighborhood Hits	455	Shared Neighborhood Hits	90
SwissProt Accessions	Q969G2, Q8NHE0, Q8TCJ1, Q8WWX2, Q969W2	Gene names	LHX4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

GSH2_HUMAN
NC score	0.051599 (rank : 192)	θ value	θ > 10 (rank : 221)
Query Neighborhood Hits	197	Target Neighborhood Hits	324	Shared Neighborhood Hits	77
SwissProt Accessions	Q9BZM3	Gene names	GSH2
Domain Architecture
Description	Homeobox protein GSH-2.

HHEX_HUMAN
NC score	0.051463 (rank : 193)	θ value	θ > 10 (rank : 224)
Query Neighborhood Hits	197	Target Neighborhood Hits	358	Shared Neighborhood Hits	71
SwissProt Accessions	Q03014	Gene names	HHEX, HEX, PRH, PRHX
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

HESX1_MOUSE
NC score	0.051380 (rank : 194)	θ value	θ > 10 (rank : 223)
Query Neighborhood Hits	197	Target Neighborhood Hits	331	Shared Neighborhood Hits	72
SwissProt Accessions	Q61658, Q61047	Gene names	Hesx1, Hes-1, Rpx
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (Anterior- restricted homeobox protein) (Rathke pouch homeo box).

HXA11_MOUSE
NC score	0.051347 (rank : 195)	θ value	θ > 10 (rank : 236)
Query Neighborhood Hits	197	Target Neighborhood Hits	327	Shared Neighborhood Hits	64
SwissProt Accessions	P31311, Q3V026	Gene names	Hoxa11, Hox-1.9, Hoxa-11
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1.9).

NKX12_MOUSE
NC score	0.051237 (rank : 196)	θ value	θ > 10 (rank : 270)
Query Neighborhood Hits	197	Target Neighborhood Hits	332	Shared Neighborhood Hits	70
SwissProt Accessions	P42580, Q9JHF2, Q9JKW5, Q9JKW6, Q9JKW9, Q9JKX0, Q9JKX1	Gene names	Nkx1-2, Nkx1.1, Sax1
Domain Architecture
Description	NK1 transcription factor-related protein 2 (Homeobox protein SAX-1) (NKX-1.1).

HXA3_HUMAN
NC score	0.051095 (rank : 197)	θ value	θ > 10 (rank : 239)
Query Neighborhood Hits	197	Target Neighborhood Hits	535	Shared Neighborhood Hits	90
SwissProt Accessions	O43365	Gene names	HOXA3, HOX1E
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1E).

ZFHX2_HUMAN
NC score	0.051079 (rank : 198)	θ value	θ > 10 (rank : 298)
Query Neighborhood Hits	197	Target Neighborhood Hits	1178	Shared Neighborhood Hits	103
SwissProt Accessions	Q9C0A1	Gene names	ZFHX2, KIAA1762
Domain Architecture
Description	Zinc finger homeobox protein 2.

HXA11_HUMAN
NC score	0.050969 (rank : 199)	θ value	θ > 10 (rank : 235)
Query Neighborhood Hits	197	Target Neighborhood Hits	334	Shared Neighborhood Hits	65
SwissProt Accessions	P31270	Gene names	HOXA11, HOX1I
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1I).

LHX3_HUMAN
NC score	0.050889 (rank : 200)	θ value	θ > 10 (rank : 265)
Query Neighborhood Hits	197	Target Neighborhood Hits	474	Shared Neighborhood Hits	95
SwissProt Accessions	Q9UBR4, Q9NZB5, Q9P0I8, Q9P0I9	Gene names	LHX3
Domain Architecture
Description	LIM/homeobox protein Lhx3.

HMX2_MOUSE
NC score	0.050543 (rank : 201)	θ value	θ > 10 (rank : 232)
Query Neighborhood Hits	197	Target Neighborhood Hits	354	Shared Neighborhood Hits	80
SwissProt Accessions	P43687, Q8R1Q2	Gene names	Hmx2, Nkx-5.2, Nkx5-2
Domain Architecture
Description	Homeobox protein HMX2 (Homeobox protein Nkx-5.2).

NKX24_HUMAN
NC score	0.050483 (rank : 202)	θ value	θ > 10 (rank : 272)
Query Neighborhood Hits	197	Target Neighborhood Hits	366	Shared Neighborhood Hits	78
SwissProt Accessions	Q9H2Z4	Gene names	NKX2-4, NKX2D
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

PRRX2_MOUSE
NC score	0.050350 (rank : 203)	θ value	θ > 10 (rank : 294)
Query Neighborhood Hits	197	Target Neighborhood Hits	351	Shared Neighborhood Hits	81
SwissProt Accessions	Q06348, Q61651	Gene names	Prrx2, Prx2, S8
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Homeobox protein S8).

HLXB9_MOUSE
NC score	0.050336 (rank : 204)	θ value	θ > 10 (rank : 226)
Query Neighborhood Hits	197	Target Neighborhood Hits	354	Shared Neighborhood Hits	82
SwissProt Accessions	Q9QZW9	Gene names	Hlxb9
Domain Architecture
Description	Homeobox protein HB9.

PRRX1_MOUSE
NC score	0.050330 (rank : 205)	θ value	θ > 10 (rank : 292)
Query Neighborhood Hits	197	Target Neighborhood Hits	346	Shared Neighborhood Hits	81
SwissProt Accessions	P63013, P43271, Q02810	Gene names	Prrx1, Pmx, Pmx1
Domain Architecture	No domain graphic available
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein mHox) (Homeobox protein K-2).

PRRX2_HUMAN
NC score	0.050059 (rank : 206)	θ value	θ > 10 (rank : 293)
Query Neighborhood Hits	197	Target Neighborhood Hits	348	Shared Neighborhood Hits	82
SwissProt Accessions	Q99811, Q9UIB3	Gene names	PRRX2, PMX2, PRX2
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Paired-related homeobox protein 2).

HXD3_MOUSE
NC score	0.050029 (rank : 207)	θ value	θ > 10 (rank : 259)
Query Neighborhood Hits	197	Target Neighborhood Hits	435	Shared Neighborhood Hits	86
SwissProt Accessions	P09027, Q3UUD3	Gene names	Hoxd3, Hox-4.1, Hoxd-3
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4.1) (Homeobox protein MH-19).

NKX32_MOUSE
NC score	0.049918 (rank : 208)	θ value	2.36792 (rank : 111)
Query Neighborhood Hits	197	Target Neighborhood Hits	326	Shared Neighborhood Hits	74
SwissProt Accessions	P97503	Gene names	Bapx1, Nkx-3.2, Nkx3-2, Nkx3b
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

NKX32_HUMAN
NC score	0.049612 (rank : 209)	θ value	2.36792 (rank : 110)
Query Neighborhood Hits	197	Target Neighborhood Hits	323	Shared Neighborhood Hits	74
SwissProt Accessions	P78367	Gene names	BAPX1, NKX3B
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

ATOH1_HUMAN
NC score	0.044720 (rank : 210)	θ value	0.0252991 (rank : 51)
Query Neighborhood Hits	197	Target Neighborhood Hits	97	Shared Neighborhood Hits	3
SwissProt Accessions	Q92858	Gene names	ATOH1, ATH1
Domain Architecture
Description	Atonal protein homolog 1 (Helix-loop-helix protein hATH-1).

CEP35_HUMAN
NC score	0.044078 (rank : 211)	θ value	0.00869519 (rank : 46)
Query Neighborhood Hits	197	Target Neighborhood Hits	811	Shared Neighborhood Hits	20
SwissProt Accessions	Q5VT06, O75068, Q8TDK3, Q8WY20	Gene names	CEP350, CAP350, GM133
Domain Architecture	No domain graphic available
Description	Centrosome-associated protein 350 (Centrosome-associated protein of 350 kDa).

BASP_MOUSE
NC score	0.042921 (rank : 212)	θ value	0.0736092 (rank : 53)
Query Neighborhood Hits	197	Target Neighborhood Hits	260	Shared Neighborhood Hits	9
SwissProt Accessions	Q91XV3	Gene names	Basp1, Nap22
Domain Architecture	No domain graphic available
Description	Brain acid soluble protein 1 (BASP1 protein) (Neuronal axonal membrane protein NAP-22) (22 kDa neuronal tissue-enriched acidic protein).

SFR15_HUMAN
NC score	0.039608 (rank : 213)	θ value	0.279714 (rank : 61)
Query Neighborhood Hits	197	Target Neighborhood Hits	368	Shared Neighborhood Hits	22
SwissProt Accessions	O95104, Q6P1M5, Q8N3I8, Q9UFM1, Q9ULP8	Gene names	SFRS15, KIAA1172
Domain Architecture	No domain graphic available
Description	Splicing factor, arginine/serine-rich 15 (CTD-binding SR-like protein RA4).

MINT_MOUSE
NC score	0.038981 (rank : 214)	θ value	0.0736092 (rank : 54)
Query Neighborhood Hits	197	Target Neighborhood Hits	1514	Shared Neighborhood Hits	77
SwissProt Accessions	Q62504, Q80TN9, Q99PS4, Q9QZW2	Gene names	Spen, Kiaa0929, Mint, Sharp
Domain Architecture
Description	Msx2-interacting protein (SPEN homolog) (SMART/HDAC1-associated repressor protein).

BRD8_MOUSE
NC score	0.038142 (rank : 215)	θ value	0.0563607 (rank : 52)
Query Neighborhood Hits	197	Target Neighborhood Hits	422	Shared Neighborhood Hits	32
SwissProt Accessions	Q8R3B7, Q8C049, Q8R583, Q8VDP0	Gene names	Brd8
Domain Architecture	No domain graphic available
Description	Bromodomain-containing protein 8.

PCQAP_HUMAN
NC score	0.037240 (rank : 216)	θ value	0.21417 (rank : 56)
Query Neighborhood Hits	197	Target Neighborhood Hits	549	Shared Neighborhood Hits	25
SwissProt Accessions	Q96RN5, O15413, Q6IC31, Q8NF16, Q96CT0, Q96IH7, Q9P1T3	Gene names	PCQAP, ARC105, CTG7A, TIG1
Domain Architecture	No domain graphic available
Description	Positive cofactor 2 glutamine/Q-rich-associated protein (PC2 glutamine/Q-rich-associated protein) (TPA-inducible gene 1 protein) (TIG-1) (Activator-recruited cofactor 105 kDa component) (ARC105) (CTG repeat protein 7a).

WASF1_MOUSE
NC score	0.036636 (rank : 217)	θ value	0.21417 (rank : 59)
Query Neighborhood Hits	197	Target Neighborhood Hits	261	Shared Neighborhood Hits	19
SwissProt Accessions	Q8R5H6, Q91W51, Q9ERQ9	Gene names	Wasf1, Wave1
Domain Architecture	No domain graphic available
Description	Wiskott-Aldrich syndrome protein family member 1 (WASP-family protein member 1) (Protein WAVE-1).

CBP_HUMAN
NC score	0.036441 (rank : 218)	θ value	0.813845 (rank : 72)
Query Neighborhood Hits	197	Target Neighborhood Hits	941	Shared Neighborhood Hits	63
SwissProt Accessions	Q92793, O00147, Q16376	Gene names	CREBBP, CBP
Domain Architecture
Description	CREB-binding protein (EC 2.3.1.48).

WASF1_HUMAN
NC score	0.036299 (rank : 219)	θ value	0.21417 (rank : 58)
Query Neighborhood Hits	197	Target Neighborhood Hits	260	Shared Neighborhood Hits	18
SwissProt Accessions	Q92558	Gene names	WASF1, KIAA0269, SCAR1, WAVE1
Domain Architecture	No domain graphic available
Description	Wiskott-Aldrich syndrome protein family member 1 (WASP-family protein member 1) (Protein WAVE-1) (Verprolin homology domain-containing protein 1).

PCQAP_MOUSE
NC score	0.035446 (rank : 220)	θ value	0.365318 (rank : 65)
Query Neighborhood Hits	197	Target Neighborhood Hits	506	Shared Neighborhood Hits	22
SwissProt Accessions	Q924H2	Gene names	Pcqap
Domain Architecture	No domain graphic available
Description	Positive cofactor 2 glutamine/Q-rich-associated protein (PC2 glutamine/Q-rich-associated protein) (mPcqap).

WASIP_MOUSE
NC score	0.034066 (rank : 221)	θ value	0.47712 (rank : 67)
Query Neighborhood Hits	197	Target Neighborhood Hits	392	Shared Neighborhood Hits	25
SwissProt Accessions	Q8K1I7, Q3U0U8	Gene names	Waspip, Wip
Domain Architecture	No domain graphic available
Description	Wiskott-Aldrich syndrome protein-interacting protein (WASP-interacting protein).

CBP_MOUSE
NC score	0.032818 (rank : 222)	θ value	3.0926 (rank : 116)
Query Neighborhood Hits	197	Target Neighborhood Hits	1051	Shared Neighborhood Hits	72
SwissProt Accessions	P45481	Gene names	Crebbp, Cbp
Domain Architecture
Description	CREB-binding protein (EC 2.3.1.48).

MAML2_HUMAN
NC score	0.029045 (rank : 223)	θ value	2.36792 (rank : 109)
Query Neighborhood Hits	197	Target Neighborhood Hits	360	Shared Neighborhood Hits	22
SwissProt Accessions	Q8IZL2, Q6AI23, Q6Y3A3, Q8IUL3, Q96JK6	Gene names	MAML2, KIAA1819
Domain Architecture	No domain graphic available
Description	Mastermind-like protein 2 (Mam-2).

SRF_HUMAN
NC score	0.029028 (rank : 224)	θ value	1.81305 (rank : 94)
Query Neighborhood Hits	197	Target Neighborhood Hits	43	Shared Neighborhood Hits	6
SwissProt Accessions	P11831	Gene names	SRF
Domain Architecture
Description	Serum response factor (SRF).

PRR12_HUMAN
NC score	0.025783 (rank : 225)	θ value	1.38821 (rank : 86)
Query Neighborhood Hits	197	Target Neighborhood Hits	460	Shared Neighborhood Hits	24
SwissProt Accessions	Q9ULL5, Q8N4J6	Gene names	PRR12, KIAA1205
Domain Architecture	No domain graphic available
Description	Proline-rich protein 12.

MLL3_HUMAN
NC score	0.025606 (rank : 226)	θ value	3.0926 (rank : 122)
Query Neighborhood Hits	197	Target Neighborhood Hits	1644	Shared Neighborhood Hits	74
SwissProt Accessions	Q8NEZ4, Q8NC02, Q8NDF6, Q9H9P4, Q9NR13, Q9P222, Q9UDR7	Gene names	MLL3, HALR, KIAA1506
Domain Architecture
Description	Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog (EC 2.1.1.43) (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (Homologous to ALR protein).

CJ047_HUMAN
NC score	0.025494 (rank : 227)	θ value	0.813845 (rank : 73)
Query Neighborhood Hits	197	Target Neighborhood Hits	164	Shared Neighborhood Hits	6
SwissProt Accessions	Q86WR7, Q5W0J9, Q5W0K0, Q5W0K1, Q5W0K2, Q6PJC8, Q8N317	Gene names	C10orf47
Domain Architecture	No domain graphic available
Description	Protein C10orf47.

HNF1A_MOUSE
NC score	0.025202 (rank : 228)	θ value	4.03905 (rank : 131)
Query Neighborhood Hits	197	Target Neighborhood Hits	212	Shared Neighborhood Hits	25
SwissProt Accessions	P22361	Gene names	Tcf1, Hnf-1, Hnf-1a, Hnf1a
Domain Architecture
Description	Hepatocyte nuclear factor 1-alpha (HNF-1A) (Liver-specific transcription factor LF-B1) (LFB1).

PCLO_MOUSE
NC score	0.023096 (rank : 229)	θ value	2.36792 (rank : 112)
Query Neighborhood Hits	197	Target Neighborhood Hits	2275	Shared Neighborhood Hits	87
SwissProt Accessions	Q9QYX7, Q8CF91, Q8CF92, Q9QYX6, Q9QZJ0	Gene names	Pclo, Acz
Domain Architecture
Description	Protein piccolo (Aczonin) (Multidomain presynaptic cytomatrix protein) (Brain-derived HLMN protein).

FA61A_MOUSE
NC score	0.022789 (rank : 230)	θ value	3.0926 (rank : 119)
Query Neighborhood Hits	197	Target Neighborhood Hits	81	Shared Neighborhood Hits	11
SwissProt Accessions	Q8K2F8, Q9CTG8	Gene names	Fam61a
Domain Architecture	No domain graphic available
Description	Protein FAM61A.

WASIP_HUMAN
NC score	0.022675 (rank : 231)	θ value	8.99809 (rank : 196)
Query Neighborhood Hits	197	Target Neighborhood Hits	458	Shared Neighborhood Hits	27
SwissProt Accessions	O43516, Q15220, Q6MZU9, Q9BU37, Q9UNP1	Gene names	WASPIP, WIP
Domain Architecture	No domain graphic available
Description	Wiskott-Aldrich syndrome protein-interacting protein (WASP-interacting protein) (PRPL-2 protein).

WASF3_MOUSE
NC score	0.022628 (rank : 232)	θ value	6.88961 (rank : 175)
Query Neighborhood Hits	197	Target Neighborhood Hits	188	Shared Neighborhood Hits	15
SwissProt Accessions	Q8VHI6	Gene names	Wasf3, Wave3
Domain Architecture	No domain graphic available
Description	Wiskott-Aldrich syndrome protein family member 3 (WASP-family protein member 3) (Protein WAVE-3).

ARI1A_HUMAN
NC score	0.022573 (rank : 233)	θ value	2.36792 (rank : 96)
Query Neighborhood Hits	197	Target Neighborhood Hits	787	Shared Neighborhood Hits	44
SwissProt Accessions	O14497, Q53FK9, Q5T0W1, Q5T0W2, Q5T0W3, Q8NFD6, Q96T89, Q9BY33, Q9HBJ5, Q9UPZ1	Gene names	ARID1A, C1orf4, OSA1, SMARCF1
Domain Architecture
Description	AT-rich interactive domain-containing protein 1A (ARID domain- containing protein 1A) (SWI/SNF-related, matrix-associated, actin- dependent regulator of chromatin subfamily F member 1) (SWI-SNF complex protein p270) (B120) (SWI-like protein) (Osa homolog 1) (hOSA1) (hELD) (BRG1-associated factor 250) (BAF250) (BRG1-associated factor 250a) (BAF250A).

SC24C_HUMAN
NC score	0.021899 (rank : 234)	θ value	6.88961 (rank : 171)
Query Neighborhood Hits	197	Target Neighborhood Hits	662	Shared Neighborhood Hits	59
SwissProt Accessions	P53992, Q8WV25	Gene names	SEC24C, KIAA0079
Domain Architecture
Description	Protein transport protein Sec24C (SEC24-related protein C).

MUC2_HUMAN
NC score	0.021899 (rank : 235)	θ value	0.62314 (rank : 70)
Query Neighborhood Hits	197	Target Neighborhood Hits	906	Shared Neighborhood Hits	38
SwissProt Accessions	Q02817, Q14878	Gene names	MUC2, SMUC
Domain Architecture
Description	Mucin-2 precursor (Intestinal mucin-2).

PDC6I_MOUSE
NC score	0.021833 (rank : 236)	θ value	0.47712 (rank : 66)
Query Neighborhood Hits	197	Target Neighborhood Hits	275	Shared Neighborhood Hits	14
SwissProt Accessions	Q9WU78, O88695, O89014, Q8BSL8, Q8R0H5, Q99LR3, Q9QZN8	Gene names	Pdcd6ip, Aip1, Alix
Domain Architecture
Description	Programmed cell death 6-interacting protein (ALG-2-interacting protein X) (ALG-2-interacting protein 1) (E2F1-inducible protein) (Eig2).

CSTF2_HUMAN
NC score	0.020883 (rank : 237)	θ value	0.365318 (rank : 62)
Query Neighborhood Hits	197	Target Neighborhood Hits	296	Shared Neighborhood Hits	10
SwissProt Accessions	P33240, Q5H951, Q6LA74, Q8N502	Gene names	CSTF2
Domain Architecture
Description	Cleavage stimulation factor 64 kDa subunit (CSTF 64 kDa subunit) (CF-1 64 kDa subunit) (CstF-64).

NFIC_MOUSE
NC score	0.020712 (rank : 238)	θ value	0.62314 (rank : 71)
Query Neighborhood Hits	197	Target Neighborhood Hits	66	Shared Neighborhood Hits	8
SwissProt Accessions	P70255, O09072, P70256, Q3U2I9, Q99MA3, Q99MA4, Q99MA5, Q99MA6, Q99MA7, Q99MA8, Q9R1G3	Gene names	Nfic
Domain Architecture
Description	Nuclear factor 1 C-type (Nuclear factor 1/C) (NF1-C) (NFI-C) (NF-I/C) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein).

NUMBL_HUMAN
NC score	0.020474 (rank : 239)	θ value	5.27518 (rank : 152)
Query Neighborhood Hits	197	Target Neighborhood Hits	394	Shared Neighborhood Hits	45
SwissProt Accessions	Q9Y6R0, Q7Z4J9	Gene names	NUMBL
Domain Architecture
Description	Numb-like protein (Numb-R).

IF35_MOUSE
NC score	0.020449 (rank : 240)	θ value	1.81305 (rank : 91)
Query Neighborhood Hits	197	Target Neighborhood Hits	210	Shared Neighborhood Hits	20
SwissProt Accessions	Q9DCH4	Gene names	Eif3s5
Domain Architecture
Description	Eukaryotic translation initiation factor 3 subunit 5 (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f).

BAG3_MOUSE
NC score	0.020213 (rank : 241)	θ value	4.03905 (rank : 127)
Query Neighborhood Hits	197	Target Neighborhood Hits	513	Shared Neighborhood Hits	41
SwissProt Accessions	Q9JLV1, Q9JJC7	Gene names	Bag3, Bis
Domain Architecture
Description	BAG family molecular chaperone regulator 3 (BCL-2-binding athanogene- 3) (BAG-3) (Bcl-2-binding protein Bis).

PCLO_HUMAN
NC score	0.020067 (rank : 242)	θ value	5.27518 (rank : 153)
Query Neighborhood Hits	197	Target Neighborhood Hits	2046	Shared Neighborhood Hits	82
SwissProt Accessions	Q9Y6V0, O43373, O60305, Q9BVC8, Q9UIV2, Q9Y6U9	Gene names	PCLO, ACZ, KIAA0559
Domain Architecture
Description	Protein piccolo (Aczonin).

MUC7_HUMAN
NC score	0.020058 (rank : 243)	θ value	3.0926 (rank : 123)
Query Neighborhood Hits	197	Target Neighborhood Hits	538	Shared Neighborhood Hits	28
SwissProt Accessions	Q8TAX7	Gene names	MUC7, MG2
Domain Architecture	No domain graphic available
Description	Mucin-7 precursor (MUC-7) (Salivary mucin-7) (Apo-MG2).

ACINU_HUMAN
NC score	0.019829 (rank : 244)	θ value	8.99809 (rank : 179)
Query Neighborhood Hits	197	Target Neighborhood Hits	828	Shared Neighborhood Hits	25
SwissProt Accessions	Q9UKV3, O75158, Q9UG91, Q9UKV1, Q9UKV2	Gene names	ACIN1, ACINUS, KIAA0670
Domain Architecture
Description	Apoptotic chromatin condensation inducer in the nucleus (Acinus).

SOX9_HUMAN
NC score	0.019494 (rank : 245)	θ value	0.21417 (rank : 57)
Query Neighborhood Hits	197	Target Neighborhood Hits	210	Shared Neighborhood Hits	10
SwissProt Accessions	P48436	Gene names	SOX9
Domain Architecture
Description	Transcription factor SOX-9.

ZC3H5_MOUSE
NC score	0.019426 (rank : 246)	θ value	1.38821 (rank : 88)
Query Neighborhood Hits	197	Target Neighborhood Hits	136	Shared Neighborhood Hits	4
SwissProt Accessions	Q8BL48, Q8BVI6, Q99JZ8, Q99LL9	Gene names	Zc3h5, Kiaa1753, Zc3hdc5
Domain Architecture	No domain graphic available
Description	Zinc finger CCCH domain-containing protein 5.

SFR14_HUMAN
NC score	0.019379 (rank : 247)	θ value	1.06291 (rank : 79)
Query Neighborhood Hits	197	Target Neighborhood Hits	97	Shared Neighborhood Hits	5
SwissProt Accessions	Q8IX01, O15071, O60369, Q5JPH7, Q8WUF7	Gene names	SFRS14, KIAA0365
Domain Architecture	No domain graphic available
Description	Putative splicing factor, arginine/serine-rich 14 (Arginine/serine- rich-splicing factor 14).

HNF1A_HUMAN
NC score	0.018906 (rank : 248)	θ value	6.88961 (rank : 159)
Query Neighborhood Hits	197	Target Neighborhood Hits	193	Shared Neighborhood Hits	19
SwissProt Accessions	P20823, Q99861	Gene names	TCF1, HNF1A
Domain Architecture
Description	Hepatocyte nuclear factor 1-alpha (HNF-1A) (Liver-specific transcription factor LF-B1) (LFB1) (Transcription factor 1) (TCF-1).

TFG_HUMAN
NC score	0.018364 (rank : 249)	θ value	6.88961 (rank : 173)
Query Neighborhood Hits	197	Target Neighborhood Hits	122	Shared Neighborhood Hits	10
SwissProt Accessions	Q92734, Q15656	Gene names	TFG
Domain Architecture
Description	Protein TFG (TRK-fused gene protein).

MN1_HUMAN
NC score	0.018279 (rank : 250)	θ value	6.88961 (rank : 167)
Query Neighborhood Hits	197	Target Neighborhood Hits	196	Shared Neighborhood Hits	12
SwissProt Accessions	Q10571	Gene names	MN1
Domain Architecture	No domain graphic available
Description	Probable tumor suppressor protein MN1.

G3PT_MOUSE
NC score	0.017472 (rank : 251)	θ value	1.38821 (rank : 80)
Query Neighborhood Hits	197	Target Neighborhood Hits	78	Shared Neighborhood Hits	7
SwissProt Accessions	Q64467, Q60650	Gene names	Gapdhs, Gapd-s, Gapds
Domain Architecture
Description	Glyceraldehyde-3-phosphate dehydrogenase, testis-specific (EC 1.2.1.12) (Spermatogenic cell-specific glyceraldehyde 3-phosphate dehydrogenase 2) (GAPDH-2).

BRD4_MOUSE
NC score	0.017197 (rank : 252)	θ value	6.88961 (rank : 156)
Query Neighborhood Hits	197	Target Neighborhood Hits	845	Shared Neighborhood Hits	28
SwissProt Accessions	Q9ESU6, Q8VHF7, Q8VHF8	Gene names	Brd4, Mcap
Domain Architecture	No domain graphic available
Description	Bromodomain-containing protein 4 (Mitotic chromosome-associated protein) (MCAP).

BRD4_HUMAN
NC score	0.016511 (rank : 253)	θ value	5.27518 (rank : 141)
Query Neighborhood Hits	197	Target Neighborhood Hits	851	Shared Neighborhood Hits	34
SwissProt Accessions	O60885, O60433, Q96PD3	Gene names	BRD4, HUNK1
Domain Architecture
Description	Bromodomain-containing protein 4 (HUNK1 protein).

SOX9_MOUSE
NC score	0.016340 (rank : 254)	θ value	3.0926 (rank : 124)
Query Neighborhood Hits	197	Target Neighborhood Hits	188	Shared Neighborhood Hits	12
SwissProt Accessions	Q04887, Q8C7L2, Q91ZK2, Q99KQ0	Gene names	Sox9, Sox-9
Domain Architecture
Description	Transcription factor SOX-9.

AMELY_HUMAN
NC score	0.016272 (rank : 255)	θ value	4.03905 (rank : 126)
Query Neighborhood Hits	197	Target Neighborhood Hits	57	Shared Neighborhood Hits	6
SwissProt Accessions	Q99218, Q6RWT1	Gene names	AMELY, AMGL, AMGY
Domain Architecture
Description	Amelogenin, Y isoform precursor.

ACINU_MOUSE
NC score	0.015611 (rank : 256)	θ value	5.27518 (rank : 140)
Query Neighborhood Hits	197	Target Neighborhood Hits	712	Shared Neighborhood Hits	21
SwissProt Accessions	Q9JIX8, Q9CSN7, Q9CSR9, Q9CSX7, Q9R046, Q9R047	Gene names	Acin1, Acinus
Domain Architecture
Description	Apoptotic chromatin condensation inducer in the nucleus (Acinus).

OSBL5_HUMAN
NC score	0.015165 (rank : 257)	θ value	4.03905 (rank : 135)
Query Neighborhood Hits	197	Target Neighborhood Hits	117	Shared Neighborhood Hits	5
SwissProt Accessions	Q9H0X9, Q9BZB0, Q9P1Z4	Gene names	OSBPL5, KIAA1534, ORP5
Domain Architecture
Description	Oxysterol-binding protein-related protein 5 (OSBP-related protein 5) (ORP-5).

CAC1G_HUMAN
NC score	0.014541 (rank : 258)	θ value	3.0926 (rank : 115)
Query Neighborhood Hits	197	Target Neighborhood Hits	587	Shared Neighborhood Hits	42
SwissProt Accessions	O43497, O43498, O94770, Q9NYU4, Q9NYU5, Q9NYU6, Q9NYU7, Q9NYU8, Q9NYU9, Q9NYV0, Q9NYV1, Q9UHN9, Q9UHP0, Q9ULU6, Q9UNG7, Q9Y5T2, Q9Y5T3	Gene names	CACNA1G, KIAA1123
Domain Architecture
Description	Voltage-dependent T-type calcium channel subunit alpha-1G (Voltage- gated calcium channel subunit alpha Cav3.1) (Cav3.1c) (NBR13).

RERE_MOUSE
NC score	0.014209 (rank : 259)	θ value	6.88961 (rank : 170)
Query Neighborhood Hits	197	Target Neighborhood Hits	785	Shared Neighborhood Hits	41
SwissProt Accessions	Q80TZ9	Gene names	Rere, Atr2, Kiaa0458
Domain Architecture	No domain graphic available
Description	Arginine-glutamic acid dipeptide repeats protein (Atrophin-2).

YLPM1_HUMAN
NC score	0.013746 (rank : 260)	θ value	8.99809 (rank : 197)
Query Neighborhood Hits	197	Target Neighborhood Hits	670	Shared Neighborhood Hits	34
SwissProt Accessions	P49750, P49752, Q96I64, Q9P1V7	Gene names	YLPM1, C14orf170, ZAP3
Domain Architecture
Description	YLP motif-containing protein 1 (Nuclear protein ZAP3) (ZAP113).

SDC3_MOUSE
NC score	0.013293 (rank : 261)	θ value	5.27518 (rank : 155)
Query Neighborhood Hits	197	Target Neighborhood Hits	107	Shared Neighborhood Hits	10
SwissProt Accessions	Q64519, Q3UDD9, Q6ZQA4, Q7TQD4	Gene names	Sdc3, Kiaa0468
Domain Architecture
Description	Syndecan-3 precursor (SYND3).

MUC5B_HUMAN
NC score	0.013177 (rank : 262)	θ value	5.27518 (rank : 150)
Query Neighborhood Hits	197	Target Neighborhood Hits	1020	Shared Neighborhood Hits	36
SwissProt Accessions	Q9HC84, O00447, O00573, O14985, O15494, O95291, O95451, Q14881, Q99552, Q9UE28	Gene names	MUC5B, MUC5
Domain Architecture
Description	Mucin-5B precursor (Mucin-5 subtype B, tracheobronchial) (High molecular weight salivary mucin MG1) (Sublingual gland mucin).

DDB1_HUMAN
NC score	0.012842 (rank : 263)	θ value	8.99809 (rank : 185)
Query Neighborhood Hits	197	Target Neighborhood Hits	15	Shared Neighborhood Hits	3
SwissProt Accessions	Q16531, O15176, Q13289, Q58F96	Gene names	DDB1
Domain Architecture
Description	DNA damage-binding protein 1 (Damage-specific DNA-binding protein 1) (UV-damaged DNA-binding factor) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) (Xeroderma pigmentosum group E- complementing protein) (XPCe) (XPE-binding factor) (XPE-BF) (X- associated protein 1) (XAP-1).

SIN3A_MOUSE
NC score	0.012841 (rank : 264)	θ value	2.36792 (rank : 113)
Query Neighborhood Hits	197	Target Neighborhood Hits	169	Shared Neighborhood Hits	11
SwissProt Accessions	Q60520, Q60820, Q62139, Q62140, Q7TPU8, Q7TSZ2	Gene names	Sin3a
Domain Architecture
Description	Paired amphipathic helix protein Sin3a (Transcriptional corepressor Sin3a) (Histone deacetylase complex subunit Sin3a).

CCDC4_HUMAN
NC score	0.012739 (rank : 265)	θ value	8.99809 (rank : 184)
Query Neighborhood Hits	197	Target Neighborhood Hits	104	Shared Neighborhood Hits	8
SwissProt Accessions	Q6ZU67, Q58A26, Q58A27	Gene names	CCDC4
Domain Architecture	No domain graphic available
Description	Coiled-coil domain-containing protein 4.

CLOCK_MOUSE
NC score	0.012678 (rank : 266)	θ value	1.81305 (rank : 89)
Query Neighborhood Hits	197	Target Neighborhood Hits	148	Shared Neighborhood Hits	8
SwissProt Accessions	O08785	Gene names	Clock
Domain Architecture
Description	Circadian locomoter output cycles protein kaput (mCLOCK).

MAP1B_MOUSE
NC score	0.012230 (rank : 267)	θ value	8.99809 (rank : 190)
Query Neighborhood Hits	197	Target Neighborhood Hits	977	Shared Neighborhood Hits	36
SwissProt Accessions	P14873	Gene names	Map1b, Mtap1b, Mtap5
Domain Architecture	No domain graphic available
Description	Microtubule-associated protein 1B (MAP 1B) (MAP1.2) (MAP1(X)) [Contains: MAP1 light chain LC1].

SFPQ_HUMAN
NC score	0.012208 (rank : 268)	θ value	1.81305 (rank : 93)
Query Neighborhood Hits	197	Target Neighborhood Hits	986	Shared Neighborhood Hits	29
SwissProt Accessions	P23246, P30808	Gene names	SFPQ, PSF
Domain Architecture
Description	Splicing factor, proline- and glutamine-rich (Polypyrimidine tract- binding protein-associated-splicing factor) (PTB-associated-splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100 kDa DNA-pairing protein) (hPOMp100).

SETD2_HUMAN
NC score	0.012140 (rank : 269)	θ value	4.03905 (rank : 139)
Query Neighborhood Hits	197	Target Neighborhood Hits	412	Shared Neighborhood Hits	16
SwissProt Accessions	Q9BYW2, O75397, O75405, Q17RW8, Q5BKS9, Q5QGN2, Q69YI5, Q6IN64, Q6ZN53, Q6ZS25, Q8N3R0, Q8TCN0, Q9C0D1, Q9H696, Q9NZW9	Gene names	SETD2, HIF1, HYPB, KIAA1732, SET2
Domain Architecture	No domain graphic available
Description	Histone-lysine N-methyltransferase, H3 lysine-36-specific (EC 2.1.1.43) (SET domain-containing protein 2) (hSET2) (Huntingtin- interacting protein HYPB) (Huntingtin-interacting protein 1) (HIF-1) (p231HBP).

LDB3_HUMAN
NC score	0.011260 (rank : 270)	θ value	1.81305 (rank : 92)
Query Neighborhood Hits	197	Target Neighborhood Hits	497	Shared Neighborhood Hits	23
SwissProt Accessions	O75112, Q5K6N9, Q5K6P0, Q5K6P1, Q96FH2, Q9Y4Z3, Q9Y4Z4, Q9Y4Z5	Gene names	LDB3, KIAA0613, ZASP
Domain Architecture	No domain graphic available
Description	LIM domain-binding protein 3 (Z-band alternatively spliced PDZ-motif protein) (Protein cypher).

K0174_HUMAN
NC score	0.010849 (rank : 271)	θ value	6.88961 (rank : 164)
Query Neighborhood Hits	197	Target Neighborhood Hits	37	Shared Neighborhood Hits	4
SwissProt Accessions	P53990, Q9BQ81, Q9BWN2	Gene names	KIAA0174
Domain Architecture
Description	Protein KIAA0174 (Putative MAPK-activating protein PM28).

MDN1_HUMAN
NC score	0.010493 (rank : 272)	θ value	5.27518 (rank : 149)
Query Neighborhood Hits	197	Target Neighborhood Hits	662	Shared Neighborhood Hits	13
SwissProt Accessions	Q9NU22, O15019	Gene names	MDN1, KIAA0301
Domain Architecture
Description	Midasin (MIDAS-containing protein).

FHOD1_MOUSE
NC score	0.010472 (rank : 273)	θ value	5.27518 (rank : 144)
Query Neighborhood Hits	197	Target Neighborhood Hits	217	Shared Neighborhood Hits	16
SwissProt Accessions	Q6P9Q4, Q8BMK2	Gene names	Fhod1, Fhos1
Domain Architecture	No domain graphic available
Description	FH1/FH2 domain-containing protein (Formin homolog overexpressed in spleen) (FHOS) (Formin homology 2 domain-containing protein 1).

LDB3_MOUSE
NC score	0.010371 (rank : 274)	θ value	5.27518 (rank : 148)
Query Neighborhood Hits	197	Target Neighborhood Hits	510	Shared Neighborhood Hits	25
SwissProt Accessions	Q9JKS4, Q6A038, Q811P2, Q811P3, Q811P4, Q811P5, Q9D130, Q9JKS3, Q9R0Z1, Q9WVH1, Q9WVH2	Gene names	Ldb3, Kiaa0613
Domain Architecture	No domain graphic available
Description	LIM domain-binding protein 3 (Z-band alternatively spliced PDZ-motif protein) (Protein cypher) (Protein oracle).

WASL_MOUSE
NC score	0.010261 (rank : 275)	θ value	6.88961 (rank : 176)
Query Neighborhood Hits	197	Target Neighborhood Hits	339	Shared Neighborhood Hits	16
SwissProt Accessions	Q91YD9	Gene names	Wasl
Domain Architecture	No domain graphic available
Description	Neural Wiskott-Aldrich syndrome protein (N-WASP).

EP400_HUMAN
NC score	0.008893 (rank : 276)	θ value	8.99809 (rank : 186)
Query Neighborhood Hits	197	Target Neighborhood Hits	556	Shared Neighborhood Hits	32
SwissProt Accessions	Q96L91, O15411, Q6P2F5, Q8N8Q7, Q8NE05, Q96JK7, Q9P230	Gene names	EP400, CAGH32, KIAA1498, KIAA1818, TNRC12
Domain Architecture	No domain graphic available
Description	E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa SWI2/SNF2-related protein) (Domino homolog) (hDomino) (CAG repeat protein 32) (Trinucleotide repeat-containing gene 12 protein).

FUT7_MOUSE
NC score	0.008493 (rank : 277)	θ value	4.03905 (rank : 130)
Query Neighborhood Hits	197	Target Neighborhood Hits	12	Shared Neighborhood Hits	2
SwissProt Accessions	Q11131	Gene names	Fut7
Domain Architecture
Description	Alpha-(1,3)-fucosyltransferase (EC 2.4.1.-) (Galactoside 3-L- fucosyltransferase) (Fucosyltransferase 7) (FUCT-VII).

RANB9_MOUSE
NC score	0.008213 (rank : 278)	θ value	6.88961 (rank : 169)
Query Neighborhood Hits	197	Target Neighborhood Hits	58	Shared Neighborhood Hits	2
SwissProt Accessions	P69566	Gene names	Ranbp9, Ranbpm
Domain Architecture	No domain graphic available
Description	Ran-binding protein 9 (RanBP9) (Ran-binding protein M) (RanBPM) (B cell antigen receptor Ig beta-associated protein 1) (IBAP-1).

CSPG3_HUMAN
NC score	0.007844 (rank : 279)	θ value	0.62314 (rank : 68)
Query Neighborhood Hits	197	Target Neighborhood Hits	676	Shared Neighborhood Hits	22
SwissProt Accessions	O14594, Q9UPK6	Gene names	CSPG3, NCAN, NEUR
Domain Architecture
Description	Neurocan core protein precursor (Chondroitin sulfate proteoglycan 3).

BORG5_MOUSE
NC score	0.007724 (rank : 280)	θ value	8.99809 (rank : 183)
Query Neighborhood Hits	197	Target Neighborhood Hits	61	Shared Neighborhood Hits	5
SwissProt Accessions	Q91W92, Q9D8M1	Gene names	Cdc42ep1, Borg5, Cep1
Domain Architecture	No domain graphic available
Description	Cdc42 effector protein 1 (Binder of Rho GTPases 5).

CSKI1_MOUSE
NC score	0.007633 (rank : 281)	θ value	1.06291 (rank : 75)
Query Neighborhood Hits	197	Target Neighborhood Hits	1031	Shared Neighborhood Hits	43
SwissProt Accessions	Q6P9K8, Q6ZPU2, Q8BWU2, Q8BX99, Q9CXH0	Gene names	Caskin1, Kiaa1306
Domain Architecture	No domain graphic available
Description	Caskin-1 (CASK-interacting protein 1).

SMCA2_HUMAN
NC score	0.006678 (rank : 282)	θ value	6.88961 (rank : 172)
Query Neighborhood Hits	197	Target Neighborhood Hits	503	Shared Neighborhood Hits	20
SwissProt Accessions	P51531	Gene names	SMARCA2, BRM, SNF2A, SNF2L2
Domain Architecture
Description	Probable global transcription activator SNF2L2 (EC 3.6.1.-) (ATP- dependent helicase SMARCA2) (SNF2-alpha) (SWI/SNF-related matrix- associated actin-dependent regulator of chromatin subfamily A member 2) (hBRM).

DNMBP_MOUSE
NC score	0.006373 (rank : 283)	θ value	2.36792 (rank : 98)
Query Neighborhood Hits	197	Target Neighborhood Hits	435	Shared Neighborhood Hits	7
SwissProt Accessions	Q6TXD4, Q6ZQ05, Q8CEW8, Q8R0Y2	Gene names	Dnmbp, Kiaa1010
Domain Architecture	No domain graphic available
Description	Dynamin-binding protein (Scaffold protein Tuba).

SYN2_HUMAN
NC score	0.006370 (rank : 284)	θ value	8.99809 (rank : 195)
Query Neighborhood Hits	197	Target Neighborhood Hits	213	Shared Neighborhood Hits	13
SwissProt Accessions	Q92777	Gene names	SYN2
Domain Architecture
Description	Synapsin-2 (Synapsin II).

CTND2_MOUSE
NC score	0.006025 (rank : 285)	θ value	6.88961 (rank : 157)
Query Neighborhood Hits	197	Target Neighborhood Hits	227	Shared Neighborhood Hits	18
SwissProt Accessions	O35927	Gene names	Ctnnd2, Catnd2, Nprap
Domain Architecture
Description	Catenin delta-2 (Neural plakophilin-related ARM-repeat protein) (NPRAP) (Neurojungin).

CEND1_HUMAN
NC score	0.005748 (rank : 286)	θ value	5.27518 (rank : 142)
Query Neighborhood Hits	197	Target Neighborhood Hits	284	Shared Neighborhood Hits	5
SwissProt Accessions	Q8WZ64, Q4W5D2, Q7Z2L5, Q96L70, Q96P49, Q9Y4E4	Gene names	CENTD1, ARAP2, KIAA0580
Domain Architecture	No domain graphic available
Description	Centaurin-delta 1 (Cnt-d1) (Arf-GAP, Rho-GAP, ankyrin repeat and pleckstrin homology domain-containing protein 2) (PARX protein).

PARD3_HUMAN
NC score	0.005252 (rank : 287)	θ value	4.03905 (rank : 136)
Query Neighborhood Hits	197	Target Neighborhood Hits	312	Shared Neighborhood Hits	6
SwissProt Accessions	Q8TEW0, Q8TEW1, Q8TEW2, Q8TEW3, Q96K28, Q96RM6, Q96RM7, Q9BY57, Q9BY58, Q9HC48, Q9NWL4, Q9NYE6	Gene names	PARD3, PAR3, PAR3A
Domain Architecture
Description	Partitioning-defective 3 homolog (PARD-3) (PAR-3) (Atypical PKC isotype-specific-interacting protein) (ASIP) (CTCL tumor antigen se2- 5) (PAR3-alpha).

PABP1_MOUSE
NC score	0.004658 (rank : 288)	θ value	8.99809 (rank : 193)
Query Neighborhood Hits	197	Target Neighborhood Hits	278	Shared Neighborhood Hits	10
SwissProt Accessions	P29341	Gene names	Pabpc1, Pabp1
Domain Architecture
Description	Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1).

WNK2_HUMAN
NC score	0.004546 (rank : 289)	θ value	1.38821 (rank : 87)
Query Neighborhood Hits	197	Target Neighborhood Hits	1407	Shared Neighborhood Hits	41
SwissProt Accessions	Q9Y3S1, Q8IY36, Q9C0A3, Q9H3P4	Gene names	WNK2, KIAA1760, PRKWNK2
Domain Architecture
Description	Serine/threonine-protein kinase WNK2 (EC 2.7.11.1) (Protein kinase with no lysine 2) (Protein kinase, lysine-deficient 2).

WNK1_MOUSE
NC score	0.003722 (rank : 290)	θ value	3.0926 (rank : 125)
Query Neighborhood Hits	197	Target Neighborhood Hits	1179	Shared Neighborhood Hits	40
SwissProt Accessions	P83741	Gene names	Wnk1, Prkwnk1
Domain Architecture
Description	Serine/threonine-protein kinase WNK1 (EC 2.7.11.1) (Protein kinase with no lysine 1) (Protein kinase, lysine-deficient 1).

FOXJ2_HUMAN
NC score	0.002849 (rank : 291)	θ value	5.27518 (rank : 145)
Query Neighborhood Hits	197	Target Neighborhood Hits	239	Shared Neighborhood Hits	8
SwissProt Accessions	Q9P0K8, Q96PS9, Q9NSN5	Gene names	FOXJ2, FHX
Domain Architecture
Description	Forkhead box protein J2 (Fork head homologous X).

NALP5_MOUSE
NC score	0.002765 (rank : 292)	θ value	8.99809 (rank : 192)
Query Neighborhood Hits	197	Target Neighborhood Hits	560	Shared Neighborhood Hits	14
SwissProt Accessions	Q9R1M5, Q9JLR2	Gene names	Nalp5, Mater
Domain Architecture
Description	NACHT, LRR and PYD-containing protein 5 (Maternal antigen that embryos require) (Mater protein) (Ooplasm-specific protein 1) (OP1).

TRI47_HUMAN
NC score	0.002368 (rank : 293)	θ value	6.88961 (rank : 174)
Query Neighborhood Hits	197	Target Neighborhood Hits	286	Shared Neighborhood Hits	2
SwissProt Accessions	Q96LD4, Q96GU5, Q9BRN7	Gene names	TRIM47, GOA, RNF100
Domain Architecture	No domain graphic available
Description	Tripartite motif-containing protein 47 (Gene overexpressed in astrocytoma protein) (RING finger protein 100).

WNK1_HUMAN
NC score	0.002068 (rank : 294)	θ value	2.36792 (rank : 114)
Query Neighborhood Hits	197	Target Neighborhood Hits	1158	Shared Neighborhood Hits	31
SwissProt Accessions	Q9H4A3, O15052, Q86WL5, Q8N673, Q9P1S9	Gene names	WNK1, KDP, KIAA0344, PRKWNK1
Domain Architecture
Description	Serine/threonine-protein kinase WNK1 (EC 2.7.11.1) (Protein kinase with no lysine 1) (Protein kinase, lysine-deficient 1) (Kinase deficient protein).

LATS1_HUMAN
NC score	0.001421 (rank : 295)	θ value	1.38821 (rank : 85)
Query Neighborhood Hits	197	Target Neighborhood Hits	1057	Shared Neighborhood Hits	26
SwissProt Accessions	O95835, Q6PKD0	Gene names	LATS1, WARTS
Domain Architecture	No domain graphic available
Description	Serine/threonine-protein kinase LATS1 (EC 2.7.11.1) (Large tumor suppressor homolog 1) (WARTS protein kinase) (h-warts).

AMHR2_HUMAN
NC score	-0.000664 (rank : 296)	θ value	8.99809 (rank : 182)
Query Neighborhood Hits	197	Target Neighborhood Hits	715	Shared Neighborhood Hits	11
SwissProt Accessions	Q16671, Q13762	Gene names	AMHR2, AMHR
Domain Architecture
Description	Anti-Muellerian hormone type-2 receptor precursor (EC 2.7.11.30) (Anti-Muellerian hormone type II receptor) (AMH type II receptor) (MIS type II receptor) (MISRII) (MRII).

SALL3_HUMAN
NC score	-0.000999 (rank : 297)	θ value	5.27518 (rank : 154)
Query Neighborhood Hits	197	Target Neighborhood Hits	1066	Shared Neighborhood Hits	25
SwissProt Accessions	Q9BXA9, Q9UGH1	Gene names	SALL3
Domain Architecture	No domain graphic available
Description	Sal-like protein 3 (Zinc finger protein SALL3) (hSALL3).

LATS1_MOUSE
NC score	-0.001676 (rank : 298)	θ value	8.99809 (rank : 189)
Query Neighborhood Hits	197	Target Neighborhood Hits	1027	Shared Neighborhood Hits	16
SwissProt Accessions	Q8BYR2, Q9Z0W4	Gene names	Lats1, Warts
Domain Architecture	No domain graphic available
Description	Serine/threonine-protein kinase LATS1 (EC 2.7.11.1) (Large tumor suppressor homolog 1) (WARTS protein kinase).

ZBT38_HUMAN
NC score	-0.001741 (rank : 299)	θ value	1.81305 (rank : 95)
Query Neighborhood Hits	197	Target Neighborhood Hits	885	Shared Neighborhood Hits	11
SwissProt Accessions	Q8NAP3	Gene names	ZBTB38
Domain Architecture	No domain graphic available
Description	Zinc finger and BTB domain-containing protein 38.

MTR1L_HUMAN
NC score	-0.001868 (rank : 300)	θ value	8.99809 (rank : 191)
Query Neighborhood Hits	197	Target Neighborhood Hits	1180	Shared Neighborhood Hits	34
SwissProt Accessions	Q13585	Gene names	GPR50
Domain Architecture
Description	Melatonin-related receptor (G protein-coupled receptor 50) (H9).

DYR1B_HUMAN
NC score	-0.002061 (rank : 301)	θ value	6.88961 (rank : 158)
Query Neighborhood Hits	197	Target Neighborhood Hits	831	Shared Neighborhood Hits	16
SwissProt Accessions	Q9Y463, O75258, O75788, O75789	Gene names	DYRK1B, MIRK
Domain Architecture
Description	Dual specificity tyrosine-phosphorylation-regulated kinase 1B (EC 2.7.12.1) (Mirk protein kinase) (Minibrain-related kinase).

M3K14_MOUSE
NC score	-0.002465 (rank : 302)	θ value	6.88961 (rank : 166)
Query Neighborhood Hits	197	Target Neighborhood Hits	889	Shared Neighborhood Hits	13
SwissProt Accessions	Q9WUL6	Gene names	Map3k14, Nik
Domain Architecture
Description	Mitogen-activated protein kinase kinase kinase 14 (EC 2.7.11.25) (NF- kappa beta-inducing kinase) (Serine/threonine-protein kinase NIK).