Please be patient as the page loads

Stop Image Loading/Displaying

Network neighborhood for query Sequence : LBX1_MOUSE

For an explanation of this page, click here

LBX1_MOUSE
SwissProt Accessions	P52955	Gene names	Lbx1, Lbx1h
Domain Architecture
Description	Transcription factor LBX1.
Rank Plots	Jump to hits sorted by θ Jump to hits sorted by NC score

Hits sorted by θ

LBX1_HUMAN
θ value	4.31301e-119 (rank : 1)	NC score	0.998120 (rank : 2)
Query Neighborhood Hits	349	Target Neighborhood Hits	357	Shared Neighborhood Hits	344
SwissProt Accessions	P52954	Gene names	LBX1
Domain Architecture
Description	Transcription factor LBX1.

LBX1_MOUSE
θ value	5.28454e-109 (rank : 2)	NC score	0.999962 (rank : 1)
Query Neighborhood Hits	349	Target Neighborhood Hits	349	Shared Neighborhood Hits	349
SwissProt Accessions	P52955	Gene names	Lbx1, Lbx1h
Domain Architecture
Description	Transcription factor LBX1.

TLX3_MOUSE
θ value	5.25075e-16 (rank : 3)	NC score	0.930244 (rank : 39)
Query Neighborhood Hits	349	Target Neighborhood Hits	346	Shared Neighborhood Hits	315
SwissProt Accessions	O55144	Gene names	Tlx3, Hox11l2, Rnx, Tlx1l2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox TLX-3) (Homeobox protein Hox-11L2) (Respiratory neuron homeobox protein).

TLX1_MOUSE
θ value	8.95645e-16 (rank : 4)	NC score	0.927369 (rank : 47)
Query Neighborhood Hits	349	Target Neighborhood Hits	347	Shared Neighborhood Hits	311
SwissProt Accessions	P43345	Gene names	Tlx1, Hox11, Tlx-1
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (Homeobox TLX-1).

TLX2_HUMAN
θ value	1.52774e-15 (rank : 5)	NC score	0.937331 (rank : 17)
Query Neighborhood Hits	349	Target Neighborhood Hits	352	Shared Neighborhood Hits	311
SwissProt Accessions	O43763, Q9UQ48	Gene names	TLX2, HOX11L1, NCX
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Neural crest homeobox protein).

TLX2_MOUSE
θ value	1.52774e-15 (rank : 6)	NC score	0.938506 (rank : 15)
Query Neighborhood Hits	349	Target Neighborhood Hits	336	Shared Neighborhood Hits	310
SwissProt Accessions	Q61663	Gene names	Tlx2, Hox11l1, Tlx1l1
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Homeobox TLX-2) (PMUR10F).

TLX3_HUMAN
θ value	1.52774e-15 (rank : 7)	NC score	0.924893 (rank : 56)
Query Neighborhood Hits	349	Target Neighborhood Hits	403	Shared Neighborhood Hits	313
SwissProt Accessions	O43711, Q96AD3	Gene names	TLX3, HOX11L2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox protein Hox-11L2).

TLX1_HUMAN
θ value	2.60593e-15 (rank : 8)	NC score	0.927131 (rank : 48)
Query Neighborhood Hits	349	Target Neighborhood Hits	347	Shared Neighborhood Hits	311
SwissProt Accessions	P31314, O75699, Q9HCA0	Gene names	TLX1, HOX11, TCL3
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (TCL-3 proto-oncogene).

NKX25_MOUSE
θ value	8.38298e-14 (rank : 9)	NC score	0.929241 (rank : 40)
Query Neighborhood Hits	349	Target Neighborhood Hits	347	Shared Neighborhood Hits	316
SwissProt Accessions	P42582, P97335	Gene names	Nkx2-5, Csx, Nkx-2.5, Nkx2e
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

NKX23_MOUSE
θ value	1.42992e-13 (rank : 10)	NC score	0.927387 (rank : 46)
Query Neighborhood Hits	349	Target Neighborhood Hits	340	Shared Neighborhood Hits	323
SwissProt Accessions	P97334, Q9QZ60, Q9WV67	Gene names	Nkx2-3, Nkx-2.3, Nkx2c
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NK-2 homolog C) (Nkx2-C) (Homeobox protein NK-2 homolog 3).

NKX25_HUMAN
θ value	2.43908e-13 (rank : 11)	NC score	0.931755 (rank : 35)
Query Neighborhood Hits	349	Target Neighborhood Hits	338	Shared Neighborhood Hits	321
SwissProt Accessions	P52952	Gene names	NKX2-5, CSX, NKX2.5, NKX2E
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

BARH1_HUMAN
θ value	3.18553e-13 (rank : 12)	NC score	0.937048 (rank : 19)
Query Neighborhood Hits	349	Target Neighborhood Hits	373	Shared Neighborhood Hits	321
SwissProt Accessions	Q9BZE3, Q9NY88	Gene names	BARHL1
Domain Architecture
Description	BarH-like 1 homeobox protein.

BARH1_MOUSE
θ value	3.18553e-13 (rank : 13)	NC score	0.938378 (rank : 16)
Query Neighborhood Hits	349	Target Neighborhood Hits	350	Shared Neighborhood Hits	321
SwissProt Accessions	P63157, Q9JK26	Gene names	Barhl1, Bhx1, Mbh2
Domain Architecture	No domain graphic available
Description	BarH-like 1 homeobox protein (Bar-class homeodomain protein MBH2) (BarH-related homeobox protein 1).

BARX2_HUMAN
θ value	9.26847e-13 (rank : 14)	NC score	0.945479 (rank : 7)
Query Neighborhood Hits	349	Target Neighborhood Hits	387	Shared Neighborhood Hits	324
SwissProt Accessions	Q9UMQ3, O43518	Gene names	BARX2
Domain Architecture
Description	Homeobox protein BarH-like 2.

NKX23_HUMAN
θ value	9.26847e-13 (rank : 15)	NC score	0.928279 (rank : 43)
Query Neighborhood Hits	349	Target Neighborhood Hits	346	Shared Neighborhood Hits	326
SwissProt Accessions	Q8TAU0, Q9NYS6	Gene names	NKX2-3, NKX23, NKX2C
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NKX-2.3) (Homeobox protein NK-2 homolog C).

BARH2_HUMAN
θ value	1.2105e-12 (rank : 16)	NC score	0.931915 (rank : 32)
Query Neighborhood Hits	349	Target Neighborhood Hits	419	Shared Neighborhood Hits	322
SwissProt Accessions	Q9NY43, Q7Z4N7	Gene names	BARHL2
Domain Architecture
Description	BarH-like 2 homeobox protein.

BARH2_MOUSE
θ value	1.2105e-12 (rank : 17)	NC score	0.933196 (rank : 26)
Query Neighborhood Hits	349	Target Neighborhood Hits	397	Shared Neighborhood Hits	322
SwissProt Accessions	Q8VIB5, Q66L43	Gene names	Barhl2, Barh1, Mbh1
Domain Architecture	No domain graphic available
Description	BarH-like 2 homeobox protein (Bar-class homeodomain protein MBH1) (Homeobox protein B-H1).

BARX1_MOUSE
θ value	2.0648e-12 (rank : 18)	NC score	0.944854 (rank : 8)
Query Neighborhood Hits	349	Target Neighborhood Hits	324	Shared Neighborhood Hits	314
SwissProt Accessions	Q9ER42, O09066, P70159, Q9ERV2	Gene names	Barx1
Domain Architecture
Description	Homeobox protein BarH-like 1.

BARX1_HUMAN
θ value	2.69671e-12 (rank : 19)	NC score	0.946205 (rank : 6)
Query Neighborhood Hits	349	Target Neighborhood Hits	326	Shared Neighborhood Hits	314
SwissProt Accessions	Q9HBU1	Gene names	BARX1
Domain Architecture
Description	Homeobox protein BarH-like 1.

BARX2_MOUSE
θ value	2.69671e-12 (rank : 20)	NC score	0.948293 (rank : 3)
Query Neighborhood Hits	349	Target Neighborhood Hits	335	Shared Neighborhood Hits	323
SwissProt Accessions	O08686	Gene names	Barx2
Domain Architecture
Description	Homeobox protein BarH-like 2.

GBX2_HUMAN
θ value	2.69671e-12 (rank : 21)	NC score	0.931768 (rank : 34)
Query Neighborhood Hits	349	Target Neighborhood Hits	322	Shared Neighborhood Hits	304
SwissProt Accessions	P52951, O43833, Q53RX5, Q9Y5Y1	Gene names	GBX2
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2).

GBX2_MOUSE
θ value	2.69671e-12 (rank : 22)	NC score	0.931447 (rank : 36)
Query Neighborhood Hits	349	Target Neighborhood Hits	326	Shared Neighborhood Hits	302
SwissProt Accessions	P48031	Gene names	Gbx2, Mmoxa, Stra7
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2) (Homeobox protein STRA7).

HMX2_MOUSE
θ value	2.69671e-12 (rank : 23)	NC score	0.941946 (rank : 9)
Query Neighborhood Hits	349	Target Neighborhood Hits	354	Shared Neighborhood Hits	320
SwissProt Accessions	P43687, Q8R1Q2	Gene names	Hmx2, Nkx-5.2, Nkx5-2
Domain Architecture
Description	Homeobox protein HMX2 (Homeobox protein Nkx-5.2).

HLX1_MOUSE
θ value	3.52202e-12 (rank : 24)	NC score	0.924058 (rank : 58)
Query Neighborhood Hits	349	Target Neighborhood Hits	362	Shared Neighborhood Hits	310
SwissProt Accessions	Q61670	Gene names	Hlx1, Hlx
Domain Architecture
Description	Homeobox protein HLX1.

NKX31_HUMAN
θ value	7.84624e-12 (rank : 25)	NC score	0.947994 (rank : 5)
Query Neighborhood Hits	349	Target Neighborhood Hits	331	Shared Neighborhood Hits	313
SwissProt Accessions	Q99801, O15465, Q9H2P4, Q9H2P5, Q9H2P6, Q9H2P7, Q9HBG0	Gene names	NKX3-1, NKX3.1, NKX3A
Domain Architecture
Description	Homeobox protein Nkx-3.1.

TITF1_HUMAN
θ value	7.84624e-12 (rank : 26)	NC score	0.914921 (rank : 77)
Query Neighborhood Hits	349	Target Neighborhood Hits	332	Shared Neighborhood Hits	315
SwissProt Accessions	P43699, O14954, O14955, Q9BRJ8	Gene names	TITF1, NKX2-1, NKX2A, TTF1
Domain Architecture
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1) (Homeobox protein NK-2 homolog A).

TITF1_MOUSE
θ value	7.84624e-12 (rank : 27)	NC score	0.916159 (rank : 72)
Query Neighborhood Hits	349	Target Neighborhood Hits	335	Shared Neighborhood Hits	315
SwissProt Accessions	P50220	Gene names	Titf1, Nkx-2.1, Nkx2-1, Ttf1
Domain Architecture	No domain graphic available
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1).

HLX1_HUMAN
θ value	1.33837e-11 (rank : 28)	NC score	0.923179 (rank : 64)
Query Neighborhood Hits	349	Target Neighborhood Hits	370	Shared Neighborhood Hits	311
SwissProt Accessions	Q14774, Q15988	Gene names	HLX1
Domain Architecture
Description	Homeobox protein HLX1 (Homeobox protein HB24).

NKX24_HUMAN
θ value	1.33837e-11 (rank : 29)	NC score	0.913319 (rank : 83)
Query Neighborhood Hits	349	Target Neighborhood Hits	366	Shared Neighborhood Hits	317
SwissProt Accessions	Q9H2Z4	Gene names	NKX2-4, NKX2D
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

NKX24_MOUSE
θ value	1.33837e-11 (rank : 30)	NC score	0.915865 (rank : 74)
Query Neighborhood Hits	349	Target Neighborhood Hits	356	Shared Neighborhood Hits	315
SwissProt Accessions	Q9EQM3, Q9EQM4	Gene names	Nkx2-4, Nkx2d
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

GBX1_HUMAN
θ value	1.74796e-11 (rank : 31)	NC score	0.933300 (rank : 25)
Query Neighborhood Hits	349	Target Neighborhood Hits	334	Shared Neighborhood Hits	300
SwissProt Accessions	Q14549	Gene names	GBX1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

GBX1_MOUSE
θ value	1.74796e-11 (rank : 32)	NC score	0.931820 (rank : 33)
Query Neighborhood Hits	349	Target Neighborhood Hits	350	Shared Neighborhood Hits	299
SwissProt Accessions	P82976, Q8CGW5	Gene names	Gbx1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

MSX2_MOUSE
θ value	1.74796e-11 (rank : 33)	NC score	0.928530 (rank : 42)
Query Neighborhood Hits	349	Target Neighborhood Hits	345	Shared Neighborhood Hits	314
SwissProt Accessions	Q03358, Q63856	Gene names	Msx2, Hox-8.1, Msx-2
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8.1).

NKX28_MOUSE
θ value	1.74796e-11 (rank : 34)	NC score	0.936775 (rank : 20)
Query Neighborhood Hits	349	Target Neighborhood Hits	347	Shared Neighborhood Hits	327
SwissProt Accessions	O70584	Gene names	Nkx2-8, Nkx-2.9, Nkx2-9, Nkx2h
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H) (Homeobox protein Nkx-2.9).

NKX32_HUMAN
θ value	1.74796e-11 (rank : 35)	NC score	0.933173 (rank : 27)
Query Neighborhood Hits	349	Target Neighborhood Hits	323	Shared Neighborhood Hits	309
SwissProt Accessions	P78367	Gene names	BAPX1, NKX3B
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

NKX32_MOUSE
θ value	1.74796e-11 (rank : 36)	NC score	0.932498 (rank : 28)
Query Neighborhood Hits	349	Target Neighborhood Hits	326	Shared Neighborhood Hits	309
SwissProt Accessions	P97503	Gene names	Bapx1, Nkx-3.2, Nkx3-2, Nkx3b
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

BSH_MOUSE
θ value	2.98157e-11 (rank : 37)	NC score	0.948086 (rank : 4)
Query Neighborhood Hits	349	Target Neighborhood Hits	349	Shared Neighborhood Hits	323
SwissProt Accessions	Q810B3	Gene names	Bsx
Domain Architecture	No domain graphic available
Description	Brain-specific homeobox protein homolog.

NKX31_MOUSE
θ value	3.89403e-11 (rank : 38)	NC score	0.940013 (rank : 13)
Query Neighborhood Hits	349	Target Neighborhood Hits	379	Shared Neighborhood Hits	312
SwissProt Accessions	P97436, O09087	Gene names	Nkx3-1, Nkx-3.1, Nkx3a
Domain Architecture
Description	Homeobox protein Nkx-3.1.

HHEX_HUMAN
θ value	5.08577e-11 (rank : 39)	NC score	0.934327 (rank : 24)
Query Neighborhood Hits	349	Target Neighborhood Hits	358	Shared Neighborhood Hits	304
SwissProt Accessions	Q03014	Gene names	HHEX, HEX, PRH, PRHX
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

HHEX_MOUSE
θ value	5.08577e-11 (rank : 40)	NC score	0.936009 (rank : 22)
Query Neighborhood Hits	349	Target Neighborhood Hits	350	Shared Neighborhood Hits	307
SwissProt Accessions	P43120	Gene names	Hhex, Prhx
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

MSX2_HUMAN
θ value	8.67504e-11 (rank : 41)	NC score	0.930741 (rank : 37)
Query Neighborhood Hits	349	Target Neighborhood Hits	337	Shared Neighborhood Hits	313
SwissProt Accessions	P35548	Gene names	MSX2, HOX8
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8).

NKX28_HUMAN
θ value	8.67504e-11 (rank : 42)	NC score	0.936722 (rank : 21)
Query Neighborhood Hits	349	Target Neighborhood Hits	352	Shared Neighborhood Hits	332
SwissProt Accessions	O15522	Gene names	NKX2-8, NKX-2.8, NKX2G, NKX2H
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H).

HXB2_MOUSE
θ value	1.133e-10 (rank : 43)	NC score	0.913253 (rank : 84)
Query Neighborhood Hits	349	Target Neighborhood Hits	350	Shared Neighborhood Hits	304
SwissProt Accessions	P0C1T1	Gene names	Hoxb2, Hox-2.8
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-B2 (Hox-2.8).

HXC10_MOUSE
θ value	1.133e-10 (rank : 44)	NC score	0.877834 (rank : 160)
Query Neighborhood Hits	349	Target Neighborhood Hits	417	Shared Neighborhood Hits	308
SwissProt Accessions	P31257, P31312, Q7TMT7	Gene names	Hoxc10, Hox-3.6, Hoxc-10
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C10 (Hox-3.6).

DLX3_HUMAN
θ value	1.47974e-10 (rank : 45)	NC score	0.920608 (rank : 71)
Query Neighborhood Hits	349	Target Neighborhood Hits	369	Shared Neighborhood Hits	327
SwissProt Accessions	O60479	Gene names	DLX3
Domain Architecture
Description	Homeobox protein DLX-3.

DLX3_MOUSE
θ value	1.47974e-10 (rank : 46)	NC score	0.920824 (rank : 70)
Query Neighborhood Hits	349	Target Neighborhood Hits	367	Shared Neighborhood Hits	327
SwissProt Accessions	Q64205	Gene names	Dlx3
Domain Architecture
Description	Homeobox protein DLX-3.

HXC10_HUMAN
θ value	1.47974e-10 (rank : 47)	NC score	0.877808 (rank : 161)
Query Neighborhood Hits	349	Target Neighborhood Hits	417	Shared Neighborhood Hits	307
SwissProt Accessions	Q9NYD6, O15219, O15220, Q9BVD5	Gene names	HOXC10
Domain Architecture
Description	Homeobox protein Hox-C10.

MEOX1_HUMAN
θ value	1.47974e-10 (rank : 48)	NC score	0.926659 (rank : 50)
Query Neighborhood Hits	349	Target Neighborhood Hits	342	Shared Neighborhood Hits	318
SwissProt Accessions	P50221	Gene names	MEOX1, MOX1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

DLX4_MOUSE
θ value	1.9326e-10 (rank : 49)	NC score	0.925713 (rank : 53)
Query Neighborhood Hits	349	Target Neighborhood Hits	352	Shared Neighborhood Hits	317
SwissProt Accessions	P70436, Q3UM51, Q8R4I3	Gene names	Dlx4, Dlx7
Domain Architecture
Description	Homeobox protein DLX-4 (DLX-7).

MSX3_MOUSE
θ value	1.9326e-10 (rank : 50)	NC score	0.940360 (rank : 11)
Query Neighborhood Hits	349	Target Neighborhood Hits	330	Shared Neighborhood Hits	310
SwissProt Accessions	P70354, P70246, Q03360, Q80W10	Gene names	Msx3, Msx-3
Domain Architecture
Description	Homeobox protein MSX-3.

MSX1_HUMAN
θ value	2.52405e-10 (rank : 51)	NC score	0.929135 (rank : 41)
Query Neighborhood Hits	349	Target Neighborhood Hits	374	Shared Neighborhood Hits	310
SwissProt Accessions	P28360, Q96NY4	Gene names	MSX1, HOX7
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7).

MSX1_MOUSE
θ value	2.52405e-10 (rank : 52)	NC score	0.930530 (rank : 38)
Query Neighborhood Hits	349	Target Neighborhood Hits	322	Shared Neighborhood Hits	309
SwissProt Accessions	P13297	Gene names	Msx1, Hox7, Hox7.1
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7) (Hox- 7.1).

HLXB9_HUMAN
θ value	3.29651e-10 (rank : 53)	NC score	0.940564 (rank : 10)
Query Neighborhood Hits	349	Target Neighborhood Hits	336	Shared Neighborhood Hits	318
SwissProt Accessions	P50219, Q9Y648	Gene names	HLXB9
Domain Architecture
Description	Homeobox protein HB9.

HLXB9_MOUSE
θ value	3.29651e-10 (rank : 54)	NC score	0.940221 (rank : 12)
Query Neighborhood Hits	349	Target Neighborhood Hits	354	Shared Neighborhood Hits	319
SwissProt Accessions	Q9QZW9	Gene names	Hlxb9
Domain Architecture
Description	Homeobox protein HB9.

HXB4_HUMAN
θ value	3.29651e-10 (rank : 55)	NC score	0.894336 (rank : 119)
Query Neighborhood Hits	349	Target Neighborhood Hits	376	Shared Neighborhood Hits	309
SwissProt Accessions	P17483, Q9NTA0	Gene names	HOXB4, HOX2F
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2F) (Hox-2.6).

HXB4_MOUSE
θ value	3.29651e-10 (rank : 56)	NC score	0.891196 (rank : 124)
Query Neighborhood Hits	349	Target Neighborhood Hits	375	Shared Neighborhood Hits	308
SwissProt Accessions	P10284, Q3UZB4, Q4VBG0	Gene names	Hoxb4, Hox-2.6, Hoxb-4
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2.6).

HXC4_MOUSE
θ value	3.29651e-10 (rank : 57)	NC score	0.897727 (rank : 111)
Query Neighborhood Hits	349	Target Neighborhood Hits	365	Shared Neighborhood Hits	311
SwissProt Accessions	Q08624	Gene names	Hoxc4, Hox-3.5, Hoxc-4
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3.5).

HXD10_HUMAN
θ value	3.29651e-10 (rank : 58)	NC score	0.877056 (rank : 164)
Query Neighborhood Hits	349	Target Neighborhood Hits	392	Shared Neighborhood Hits	314
SwissProt Accessions	P28358	Gene names	HOXD10, HOX4D
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4D) (Hox-4E).

HXD10_MOUSE
θ value	3.29651e-10 (rank : 59)	NC score	0.877082 (rank : 163)
Query Neighborhood Hits	349	Target Neighborhood Hits	392	Shared Neighborhood Hits	314
SwissProt Accessions	P28359, Q91WU9	Gene names	Hoxd10, Hox-4.5, Hoxd-10
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4.5) (Hox-5.3).

HXD3_MOUSE
θ value	3.29651e-10 (rank : 60)	NC score	0.899524 (rank : 109)
Query Neighborhood Hits	349	Target Neighborhood Hits	435	Shared Neighborhood Hits	313
SwissProt Accessions	P09027, Q3UUD3	Gene names	Hoxd3, Hox-4.1, Hoxd-3
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4.1) (Homeobox protein MH-19).

IPF1_MOUSE
θ value	3.29651e-10 (rank : 61)	NC score	0.922745 (rank : 66)
Query Neighborhood Hits	349	Target Neighborhood Hits	340	Shared Neighborhood Hits	306
SwissProt Accessions	P52946	Gene names	Ipf1, Pdx1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Islet/duodenum homeobox 1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Pancreas/duodenum homeobox 1).

NKX22_HUMAN
θ value	3.29651e-10 (rank : 62)	NC score	0.913810 (rank : 79)
Query Neighborhood Hits	349	Target Neighborhood Hits	342	Shared Neighborhood Hits	317
SwissProt Accessions	O95096	Gene names	NKX2-2, NKX2.2, NKX2B
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

NKX22_MOUSE
θ value	3.29651e-10 (rank : 63)	NC score	0.913443 (rank : 82)
Query Neighborhood Hits	349	Target Neighborhood Hits	336	Shared Neighborhood Hits	319
SwissProt Accessions	P42586	Gene names	Nkx2-2, Nkx-2.2, Nkx2b
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

IPF1_HUMAN
θ value	4.30538e-10 (rank : 64)	NC score	0.923090 (rank : 65)
Query Neighborhood Hits	349	Target Neighborhood Hits	330	Shared Neighborhood Hits	305
SwissProt Accessions	P52945, O60594	Gene names	IPF1, PDX1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Pancreas/duodenum homeobox 1) (PDX- 1) (Islet/duodenum homeobox-1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Insulin upstream factor 1) (IUF-1) (Glucose- sensitive factor) (GSF).

HXA4_HUMAN
θ value	5.62301e-10 (rank : 65)	NC score	0.896461 (rank : 114)
Query Neighborhood Hits	349	Target Neighborhood Hits	370	Shared Neighborhood Hits	303
SwissProt Accessions	Q00056, O43366	Gene names	HOXA4, HOX1D
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4).

DLX4_HUMAN
θ value	7.34386e-10 (rank : 66)	NC score	0.924240 (rank : 57)
Query Neighborhood Hits	349	Target Neighborhood Hits	350	Shared Neighborhood Hits	318
SwissProt Accessions	Q92988, O60480, Q13265, Q6PJK0, Q9HBE0	Gene names	DLX4, BP1, DLX7, DLX8
Domain Architecture	No domain graphic available
Description	Homeobox protein DLX-4 (DLX-7) (DLX-8) (Beta protein 1).

DLX5_HUMAN
θ value	7.34386e-10 (rank : 67)	NC score	0.911234 (rank : 86)
Query Neighborhood Hits	349	Target Neighborhood Hits	405	Shared Neighborhood Hits	326
SwissProt Accessions	P56178, Q9UPL1	Gene names	DLX5
Domain Architecture
Description	Homeobox protein DLX-5.

DLX5_MOUSE
θ value	7.34386e-10 (rank : 68)	NC score	0.907517 (rank : 94)
Query Neighborhood Hits	349	Target Neighborhood Hits	434	Shared Neighborhood Hits	326
SwissProt Accessions	P70396, O54876, O54877, O54878, Q9JJ45	Gene names	Dlx5
Domain Architecture
Description	Homeobox protein DLX-5.

HXA10_HUMAN
θ value	7.34386e-10 (rank : 69)	NC score	0.877452 (rank : 162)
Query Neighborhood Hits	349	Target Neighborhood Hits	334	Shared Neighborhood Hits	298
SwissProt Accessions	P31260, O43370, O43605, Q15949	Gene names	HOXA10, HOX1H
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL).

HXA10_MOUSE
θ value	7.34386e-10 (rank : 70)	NC score	0.876080 (rank : 167)
Query Neighborhood Hits	349	Target Neighborhood Hits	365	Shared Neighborhood Hits	301
SwissProt Accessions	P31310, Q80Y22	Gene names	Hoxa10, Hox-1.8, Hoxa-10
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1.8).

HXD3_HUMAN
θ value	7.34386e-10 (rank : 71)	NC score	0.897464 (rank : 113)
Query Neighborhood Hits	349	Target Neighborhood Hits	433	Shared Neighborhood Hits	310
SwissProt Accessions	P31249, Q99955, Q9BSC5	Gene names	HOXD3, HOX4A
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4A).

HXA4_MOUSE
θ value	9.59137e-10 (rank : 72)	NC score	0.895972 (rank : 115)
Query Neighborhood Hits	349	Target Neighborhood Hits	379	Shared Neighborhood Hits	306
SwissProt Accessions	P06798, Q61684, Q64388, Q8BPE6	Gene names	Hoxa4, Hox-1.4, Hoxa-4
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1.4) (Homeobox protein MH-3).

NKX61_MOUSE
θ value	9.59137e-10 (rank : 73)	NC score	0.926081 (rank : 52)
Query Neighborhood Hits	349	Target Neighborhood Hits	439	Shared Neighborhood Hits	317
SwissProt Accessions	Q99MA9, Q9ERQ7	Gene names	Nkx6-1, Nkx6.1, Nkx6a
Domain Architecture
Description	Homeobox protein Nkx-6.1.

SHOX_HUMAN
θ value	9.59137e-10 (rank : 74)	NC score	0.879014 (rank : 155)
Query Neighborhood Hits	349	Target Neighborhood Hits	363	Shared Neighborhood Hits	324
SwissProt Accessions	O15266, O00412, O00413, O15267	Gene names	SHOX, PHOG
Domain Architecture
Description	Short stature homeobox protein (Short stature homeobox-containing protein) (Pseudoautosomal homeobox-containing osteogenic protein).

DLX2_HUMAN
θ value	1.25267e-09 (rank : 75)	NC score	0.923618 (rank : 60)
Query Neighborhood Hits	349	Target Neighborhood Hits	355	Shared Neighborhood Hits	326
SwissProt Accessions	Q07687	Gene names	DLX2
Domain Architecture
Description	Homeobox protein DLX-2.

DLX2_MOUSE
θ value	1.25267e-09 (rank : 76)	NC score	0.923232 (rank : 63)
Query Neighborhood Hits	349	Target Neighborhood Hits	352	Shared Neighborhood Hits	324
SwissProt Accessions	P40764	Gene names	Dlx2, Tes-1, Tes1
Domain Architecture
Description	Homeobox protein DLX-2 (Homeobox protein TES-1).

HXC4_HUMAN
θ value	1.25267e-09 (rank : 77)	NC score	0.893341 (rank : 120)
Query Neighborhood Hits	349	Target Neighborhood Hits	361	Shared Neighborhood Hits	311
SwissProt Accessions	P09017	Gene names	HOXC4, HOX3E
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3E) (CP19).

NKX61_HUMAN
θ value	1.25267e-09 (rank : 78)	NC score	0.926436 (rank : 51)
Query Neighborhood Hits	349	Target Neighborhood Hits	431	Shared Neighborhood Hits	317
SwissProt Accessions	P78426	Gene names	NKX6-1, NKX6A
Domain Architecture
Description	Homeobox protein Nkx-6.1.

EMX2_HUMAN
θ value	1.63604e-09 (rank : 79)	NC score	0.932004 (rank : 30)
Query Neighborhood Hits	349	Target Neighborhood Hits	341	Shared Neighborhood Hits	321
SwissProt Accessions	Q04743, Q96NN8, Q9BQF4	Gene names	EMX2
Domain Architecture
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

EMX2_MOUSE
θ value	1.63604e-09 (rank : 80)	NC score	0.931955 (rank : 31)
Query Neighborhood Hits	349	Target Neighborhood Hits	340	Shared Neighborhood Hits	321
SwissProt Accessions	Q04744, Q80UE7	Gene names	Emx2, Emx-2
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

HMX3_MOUSE
θ value	1.63604e-09 (rank : 81)	NC score	0.937204 (rank : 18)
Query Neighborhood Hits	349	Target Neighborhood Hits	342	Shared Neighborhood Hits	317
SwissProt Accessions	P42581	Gene names	Hmx3, Nkx-5.1, Nkx5-1
Domain Architecture
Description	Homeobox protein HMX3 (Homeobox protein Nkx-5.1).

MEOX2_HUMAN
θ value	1.63604e-09 (rank : 82)	NC score	0.927896 (rank : 45)
Query Neighborhood Hits	349	Target Neighborhood Hits	340	Shared Neighborhood Hits	316
SwissProt Accessions	P50222, O75263, Q9UPL6	Gene names	MEOX2, GAX, MOX2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth arrest-specific homeobox).

MEOX2_MOUSE
θ value	1.63604e-09 (rank : 83)	NC score	0.927994 (rank : 44)
Query Neighborhood Hits	349	Target Neighborhood Hits	341	Shared Neighborhood Hits	316
SwissProt Accessions	P32443, Q544T6	Gene names	Meox2, Gax, Mox-2, Mox2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2).

RX_HUMAN
θ value	1.63604e-09 (rank : 84)	NC score	0.891176 (rank : 125)
Query Neighborhood Hits	349	Target Neighborhood Hits	423	Shared Neighborhood Hits	322
SwissProt Accessions	Q9Y2V3	Gene names	RAX, RX
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

HXA2_HUMAN
θ value	2.13673e-09 (rank : 85)	NC score	0.905938 (rank : 95)
Query Neighborhood Hits	349	Target Neighborhood Hits	370	Shared Neighborhood Hits	307
SwissProt Accessions	O43364	Gene names	HOXA2
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A2.

HXA2_MOUSE
θ value	2.13673e-09 (rank : 86)	NC score	0.908807 (rank : 91)
Query Neighborhood Hits	349	Target Neighborhood Hits	338	Shared Neighborhood Hits	307
SwissProt Accessions	P31245, Q149U3, Q920T8	Gene names	Hoxa2, Hox-1.11, Hoxa-2
Domain Architecture
Description	Homeobox protein Hox-A2 (Hox-1.11) (Hox1.11).

HXA9_HUMAN
θ value	2.13673e-09 (rank : 87)	NC score	0.882020 (rank : 151)
Query Neighborhood Hits	349	Target Neighborhood Hits	332	Shared Neighborhood Hits	310
SwissProt Accessions	P31269, O43369, O43429, Q99820	Gene names	HOXA9, HOX1G
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1G).

HXA9_MOUSE
θ value	2.13673e-09 (rank : 88)	NC score	0.882917 (rank : 146)
Query Neighborhood Hits	349	Target Neighborhood Hits	334	Shared Neighborhood Hits	310
SwissProt Accessions	P09631, O70154, O70155	Gene names	Hoxa9, Hox-1.7, Hoxa-9
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1.7).

HXB2_HUMAN
θ value	2.13673e-09 (rank : 89)	NC score	0.905392 (rank : 96)
Query Neighborhood Hits	349	Target Neighborhood Hits	367	Shared Neighborhood Hits	306
SwissProt Accessions	P14652, P10913, P17485	Gene names	HOXB2, HOX2H
Domain Architecture
Description	Homeobox protein Hox-B2 (Hox-2H) (Hox-2.8) (K8).

MEOX1_MOUSE
θ value	2.13673e-09 (rank : 90)	NC score	0.925112 (rank : 55)
Query Neighborhood Hits	349	Target Neighborhood Hits	345	Shared Neighborhood Hits	314
SwissProt Accessions	P32442	Gene names	Meox1, Mox-1, Mox1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

ESX1L_HUMAN
θ value	2.79066e-09 (rank : 91)	NC score	0.895645 (rank : 117)
Query Neighborhood Hits	349	Target Neighborhood Hits	498	Shared Neighborhood Hits	319
SwissProt Accessions	Q8N693, Q7Z6K7	Gene names	ESX1L, ESX1R
Domain Architecture
Description	Extraembryonic, spermatogenesis, homeobox 1-like protein.

HXD11_MOUSE
θ value	2.79066e-09 (rank : 92)	NC score	0.895958 (rank : 116)
Query Neighborhood Hits	349	Target Neighborhood Hits	376	Shared Neighborhood Hits	313
SwissProt Accessions	P23813	Gene names	Hoxd11, Hox-4.6, Hoxd-11
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5).

CDX1_MOUSE
θ value	3.64472e-09 (rank : 93)	NC score	0.914645 (rank : 78)
Query Neighborhood Hits	349	Target Neighborhood Hits	379	Shared Neighborhood Hits	306
SwissProt Accessions	P18111, Q8VCF7	Gene names	Cdx1, Cdx-1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

EMX1_HUMAN
θ value	3.64472e-09 (rank : 94)	NC score	0.935299 (rank : 23)
Query Neighborhood Hits	349	Target Neighborhood Hits	336	Shared Neighborhood Hits	317
SwissProt Accessions	Q04741, Q86XB0	Gene names	EMX1
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty spiracles- like protein 1).

HXC9_HUMAN
θ value	3.64472e-09 (rank : 95)	NC score	0.863280 (rank : 197)
Query Neighborhood Hits	349	Target Neighborhood Hits	339	Shared Neighborhood Hits	308
SwissProt Accessions	P31274, Q9H1I0	Gene names	HOXC9, HOX3B
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3B).

HXC9_MOUSE
θ value	3.64472e-09 (rank : 96)	NC score	0.863439 (rank : 196)
Query Neighborhood Hits	349	Target Neighborhood Hits	338	Shared Neighborhood Hits	308
SwissProt Accessions	P09633	Gene names	Hoxc9, Hox-3.2, Hoxc-9
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3.2).

PHX2B_HUMAN
θ value	3.64472e-09 (rank : 97)	NC score	0.867519 (rank : 189)
Query Neighborhood Hits	349	Target Neighborhood Hits	407	Shared Neighborhood Hits	313
SwissProt Accessions	Q99453, Q6PJD9	Gene names	PHOX2B, PMX2B
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

PHX2B_MOUSE
θ value	3.64472e-09 (rank : 98)	NC score	0.867519 (rank : 190)
Query Neighborhood Hits	349	Target Neighborhood Hits	407	Shared Neighborhood Hits	313
SwissProt Accessions	O35690	Gene names	Phox2b, Pmx2b
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

SHOX2_HUMAN
θ value	3.64472e-09 (rank : 99)	NC score	0.876584 (rank : 166)
Query Neighborhood Hits	349	Target Neighborhood Hits	353	Shared Neighborhood Hits	320
SwissProt Accessions	O60902, O60465, O60467, O60903	Gene names	SHOX2, OG12X, SHOT
Domain Architecture
Description	Short stature homeobox protein 2 (Paired-related homeobox protein SHOT) (Homeobox protein Og12X).

HXA3_HUMAN
θ value	4.76016e-09 (rank : 100)	NC score	0.892740 (rank : 121)
Query Neighborhood Hits	349	Target Neighborhood Hits	535	Shared Neighborhood Hits	318
SwissProt Accessions	O43365	Gene names	HOXA3, HOX1E
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1E).

SHOX2_MOUSE
θ value	4.76016e-09 (rank : 101)	NC score	0.876918 (rank : 165)
Query Neighborhood Hits	349	Target Neighborhood Hits	348	Shared Neighborhood Hits	320
SwissProt Accessions	P70390, P70369	Gene names	Shox2, Og12x, Prx3
Domain Architecture
Description	Short stature homeobox protein 2 (Homeobox protein Og12X) (OG-12) (Paired family homeodomain protein Prx3).

HXD4_HUMAN
θ value	6.21693e-09 (rank : 102)	NC score	0.890867 (rank : 127)
Query Neighborhood Hits	349	Target Neighborhood Hits	337	Shared Neighborhood Hits	297
SwissProt Accessions	P09016, Q96AU0	Gene names	HOXD4, HOX4B
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4B) (Hox-5.1) (HHO.C13).

HXD4_MOUSE
θ value	6.21693e-09 (rank : 103)	NC score	0.888828 (rank : 131)
Query Neighborhood Hits	349	Target Neighborhood Hits	339	Shared Neighborhood Hits	296
SwissProt Accessions	P10628, P97451, Q3UXL6	Gene names	Hoxd4, Hox-4.2, Hoxd-4
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4.2) (Hox-5.1).

NKX26_MOUSE
θ value	6.21693e-09 (rank : 104)	NC score	0.925432 (rank : 54)
Query Neighborhood Hits	349	Target Neighborhood Hits	343	Shared Neighborhood Hits	312
SwissProt Accessions	P43688	Gene names	Nkx2-6, Nkx-2.6, Nkx2f
Domain Architecture
Description	Homeobox protein Nkx-2.6 (Homeobox protein NK-2 homolog F).

DLX1_HUMAN
θ value	8.11959e-09 (rank : 105)	NC score	0.923633 (rank : 59)
Query Neighborhood Hits	349	Target Neighborhood Hits	343	Shared Neighborhood Hits	325
SwissProt Accessions	P56177, Q53ZU4, Q8IYB2	Gene names	DLX1
Domain Architecture
Description	Homeobox protein DLX-1.

DLX1_MOUSE
θ value	8.11959e-09 (rank : 106)	NC score	0.923324 (rank : 62)
Query Neighborhood Hits	349	Target Neighborhood Hits	343	Shared Neighborhood Hits	325
SwissProt Accessions	Q64317	Gene names	Dlx1
Domain Architecture
Description	Homeobox protein DLX-1.

HXB8_HUMAN
θ value	8.11959e-09 (rank : 107)	NC score	0.872391 (rank : 182)
Query Neighborhood Hits	349	Target Neighborhood Hits	324	Shared Neighborhood Hits	311
SwissProt Accessions	P17481, Q9H1I2	Gene names	HOXB8, HOX2D
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4).

HXB8_MOUSE
θ value	8.11959e-09 (rank : 108)	NC score	0.872701 (rank : 180)
Query Neighborhood Hits	349	Target Neighborhood Hits	325	Shared Neighborhood Hits	312
SwissProt Accessions	P09632	Gene names	Hoxb8, Hox-2.4, Hoxb-8
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2.4).

HXD11_HUMAN
θ value	8.11959e-09 (rank : 109)	NC score	0.897659 (rank : 112)
Query Neighborhood Hits	349	Target Neighborhood Hits	353	Shared Neighborhood Hits	314
SwissProt Accessions	P31277, Q9NS02	Gene names	HOXD11, HOX4F
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4F).

OTP_MOUSE
θ value	8.11959e-09 (rank : 110)	NC score	0.886537 (rank : 137)
Query Neighborhood Hits	349	Target Neighborhood Hits	387	Shared Neighborhood Hits	323
SwissProt Accessions	O09113	Gene names	Otp
Domain Architecture
Description	Homeobox protein orthopedia.

CDX1_HUMAN
θ value	1.06045e-08 (rank : 111)	NC score	0.913685 (rank : 80)
Query Neighborhood Hits	349	Target Neighborhood Hits	382	Shared Neighborhood Hits	308
SwissProt Accessions	P47902, Q4VAU4, Q9NYK8	Gene names	CDX1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

HXA3_MOUSE
θ value	1.06045e-08 (rank : 112)	NC score	0.892202 (rank : 122)
Query Neighborhood Hits	349	Target Neighborhood Hits	558	Shared Neighborhood Hits	320
SwissProt Accessions	P02831, Q4V9Z8, Q61197	Gene names	Hoxa3, Hox-1.5, Hoxa-3
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1.5) (MO-10).

HXB6_HUMAN
θ value	1.06045e-08 (rank : 113)	NC score	0.874049 (rank : 175)
Query Neighborhood Hits	349	Target Neighborhood Hits	307	Shared Neighborhood Hits	294
SwissProt Accessions	P17509, P09068, Q9HB11, Q9UGH2	Gene names	HOXB6, HOX2B
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2).

HXB6_MOUSE
θ value	1.06045e-08 (rank : 114)	NC score	0.874492 (rank : 173)
Query Neighborhood Hits	349	Target Neighborhood Hits	309	Shared Neighborhood Hits	294
SwissProt Accessions	P09023	Gene names	Hoxb6, Hox-2.2, Hoxb-6
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2.2) (Homeobox protein MH-22A).

HXD9_HUMAN
θ value	1.06045e-08 (rank : 115)	NC score	0.876022 (rank : 168)
Query Neighborhood Hits	349	Target Neighborhood Hits	352	Shared Neighborhood Hits	310
SwissProt Accessions	P28356	Gene names	HOXD9, HOX4C
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2).

HXD9_MOUSE
θ value	1.06045e-08 (rank : 116)	NC score	0.872438 (rank : 181)
Query Neighborhood Hits	349	Target Neighborhood Hits	359	Shared Neighborhood Hits	310
SwissProt Accessions	P28357, Q3UYS2	Gene names	Hoxd9, Hox-4.4, Hoxd-9
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4.4) (Hox-5.2).

PITX2_MOUSE
θ value	1.06045e-08 (rank : 117)	NC score	0.879452 (rank : 154)
Query Neighborhood Hits	349	Target Neighborhood Hits	383	Shared Neighborhood Hits	332
SwissProt Accessions	P97474, O08646, O70336, P97933, Q9JLA0, Q9QXB8, Q9R1V9, Q9Z141	Gene names	Pitx2, Arp1, Brx1, Otlx2, Ptx2, Rgs
Domain Architecture
Description	Pituitary homeobox 2 (Orthodenticle-like homeobox 2) (Solurshin) (ALL1-responsive protein ARP1) (BRX1 homeoprotein) (Paired-like homeodomain transcription factor Munc 30).

RX_MOUSE
θ value	1.06045e-08 (rank : 118)	NC score	0.889858 (rank : 128)
Query Neighborhood Hits	349	Target Neighborhood Hits	429	Shared Neighborhood Hits	323
SwissProt Accessions	O35602, O08748	Gene names	Rax, Rx
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

HXB3_HUMAN
θ value	1.80886e-08 (rank : 119)	NC score	0.878012 (rank : 159)
Query Neighborhood Hits	349	Target Neighborhood Hits	559	Shared Neighborhood Hits	312
SwissProt Accessions	P14651, O95615, P17484	Gene names	HOXB3, HOX2G
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7).

HXB3_MOUSE
θ value	1.80886e-08 (rank : 120)	NC score	0.885599 (rank : 140)
Query Neighborhood Hits	349	Target Neighborhood Hits	493	Shared Neighborhood Hits	309
SwissProt Accessions	P09026, P10285, Q4PJ06, Q61680	Gene names	Hoxb3, Hox-2.7, Hoxb-3
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2.7) (Homeobox protein MH-23).

HXB9_HUMAN
θ value	1.80886e-08 (rank : 121)	NC score	0.866787 (rank : 192)
Query Neighborhood Hits	349	Target Neighborhood Hits	344	Shared Neighborhood Hits	307
SwissProt Accessions	P17482, Q9H1I1	Gene names	HOXB9, HOX2E
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5).

HXB9_MOUSE
θ value	1.80886e-08 (rank : 122)	NC score	0.865678 (rank : 194)
Query Neighborhood Hits	349	Target Neighborhood Hits	344	Shared Neighborhood Hits	306
SwissProt Accessions	P20615	Gene names	Hoxb9, Hox-2.5, Hoxb-9
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2.5).

HXC8_HUMAN
θ value	1.80886e-08 (rank : 123)	NC score	0.872810 (rank : 179)
Query Neighborhood Hits	349	Target Neighborhood Hits	327	Shared Neighborhood Hits	309
SwissProt Accessions	P31273, O15221, O15362	Gene names	HOXC8, HOX3A
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3A).

HXC8_MOUSE
θ value	1.80886e-08 (rank : 124)	NC score	0.872856 (rank : 178)
Query Neighborhood Hits	349	Target Neighborhood Hits	327	Shared Neighborhood Hits	309
SwissProt Accessions	P09025	Gene names	Hoxc8, Hox-3.1, Hoxc-8
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3.1) (M31).

PITX3_HUMAN
θ value	1.80886e-08 (rank : 125)	NC score	0.887401 (rank : 135)
Query Neighborhood Hits	349	Target Neighborhood Hits	366	Shared Neighborhood Hits	329
SwissProt Accessions	O75364	Gene names	PITX3, PTX3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

ALX4_HUMAN
θ value	2.36244e-08 (rank : 126)	NC score	0.867468 (rank : 191)
Query Neighborhood Hits	349	Target Neighborhood Hits	394	Shared Neighborhood Hits	328
SwissProt Accessions	Q9H161, Q96JN7, Q9H198, Q9HAY9	Gene names	ALX4, KIAA1788
Domain Architecture
Description	Homeobox protein aristaless-like 4.

ALX4_MOUSE
θ value	2.36244e-08 (rank : 127)	NC score	0.869165 (rank : 184)
Query Neighborhood Hits	349	Target Neighborhood Hits	369	Shared Neighborhood Hits	331
SwissProt Accessions	O35137	Gene names	Alx4
Domain Architecture
Description	Homeobox protein aristaless-like 4 (ALX-4).

ARX_HUMAN
θ value	2.36244e-08 (rank : 128)	NC score	0.891351 (rank : 123)
Query Neighborhood Hits	349	Target Neighborhood Hits	401	Shared Neighborhood Hits	324
SwissProt Accessions	Q96QS3	Gene names	ARX
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

ARX_MOUSE
θ value	2.36244e-08 (rank : 129)	NC score	0.889768 (rank : 129)
Query Neighborhood Hits	349	Target Neighborhood Hits	398	Shared Neighborhood Hits	324
SwissProt Accessions	O35085, Q9QYT4	Gene names	Arx
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

HXA5_HUMAN
θ value	2.36244e-08 (rank : 130)	NC score	0.882507 (rank : 149)
Query Neighborhood Hits	349	Target Neighborhood Hits	336	Shared Neighborhood Hits	300
SwissProt Accessions	P20719, O43367, Q96CY6	Gene names	HOXA5, HOX1C
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1C).

HXA5_MOUSE
θ value	2.36244e-08 (rank : 131)	NC score	0.882761 (rank : 147)
Query Neighborhood Hits	349	Target Neighborhood Hits	338	Shared Neighborhood Hits	300
SwissProt Accessions	P09021, Q91VQ5	Gene names	Hoxa5, Hox-1.3, Hoxa-5
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1.3) (M2).

HXB5_HUMAN
θ value	2.36244e-08 (rank : 132)	NC score	0.882545 (rank : 148)
Query Neighborhood Hits	349	Target Neighborhood Hits	332	Shared Neighborhood Hits	298
SwissProt Accessions	P09067, P09069	Gene names	HOXB5, HOX2A
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2A) (HHO.C10) (HU-1).

HXB5_MOUSE
θ value	2.36244e-08 (rank : 133)	NC score	0.881656 (rank : 152)
Query Neighborhood Hits	349	Target Neighborhood Hits	337	Shared Neighborhood Hits	298
SwissProt Accessions	P09079, Q3ZAY8	Gene names	Hoxb5, Hox-2.1, Hoxb-5
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2.1) (MU-1) (H24.1).

HXB7_HUMAN
θ value	2.36244e-08 (rank : 134)	NC score	0.885912 (rank : 138)
Query Neighborhood Hits	349	Target Neighborhood Hits	311	Shared Neighborhood Hits	301
SwissProt Accessions	P09629, Q15957	Gene names	HOXB7, HOX2C
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2C) (HHO.C1).

HXB7_MOUSE
θ value	2.36244e-08 (rank : 135)	NC score	0.885664 (rank : 139)
Query Neighborhood Hits	349	Target Neighborhood Hits	314	Shared Neighborhood Hits	301
SwissProt Accessions	P09024, Q3UW15	Gene names	Hoxb7, Hox-2.3, Hoxb-7
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2.3) (MUB1) (Homeobox protein MH-22B).

HXC5_HUMAN
θ value	2.36244e-08 (rank : 136)	NC score	0.884770 (rank : 143)
Query Neighborhood Hits	349	Target Neighborhood Hits	316	Shared Neighborhood Hits	298
SwissProt Accessions	Q00444	Gene names	HOXC5, HOX3D
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3D) (CP11).

HXC5_MOUSE
θ value	2.36244e-08 (rank : 137)	NC score	0.884265 (rank : 144)
Query Neighborhood Hits	349	Target Neighborhood Hits	316	Shared Neighborhood Hits	298
SwissProt Accessions	P32043, Q8BJW4	Gene names	Hoxc5, Hox-3.4, Hoxc-5
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3.4) (Hox-6.2).

NKX12_MOUSE
θ value	2.36244e-08 (rank : 138)	NC score	0.939312 (rank : 14)
Query Neighborhood Hits	349	Target Neighborhood Hits	332	Shared Neighborhood Hits	304
SwissProt Accessions	P42580, Q9JHF2, Q9JKW5, Q9JKW6, Q9JKW9, Q9JKX0, Q9JKX1	Gene names	Nkx1-2, Nkx1.1, Sax1
Domain Architecture
Description	NK1 transcription factor-related protein 2 (Homeobox protein SAX-1) (NKX-1.1).

PRRX1_HUMAN
θ value	2.36244e-08 (rank : 139)	NC score	0.851681 (rank : 209)
Query Neighborhood Hits	349	Target Neighborhood Hits	347	Shared Neighborhood Hits	322
SwissProt Accessions	P54821, O60807	Gene names	PRRX1, PMX1
Domain Architecture
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein PHOX1).

PRRX1_MOUSE
θ value	2.36244e-08 (rank : 140)	NC score	0.851646 (rank : 210)
Query Neighborhood Hits	349	Target Neighborhood Hits	346	Shared Neighborhood Hits	320
SwissProt Accessions	P63013, P43271, Q02810	Gene names	Prrx1, Pmx, Pmx1
Domain Architecture	No domain graphic available
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein mHox) (Homeobox protein K-2).

VAX1_HUMAN
θ value	2.36244e-08 (rank : 141)	NC score	0.921061 (rank : 69)
Query Neighborhood Hits	349	Target Neighborhood Hits	355	Shared Neighborhood Hits	320
SwissProt Accessions	Q5SQQ9, Q6ZSX0	Gene names	VAX1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

VAX1_MOUSE
θ value	2.36244e-08 (rank : 142)	NC score	0.921184 (rank : 68)
Query Neighborhood Hits	349	Target Neighborhood Hits	351	Shared Neighborhood Hits	320
SwissProt Accessions	Q2NKI2, O88880	Gene names	Vax1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

VAX2_HUMAN
θ value	2.36244e-08 (rank : 143)	NC score	0.923506 (rank : 61)
Query Neighborhood Hits	349	Target Neighborhood Hits	337	Shared Neighborhood Hits	317
SwissProt Accessions	Q9UIW0	Gene names	VAX2
Domain Architecture
Description	Ventral anterior homeobox 2.

VAX2_MOUSE
θ value	2.36244e-08 (rank : 144)	NC score	0.922461 (rank : 67)
Query Neighborhood Hits	349	Target Neighborhood Hits	338	Shared Neighborhood Hits	317
SwissProt Accessions	Q9WTP9	Gene names	Vax2, Vex
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 2 (Ventral retina homeodomain protein).

CDX2_HUMAN
θ value	3.08544e-08 (rank : 145)	NC score	0.907754 (rank : 93)
Query Neighborhood Hits	349	Target Neighborhood Hits	330	Shared Neighborhood Hits	306
SwissProt Accessions	Q99626, O00503, Q969L8	Gene names	CDX2, CDX3
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2) (CDX-3).

DLX6_HUMAN
θ value	3.08544e-08 (rank : 146)	NC score	0.927106 (rank : 49)
Query Neighborhood Hits	349	Target Neighborhood Hits	341	Shared Neighborhood Hits	329
SwissProt Accessions	P56179, Q3ZAR6, Q9UPL2	Gene names	DLX6
Domain Architecture
Description	Homeobox protein DLX-6.

PAX3_HUMAN
θ value	3.08544e-08 (rank : 147)	NC score	0.763526 (rank : 232)
Query Neighborhood Hits	349	Target Neighborhood Hits	513	Shared Neighborhood Hits	332
SwissProt Accessions	P23760, Q16448	Gene names	PAX3, HUP2
Domain Architecture
Description	Paired box protein Pax-3 (HUP2).

PAX3_MOUSE
θ value	3.08544e-08 (rank : 148)	NC score	0.764559 (rank : 231)
Query Neighborhood Hits	349	Target Neighborhood Hits	478	Shared Neighborhood Hits	332
SwissProt Accessions	P24610, Q3UFQ9, Q8BRE7, Q9CXI6	Gene names	Pax3, Pax-3
Domain Architecture
Description	Paired box protein Pax-3.

PITX3_MOUSE
θ value	3.08544e-08 (rank : 149)	NC score	0.887681 (rank : 134)
Query Neighborhood Hits	349	Target Neighborhood Hits	380	Shared Neighborhood Hits	329
SwissProt Accessions	O35160	Gene names	Pitx3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

CDX2_MOUSE
θ value	4.0297e-08 (rank : 150)	NC score	0.910349 (rank : 88)
Query Neighborhood Hits	349	Target Neighborhood Hits	336	Shared Neighborhood Hits	310
SwissProt Accessions	P43241	Gene names	Cdx2, Cdx-2
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2).

HXA7_MOUSE
θ value	4.0297e-08 (rank : 151)	NC score	0.886611 (rank : 136)
Query Neighborhood Hits	349	Target Neighborhood Hits	318	Shared Neighborhood Hits	303
SwissProt Accessions	P02830, Q544P0	Gene names	Hoxa7, Hox-1.1, Hoxa-7
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1.1) (M6-12) (M6).

HXB1_HUMAN
θ value	4.0297e-08 (rank : 152)	NC score	0.910972 (rank : 87)
Query Neighborhood Hits	349	Target Neighborhood Hits	356	Shared Neighborhood Hits	314
SwissProt Accessions	P14653	Gene names	HOXB1, HOX2I
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2I).

HXB1_MOUSE
θ value	4.0297e-08 (rank : 153)	NC score	0.912422 (rank : 85)
Query Neighborhood Hits	349	Target Neighborhood Hits	341	Shared Neighborhood Hits	316
SwissProt Accessions	P17919, Q3ZAY6, Q9CYH3	Gene names	Hoxb1, Hox-2.9, Hoxb-1
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2.9).

HXD12_MOUSE
θ value	4.0297e-08 (rank : 154)	NC score	0.895473 (rank : 118)
Query Neighborhood Hits	349	Target Neighborhood Hits	370	Shared Neighborhood Hits	316
SwissProt Accessions	P23812	Gene names	Hoxd12, Hox-4.7, Hoxd-12
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4.7) (Hox-5.6).

HME1_HUMAN
θ value	5.26297e-08 (rank : 155)	NC score	0.904462 (rank : 97)
Query Neighborhood Hits	349	Target Neighborhood Hits	384	Shared Neighborhood Hits	316
SwissProt Accessions	Q05925	Gene names	EN1
Domain Architecture
Description	Homeobox protein engrailed-1 (Hu-En-1).

HME1_MOUSE
θ value	5.26297e-08 (rank : 156)	NC score	0.904428 (rank : 98)
Query Neighborhood Hits	349	Target Neighborhood Hits	397	Shared Neighborhood Hits	316
SwissProt Accessions	P09065	Gene names	En1, En-1
Domain Architecture
Description	Homeobox protein engrailed-1 (Mo-En-1).

HME2_HUMAN
θ value	5.26297e-08 (rank : 157)	NC score	0.909656 (rank : 89)
Query Neighborhood Hits	349	Target Neighborhood Hits	355	Shared Neighborhood Hits	323
SwissProt Accessions	P19622	Gene names	EN2
Domain Architecture
Description	Homeobox protein engrailed-2 (Hu-En-2).

HME2_MOUSE
θ value	5.26297e-08 (rank : 158)	NC score	0.908310 (rank : 92)
Query Neighborhood Hits	349	Target Neighborhood Hits	352	Shared Neighborhood Hits	323
SwissProt Accessions	P09066	Gene names	En2, En-2
Domain Architecture
Description	Homeobox protein engrailed-2 (Mo-En-2).

HXA11_HUMAN
θ value	5.26297e-08 (rank : 159)	NC score	0.888777 (rank : 132)
Query Neighborhood Hits	349	Target Neighborhood Hits	334	Shared Neighborhood Hits	306
SwissProt Accessions	P31270	Gene names	HOXA11, HOX1I
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1I).

HXA11_MOUSE
θ value	5.26297e-08 (rank : 160)	NC score	0.885001 (rank : 142)
Query Neighborhood Hits	349	Target Neighborhood Hits	327	Shared Neighborhood Hits	306
SwissProt Accessions	P31311, Q3V026	Gene names	Hoxa11, Hox-1.9, Hoxa-11
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1.9).

PRRX2_MOUSE
θ value	5.26297e-08 (rank : 161)	NC score	0.858506 (rank : 199)
Query Neighborhood Hits	349	Target Neighborhood Hits	351	Shared Neighborhood Hits	322
SwissProt Accessions	Q06348, Q61651	Gene names	Prrx2, Prx2, S8
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Homeobox protein S8).

CDX4_HUMAN
θ value	6.87365e-08 (rank : 162)	NC score	0.909539 (rank : 90)
Query Neighborhood Hits	349	Target Neighborhood Hits	366	Shared Neighborhood Hits	324
SwissProt Accessions	O14627, Q5JS20	Gene names	CDX4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

DBX1_MOUSE
θ value	6.87365e-08 (rank : 163)	NC score	0.932118 (rank : 29)
Query Neighborhood Hits	349	Target Neighborhood Hits	346	Shared Neighborhood Hits	320
SwissProt Accessions	P52950	Gene names	Dbx1, Dbx
Domain Architecture
Description	Homeobox protein DBX1.

GSHI_HUMAN
θ value	6.87365e-08 (rank : 164)	NC score	0.915876 (rank : 73)
Query Neighborhood Hits	349	Target Neighborhood Hits	314	Shared Neighborhood Hits	304
SwissProt Accessions	Q9H4S2	Gene names	GSH1
Domain Architecture
Description	Homeobox protein GSH-1.

GSHI_MOUSE
θ value	6.87365e-08 (rank : 165)	NC score	0.915765 (rank : 75)
Query Neighborhood Hits	349	Target Neighborhood Hits	313	Shared Neighborhood Hits	302
SwissProt Accessions	P31315	Gene names	Gsh1, Gsh-1
Domain Architecture
Description	Homeobox protein GSH-1.

HXA1_HUMAN
θ value	6.87365e-08 (rank : 166)	NC score	0.901415 (rank : 105)
Query Neighborhood Hits	349	Target Neighborhood Hits	334	Shared Neighborhood Hits	311
SwissProt Accessions	P49639, O43363	Gene names	HOXA1, HOX1F
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1F).

HXA1_MOUSE
θ value	6.87365e-08 (rank : 167)	NC score	0.902304 (rank : 103)
Query Neighborhood Hits	349	Target Neighborhood Hits	341	Shared Neighborhood Hits	313
SwissProt Accessions	P09022, P15463	Gene names	Hoxa1, Era-1, Hox-1.6, Hoxa-1
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399).

HXA7_HUMAN
θ value	6.87365e-08 (rank : 168)	NC score	0.885112 (rank : 141)
Query Neighborhood Hits	349	Target Neighborhood Hits	309	Shared Neighborhood Hits	299
SwissProt Accessions	P31268, O43368, O43486, O95655, Q9NSC8, Q9UDM1	Gene names	HOXA7, HOX1A
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1).

HXD8_HUMAN
θ value	6.87365e-08 (rank : 169)	NC score	0.868958 (rank : 186)
Query Neighborhood Hits	349	Target Neighborhood Hits	338	Shared Neighborhood Hits	310
SwissProt Accessions	P13378	Gene names	HOXD8, HOX4E
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4).

ALX3_MOUSE
θ value	8.97725e-08 (rank : 170)	NC score	0.853893 (rank : 205)
Query Neighborhood Hits	349	Target Neighborhood Hits	386	Shared Neighborhood Hits	329
SwissProt Accessions	O70137	Gene names	Alx3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

CDX4_MOUSE
θ value	8.97725e-08 (rank : 171)	NC score	0.903280 (rank : 102)
Query Neighborhood Hits	349	Target Neighborhood Hits	378	Shared Neighborhood Hits	320
SwissProt Accessions	Q07424	Gene names	Cdx4, Cdx-4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

CRX_HUMAN
θ value	8.97725e-08 (rank : 172)	NC score	0.855241 (rank : 204)
Query Neighborhood Hits	349	Target Neighborhood Hits	360	Shared Neighborhood Hits	321
SwissProt Accessions	O43186	Gene names	CRX, CORD2
Domain Architecture
Description	Cone-rod homeobox protein.

CRX_MOUSE
θ value	8.97725e-08 (rank : 173)	NC score	0.852261 (rank : 207)
Query Neighborhood Hits	349	Target Neighborhood Hits	359	Shared Neighborhood Hits	318
SwissProt Accessions	O54751	Gene names	Crx
Domain Architecture
Description	Cone-rod homeobox protein.

GSC_HUMAN
θ value	8.97725e-08 (rank : 174)	NC score	0.875759 (rank : 169)
Query Neighborhood Hits	349	Target Neighborhood Hits	369	Shared Neighborhood Hits	327
SwissProt Accessions	P56915, Q86YR1	Gene names	GSC
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid.

GSC_MOUSE
θ value	8.97725e-08 (rank : 175)	NC score	0.875438 (rank : 171)
Query Neighborhood Hits	349	Target Neighborhood Hits	368	Shared Neighborhood Hits	326
SwissProt Accessions	Q02591	Gene names	Gsc
Domain Architecture
Description	Homeobox protein goosecoid.

HXD1_MOUSE
θ value	8.97725e-08 (rank : 176)	NC score	0.900396 (rank : 106)
Query Neighborhood Hits	349	Target Neighborhood Hits	381	Shared Neighborhood Hits	313
SwissProt Accessions	Q01822	Gene names	Hoxd1, Hox-4.9, Hoxd-1
Domain Architecture
Description	Homeobox protein Hox-D1 (Hox-4.9).

HXD8_MOUSE
θ value	8.97725e-08 (rank : 177)	NC score	0.868508 (rank : 188)
Query Neighborhood Hits	349	Target Neighborhood Hits	333	Shared Neighborhood Hits	309
SwissProt Accessions	P23463	Gene names	Hoxd8, Hox-4.3, Hoxd-8
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4).

PITX2_HUMAN
θ value	8.97725e-08 (rank : 178)	NC score	0.878179 (rank : 158)
Query Neighborhood Hits	349	Target Neighborhood Hits	381	Shared Neighborhood Hits	332
SwissProt Accessions	Q99697, O60578, O60579, O60580, Q9BY17	Gene names	PITX2, ARP1, RGS, RIEG, RIEG1
Domain Architecture
Description	Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription factor) (Solurshin) (ALL1-responsive protein ARP1).

CART1_HUMAN
θ value	1.17247e-07 (rank : 179)	NC score	0.857199 (rank : 201)
Query Neighborhood Hits	349	Target Neighborhood Hits	348	Shared Neighborhood Hits	324
SwissProt Accessions	Q15699, Q546C8, Q96FH4	Gene names	CART1
Domain Architecture
Description	Cartilage homeoprotein 1 (CART-1).

CART1_MOUSE
θ value	1.17247e-07 (rank : 180)	NC score	0.856119 (rank : 203)
Query Neighborhood Hits	349	Target Neighborhood Hits	344	Shared Neighborhood Hits	321
SwissProt Accessions	Q8C8B0, Q8C370	Gene names	Cart1
Domain Architecture	No domain graphic available
Description	Cartilage homeoprotein 1 (CART-1).

GSH2_HUMAN
θ value	1.17247e-07 (rank : 181)	NC score	0.915171 (rank : 76)
Query Neighborhood Hits	349	Target Neighborhood Hits	324	Shared Neighborhood Hits	304
SwissProt Accessions	Q9BZM3	Gene names	GSH2
Domain Architecture
Description	Homeobox protein GSH-2.

GSH2_MOUSE
θ value	1.17247e-07 (rank : 182)	NC score	0.913614 (rank : 81)
Query Neighborhood Hits	349	Target Neighborhood Hits	319	Shared Neighborhood Hits	304
SwissProt Accessions	P31316	Gene names	Gsh2, Gsh-2
Domain Architecture
Description	Homeobox protein GSH-2.

HXD12_HUMAN
θ value	1.17247e-07 (rank : 183)	NC score	0.901793 (rank : 104)
Query Neighborhood Hits	349	Target Neighborhood Hits	334	Shared Neighborhood Hits	316
SwissProt Accessions	P35452, Q9NS03	Gene names	HOXD12, HOX4H
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4H).

PAX7_HUMAN
θ value	1.53129e-07 (rank : 184)	NC score	0.767654 (rank : 229)
Query Neighborhood Hits	349	Target Neighborhood Hits	456	Shared Neighborhood Hits	336
SwissProt Accessions	P23759	Gene names	PAX7, HUP1
Domain Architecture
Description	Paired box protein Pax-7 (HUP1).

PAX7_MOUSE
θ value	1.53129e-07 (rank : 185)	NC score	0.767205 (rank : 230)
Query Neighborhood Hits	349	Target Neighborhood Hits	422	Shared Neighborhood Hits	336
SwissProt Accessions	P47239, Q9ES16	Gene names	Pax7, Pax-7
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-7.

PHX2A_HUMAN
θ value	1.53129e-07 (rank : 186)	NC score	0.884198 (rank : 145)
Query Neighborhood Hits	349	Target Neighborhood Hits	345	Shared Neighborhood Hits	312
SwissProt Accessions	O14813, Q8IVZ2	Gene names	PHOX2A, ARIX, PMX2A
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (Aristaless homeobox protein homolog) (ARIX1 homeodomain protein).

PHX2A_MOUSE
θ value	1.53129e-07 (rank : 187)	NC score	0.882316 (rank : 150)
Query Neighborhood Hits	349	Target Neighborhood Hits	338	Shared Neighborhood Hits	312
SwissProt Accessions	Q62066	Gene names	Phox2a, Arix, Phox2, Pmx2, Pmx2a
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (PHOX2A homeodomain protein) (Aristaless homeobox protein homolog).

PROP1_HUMAN
θ value	1.53129e-07 (rank : 188)	NC score	0.866543 (rank : 193)
Query Neighborhood Hits	349	Target Neighborhood Hits	354	Shared Neighborhood Hits	333
SwissProt Accessions	O75360	Gene names	PROP1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

PRRX2_HUMAN
θ value	1.53129e-07 (rank : 189)	NC score	0.863691 (rank : 195)
Query Neighborhood Hits	349	Target Neighborhood Hits	348	Shared Neighborhood Hits	320
SwissProt Accessions	Q99811, Q9UIB3	Gene names	PRRX2, PMX2, PRX2
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Paired-related homeobox protein 2).

HXA6_HUMAN
θ value	1.99992e-07 (rank : 190)	NC score	0.868588 (rank : 187)
Query Neighborhood Hits	349	Target Neighborhood Hits	309	Shared Neighborhood Hits	298
SwissProt Accessions	P31267, Q9UPM0	Gene names	HOXA6, HOX1B
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A6 (Hox-1B).

HXA6_MOUSE
θ value	1.99992e-07 (rank : 191)	NC score	0.869130 (rank : 185)
Query Neighborhood Hits	349	Target Neighborhood Hits	304	Shared Neighborhood Hits	294
SwissProt Accessions	P09092, Q9JI98	Gene names	Hoxa6, Hox-1.2, Hoxa-6
Domain Architecture
Description	Homeobox protein Hox-A6 (Hox-1.2) (M5-4).

HXC6_HUMAN
θ value	1.99992e-07 (rank : 192)	NC score	0.878355 (rank : 156)
Query Neighborhood Hits	349	Target Neighborhood Hits	306	Shared Neighborhood Hits	297
SwissProt Accessions	P09630	Gene names	HOXC6, HOX3C
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3C) (HHO.C8) (CP25).

HXC6_MOUSE
θ value	1.99992e-07 (rank : 193)	NC score	0.878355 (rank : 157)
Query Neighborhood Hits	349	Target Neighborhood Hits	306	Shared Neighborhood Hits	297
SwissProt Accessions	P10629, Q61683	Gene names	Hoxc6, Hox-3.3, Hoxc-6
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3.3) (Hox-6.1).

ALX3_HUMAN
θ value	3.41135e-07 (rank : 194)	NC score	0.851721 (rank : 208)
Query Neighborhood Hits	349	Target Neighborhood Hits	380	Shared Neighborhood Hits	330
SwissProt Accessions	O95076, O95075	Gene names	ALX3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

HXC11_HUMAN
θ value	3.41135e-07 (rank : 195)	NC score	0.888257 (rank : 133)
Query Neighborhood Hits	349	Target Neighborhood Hits	349	Shared Neighborhood Hits	315
SwissProt Accessions	O43248, Q96DH2	Gene names	HOXC11
Domain Architecture
Description	Homeobox protein Hox-C11.

HXD1_HUMAN
θ value	3.41135e-07 (rank : 196)	NC score	0.900199 (rank : 107)
Query Neighborhood Hits	349	Target Neighborhood Hits	337	Shared Neighborhood Hits	309
SwissProt Accessions	Q9GZZ0	Gene names	HOXD1
Domain Architecture
Description	Homeobox protein Hox-D1.

PITX1_HUMAN
θ value	3.41135e-07 (rank : 197)	NC score	0.874453 (rank : 174)
Query Neighborhood Hits	349	Target Neighborhood Hits	353	Shared Neighborhood Hits	323
SwissProt Accessions	P78337, O14677, O60425, Q9BTI5	Gene names	PITX1, BFT, PTX1
Domain Architecture
Description	Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot).

PITX1_MOUSE
θ value	3.41135e-07 (rank : 198)	NC score	0.875067 (rank : 172)
Query Neighborhood Hits	349	Target Neighborhood Hits	362	Shared Neighborhood Hits	330
SwissProt Accessions	P70314, O54742, P70427	Gene names	Pitx1, Bft, Potx, Ptx1
Domain Architecture
Description	Pituitary homeobox 1 (Homeobox protein P-OTX) (Pituitary OTX-related factor) (Hindlimb expressed homeobox protein backfoot) (Ptx1).

PROP1_MOUSE
θ value	4.45536e-07 (rank : 199)	NC score	0.856314 (rank : 202)
Query Neighborhood Hits	349	Target Neighborhood Hits	361	Shared Neighborhood Hits	331
SwissProt Accessions	P97458	Gene names	Prop1, Prop-1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

EVX1_MOUSE
θ value	5.81887e-07 (rank : 200)	NC score	0.903867 (rank : 100)
Query Neighborhood Hits	349	Target Neighborhood Hits	350	Shared Neighborhood Hits	311
SwissProt Accessions	P23683	Gene names	Evx1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

OTX2_HUMAN
θ value	5.81887e-07 (rank : 201)	NC score	0.826392 (rank : 224)
Query Neighborhood Hits	349	Target Neighborhood Hits	341	Shared Neighborhood Hits	315
SwissProt Accessions	P32243, Q6GTV3, Q9HAW3, Q9P2R1	Gene names	OTX2
Domain Architecture
Description	Homeobox protein OTX2.

OTX2_MOUSE
θ value	5.81887e-07 (rank : 202)	NC score	0.826939 (rank : 223)
Query Neighborhood Hits	349	Target Neighborhood Hits	345	Shared Neighborhood Hits	317
SwissProt Accessions	P80206	Gene names	Otx2, Otx-2
Domain Architecture
Description	Homeobox protein OTX2.

PRRXL_MOUSE
θ value	5.81887e-07 (rank : 203)	NC score	0.874022 (rank : 176)
Query Neighborhood Hits	349	Target Neighborhood Hits	350	Shared Neighborhood Hits	331
SwissProt Accessions	Q8BYH0, Q8K3F8	Gene names	Prrxl1, Drg11
Domain Architecture	No domain graphic available
Description	Paired-related homeobox protein-like 1 (Dorsal root ganglion 11) (Homeobox protein DRG11).

HESX1_HUMAN
θ value	7.59969e-07 (rank : 204)	NC score	0.889698 (rank : 130)
Query Neighborhood Hits	349	Target Neighborhood Hits	326	Shared Neighborhood Hits	316
SwissProt Accessions	Q9UBX0, Q99667	Gene names	HESX1, HANF
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (hAnf).

EVX1_HUMAN
θ value	9.92553e-07 (rank : 205)	NC score	0.899652 (rank : 108)
Query Neighborhood Hits	349	Target Neighborhood Hits	349	Shared Neighborhood Hits	310
SwissProt Accessions	P49640	Gene names	EVX1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

EVX2_HUMAN
θ value	9.92553e-07 (rank : 206)	NC score	0.903803 (rank : 101)
Query Neighborhood Hits	349	Target Neighborhood Hits	325	Shared Neighborhood Hits	308
SwissProt Accessions	Q03828	Gene names	EVX2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

EVX2_MOUSE
θ value	9.92553e-07 (rank : 207)	NC score	0.904054 (rank : 99)
Query Neighborhood Hits	349	Target Neighborhood Hits	327	Shared Neighborhood Hits	309
SwissProt Accessions	P49749	Gene names	Evx2, Evx-2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

OTX1_HUMAN
θ value	9.92553e-07 (rank : 208)	NC score	0.848410 (rank : 211)
Query Neighborhood Hits	349	Target Neighborhood Hits	379	Shared Neighborhood Hits	317
SwissProt Accessions	P32242, Q53TG6	Gene names	OTX1
Domain Architecture
Description	Homeobox protein OTX1.

OTX1_MOUSE
θ value	9.92553e-07 (rank : 209)	NC score	0.842806 (rank : 215)
Query Neighborhood Hits	349	Target Neighborhood Hits	372	Shared Neighborhood Hits	319
SwissProt Accessions	P80205	Gene names	Otx1, Otx-1
Domain Architecture
Description	Homeobox protein OTX1.

PAX6_HUMAN
θ value	9.92553e-07 (rank : 210)	NC score	0.746907 (rank : 235)
Query Neighborhood Hits	349	Target Neighborhood Hits	383	Shared Neighborhood Hits	321
SwissProt Accessions	P26367, Q6N006, Q99413	Gene names	PAX6, AN2
Domain Architecture
Description	Paired box protein Pax-6 (Oculorhombin) (Aniridia type II protein).

PAX6_MOUSE
θ value	9.92553e-07 (rank : 211)	NC score	0.746907 (rank : 236)
Query Neighborhood Hits	349	Target Neighborhood Hits	383	Shared Neighborhood Hits	321
SwissProt Accessions	P63015, P32117, P70601, Q62222, Q64037, Q8CEI5, Q8VDB5, Q921Q8	Gene names	Pax6, Pax-6, Sey
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-6 (Oculorhombin).

HESX1_MOUSE
θ value	1.29631e-06 (rank : 212)	NC score	0.890979 (rank : 126)
Query Neighborhood Hits	349	Target Neighborhood Hits	331	Shared Neighborhood Hits	316
SwissProt Accessions	Q61658, Q61047	Gene names	Hesx1, Hes-1, Rpx
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (Anterior- restricted homeobox protein) (Rathke pouch homeo box).

HXC13_HUMAN
θ value	1.29631e-06 (rank : 213)	NC score	0.848147 (rank : 212)
Query Neighborhood Hits	349	Target Neighborhood Hits	336	Shared Neighborhood Hits	317
SwissProt Accessions	P31276, Q96J32, Q9NR24, Q9NYD5	Gene names	HOXC13, HOX3G
Domain Architecture
Description	Homeobox protein Hox-C13 (Hox-3G).

HXC13_MOUSE
θ value	1.29631e-06 (rank : 214)	NC score	0.848009 (rank : 213)
Query Neighborhood Hits	349	Target Neighborhood Hits	337	Shared Neighborhood Hits	317
SwissProt Accessions	P50207, Q53Z78, Q920I7	Gene names	Hoxc13, Hoxc-13
Domain Architecture
Description	Homeobox protein Hox-C13.

VSX1_HUMAN
θ value	1.69304e-06 (rank : 215)	NC score	0.834809 (rank : 221)
Query Neighborhood Hits	349	Target Neighborhood Hits	344	Shared Neighborhood Hits	310
SwissProt Accessions	Q9NZR4, Q5TF40, Q5TF41, Q9HCU3, Q9NU27	Gene names	VSX1, RINX
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

VSX1_MOUSE
θ value	2.21117e-06 (rank : 216)	NC score	0.834494 (rank : 222)
Query Neighborhood Hits	349	Target Neighborhood Hits	356	Shared Neighborhood Hits	305
SwissProt Accessions	Q91V10	Gene names	Vsx1, Rinx
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

CHX10_HUMAN
θ value	3.77169e-06 (rank : 217)	NC score	0.838153 (rank : 220)
Query Neighborhood Hits	349	Target Neighborhood Hits	340	Shared Neighborhood Hits	312
SwissProt Accessions	P58304	Gene names	CHX10, VSX2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

CHX10_MOUSE
θ value	3.77169e-06 (rank : 218)	NC score	0.838522 (rank : 219)
Query Neighborhood Hits	349	Target Neighborhood Hits	340	Shared Neighborhood Hits	311
SwissProt Accessions	Q61412	Gene names	Chx10, Vsx2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

HXA13_HUMAN
θ value	3.77169e-06 (rank : 219)	NC score	0.857918 (rank : 200)
Query Neighborhood Hits	349	Target Neighborhood Hits	353	Shared Neighborhood Hits	312
SwissProt Accessions	P31271, O43371	Gene names	HOXA13, HOX1J
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1J).

HXA13_MOUSE
θ value	3.77169e-06 (rank : 220)	NC score	0.859593 (rank : 198)
Query Neighborhood Hits	349	Target Neighborhood Hits	351	Shared Neighborhood Hits	312
SwissProt Accessions	Q62424	Gene names	Hoxa13, Hox-1.10
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1.10).

LHX2_HUMAN
θ value	4.92598e-06 (rank : 221)	NC score	0.549816 (rank : 238)
Query Neighborhood Hits	349	Target Neighborhood Hits	432	Shared Neighborhood Hits	316
SwissProt Accessions	P50458, O95860, Q8N1Z3	Gene names	LHX2, LH2
Domain Architecture
Description	LIM/homeobox protein Lhx2 (Homeobox protein LH-2).

HXD13_HUMAN
θ value	6.43352e-06 (rank : 222)	NC score	0.841279 (rank : 217)
Query Neighborhood Hits	349	Target Neighborhood Hits	332	Shared Neighborhood Hits	309
SwissProt Accessions	P35453	Gene names	HOXD13, HOX4I
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4I).

HXD13_MOUSE
θ value	6.43352e-06 (rank : 223)	NC score	0.841042 (rank : 218)
Query Neighborhood Hits	349	Target Neighborhood Hits	324	Shared Neighborhood Hits	309
SwissProt Accessions	P70217, Q2VPB0, Q2VPB1, Q64177	Gene names	Hoxd13, Hox-4.8
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4.8).

LHX2_MOUSE
θ value	6.43352e-06 (rank : 224)	NC score	0.548459 (rank : 239)
Query Neighborhood Hits	349	Target Neighborhood Hits	431	Shared Neighborhood Hits	315
SwissProt Accessions	Q9Z0S2	Gene names	Lhx2
Domain Architecture
Description	LIM/homeobox protein Lhx2.

HXC12_HUMAN
θ value	1.09739e-05 (rank : 225)	NC score	0.875691 (rank : 170)
Query Neighborhood Hits	349	Target Neighborhood Hits	313	Shared Neighborhood Hits	305
SwissProt Accessions	P31275, Q9BXJ6	Gene names	HOXC12, HOX3F
Domain Architecture
Description	Homeobox protein Hox-C12 (Hox-3F).

HXC12_MOUSE
θ value	1.09739e-05 (rank : 226)	NC score	0.873906 (rank : 177)
Query Neighborhood Hits	349	Target Neighborhood Hits	316	Shared Neighborhood Hits	305
SwissProt Accessions	Q8K5B8	Gene names	Hoxc12, Hox-3.8, Hoxc-12
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C12 (Hox-3.8).

LHX9_HUMAN
θ value	1.09739e-05 (rank : 227)	NC score	0.530579 (rank : 241)
Query Neighborhood Hits	349	Target Neighborhood Hits	444	Shared Neighborhood Hits	313
SwissProt Accessions	Q9NQ69, Q5VUE3, Q9BYU6, Q9NQ70	Gene names	LHX9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

LHX9_MOUSE
θ value	1.09739e-05 (rank : 228)	NC score	0.530843 (rank : 240)
Query Neighborhood Hits	349	Target Neighborhood Hits	445	Shared Neighborhood Hits	313
SwissProt Accessions	Q9WUH2, Q9QYQ5, Q9QYQ6, Q9QZ00, Q9WU44	Gene names	Lhx9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

PEPP1_HUMAN
θ value	1.09739e-05 (rank : 229)	NC score	0.897906 (rank : 110)
Query Neighborhood Hits	349	Target Neighborhood Hits	338	Shared Neighborhood Hits	323
SwissProt Accessions	Q8NHV9, O95030, Q3SYE0	Gene names	PEPP1, OTEX
Domain Architecture
Description	Paired-like homeobox protein PEPP-1 (Ovary-, testis- and epididymis- expressed gene protein).

DUX1_HUMAN
θ value	1.43324e-05 (rank : 230)	NC score	0.809092 (rank : 225)
Query Neighborhood Hits	349	Target Neighborhood Hits	330	Shared Neighborhood Hits	323
SwissProt Accessions	O43812	Gene names	DUX1
Domain Architecture	No domain graphic available
Description	Double homeobox protein 1.

DUX5_HUMAN
θ value	1.43324e-05 (rank : 231)	NC score	0.804429 (rank : 226)
Query Neighborhood Hits	349	Target Neighborhood Hits	330	Shared Neighborhood Hits	323
SwissProt Accessions	Q96PT3	Gene names	DUX5
Domain Architecture	No domain graphic available
Description	Double homeobox protein 5.

HXB13_HUMAN
θ value	1.43324e-05 (rank : 232)	NC score	0.842390 (rank : 216)
Query Neighborhood Hits	349	Target Neighborhood Hits	377	Shared Neighborhood Hits	314
SwissProt Accessions	Q92826, Q96QM4, Q99810	Gene names	HOXB13
Domain Architecture
Description	Homeobox protein Hox-B13.

HXB13_MOUSE
θ value	1.43324e-05 (rank : 233)	NC score	0.844021 (rank : 214)
Query Neighborhood Hits	349	Target Neighborhood Hits	384	Shared Neighborhood Hits	309
SwissProt Accessions	P70321, Q80Y12	Gene names	Hoxb13
Domain Architecture
Description	Homeobox protein Hox-B13.

DUX3_HUMAN
θ value	5.44631e-05 (rank : 234)	NC score	0.797848 (rank : 227)
Query Neighborhood Hits	349	Target Neighborhood Hits	312	Shared Neighborhood Hits	306
SwissProt Accessions	Q96PT4, Q9UND2	Gene names	DUX3
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 3.

DUX4_HUMAN
θ value	7.1131e-05 (rank : 235)	NC score	0.771806 (rank : 228)
Query Neighborhood Hits	349	Target Neighborhood Hits	403	Shared Neighborhood Hits	321
SwissProt Accessions	Q9UBX2	Gene names	DUX4, DUX10
Domain Architecture	No domain graphic available
Description	Double homeobox protein 4 (Double homeobox protein 10) (Double homeobox protein 4/10).

LHX61_HUMAN
θ value	9.29e-05 (rank : 236)	NC score	0.525301 (rank : 246)
Query Neighborhood Hits	349	Target Neighborhood Hits	412	Shared Neighborhood Hits	301
SwissProt Accessions	Q9UPM6, Q5T7S8, Q9NTK3, Q9UPM5	Gene names	LHX6, LHX6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1 (Lhx6).

ZFHX2_HUMAN
θ value	0.000121331 (rank : 237)	NC score	0.582552 (rank : 237)
Query Neighborhood Hits	349	Target Neighborhood Hits	1178	Shared Neighborhood Hits	319
SwissProt Accessions	Q9C0A1	Gene names	ZFHX2, KIAA1762
Domain Architecture
Description	Zinc finger homeobox protein 2.

GSCL_HUMAN
θ value	0.00020696 (rank : 238)	NC score	0.872002 (rank : 183)
Query Neighborhood Hits	349	Target Neighborhood Hits	343	Shared Neighborhood Hits	322
SwissProt Accessions	O15499	Gene names	GSCL
Domain Architecture
Description	Homeobox protein goosecoid-like (GSC-2).

GSCL_MOUSE
θ value	0.000270298 (rank : 239)	NC score	0.853742 (rank : 206)
Query Neighborhood Hits	349	Target Neighborhood Hits	339	Shared Neighborhood Hits	322
SwissProt Accessions	P56916	Gene names	Gscl
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid-like (GSC-2).

LHX61_MOUSE
θ value	0.000270298 (rank : 240)	NC score	0.491175 (rank : 259)
Query Neighborhood Hits	349	Target Neighborhood Hits	396	Shared Neighborhood Hits	283
SwissProt Accessions	Q9R1R0, Q9R1R1	Gene names	Lhx6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1.

ATBF1_HUMAN
θ value	0.000786445 (rank : 241)	NC score	0.409082 (rank : 274)
Query Neighborhood Hits	349	Target Neighborhood Hits	1547	Shared Neighborhood Hits	335
SwissProt Accessions	Q15911, O15101, Q13719	Gene names	ATBF1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

ATBF1_MOUSE
θ value	0.000786445 (rank : 242)	NC score	0.405725 (rank : 275)
Query Neighborhood Hits	349	Target Neighborhood Hits	1841	Shared Neighborhood Hits	335
SwissProt Accessions	Q61329	Gene names	Atbf1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

CUTL1_HUMAN
θ value	0.000786445 (rank : 243)	NC score	0.160026 (rank : 340)
Query Neighborhood Hits	349	Target Neighborhood Hits	1574	Shared Neighborhood Hits	213
SwissProt Accessions	P39880, Q6NYH4, Q9UEV5	Gene names	CUTL1
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP).

LHX6_MOUSE
θ value	0.00102713 (rank : 244)	NC score	0.528170 (rank : 242)
Query Neighborhood Hits	349	Target Neighborhood Hits	399	Shared Neighborhood Hits	297
SwissProt Accessions	O88706	Gene names	Lhx6
Domain Architecture
Description	LIM/homeobox protein Lhx6.

PO6F2_MOUSE
θ value	0.00102713 (rank : 245)	NC score	0.517843 (rank : 252)
Query Neighborhood Hits	349	Target Neighborhood Hits	639	Shared Neighborhood Hits	306
SwissProt Accessions	Q8BJI4	Gene names	Pou6f2
Domain Architecture	No domain graphic available
Description	POU domain, class 6, transcription factor 2.

CUTL1_MOUSE
θ value	0.00134147 (rank : 246)	NC score	0.171041 (rank : 339)
Query Neighborhood Hits	349	Target Neighborhood Hits	1620	Shared Neighborhood Hits	222
SwissProt Accessions	P53564, O08994, P70301, Q571L6, Q91ZD2	Gene names	Cutl1, Cux, Cux1, Kiaa4047
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP) (Homeobox protein Cux).

PEPP2_HUMAN
θ value	0.00134147 (rank : 247)	NC score	0.881031 (rank : 153)
Query Neighborhood Hits	349	Target Neighborhood Hits	316	Shared Neighborhood Hits	300
SwissProt Accessions	Q9BQY4, Q9BR00	Gene names	PEPP2, THG1
Domain Architecture
Description	Paired-like homeobox protein PEPP-2 (Testis homeobox gene 1).

PO2F3_HUMAN
θ value	0.00134147 (rank : 248)	NC score	0.442756 (rank : 264)
Query Neighborhood Hits	349	Target Neighborhood Hits	319	Shared Neighborhood Hits	293
SwissProt Accessions	Q9UKI9, Q9UKR7, Q9Y504	Gene names	POU2F3, OTF11, PLA1
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Transcription factor Skn-1) (PLA-1 protein).

PO6F2_HUMAN
θ value	0.00134147 (rank : 249)	NC score	0.517449 (rank : 253)
Query Neighborhood Hits	349	Target Neighborhood Hits	618	Shared Neighborhood Hits	303
SwissProt Accessions	P78424, P78425, Q75ME8, Q86UM6, Q9UDS7	Gene names	POU6F2, RPF1
Domain Architecture
Description	POU domain, class 6, transcription factor 2 (Retina-derived POU-domain factor 1) (RPF-1).

ZHX2_MOUSE
θ value	0.00134147 (rank : 250)	NC score	0.209473 (rank : 332)
Query Neighborhood Hits	349	Target Neighborhood Hits	435	Shared Neighborhood Hits	173
SwissProt Accessions	Q8C0C0	Gene names	Zhx2, Afr1, Raf
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

PO2F3_MOUSE
θ value	0.00175202 (rank : 251)	NC score	0.445801 (rank : 263)
Query Neighborhood Hits	349	Target Neighborhood Hits	328	Shared Neighborhood Hits	295
SwissProt Accessions	P31362	Gene names	Pou2f3, Epoc1, Oct11, Otf-11, Otf11
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Epoc-1).

PO6F1_MOUSE
θ value	0.00228821 (rank : 252)	NC score	0.478465 (rank : 262)
Query Neighborhood Hits	349	Target Neighborhood Hits	581	Shared Neighborhood Hits	304
SwissProt Accessions	Q07916, Q91XK3	Gene names	Pou6f1, Emb
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (Octamer-binding transcription factor EMB) (Transcription regulatory protein MCP-1).

LHX8_MOUSE
θ value	0.00298849 (rank : 253)	NC score	0.500502 (rank : 257)
Query Neighborhood Hits	349	Target Neighborhood Hits	406	Shared Neighborhood Hits	298
SwissProt Accessions	O35652, O70163, O88707	Gene names	Lhx8, Lhx7
Domain Architecture
Description	LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3).

PAX4_MOUSE
θ value	0.00298849 (rank : 254)	NC score	0.752088 (rank : 234)
Query Neighborhood Hits	349	Target Neighborhood Hits	370	Shared Neighborhood Hits	322
SwissProt Accessions	P32115, P97341, Q9QUR1, Q9R091	Gene names	Pax4, Pax-4
Domain Architecture
Description	Paired box protein Pax-4.

PO2F2_HUMAN
θ value	0.00298849 (rank : 255)	NC score	0.435551 (rank : 267)
Query Neighborhood Hits	349	Target Neighborhood Hits	379	Shared Neighborhood Hits	291
SwissProt Accessions	P09086, Q16648, Q9BRS4	Gene names	POU2F2, OCT2, OTF2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

PO2F2_MOUSE
θ value	0.00298849 (rank : 256)	NC score	0.436240 (rank : 266)
Query Neighborhood Hits	349	Target Neighborhood Hits	353	Shared Neighborhood Hits	289
SwissProt Accessions	Q00196, Q00197, Q00198, Q00199, Q00200, Q00201, Q05882, Q61995, Q61996, Q64245	Gene names	Pou2f2, Oct2, Otf2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

MEIS3_HUMAN
θ value	0.00390308 (rank : 257)	NC score	0.135920 (rank : 342)
Query Neighborhood Hits	349	Target Neighborhood Hits	118	Shared Neighborhood Hits	100
SwissProt Accessions	Q99687, Q6NT73, Q8TC66, Q9NPW2	Gene names	MEIS3, MRG2
Domain Architecture	No domain graphic available
Description	Homeobox protein Meis3 (Meis1-related protein 2).

PAX4_HUMAN
θ value	0.00390308 (rank : 258)	NC score	0.754855 (rank : 233)
Query Neighborhood Hits	349	Target Neighborhood Hits	367	Shared Neighborhood Hits	324
SwissProt Accessions	O43316, O95161, Q6B0H0	Gene names	PAX4
Domain Architecture
Description	Paired box protein Pax-4.

PO6F1_HUMAN
θ value	0.00390308 (rank : 259)	NC score	0.494907 (rank : 258)
Query Neighborhood Hits	349	Target Neighborhood Hits	370	Shared Neighborhood Hits	303
SwissProt Accessions	Q14863	Gene names	POU6F1, BRN5, MPOU, TCFB1
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (mPOU homeobox protein) (Brain-specific homeobox/POU domain protein 5) (Brain-5) (Brn-5 protein).

LHX5_HUMAN
θ value	0.00509761 (rank : 260)	NC score	0.527676 (rank : 243)
Query Neighborhood Hits	349	Target Neighborhood Hits	453	Shared Neighborhood Hits	327
SwissProt Accessions	Q9H2C1	Gene names	LHX5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

LHX5_MOUSE
θ value	0.00509761 (rank : 261)	NC score	0.527243 (rank : 244)
Query Neighborhood Hits	349	Target Neighborhood Hits	456	Shared Neighborhood Hits	327
SwissProt Accessions	P61375, P50459	Gene names	Lhx5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

LHX1_HUMAN
θ value	0.00665767 (rank : 262)	NC score	0.523462 (rank : 248)
Query Neighborhood Hits	349	Target Neighborhood Hits	453	Shared Neighborhood Hits	327
SwissProt Accessions	P48742, Q3MIW0	Gene names	LHX1, LIM1
Domain Architecture
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

LHX1_MOUSE
θ value	0.00665767 (rank : 263)	NC score	0.524087 (rank : 247)
Query Neighborhood Hits	349	Target Neighborhood Hits	453	Shared Neighborhood Hits	327
SwissProt Accessions	P63006, P36199	Gene names	Lhx1, Lim-1, Lim1
Domain Architecture	No domain graphic available
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

LHX3_HUMAN
θ value	0.00665767 (rank : 264)	NC score	0.526683 (rank : 245)
Query Neighborhood Hits	349	Target Neighborhood Hits	474	Shared Neighborhood Hits	331
SwissProt Accessions	Q9UBR4, Q9NZB5, Q9P0I8, Q9P0I9	Gene names	LHX3
Domain Architecture
Description	LIM/homeobox protein Lhx3.

LHX3_MOUSE
θ value	0.00665767 (rank : 265)	NC score	0.522219 (rank : 249)
Query Neighborhood Hits	349	Target Neighborhood Hits	451	Shared Neighborhood Hits	325
SwissProt Accessions	P50481, Q61800, Q61801	Gene names	Lhx3, Lim-3, Lim3, Plim
Domain Architecture
Description	LIM/homeobox protein Lhx3 (Homeobox protein LIM-3) (Homeobox protein P-LIM) (LIM homeobox protein 3).

PO2F1_MOUSE
θ value	0.00665767 (rank : 266)	NC score	0.426718 (rank : 268)
Query Neighborhood Hits	349	Target Neighborhood Hits	408	Shared Neighborhood Hits	300
SwissProt Accessions	P25425, Q61994, Q63891, Q6Y681, Q7TSD0, Q8BT04, Q8K570, Q99JH0, Q9WTZ4, Q9WTZ5, Q9WTZ6	Gene names	Pou2f1, Oct-1, Otf-1, Otf1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

SIX3_HUMAN
θ value	0.00665767 (rank : 267)	NC score	0.333555 (rank : 301)
Query Neighborhood Hits	349	Target Neighborhood Hits	285	Shared Neighborhood Hits	259
SwissProt Accessions	O95343	Gene names	SIX3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX3_MOUSE
θ value	0.00665767 (rank : 268)	NC score	0.333500 (rank : 302)
Query Neighborhood Hits	349	Target Neighborhood Hits	289	Shared Neighborhood Hits	259
SwissProt Accessions	Q62233, P70176, P70177	Gene names	Six3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

PO2F1_HUMAN
θ value	0.0113563 (rank : 269)	NC score	0.439773 (rank : 265)
Query Neighborhood Hits	349	Target Neighborhood Hits	426	Shared Neighborhood Hits	307
SwissProt Accessions	P14859, Q5TBT7, Q6PK46, Q8NEU9, Q9BPV1	Gene names	POU2F1, OCT1, OTF1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

PO5F1_HUMAN
θ value	0.0148317 (rank : 270)	NC score	0.323112 (rank : 305)
Query Neighborhood Hits	349	Target Neighborhood Hits	321	Shared Neighborhood Hits	276
SwissProt Accessions	Q01860, P31359, Q15167, Q15168, Q16422	Gene names	POU5F1, OCT3, OCT4, OTF3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4).

PO5F1_MOUSE
θ value	0.0193708 (rank : 271)	NC score	0.329312 (rank : 304)
Query Neighborhood Hits	349	Target Neighborhood Hits	305	Shared Neighborhood Hits	266
SwissProt Accessions	P20263, Q63843	Gene names	Pou5f1, Oct-3, Oct-4, Otf-3, Otf3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4) (NF-A3).

SIX1_HUMAN
θ value	0.0193708 (rank : 272)	NC score	0.378569 (rank : 284)
Query Neighborhood Hits	349	Target Neighborhood Hits	343	Shared Neighborhood Hits	309
SwissProt Accessions	Q15475, Q96H64	Gene names	SIX1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

SIX1_MOUSE
θ value	0.0193708 (rank : 273)	NC score	0.378782 (rank : 283)
Query Neighborhood Hits	349	Target Neighborhood Hits	341	Shared Neighborhood Hits	309
SwissProt Accessions	Q62231, Q8CIL7	Gene names	Six1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

MEIS3_MOUSE
θ value	0.0252991 (rank : 274)	NC score	0.132272 (rank : 344)
Query Neighborhood Hits	349	Target Neighborhood Hits	118	Shared Neighborhood Hits	97
SwissProt Accessions	P97368, Q99L81	Gene names	Meis3, Mrg2
Domain Architecture
Description	Homeobox protein Meis3 (Meis1-related protein 2).

LMX1B_HUMAN
θ value	0.0330416 (rank : 275)	NC score	0.489146 (rank : 261)
Query Neighborhood Hits	349	Target Neighborhood Hits	404	Shared Neighborhood Hits	306
SwissProt Accessions	O60663, O75463	Gene names	LMX1B
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

LMX1B_MOUSE
θ value	0.0330416 (rank : 276)	NC score	0.489251 (rank : 260)
Query Neighborhood Hits	349	Target Neighborhood Hits	394	Shared Neighborhood Hits	305
SwissProt Accessions	O88609	Gene names	Lmx1b
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

MEIS1_HUMAN
θ value	0.0330416 (rank : 277)	NC score	0.131146 (rank : 346)
Query Neighborhood Hits	349	Target Neighborhood Hits	115	Shared Neighborhood Hits	99
SwissProt Accessions	O00470	Gene names	MEIS1
Domain Architecture
Description	Homeobox protein Meis1.

MEIS1_MOUSE
θ value	0.0330416 (rank : 278)	NC score	0.131139 (rank : 347)
Query Neighborhood Hits	349	Target Neighborhood Hits	115	Shared Neighborhood Hits	99
SwissProt Accessions	Q60954, Q5SVC8, Q60955, Q8CIL0	Gene names	Meis1
Domain Architecture
Description	Homeobox protein Meis1 (Myeloid ecotropic viral integration site 1).

SIX2_HUMAN
θ value	0.0330416 (rank : 279)	NC score	0.382047 (rank : 282)
Query Neighborhood Hits	349	Target Neighborhood Hits	345	Shared Neighborhood Hits	295
SwissProt Accessions	Q9NPC8, Q9BXH7	Gene names	SIX2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

SIX2_MOUSE
θ value	0.0330416 (rank : 280)	NC score	0.403610 (rank : 277)
Query Neighborhood Hits	349	Target Neighborhood Hits	376	Shared Neighborhood Hits	315
SwissProt Accessions	Q62232, P70179	Gene names	Six2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

LHX4_HUMAN
θ value	0.0431538 (rank : 281)	NC score	0.520421 (rank : 250)
Query Neighborhood Hits	349	Target Neighborhood Hits	455	Shared Neighborhood Hits	326
SwissProt Accessions	Q969G2, Q8NHE0, Q8TCJ1, Q8WWX2, Q969W2	Gene names	LHX4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

LHX4_MOUSE
θ value	0.0431538 (rank : 282)	NC score	0.519932 (rank : 251)
Query Neighborhood Hits	349	Target Neighborhood Hits	457	Shared Neighborhood Hits	326
SwissProt Accessions	P53776, O08916, Q9R280	Gene names	Lhx4, Gsh-4, Gsh4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

LMX1A_HUMAN
θ value	0.0431538 (rank : 283)	NC score	0.512888 (rank : 254)
Query Neighborhood Hits	349	Target Neighborhood Hits	406	Shared Neighborhood Hits	313
SwissProt Accessions	Q8TE12, Q8TE11	Gene names	LMX1A
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

PBX1_HUMAN
θ value	0.0431538 (rank : 284)	NC score	0.374970 (rank : 287)
Query Neighborhood Hits	349	Target Neighborhood Hits	317	Shared Neighborhood Hits	284
SwissProt Accessions	P40424	Gene names	PBX1, PRL
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1) (Homeobox protein PRL).

PBX1_MOUSE
θ value	0.0431538 (rank : 285)	NC score	0.374970 (rank : 288)
Query Neighborhood Hits	349	Target Neighborhood Hits	317	Shared Neighborhood Hits	284
SwissProt Accessions	P41778	Gene names	Pbx1, Pbx-1
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1).

ZHX2_HUMAN
θ value	0.0431538 (rank : 286)	NC score	0.212694 (rank : 327)
Query Neighborhood Hits	349	Target Neighborhood Hits	347	Shared Neighborhood Hits	176
SwissProt Accessions	Q9Y6X8	Gene names	ZHX2, AFR1, KIAA0854, RAF
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

PO5FL_HUMAN
θ value	0.0563607 (rank : 287)	NC score	0.210735 (rank : 330)
Query Neighborhood Hits	349	Target Neighborhood Hits	214	Shared Neighborhood Hits	186
SwissProt Accessions	Q06416, Q9BZV9	Gene names	POU5F1P1, OTF3C, POU5FLC8
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 1 (Octamer- binding protein 3-like).

PO5FM_HUMAN
θ value	0.0563607 (rank : 288)	NC score	0.212107 (rank : 328)
Query Neighborhood Hits	349	Target Neighborhood Hits	212	Shared Neighborhood Hits	189
SwissProt Accessions	Q9BZV7	Gene names	POU5F1P1, POU5FLC20
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 2.

SIX6_HUMAN
θ value	0.0563607 (rank : 289)	NC score	0.335640 (rank : 298)
Query Neighborhood Hits	349	Target Neighborhood Hits	269	Shared Neighborhood Hits	245
SwissProt Accessions	O95475, Q9P1X8	Gene names	SIX6, OPTX2, SIX9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Homeodomain protein OPTX2).

LMX1A_MOUSE
θ value	0.0736092 (rank : 290)	NC score	0.510722 (rank : 255)
Query Neighborhood Hits	349	Target Neighborhood Hits	405	Shared Neighborhood Hits	312
SwissProt Accessions	Q9JKU8	Gene names	Lmx1a
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

SIX4_HUMAN
θ value	0.0736092 (rank : 291)	NC score	0.373641 (rank : 289)
Query Neighborhood Hits	349	Target Neighborhood Hits	342	Shared Neighborhood Hits	282
SwissProt Accessions	Q9UIU6	Gene names	SIX4
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4).

SIX4_MOUSE
θ value	0.0736092 (rank : 292)	NC score	0.388066 (rank : 281)
Query Neighborhood Hits	349	Target Neighborhood Hits	341	Shared Neighborhood Hits	285
SwissProt Accessions	Q61321, Q61322, Q61323	Gene names	Six4, Arec3
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4) (Skeletal muscle-specific ARE-binding protein AREC3).

SIX6_MOUSE
θ value	0.0736092 (rank : 293)	NC score	0.329703 (rank : 303)
Query Neighborhood Hits	349	Target Neighborhood Hits	267	Shared Neighborhood Hits	246
SwissProt Accessions	Q9QZ28, O88423	Gene names	Six6, Optx2, Six9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Six9 protein).

CUTL2_HUMAN
θ value	0.0961366 (rank : 294)	NC score	0.172357 (rank : 338)
Query Neighborhood Hits	349	Target Neighborhood Hits	906	Shared Neighborhood Hits	178
SwissProt Accessions	O14529	Gene names	CUTL2, KIAA0293
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

PBX2_HUMAN
θ value	0.163984 (rank : 295)	NC score	0.402065 (rank : 279)
Query Neighborhood Hits	349	Target Neighborhood Hits	350	Shared Neighborhood Hits	293
SwissProt Accessions	P40425	Gene names	PBX2, G17
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2) (Protein G17).

PBX2_MOUSE
θ value	0.163984 (rank : 296)	NC score	0.403535 (rank : 278)
Query Neighborhood Hits	349	Target Neighborhood Hits	341	Shared Neighborhood Hits	293
SwissProt Accessions	O35984	Gene names	Pbx2
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2).

ISL1_HUMAN
θ value	0.21417 (rank : 297)	NC score	0.422647 (rank : 271)
Query Neighborhood Hits	349	Target Neighborhood Hits	421	Shared Neighborhood Hits	308
SwissProt Accessions	P61371, P20663, P47894	Gene names	ISL1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

ISL1_MOUSE
θ value	0.21417 (rank : 298)	NC score	0.422647 (rank : 272)
Query Neighborhood Hits	349	Target Neighborhood Hits	421	Shared Neighborhood Hits	308
SwissProt Accessions	P61372, P20663, P47894, Q812D8	Gene names	Isl1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

MEIS2_HUMAN
θ value	0.21417 (rank : 299)	NC score	0.132251 (rank : 345)
Query Neighborhood Hits	349	Target Neighborhood Hits	182	Shared Neighborhood Hits	105
SwissProt Accessions	O14770, Q96KI4, Q96KI5, Q9NRS1, Q9NRS2, Q9NRS3	Gene names	MEIS2, MRG1
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

MEIS2_MOUSE
θ value	0.21417 (rank : 300)	NC score	0.132435 (rank : 343)
Query Neighborhood Hits	349	Target Neighborhood Hits	208	Shared Neighborhood Hits	106
SwissProt Accessions	P97367, O35676, O35677, P97403, P97404	Gene names	Meis2, Mrg1, Stra10
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

PBX3_HUMAN
θ value	0.365318 (rank : 301)	NC score	0.377547 (rank : 286)
Query Neighborhood Hits	349	Target Neighborhood Hits	306	Shared Neighborhood Hits	282
SwissProt Accessions	P40426, Q96PF9, Q96PG0	Gene names	PBX3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX3_MOUSE
θ value	0.365318 (rank : 302)	NC score	0.377592 (rank : 285)
Query Neighborhood Hits	349	Target Neighborhood Hits	306	Shared Neighborhood Hits	282
SwissProt Accessions	O35317, Q925W2	Gene names	Pbx3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

HYAL1_HUMAN
θ value	0.62314 (rank : 303)	NC score	0.009531 (rank : 387)
Query Neighborhood Hits	349	Target Neighborhood Hits	19	Shared Neighborhood Hits	2
SwissProt Accessions	Q12794, Q6FH23, Q6PIZ6, Q7KYU2, Q7LE34, Q8NFK5, Q8NFK6, Q8NFK7, Q8NFK8, Q8NFK9, Q93013, Q9UKD5, Q9UNI8	Gene names	HYAL1, LUCA1
Domain Architecture	No domain graphic available
Description	Hyaluronidase-1 precursor (EC 3.2.1.35) (Hyal-1) (Hyaluronoglucosaminidase-1) (LUCA-1).

PBX4_MOUSE
θ value	0.62314 (rank : 304)	NC score	0.391873 (rank : 280)
Query Neighborhood Hits	349	Target Neighborhood Hits	324	Shared Neighborhood Hits	285
SwissProt Accessions	Q99NE9, Q8CFL2, Q99NE8	Gene names	Pbx4
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 4 (Homeobox protein PBX4).

PIT1_HUMAN
θ value	0.62314 (rank : 305)	NC score	0.416387 (rank : 273)
Query Neighborhood Hits	349	Target Neighborhood Hits	292	Shared Neighborhood Hits	277
SwissProt Accessions	P28069, O75757, Q15132, Q15133, Q9UEL3	Gene names	POU1F1, GHF1, PIT1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

TGIF_HUMAN
θ value	0.62314 (rank : 306)	NC score	0.093970 (rank : 362)
Query Neighborhood Hits	349	Target Neighborhood Hits	109	Shared Neighborhood Hits	64
SwissProt Accessions	Q15583, Q6ICR0, Q8N5X9, Q9NRS0	Gene names	TGIF
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

PO5FN_HUMAN
θ value	0.813845 (rank : 307)	NC score	0.148932 (rank : 341)
Query Neighborhood Hits	349	Target Neighborhood Hits	134	Shared Neighborhood Hits	120
SwissProt Accessions	Q9BZW0	Gene names	POU5FLC1
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 3.

TRIP6_HUMAN
θ value	0.813845 (rank : 308)	NC score	0.054389 (rank : 383)
Query Neighborhood Hits	349	Target Neighborhood Hits	228	Shared Neighborhood Hits	30
SwissProt Accessions	Q15654, O15170, O15275, Q9BTB2, Q9UNT4	Gene names	TRIP6, OIP1
Domain Architecture
Description	Thyroid receptor-interacting protein 6 (TRIP6) (OPA-interacting protein 1) (Zyxin-related protein 1) (ZRP-1).

CUTL2_MOUSE
θ value	1.06291 (rank : 309)	NC score	0.174095 (rank : 337)
Query Neighborhood Hits	349	Target Neighborhood Hits	771	Shared Neighborhood Hits	179
SwissProt Accessions	P70298	Gene names	Cutl2
Domain Architecture
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

ISL2_HUMAN
θ value	1.06291 (rank : 310)	NC score	0.422885 (rank : 270)
Query Neighborhood Hits	349	Target Neighborhood Hits	435	Shared Neighborhood Hits	314
SwissProt Accessions	Q96A47	Gene names	ISL2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

PO3F1_HUMAN
θ value	1.06291 (rank : 311)	NC score	0.306362 (rank : 308)
Query Neighborhood Hits	349	Target Neighborhood Hits	256	Shared Neighborhood Hits	245
SwissProt Accessions	Q03052	Gene names	POU3F1, OCT6, OTF6
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

PO3F1_MOUSE
θ value	1.06291 (rank : 312)	NC score	0.309341 (rank : 307)
Query Neighborhood Hits	349	Target Neighborhood Hits	261	Shared Neighborhood Hits	245
SwissProt Accessions	P21952	Gene names	Pou3f1, Oct6, Otf-6, Otf6, Scip
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

PO4F1_HUMAN
θ value	1.06291 (rank : 313)	NC score	0.366166 (rank : 291)
Query Neighborhood Hits	349	Target Neighborhood Hits	342	Shared Neighborhood Hits	295
SwissProt Accessions	Q01851, Q14986, Q15318	Gene names	POU4F1, BRN3A, RDC1
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Oct-T1) (Homeobox/POU domain protein RDC-1).

PO4F1_MOUSE
θ value	1.06291 (rank : 314)	NC score	0.369663 (rank : 290)
Query Neighborhood Hits	349	Target Neighborhood Hits	345	Shared Neighborhood Hits	295
SwissProt Accessions	P17208	Gene names	Pou4f1, Brn-3, Brn3, Brn3a
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Brn-3.0).

TGIF_MOUSE
θ value	1.06291 (rank : 315)	NC score	0.091270 (rank : 369)
Query Neighborhood Hits	349	Target Neighborhood Hits	125	Shared Neighborhood Hits	66
SwissProt Accessions	P70284, Q921F9, Q99JS3	Gene names	Tgif
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

ISL2_MOUSE
θ value	1.38821 (rank : 316)	NC score	0.422973 (rank : 269)
Query Neighborhood Hits	349	Target Neighborhood Hits	426	Shared Neighborhood Hits	312
SwissProt Accessions	Q9CXV0	Gene names	Isl2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

ONEC2_HUMAN
θ value	1.38821 (rank : 317)	NC score	0.108536 (rank : 350)
Query Neighborhood Hits	349	Target Neighborhood Hits	115	Shared Neighborhood Hits	89
SwissProt Accessions	O95948	Gene names	ONECUT2
Domain Architecture
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

PO4F3_HUMAN
θ value	1.38821 (rank : 318)	NC score	0.361665 (rank : 295)
Query Neighborhood Hits	349	Target Neighborhood Hits	307	Shared Neighborhood Hits	290
SwissProt Accessions	Q15319, O60557	Gene names	POU4F3, BRN3C
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

PO4F3_MOUSE
θ value	1.38821 (rank : 319)	NC score	0.362045 (rank : 294)
Query Neighborhood Hits	349	Target Neighborhood Hits	311	Shared Neighborhood Hits	290
SwissProt Accessions	Q63955	Gene names	Pou4f3, Brn-3c, Brn3c
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

HMBX1_HUMAN
θ value	1.81305 (rank : 320)	NC score	0.200378 (rank : 335)
Query Neighborhood Hits	349	Target Neighborhood Hits	118	Shared Neighborhood Hits	102
SwissProt Accessions	Q6NT76, Q3Y6P1, Q96GS5, Q9H701	Gene names	HMBOX1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

ONEC2_MOUSE
θ value	1.81305 (rank : 321)	NC score	0.104959 (rank : 356)
Query Neighborhood Hits	349	Target Neighborhood Hits	123	Shared Neighborhood Hits	89
SwissProt Accessions	Q6XBJ3	Gene names	Onecut2, Oc2
Domain Architecture	No domain graphic available
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

PIT1_MOUSE
θ value	2.36792 (rank : 322)	NC score	0.404776 (rank : 276)
Query Neighborhood Hits	349	Target Neighborhood Hits	313	Shared Neighborhood Hits	292
SwissProt Accessions	Q00286	Gene names	Pou1f1, Pit-1, Pit1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

PO3F2_HUMAN
θ value	2.36792 (rank : 323)	NC score	0.335206 (rank : 300)
Query Neighborhood Hits	349	Target Neighborhood Hits	308	Shared Neighborhood Hits	281
SwissProt Accessions	P20265, Q14960, Q86V54, Q9UJL0	Gene names	POU3F2, BRN2, OCT7, OTF7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

PO3F2_MOUSE
θ value	2.36792 (rank : 324)	NC score	0.335218 (rank : 299)
Query Neighborhood Hits	349	Target Neighborhood Hits	313	Shared Neighborhood Hits	281
SwissProt Accessions	P31360	Gene names	Pou3f2, Brn-2, Brn2, Otf7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

HMBX1_MOUSE
θ value	3.0926 (rank : 325)	NC score	0.200103 (rank : 336)
Query Neighborhood Hits	349	Target Neighborhood Hits	117	Shared Neighborhood Hits	102
SwissProt Accessions	Q8BJA3, Q80WC2, Q8BWE7, Q99LV1	Gene names	Hmbox1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

IRX3_HUMAN
θ value	3.0926 (rank : 326)	NC score	0.258436 (rank : 318)
Query Neighborhood Hits	349	Target Neighborhood Hits	342	Shared Neighborhood Hits	211
SwissProt Accessions	P78415, Q7Z4A4, Q7Z4A5, Q8IVC6	Gene names	IRX3, IRXB1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

IRX3_MOUSE
θ value	3.0926 (rank : 327)	NC score	0.259921 (rank : 317)
Query Neighborhood Hits	349	Target Neighborhood Hits	303	Shared Neighborhood Hits	211
SwissProt Accessions	P81067	Gene names	Irx3, Irxb1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

PO3F3_HUMAN
θ value	3.0926 (rank : 328)	NC score	0.339593 (rank : 296)
Query Neighborhood Hits	349	Target Neighborhood Hits	311	Shared Neighborhood Hits	278
SwissProt Accessions	P20264, P78379	Gene names	POU3F3, BRN1, OTF8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

PO3F3_MOUSE
θ value	3.0926 (rank : 329)	NC score	0.339585 (rank : 297)
Query Neighborhood Hits	349	Target Neighborhood Hits	308	Shared Neighborhood Hits	278
SwissProt Accessions	P31361	Gene names	Pou3f3, Brn-1, Brn1, Otf8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

ADNP_HUMAN
θ value	4.03905 (rank : 330)	NC score	0.026574 (rank : 385)
Query Neighborhood Hits	349	Target Neighborhood Hits	265	Shared Neighborhood Hits	39
SwissProt Accessions	Q9H2P0, O94881, Q9UG34	Gene names	ADNP, KIAA0784
Domain Architecture
Description	Activity-dependent neuroprotector (Activity-dependent neuroprotective protein).

ADNP_MOUSE
θ value	4.03905 (rank : 331)	NC score	0.033646 (rank : 384)
Query Neighborhood Hits	349	Target Neighborhood Hits	232	Shared Neighborhood Hits	45
SwissProt Accessions	Q9Z103	Gene names	Adnp
Domain Architecture
Description	Activity-dependent neuroprotector (Activity-dependent neuroprotective protein).

PO4F2_HUMAN
θ value	4.03905 (rank : 332)	NC score	0.363560 (rank : 293)
Query Neighborhood Hits	349	Target Neighborhood Hits	310	Shared Neighborhood Hits	291
SwissProt Accessions	Q12837, Q13883, Q14987	Gene names	POU4F2, BRN3B
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B).

PO4F2_MOUSE
θ value	4.03905 (rank : 333)	NC score	0.364601 (rank : 292)
Query Neighborhood Hits	349	Target Neighborhood Hits	312	Shared Neighborhood Hits	291
SwissProt Accessions	Q63934, Q63954	Gene names	Pou4f2, Brn3b
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B) (Brn-3.2).

TF2LX_HUMAN
θ value	4.03905 (rank : 334)	NC score	0.103377 (rank : 358)
Query Neighborhood Hits	349	Target Neighborhood Hits	108	Shared Neighborhood Hits	76
SwissProt Accessions	Q8IUE1	Gene names	TGIF2LX, TGIFLX
Domain Architecture
Description	Homeobox protein TGIF2LX (TGFB-induced factor 2-like protein, X- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the X).

TJAP1_HUMAN
θ value	4.03905 (rank : 335)	NC score	0.010611 (rank : 386)
Query Neighborhood Hits	349	Target Neighborhood Hits	214	Shared Neighborhood Hits	8
SwissProt Accessions	Q5JTD0, Q5JTD1, Q5JWW1, Q68DB2, Q6P2P3, Q9H7V7	Gene names	TJAP1, PILT, TJP4
Domain Architecture	No domain graphic available
Description	Tight junction-associated protein 1 (Tight junction protein 4) (Protein incorporated later into tight junctions).

TSH3_HUMAN
θ value	4.03905 (rank : 336)	NC score	0.008078 (rank : 388)
Query Neighborhood Hits	349	Target Neighborhood Hits	564	Shared Neighborhood Hits	17
SwissProt Accessions	Q63HK5, Q9H0G6, Q9P254	Gene names	TSHZ3, KIAA1474, TSH3, ZNF537
Domain Architecture	No domain graphic available
Description	Teashirt homolog 3 (Zinc finger protein 537).

TSH3_MOUSE
θ value	4.03905 (rank : 337)	NC score	0.007712 (rank : 389)
Query Neighborhood Hits	349	Target Neighborhood Hits	590	Shared Neighborhood Hits	16
SwissProt Accessions	Q8CGV9, Q5DTX4	Gene names	Tshz3, Kiaa1474, Tsh3, Zfp537, Znf537
Domain Architecture	No domain graphic available
Description	Teashirt homolog 3 (Zinc finger protein 537).

NUMA1_HUMAN
θ value	5.27518 (rank : 338)	NC score	-0.012074 (rank : 391)
Query Neighborhood Hits	349	Target Neighborhood Hits	1523	Shared Neighborhood Hits	7
SwissProt Accessions	Q14980, Q14981	Gene names	NUMA1, NUMA
Domain Architecture	No domain graphic available
Description	Nuclear mitotic apparatus protein 1 (NuMA protein) (SP-H antigen).

SIX5_HUMAN
θ value	5.27518 (rank : 339)	NC score	0.301462 (rank : 309)
Query Neighborhood Hits	349	Target Neighborhood Hits	386	Shared Neighborhood Hits	242
SwissProt Accessions	Q8N196	Gene names	SIX5, DMAHP
Domain Architecture	No domain graphic available
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein).

SIX5_MOUSE
θ value	5.27518 (rank : 340)	NC score	0.242101 (rank : 320)
Query Neighborhood Hits	349	Target Neighborhood Hits	354	Shared Neighborhood Hits	209
SwissProt Accessions	P70178	Gene names	Six5, Dmahp
Domain Architecture
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein homolog).

ZHX1_HUMAN
θ value	5.27518 (rank : 341)	NC score	0.202214 (rank : 334)
Query Neighborhood Hits	349	Target Neighborhood Hits	307	Shared Neighborhood Hits	199
SwissProt Accessions	Q9UKY1, Q8IWD8	Gene names	ZHX1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

CPNE2_MOUSE
θ value	6.88961 (rank : 342)	NC score	0.000419 (rank : 390)
Query Neighborhood Hits	349	Target Neighborhood Hits	82	Shared Neighborhood Hits	3
SwissProt Accessions	P59108, Q8K1D7	Gene names	Cpne2
Domain Architecture
Description	Copine-2 (Copine II).

IRX4_HUMAN
θ value	6.88961 (rank : 343)	NC score	0.282718 (rank : 316)
Query Neighborhood Hits	349	Target Neighborhood Hits	276	Shared Neighborhood Hits	247
SwissProt Accessions	P78413, Q9UHR2	Gene names	IRX4, IRXA3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

IRX4_MOUSE
θ value	6.88961 (rank : 344)	NC score	0.285998 (rank : 315)
Query Neighborhood Hits	349	Target Neighborhood Hits	286	Shared Neighborhood Hits	246
SwissProt Accessions	Q9QY61	Gene names	Irx4, Irxa3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

PKNX2_HUMAN
θ value	6.88961 (rank : 345)	NC score	0.094210 (rank : 361)
Query Neighborhood Hits	349	Target Neighborhood Hits	133	Shared Neighborhood Hits	86
SwissProt Accessions	Q96KN3, Q63HL6, Q86XD1	Gene names	PKNOX2, PREP2
Domain Architecture
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

PKNX2_MOUSE
θ value	6.88961 (rank : 346)	NC score	0.095638 (rank : 360)
Query Neighborhood Hits	349	Target Neighborhood Hits	197	Shared Neighborhood Hits	88
SwissProt Accessions	Q8BG99, Q8R4B0	Gene names	Pknox2, Prep2
Domain Architecture	No domain graphic available
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

IRX6_HUMAN
θ value	8.99809 (rank : 347)	NC score	0.287325 (rank : 314)
Query Neighborhood Hits	349	Target Neighborhood Hits	262	Shared Neighborhood Hits	231
SwissProt Accessions	P78412, Q7Z2K0	Gene names	IRX6, IRX7, IRXB3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

PO3F4_HUMAN
θ value	8.99809 (rank : 348)	NC score	0.287632 (rank : 313)
Query Neighborhood Hits	349	Target Neighborhood Hits	297	Shared Neighborhood Hits	246
SwissProt Accessions	P49335, Q5H9G9, Q99410	Gene names	POU3F4, BRN4, OTF9
Domain Architecture
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

PO3F4_MOUSE
θ value	8.99809 (rank : 349)	NC score	0.289173 (rank : 312)
Query Neighborhood Hits	349	Target Neighborhood Hits	281	Shared Neighborhood Hits	246
SwissProt Accessions	P62515, P25216	Gene names	Pou3f4, Brn-4, Brn4, Otf9
Domain Architecture	No domain graphic available
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

DUX2_HUMAN
θ value	θ > 10 (rank : 350)	NC score	0.504406 (rank : 256)
Query Neighborhood Hits	349	Target Neighborhood Hits	173	Shared Neighborhood Hits	170
SwissProt Accessions	O75505	Gene names	DUX2
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 2.

HNF6_HUMAN
θ value	θ > 10 (rank : 351)	NC score	0.104050 (rank : 357)
Query Neighborhood Hits	349	Target Neighborhood Hits	127	Shared Neighborhood Hits	96
SwissProt Accessions	Q9UBC0, Q99744, Q9UMR6	Gene names	ONECUT1, HNF6, HNF6A
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

HNF6_MOUSE
θ value	θ > 10 (rank : 352)	NC score	0.107864 (rank : 351)
Query Neighborhood Hits	349	Target Neighborhood Hits	124	Shared Neighborhood Hits	98
SwissProt Accessions	O08755	Gene names	Onecut1, Hnf6, Hnf6a
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

HOMEZ_HUMAN
θ value	θ > 10 (rank : 353)	NC score	0.056724 (rank : 382)
Query Neighborhood Hits	349	Target Neighborhood Hits	110	Shared Neighborhood Hits	44
SwissProt Accessions	Q8IX15, Q6P049, Q86XB6, Q9P2A5	Gene names	HOMEZ, KIAA1443
Domain Architecture
Description	Homeobox and leucine zipper protein Homez (Homeodomain leucine zipper- containing factor).

HOP_HUMAN
θ value	θ > 10 (rank : 354)	NC score	0.309389 (rank : 306)
Query Neighborhood Hits	349	Target Neighborhood Hits	107	Shared Neighborhood Hits	98
SwissProt Accessions	Q9BPY8, Q8N0V6, Q96CI1	Gene names	HOP, HOD, LAGY, NECC1, OB1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Lung cancer-associated Y protein) (Odd homeobox protein 1) (Not expressed in choriocarcinoma protein 1).

HOP_MOUSE
θ value	θ > 10 (rank : 355)	NC score	0.300766 (rank : 310)
Query Neighborhood Hits	349	Target Neighborhood Hits	102	Shared Neighborhood Hits	92
SwissProt Accessions	Q8R1H0, Q8C1N5, Q8CJ22	Gene names	Hop, Hod, Ob1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Homeobox-only protein) (Odd homeobox protein 1) (mOB1).

IRX1_HUMAN
θ value	θ > 10 (rank : 356)	NC score	0.241120 (rank : 321)
Query Neighborhood Hits	349	Target Neighborhood Hits	285	Shared Neighborhood Hits	217
SwissProt Accessions	P78414, Q7Z2F8, Q8N312	Gene names	IRX1, IRXA1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

IRX1_MOUSE
θ value	θ > 10 (rank : 357)	NC score	0.236510 (rank : 322)
Query Neighborhood Hits	349	Target Neighborhood Hits	269	Shared Neighborhood Hits	214
SwissProt Accessions	P81068, O55120, Q9JLL6	Gene names	Irx1, Irxa1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

IRX2_HUMAN
θ value	θ > 10 (rank : 358)	NC score	0.256048 (rank : 319)
Query Neighborhood Hits	349	Target Neighborhood Hits	358	Shared Neighborhood Hits	219
SwissProt Accessions	Q9BZI1, Q7Z2I7	Gene names	IRX2, IRXA2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

IRX2_MOUSE
θ value	θ > 10 (rank : 359)	NC score	0.230634 (rank : 324)
Query Neighborhood Hits	349	Target Neighborhood Hits	264	Shared Neighborhood Hits	207
SwissProt Accessions	P81066, O55121, Q9ERN1	Gene names	Irx2, Irxa2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

IRX5_HUMAN
θ value	θ > 10 (rank : 360)	NC score	0.232806 (rank : 323)
Query Neighborhood Hits	349	Target Neighborhood Hits	362	Shared Neighborhood Hits	206
SwissProt Accessions	P78411, P78416, Q7Z2E1	Gene names	IRX5, IRX2A, IRXB2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2) (IRX-2A).

IRX5_MOUSE
θ value	θ > 10 (rank : 361)	NC score	0.223932 (rank : 326)
Query Neighborhood Hits	349	Target Neighborhood Hits	324	Shared Neighborhood Hits	204
SwissProt Accessions	Q9JKQ4, Q80WV4, Q9JLL5	Gene names	Irx5, Irxb2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2).

IRX6_MOUSE
θ value	θ > 10 (rank : 362)	NC score	0.299111 (rank : 311)
Query Neighborhood Hits	349	Target Neighborhood Hits	256	Shared Neighborhood Hits	228
SwissProt Accessions	Q9ER75	Gene names	Irx6, Irxb3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

LMO3_HUMAN
θ value	θ > 10 (rank : 363)	NC score	0.088980 (rank : 372)
Query Neighborhood Hits	349	Target Neighborhood Hits	111	Shared Neighborhood Hits	25
SwissProt Accessions	Q8TAP4, Q8N974, Q9UDD5	Gene names	LMO3, RBTN3, RHOM3
Domain Architecture
Description	LIM-only protein 3 (Neuronal-specific transcription factor DAT1) (Rhombotin-3).

LMO3_MOUSE
θ value	θ > 10 (rank : 364)	NC score	0.088980 (rank : 373)
Query Neighborhood Hits	349	Target Neighborhood Hits	111	Shared Neighborhood Hits	25
SwissProt Accessions	Q8BZL8	Gene names	Lmo3
Domain Architecture
Description	LIM-only protein 3 (Neuronal-specific transcription factor DAT1).

LMO4_HUMAN
θ value	θ > 10 (rank : 365)	NC score	0.091421 (rank : 367)
Query Neighborhood Hits	349	Target Neighborhood Hits	111	Shared Neighborhood Hits	25
SwissProt Accessions	P61968, O00158, O88894	Gene names	LMO4
Domain Architecture
Description	LIM domain transcription factor LMO4 (LIM domain only protein 4) (LMO- 4) (Breast tumor autoantigen).

LMO4_MOUSE
θ value	θ > 10 (rank : 366)	NC score	0.091421 (rank : 368)
Query Neighborhood Hits	349	Target Neighborhood Hits	111	Shared Neighborhood Hits	25
SwissProt Accessions	P61969, O00158, O88894	Gene names	Lmo4
Domain Architecture
Description	LIM domain transcription factor LMO4 (LIM domain only protein 4) (LMO- 4) (Breast tumor autoantigen).

PAX1_HUMAN
θ value	θ > 10 (rank : 367)	NC score	0.076585 (rank : 380)
Query Neighborhood Hits	349	Target Neighborhood Hits	72	Shared Neighborhood Hits	12
SwissProt Accessions	P15863, Q642X9, Q6NTC0, Q9Y558	Gene names	PAX1, HUP48
Domain Architecture
Description	Paired box protein Pax-1 (HUP48).

PAX1_MOUSE
θ value	θ > 10 (rank : 368)	NC score	0.076162 (rank : 381)
Query Neighborhood Hits	349	Target Neighborhood Hits	69	Shared Neighborhood Hits	10
SwissProt Accessions	P09084, Q9R2B1	Gene names	Pax1, Pax-1
Domain Architecture
Description	Paired box protein Pax-1.

PAX2_HUMAN
θ value	θ > 10 (rank : 369)	NC score	0.118826 (rank : 349)
Query Neighborhood Hits	349	Target Neighborhood Hits	84	Shared Neighborhood Hits	53
SwissProt Accessions	Q02962, Q15105, Q15110, Q15837	Gene names	PAX2
Domain Architecture
Description	Paired box protein Pax-2.

PAX2_MOUSE
θ value	θ > 10 (rank : 370)	NC score	0.119373 (rank : 348)
Query Neighborhood Hits	349	Target Neighborhood Hits	86	Shared Neighborhood Hits	53
SwissProt Accessions	P32114	Gene names	Pax2, Pax-2
Domain Architecture
Description	Paired box protein Pax-2.

PAX5_HUMAN
θ value	θ > 10 (rank : 371)	NC score	0.106709 (rank : 354)
Query Neighborhood Hits	349	Target Neighborhood Hits	106	Shared Neighborhood Hits	46
SwissProt Accessions	Q02548, O75933	Gene names	PAX5
Domain Architecture
Description	Paired box protein Pax-5 (B-cell-specific transcription factor) (BSAP).

PAX5_MOUSE
θ value	θ > 10 (rank : 372)	NC score	0.106316 (rank : 355)
Query Neighborhood Hits	349	Target Neighborhood Hits	106	Shared Neighborhood Hits	46
SwissProt Accessions	Q02650	Gene names	Pax5, Pax-5
Domain Architecture
Description	Paired box protein Pax-5 (B-cell-specific transcription factor) (BSAP).

PAX8_HUMAN
θ value	θ > 10 (rank : 373)	NC score	0.088073 (rank : 374)
Query Neighborhood Hits	349	Target Neighborhood Hits	56	Shared Neighborhood Hits	21
SwissProt Accessions	Q06710, Q09155, Q16337, Q16338, Q16339, Q96J49	Gene names	PAX8
Domain Architecture
Description	Paired box protein Pax-8.

PAX8_MOUSE
θ value	θ > 10 (rank : 374)	NC score	0.098670 (rank : 359)
Query Neighborhood Hits	349	Target Neighborhood Hits	62	Shared Neighborhood Hits	28
SwissProt Accessions	Q00288, P97342	Gene names	Pax8, Pax-8
Domain Architecture
Description	Paired box protein Pax-8.

PAX9_HUMAN
θ value	θ > 10 (rank : 375)	NC score	0.081360 (rank : 378)
Query Neighborhood Hits	349	Target Neighborhood Hits	92	Shared Neighborhood Hits	14
SwissProt Accessions	P55771, Q99582, Q9UQR4	Gene names	PAX9
Domain Architecture
Description	Paired box protein Pax-9.

PAX9_MOUSE
θ value	θ > 10 (rank : 376)	NC score	0.082390 (rank : 377)
Query Neighborhood Hits	349	Target Neighborhood Hits	67	Shared Neighborhood Hits	11
SwissProt Accessions	P47242	Gene names	Pax9, Pax-9
Domain Architecture
Description	Paired box protein Pax-9.

PKNX1_HUMAN
θ value	θ > 10 (rank : 377)	NC score	0.092248 (rank : 365)
Query Neighborhood Hits	349	Target Neighborhood Hits	101	Shared Neighborhood Hits	79
SwissProt Accessions	P55347, O00528, Q8IWT7	Gene names	PKNOX1, PREP1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1) (Homeobox protein PREP-1).

PKNX1_MOUSE
θ value	θ > 10 (rank : 378)	NC score	0.092514 (rank : 363)
Query Neighborhood Hits	349	Target Neighborhood Hits	103	Shared Neighborhood Hits	80
SwissProt Accessions	O70477	Gene names	Pknox1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1).

RBTN1_HUMAN
θ value	θ > 10 (rank : 379)	NC score	0.089022 (rank : 371)
Query Neighborhood Hits	349	Target Neighborhood Hits	110	Shared Neighborhood Hits	25
SwissProt Accessions	P25800, Q4VBC5	Gene names	LMO1, RBTN1, RHOM1, TTG1
Domain Architecture
Description	Rhombotin-1 (Cysteine-rich protein TTG-1) (T-cell translocation protein 1) (LIM-only protein 1).

RBTN1_MOUSE
θ value	θ > 10 (rank : 380)	NC score	0.089032 (rank : 370)
Query Neighborhood Hits	349	Target Neighborhood Hits	109	Shared Neighborhood Hits	25
SwissProt Accessions	Q924W9	Gene names	Lmo1, Rbtn1, Rhom1, Ttg1
Domain Architecture	No domain graphic available
Description	Rhombotin-1 (Cysteine-rich protein TTG-1) (LIM-only protein 1).

RBTN2_HUMAN
θ value	θ > 10 (rank : 381)	NC score	0.084842 (rank : 376)
Query Neighborhood Hits	349	Target Neighborhood Hits	114	Shared Neighborhood Hits	25
SwissProt Accessions	P25791, Q9HD58	Gene names	LMO2, RBTN2, RHOM2, TTG2
Domain Architecture
Description	Rhombotin-2 (Cysteine-rich protein TTG-2) (T-cell translocation protein 2) (LIM-only protein 2).

RBTN2_MOUSE
θ value	θ > 10 (rank : 382)	NC score	0.084845 (rank : 375)
Query Neighborhood Hits	349	Target Neighborhood Hits	114	Shared Neighborhood Hits	25
SwissProt Accessions	P25801	Gene names	Lmo2, Rbtn-2, Rbtn2, Rhom-2
Domain Architecture
Description	Rhombotin-2 (Cysteine-rich protein TTG-2) (T-cell translocation protein 2) (LIM-only protein 2).

RHOX5_MOUSE
θ value	θ > 10 (rank : 383)	NC score	0.224546 (rank : 325)
Query Neighborhood Hits	349	Target Neighborhood Hits	69	Shared Neighborhood Hits	54
SwissProt Accessions	P52651	Gene names	Rhox5, Pem
Domain Architecture	No domain graphic available
Description	Homeobox protein Rhox5 (Reproductive homeobox on chromosome X 5) (Homeobox protein Pem) (Placenta and embryonic expression protein).

SPRM1_HUMAN
θ value	θ > 10 (rank : 384)	NC score	0.107150 (rank : 352)
Query Neighborhood Hits	349	Target Neighborhood Hits	72	Shared Neighborhood Hits	66
SwissProt Accessions	Q8N7G0, Q8N748	Gene names	SPRM1
Domain Architecture
Description	Sperm 1 POU-domain transcription factor (SPRM-1).

SPRM1_MOUSE
θ value	θ > 10 (rank : 385)	NC score	0.106963 (rank : 353)
Query Neighborhood Hits	349	Target Neighborhood Hits	73	Shared Neighborhood Hits	63
SwissProt Accessions	Q9DAC9	Gene names	Sprm1
Domain Architecture
Description	Sperm 1 POU-domain transcription factor (SPRM-1).

TF2LY_HUMAN
θ value	θ > 10 (rank : 386)	NC score	0.092426 (rank : 364)
Query Neighborhood Hits	349	Target Neighborhood Hits	90	Shared Neighborhood Hits	70
SwissProt Accessions	Q8IUE0	Gene names	TGIF2LY, TGIFLY
Domain Architecture
Description	Homeobox protein TGIF2LY (TGFB-induced factor 2-like protein, Y- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the Y).

TGIF2_HUMAN
θ value	θ > 10 (rank : 387)	NC score	0.081182 (rank : 379)
Query Neighborhood Hits	349	Target Neighborhood Hits	94	Shared Neighborhood Hits	62
SwissProt Accessions	Q9GZN2	Gene names	TGIF2
Domain Architecture
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

TGIF2_MOUSE
θ value	θ > 10 (rank : 388)	NC score	0.091682 (rank : 366)
Query Neighborhood Hits	349	Target Neighborhood Hits	127	Shared Neighborhood Hits	70
SwissProt Accessions	Q8C0Y1	Gene names	Tgif2
Domain Architecture	No domain graphic available
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

ZHX1_MOUSE
θ value	θ > 10 (rank : 389)	NC score	0.202797 (rank : 333)
Query Neighborhood Hits	349	Target Neighborhood Hits	334	Shared Neighborhood Hits	204
SwissProt Accessions	P70121, Q8BQ68, Q8C6T4, Q8CJG3	Gene names	Zhx1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

ZHX3_HUMAN
θ value	θ > 10 (rank : 390)	NC score	0.210347 (rank : 331)
Query Neighborhood Hits	349	Target Neighborhood Hits	331	Shared Neighborhood Hits	212
SwissProt Accessions	Q9H4I2, O43145	Gene names	ZHX3, KIAA0395, TIX1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

ZHX3_MOUSE
θ value	θ > 10 (rank : 391)	NC score	0.211010 (rank : 329)
Query Neighborhood Hits	349	Target Neighborhood Hits	321	Shared Neighborhood Hits	214
SwissProt Accessions	Q8C0Q2, Q80U14	Gene names	Zhx3, Kiaa0395, Tix1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

Hits sorted by NC score

LBX1_MOUSE
NC score	0.999962 (rank : 1)	θ value	5.28454e-109 (rank : 2)
Query Neighborhood Hits	349	Target Neighborhood Hits	349	Shared Neighborhood Hits	349
SwissProt Accessions	P52955	Gene names	Lbx1, Lbx1h
Domain Architecture
Description	Transcription factor LBX1.

LBX1_HUMAN
NC score	0.998120 (rank : 2)	θ value	4.31301e-119 (rank : 1)
Query Neighborhood Hits	349	Target Neighborhood Hits	357	Shared Neighborhood Hits	344
SwissProt Accessions	P52954	Gene names	LBX1
Domain Architecture
Description	Transcription factor LBX1.

BARX2_MOUSE
NC score	0.948293 (rank : 3)	θ value	2.69671e-12 (rank : 20)
Query Neighborhood Hits	349	Target Neighborhood Hits	335	Shared Neighborhood Hits	323
SwissProt Accessions	O08686	Gene names	Barx2
Domain Architecture
Description	Homeobox protein BarH-like 2.

BSH_MOUSE
NC score	0.948086 (rank : 4)	θ value	2.98157e-11 (rank : 37)
Query Neighborhood Hits	349	Target Neighborhood Hits	349	Shared Neighborhood Hits	323
SwissProt Accessions	Q810B3	Gene names	Bsx
Domain Architecture	No domain graphic available
Description	Brain-specific homeobox protein homolog.

NKX31_HUMAN
NC score	0.947994 (rank : 5)	θ value	7.84624e-12 (rank : 25)
Query Neighborhood Hits	349	Target Neighborhood Hits	331	Shared Neighborhood Hits	313
SwissProt Accessions	Q99801, O15465, Q9H2P4, Q9H2P5, Q9H2P6, Q9H2P7, Q9HBG0	Gene names	NKX3-1, NKX3.1, NKX3A
Domain Architecture
Description	Homeobox protein Nkx-3.1.

BARX1_HUMAN
NC score	0.946205 (rank : 6)	θ value	2.69671e-12 (rank : 19)
Query Neighborhood Hits	349	Target Neighborhood Hits	326	Shared Neighborhood Hits	314
SwissProt Accessions	Q9HBU1	Gene names	BARX1
Domain Architecture
Description	Homeobox protein BarH-like 1.

BARX2_HUMAN
NC score	0.945479 (rank : 7)	θ value	9.26847e-13 (rank : 14)
Query Neighborhood Hits	349	Target Neighborhood Hits	387	Shared Neighborhood Hits	324
SwissProt Accessions	Q9UMQ3, O43518	Gene names	BARX2
Domain Architecture
Description	Homeobox protein BarH-like 2.

BARX1_MOUSE
NC score	0.944854 (rank : 8)	θ value	2.0648e-12 (rank : 18)
Query Neighborhood Hits	349	Target Neighborhood Hits	324	Shared Neighborhood Hits	314
SwissProt Accessions	Q9ER42, O09066, P70159, Q9ERV2	Gene names	Barx1
Domain Architecture
Description	Homeobox protein BarH-like 1.

HMX2_MOUSE
NC score	0.941946 (rank : 9)	θ value	2.69671e-12 (rank : 23)
Query Neighborhood Hits	349	Target Neighborhood Hits	354	Shared Neighborhood Hits	320
SwissProt Accessions	P43687, Q8R1Q2	Gene names	Hmx2, Nkx-5.2, Nkx5-2
Domain Architecture
Description	Homeobox protein HMX2 (Homeobox protein Nkx-5.2).

HLXB9_HUMAN
NC score	0.940564 (rank : 10)	θ value	3.29651e-10 (rank : 53)
Query Neighborhood Hits	349	Target Neighborhood Hits	336	Shared Neighborhood Hits	318
SwissProt Accessions	P50219, Q9Y648	Gene names	HLXB9
Domain Architecture
Description	Homeobox protein HB9.

MSX3_MOUSE
NC score	0.940360 (rank : 11)	θ value	1.9326e-10 (rank : 50)
Query Neighborhood Hits	349	Target Neighborhood Hits	330	Shared Neighborhood Hits	310
SwissProt Accessions	P70354, P70246, Q03360, Q80W10	Gene names	Msx3, Msx-3
Domain Architecture
Description	Homeobox protein MSX-3.

HLXB9_MOUSE
NC score	0.940221 (rank : 12)	θ value	3.29651e-10 (rank : 54)
Query Neighborhood Hits	349	Target Neighborhood Hits	354	Shared Neighborhood Hits	319
SwissProt Accessions	Q9QZW9	Gene names	Hlxb9
Domain Architecture
Description	Homeobox protein HB9.

NKX31_MOUSE
NC score	0.940013 (rank : 13)	θ value	3.89403e-11 (rank : 38)
Query Neighborhood Hits	349	Target Neighborhood Hits	379	Shared Neighborhood Hits	312
SwissProt Accessions	P97436, O09087	Gene names	Nkx3-1, Nkx-3.1, Nkx3a
Domain Architecture
Description	Homeobox protein Nkx-3.1.

NKX12_MOUSE
NC score	0.939312 (rank : 14)	θ value	2.36244e-08 (rank : 138)
Query Neighborhood Hits	349	Target Neighborhood Hits	332	Shared Neighborhood Hits	304
SwissProt Accessions	P42580, Q9JHF2, Q9JKW5, Q9JKW6, Q9JKW9, Q9JKX0, Q9JKX1	Gene names	Nkx1-2, Nkx1.1, Sax1
Domain Architecture
Description	NK1 transcription factor-related protein 2 (Homeobox protein SAX-1) (NKX-1.1).

TLX2_MOUSE
NC score	0.938506 (rank : 15)	θ value	1.52774e-15 (rank : 6)
Query Neighborhood Hits	349	Target Neighborhood Hits	336	Shared Neighborhood Hits	310
SwissProt Accessions	Q61663	Gene names	Tlx2, Hox11l1, Tlx1l1
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Homeobox TLX-2) (PMUR10F).

BARH1_MOUSE
NC score	0.938378 (rank : 16)	θ value	3.18553e-13 (rank : 13)
Query Neighborhood Hits	349	Target Neighborhood Hits	350	Shared Neighborhood Hits	321
SwissProt Accessions	P63157, Q9JK26	Gene names	Barhl1, Bhx1, Mbh2
Domain Architecture	No domain graphic available
Description	BarH-like 1 homeobox protein (Bar-class homeodomain protein MBH2) (BarH-related homeobox protein 1).

TLX2_HUMAN
NC score	0.937331 (rank : 17)	θ value	1.52774e-15 (rank : 5)
Query Neighborhood Hits	349	Target Neighborhood Hits	352	Shared Neighborhood Hits	311
SwissProt Accessions	O43763, Q9UQ48	Gene names	TLX2, HOX11L1, NCX
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Neural crest homeobox protein).

HMX3_MOUSE
NC score	0.937204 (rank : 18)	θ value	1.63604e-09 (rank : 81)
Query Neighborhood Hits	349	Target Neighborhood Hits	342	Shared Neighborhood Hits	317
SwissProt Accessions	P42581	Gene names	Hmx3, Nkx-5.1, Nkx5-1
Domain Architecture
Description	Homeobox protein HMX3 (Homeobox protein Nkx-5.1).

BARH1_HUMAN
NC score	0.937048 (rank : 19)	θ value	3.18553e-13 (rank : 12)
Query Neighborhood Hits	349	Target Neighborhood Hits	373	Shared Neighborhood Hits	321
SwissProt Accessions	Q9BZE3, Q9NY88	Gene names	BARHL1
Domain Architecture
Description	BarH-like 1 homeobox protein.

NKX28_MOUSE
NC score	0.936775 (rank : 20)	θ value	1.74796e-11 (rank : 34)
Query Neighborhood Hits	349	Target Neighborhood Hits	347	Shared Neighborhood Hits	327
SwissProt Accessions	O70584	Gene names	Nkx2-8, Nkx-2.9, Nkx2-9, Nkx2h
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H) (Homeobox protein Nkx-2.9).

NKX28_HUMAN
NC score	0.936722 (rank : 21)	θ value	8.67504e-11 (rank : 42)
Query Neighborhood Hits	349	Target Neighborhood Hits	352	Shared Neighborhood Hits	332
SwissProt Accessions	O15522	Gene names	NKX2-8, NKX-2.8, NKX2G, NKX2H
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H).

HHEX_MOUSE
NC score	0.936009 (rank : 22)	θ value	5.08577e-11 (rank : 40)
Query Neighborhood Hits	349	Target Neighborhood Hits	350	Shared Neighborhood Hits	307
SwissProt Accessions	P43120	Gene names	Hhex, Prhx
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

EMX1_HUMAN
NC score	0.935299 (rank : 23)	θ value	3.64472e-09 (rank : 94)
Query Neighborhood Hits	349	Target Neighborhood Hits	336	Shared Neighborhood Hits	317
SwissProt Accessions	Q04741, Q86XB0	Gene names	EMX1
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty spiracles- like protein 1).

HHEX_HUMAN
NC score	0.934327 (rank : 24)	θ value	5.08577e-11 (rank : 39)
Query Neighborhood Hits	349	Target Neighborhood Hits	358	Shared Neighborhood Hits	304
SwissProt Accessions	Q03014	Gene names	HHEX, HEX, PRH, PRHX
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

GBX1_HUMAN
NC score	0.933300 (rank : 25)	θ value	1.74796e-11 (rank : 31)
Query Neighborhood Hits	349	Target Neighborhood Hits	334	Shared Neighborhood Hits	300
SwissProt Accessions	Q14549	Gene names	GBX1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

BARH2_MOUSE
NC score	0.933196 (rank : 26)	θ value	1.2105e-12 (rank : 17)
Query Neighborhood Hits	349	Target Neighborhood Hits	397	Shared Neighborhood Hits	322
SwissProt Accessions	Q8VIB5, Q66L43	Gene names	Barhl2, Barh1, Mbh1
Domain Architecture	No domain graphic available
Description	BarH-like 2 homeobox protein (Bar-class homeodomain protein MBH1) (Homeobox protein B-H1).

NKX32_HUMAN
NC score	0.933173 (rank : 27)	θ value	1.74796e-11 (rank : 35)
Query Neighborhood Hits	349	Target Neighborhood Hits	323	Shared Neighborhood Hits	309
SwissProt Accessions	P78367	Gene names	BAPX1, NKX3B
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

NKX32_MOUSE
NC score	0.932498 (rank : 28)	θ value	1.74796e-11 (rank : 36)
Query Neighborhood Hits	349	Target Neighborhood Hits	326	Shared Neighborhood Hits	309
SwissProt Accessions	P97503	Gene names	Bapx1, Nkx-3.2, Nkx3-2, Nkx3b
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

DBX1_MOUSE
NC score	0.932118 (rank : 29)	θ value	6.87365e-08 (rank : 163)
Query Neighborhood Hits	349	Target Neighborhood Hits	346	Shared Neighborhood Hits	320
SwissProt Accessions	P52950	Gene names	Dbx1, Dbx
Domain Architecture
Description	Homeobox protein DBX1.

EMX2_HUMAN
NC score	0.932004 (rank : 30)	θ value	1.63604e-09 (rank : 79)
Query Neighborhood Hits	349	Target Neighborhood Hits	341	Shared Neighborhood Hits	321
SwissProt Accessions	Q04743, Q96NN8, Q9BQF4	Gene names	EMX2
Domain Architecture
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

EMX2_MOUSE
NC score	0.931955 (rank : 31)	θ value	1.63604e-09 (rank : 80)
Query Neighborhood Hits	349	Target Neighborhood Hits	340	Shared Neighborhood Hits	321
SwissProt Accessions	Q04744, Q80UE7	Gene names	Emx2, Emx-2
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

BARH2_HUMAN
NC score	0.931915 (rank : 32)	θ value	1.2105e-12 (rank : 16)
Query Neighborhood Hits	349	Target Neighborhood Hits	419	Shared Neighborhood Hits	322
SwissProt Accessions	Q9NY43, Q7Z4N7	Gene names	BARHL2
Domain Architecture
Description	BarH-like 2 homeobox protein.

GBX1_MOUSE
NC score	0.931820 (rank : 33)	θ value	1.74796e-11 (rank : 32)
Query Neighborhood Hits	349	Target Neighborhood Hits	350	Shared Neighborhood Hits	299
SwissProt Accessions	P82976, Q8CGW5	Gene names	Gbx1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

GBX2_HUMAN
NC score	0.931768 (rank : 34)	θ value	2.69671e-12 (rank : 21)
Query Neighborhood Hits	349	Target Neighborhood Hits	322	Shared Neighborhood Hits	304
SwissProt Accessions	P52951, O43833, Q53RX5, Q9Y5Y1	Gene names	GBX2
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2).

NKX25_HUMAN
NC score	0.931755 (rank : 35)	θ value	2.43908e-13 (rank : 11)
Query Neighborhood Hits	349	Target Neighborhood Hits	338	Shared Neighborhood Hits	321
SwissProt Accessions	P52952	Gene names	NKX2-5, CSX, NKX2.5, NKX2E
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

GBX2_MOUSE
NC score	0.931447 (rank : 36)	θ value	2.69671e-12 (rank : 22)
Query Neighborhood Hits	349	Target Neighborhood Hits	326	Shared Neighborhood Hits	302
SwissProt Accessions	P48031	Gene names	Gbx2, Mmoxa, Stra7
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2) (Homeobox protein STRA7).

MSX2_HUMAN
NC score	0.930741 (rank : 37)	θ value	8.67504e-11 (rank : 41)
Query Neighborhood Hits	349	Target Neighborhood Hits	337	Shared Neighborhood Hits	313
SwissProt Accessions	P35548	Gene names	MSX2, HOX8
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8).

MSX1_MOUSE
NC score	0.930530 (rank : 38)	θ value	2.52405e-10 (rank : 52)
Query Neighborhood Hits	349	Target Neighborhood Hits	322	Shared Neighborhood Hits	309
SwissProt Accessions	P13297	Gene names	Msx1, Hox7, Hox7.1
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7) (Hox- 7.1).

TLX3_MOUSE
NC score	0.930244 (rank : 39)	θ value	5.25075e-16 (rank : 3)
Query Neighborhood Hits	349	Target Neighborhood Hits	346	Shared Neighborhood Hits	315
SwissProt Accessions	O55144	Gene names	Tlx3, Hox11l2, Rnx, Tlx1l2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox TLX-3) (Homeobox protein Hox-11L2) (Respiratory neuron homeobox protein).

NKX25_MOUSE
NC score	0.929241 (rank : 40)	θ value	8.38298e-14 (rank : 9)
Query Neighborhood Hits	349	Target Neighborhood Hits	347	Shared Neighborhood Hits	316
SwissProt Accessions	P42582, P97335	Gene names	Nkx2-5, Csx, Nkx-2.5, Nkx2e
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

MSX1_HUMAN
NC score	0.929135 (rank : 41)	θ value	2.52405e-10 (rank : 51)
Query Neighborhood Hits	349	Target Neighborhood Hits	374	Shared Neighborhood Hits	310
SwissProt Accessions	P28360, Q96NY4	Gene names	MSX1, HOX7
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7).

MSX2_MOUSE
NC score	0.928530 (rank : 42)	θ value	1.74796e-11 (rank : 33)
Query Neighborhood Hits	349	Target Neighborhood Hits	345	Shared Neighborhood Hits	314
SwissProt Accessions	Q03358, Q63856	Gene names	Msx2, Hox-8.1, Msx-2
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8.1).

NKX23_HUMAN
NC score	0.928279 (rank : 43)	θ value	9.26847e-13 (rank : 15)
Query Neighborhood Hits	349	Target Neighborhood Hits	346	Shared Neighborhood Hits	326
SwissProt Accessions	Q8TAU0, Q9NYS6	Gene names	NKX2-3, NKX23, NKX2C
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NKX-2.3) (Homeobox protein NK-2 homolog C).

MEOX2_MOUSE
NC score	0.927994 (rank : 44)	θ value	1.63604e-09 (rank : 83)
Query Neighborhood Hits	349	Target Neighborhood Hits	341	Shared Neighborhood Hits	316
SwissProt Accessions	P32443, Q544T6	Gene names	Meox2, Gax, Mox-2, Mox2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2).

MEOX2_HUMAN
NC score	0.927896 (rank : 45)	θ value	1.63604e-09 (rank : 82)
Query Neighborhood Hits	349	Target Neighborhood Hits	340	Shared Neighborhood Hits	316
SwissProt Accessions	P50222, O75263, Q9UPL6	Gene names	MEOX2, GAX, MOX2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth arrest-specific homeobox).

NKX23_MOUSE
NC score	0.927387 (rank : 46)	θ value	1.42992e-13 (rank : 10)
Query Neighborhood Hits	349	Target Neighborhood Hits	340	Shared Neighborhood Hits	323
SwissProt Accessions	P97334, Q9QZ60, Q9WV67	Gene names	Nkx2-3, Nkx-2.3, Nkx2c
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NK-2 homolog C) (Nkx2-C) (Homeobox protein NK-2 homolog 3).

TLX1_MOUSE
NC score	0.927369 (rank : 47)	θ value	8.95645e-16 (rank : 4)
Query Neighborhood Hits	349	Target Neighborhood Hits	347	Shared Neighborhood Hits	311
SwissProt Accessions	P43345	Gene names	Tlx1, Hox11, Tlx-1
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (Homeobox TLX-1).

TLX1_HUMAN
NC score	0.927131 (rank : 48)	θ value	2.60593e-15 (rank : 8)
Query Neighborhood Hits	349	Target Neighborhood Hits	347	Shared Neighborhood Hits	311
SwissProt Accessions	P31314, O75699, Q9HCA0	Gene names	TLX1, HOX11, TCL3
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (TCL-3 proto-oncogene).

DLX6_HUMAN
NC score	0.927106 (rank : 49)	θ value	3.08544e-08 (rank : 146)
Query Neighborhood Hits	349	Target Neighborhood Hits	341	Shared Neighborhood Hits	329
SwissProt Accessions	P56179, Q3ZAR6, Q9UPL2	Gene names	DLX6
Domain Architecture
Description	Homeobox protein DLX-6.

MEOX1_HUMAN
NC score	0.926659 (rank : 50)	θ value	1.47974e-10 (rank : 48)
Query Neighborhood Hits	349	Target Neighborhood Hits	342	Shared Neighborhood Hits	318
SwissProt Accessions	P50221	Gene names	MEOX1, MOX1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

NKX61_HUMAN
NC score	0.926436 (rank : 51)	θ value	1.25267e-09 (rank : 78)
Query Neighborhood Hits	349	Target Neighborhood Hits	431	Shared Neighborhood Hits	317
SwissProt Accessions	P78426	Gene names	NKX6-1, NKX6A
Domain Architecture
Description	Homeobox protein Nkx-6.1.

NKX61_MOUSE
NC score	0.926081 (rank : 52)	θ value	9.59137e-10 (rank : 73)
Query Neighborhood Hits	349	Target Neighborhood Hits	439	Shared Neighborhood Hits	317
SwissProt Accessions	Q99MA9, Q9ERQ7	Gene names	Nkx6-1, Nkx6.1, Nkx6a
Domain Architecture
Description	Homeobox protein Nkx-6.1.

DLX4_MOUSE
NC score	0.925713 (rank : 53)	θ value	1.9326e-10 (rank : 49)
Query Neighborhood Hits	349	Target Neighborhood Hits	352	Shared Neighborhood Hits	317
SwissProt Accessions	P70436, Q3UM51, Q8R4I3	Gene names	Dlx4, Dlx7
Domain Architecture
Description	Homeobox protein DLX-4 (DLX-7).

NKX26_MOUSE
NC score	0.925432 (rank : 54)	θ value	6.21693e-09 (rank : 104)
Query Neighborhood Hits	349	Target Neighborhood Hits	343	Shared Neighborhood Hits	312
SwissProt Accessions	P43688	Gene names	Nkx2-6, Nkx-2.6, Nkx2f
Domain Architecture
Description	Homeobox protein Nkx-2.6 (Homeobox protein NK-2 homolog F).

MEOX1_MOUSE
NC score	0.925112 (rank : 55)	θ value	2.13673e-09 (rank : 90)
Query Neighborhood Hits	349	Target Neighborhood Hits	345	Shared Neighborhood Hits	314
SwissProt Accessions	P32442	Gene names	Meox1, Mox-1, Mox1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

TLX3_HUMAN
NC score	0.924893 (rank : 56)	θ value	1.52774e-15 (rank : 7)
Query Neighborhood Hits	349	Target Neighborhood Hits	403	Shared Neighborhood Hits	313
SwissProt Accessions	O43711, Q96AD3	Gene names	TLX3, HOX11L2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox protein Hox-11L2).

DLX4_HUMAN
NC score	0.924240 (rank : 57)	θ value	7.34386e-10 (rank : 66)
Query Neighborhood Hits	349	Target Neighborhood Hits	350	Shared Neighborhood Hits	318
SwissProt Accessions	Q92988, O60480, Q13265, Q6PJK0, Q9HBE0	Gene names	DLX4, BP1, DLX7, DLX8
Domain Architecture	No domain graphic available
Description	Homeobox protein DLX-4 (DLX-7) (DLX-8) (Beta protein 1).

HLX1_MOUSE
NC score	0.924058 (rank : 58)	θ value	3.52202e-12 (rank : 24)
Query Neighborhood Hits	349	Target Neighborhood Hits	362	Shared Neighborhood Hits	310
SwissProt Accessions	Q61670	Gene names	Hlx1, Hlx
Domain Architecture
Description	Homeobox protein HLX1.

DLX1_HUMAN
NC score	0.923633 (rank : 59)	θ value	8.11959e-09 (rank : 105)
Query Neighborhood Hits	349	Target Neighborhood Hits	343	Shared Neighborhood Hits	325
SwissProt Accessions	P56177, Q53ZU4, Q8IYB2	Gene names	DLX1
Domain Architecture
Description	Homeobox protein DLX-1.

DLX2_HUMAN
NC score	0.923618 (rank : 60)	θ value	1.25267e-09 (rank : 75)
Query Neighborhood Hits	349	Target Neighborhood Hits	355	Shared Neighborhood Hits	326
SwissProt Accessions	Q07687	Gene names	DLX2
Domain Architecture
Description	Homeobox protein DLX-2.

VAX2_HUMAN
NC score	0.923506 (rank : 61)	θ value	2.36244e-08 (rank : 143)
Query Neighborhood Hits	349	Target Neighborhood Hits	337	Shared Neighborhood Hits	317
SwissProt Accessions	Q9UIW0	Gene names	VAX2
Domain Architecture
Description	Ventral anterior homeobox 2.

DLX1_MOUSE
NC score	0.923324 (rank : 62)	θ value	8.11959e-09 (rank : 106)
Query Neighborhood Hits	349	Target Neighborhood Hits	343	Shared Neighborhood Hits	325
SwissProt Accessions	Q64317	Gene names	Dlx1
Domain Architecture
Description	Homeobox protein DLX-1.

DLX2_MOUSE
NC score	0.923232 (rank : 63)	θ value	1.25267e-09 (rank : 76)
Query Neighborhood Hits	349	Target Neighborhood Hits	352	Shared Neighborhood Hits	324
SwissProt Accessions	P40764	Gene names	Dlx2, Tes-1, Tes1
Domain Architecture
Description	Homeobox protein DLX-2 (Homeobox protein TES-1).

HLX1_HUMAN
NC score	0.923179 (rank : 64)	θ value	1.33837e-11 (rank : 28)
Query Neighborhood Hits	349	Target Neighborhood Hits	370	Shared Neighborhood Hits	311
SwissProt Accessions	Q14774, Q15988	Gene names	HLX1
Domain Architecture
Description	Homeobox protein HLX1 (Homeobox protein HB24).

IPF1_HUMAN
NC score	0.923090 (rank : 65)	θ value	4.30538e-10 (rank : 64)
Query Neighborhood Hits	349	Target Neighborhood Hits	330	Shared Neighborhood Hits	305
SwissProt Accessions	P52945, O60594	Gene names	IPF1, PDX1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Pancreas/duodenum homeobox 1) (PDX- 1) (Islet/duodenum homeobox-1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Insulin upstream factor 1) (IUF-1) (Glucose- sensitive factor) (GSF).

IPF1_MOUSE
NC score	0.922745 (rank : 66)	θ value	3.29651e-10 (rank : 61)
Query Neighborhood Hits	349	Target Neighborhood Hits	340	Shared Neighborhood Hits	306
SwissProt Accessions	P52946	Gene names	Ipf1, Pdx1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Islet/duodenum homeobox 1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Pancreas/duodenum homeobox 1).

VAX2_MOUSE
NC score	0.922461 (rank : 67)	θ value	2.36244e-08 (rank : 144)
Query Neighborhood Hits	349	Target Neighborhood Hits	338	Shared Neighborhood Hits	317
SwissProt Accessions	Q9WTP9	Gene names	Vax2, Vex
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 2 (Ventral retina homeodomain protein).

VAX1_MOUSE
NC score	0.921184 (rank : 68)	θ value	2.36244e-08 (rank : 142)
Query Neighborhood Hits	349	Target Neighborhood Hits	351	Shared Neighborhood Hits	320
SwissProt Accessions	Q2NKI2, O88880	Gene names	Vax1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

VAX1_HUMAN
NC score	0.921061 (rank : 69)	θ value	2.36244e-08 (rank : 141)
Query Neighborhood Hits	349	Target Neighborhood Hits	355	Shared Neighborhood Hits	320
SwissProt Accessions	Q5SQQ9, Q6ZSX0	Gene names	VAX1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

DLX3_MOUSE
NC score	0.920824 (rank : 70)	θ value	1.47974e-10 (rank : 46)
Query Neighborhood Hits	349	Target Neighborhood Hits	367	Shared Neighborhood Hits	327
SwissProt Accessions	Q64205	Gene names	Dlx3
Domain Architecture
Description	Homeobox protein DLX-3.

DLX3_HUMAN
NC score	0.920608 (rank : 71)	θ value	1.47974e-10 (rank : 45)
Query Neighborhood Hits	349	Target Neighborhood Hits	369	Shared Neighborhood Hits	327
SwissProt Accessions	O60479	Gene names	DLX3
Domain Architecture
Description	Homeobox protein DLX-3.

TITF1_MOUSE
NC score	0.916159 (rank : 72)	θ value	7.84624e-12 (rank : 27)
Query Neighborhood Hits	349	Target Neighborhood Hits	335	Shared Neighborhood Hits	315
SwissProt Accessions	P50220	Gene names	Titf1, Nkx-2.1, Nkx2-1, Ttf1
Domain Architecture	No domain graphic available
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1).

GSHI_HUMAN
NC score	0.915876 (rank : 73)	θ value	6.87365e-08 (rank : 164)
Query Neighborhood Hits	349	Target Neighborhood Hits	314	Shared Neighborhood Hits	304
SwissProt Accessions	Q9H4S2	Gene names	GSH1
Domain Architecture
Description	Homeobox protein GSH-1.

NKX24_MOUSE
NC score	0.915865 (rank : 74)	θ value	1.33837e-11 (rank : 30)
Query Neighborhood Hits	349	Target Neighborhood Hits	356	Shared Neighborhood Hits	315
SwissProt Accessions	Q9EQM3, Q9EQM4	Gene names	Nkx2-4, Nkx2d
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

GSHI_MOUSE
NC score	0.915765 (rank : 75)	θ value	6.87365e-08 (rank : 165)
Query Neighborhood Hits	349	Target Neighborhood Hits	313	Shared Neighborhood Hits	302
SwissProt Accessions	P31315	Gene names	Gsh1, Gsh-1
Domain Architecture
Description	Homeobox protein GSH-1.

GSH2_HUMAN
NC score	0.915171 (rank : 76)	θ value	1.17247e-07 (rank : 181)
Query Neighborhood Hits	349	Target Neighborhood Hits	324	Shared Neighborhood Hits	304
SwissProt Accessions	Q9BZM3	Gene names	GSH2
Domain Architecture
Description	Homeobox protein GSH-2.

TITF1_HUMAN
NC score	0.914921 (rank : 77)	θ value	7.84624e-12 (rank : 26)
Query Neighborhood Hits	349	Target Neighborhood Hits	332	Shared Neighborhood Hits	315
SwissProt Accessions	P43699, O14954, O14955, Q9BRJ8	Gene names	TITF1, NKX2-1, NKX2A, TTF1
Domain Architecture
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1) (Homeobox protein NK-2 homolog A).

CDX1_MOUSE
NC score	0.914645 (rank : 78)	θ value	3.64472e-09 (rank : 93)
Query Neighborhood Hits	349	Target Neighborhood Hits	379	Shared Neighborhood Hits	306
SwissProt Accessions	P18111, Q8VCF7	Gene names	Cdx1, Cdx-1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

NKX22_HUMAN
NC score	0.913810 (rank : 79)	θ value	3.29651e-10 (rank : 62)
Query Neighborhood Hits	349	Target Neighborhood Hits	342	Shared Neighborhood Hits	317
SwissProt Accessions	O95096	Gene names	NKX2-2, NKX2.2, NKX2B
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

CDX1_HUMAN
NC score	0.913685 (rank : 80)	θ value	1.06045e-08 (rank : 111)
Query Neighborhood Hits	349	Target Neighborhood Hits	382	Shared Neighborhood Hits	308
SwissProt Accessions	P47902, Q4VAU4, Q9NYK8	Gene names	CDX1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

GSH2_MOUSE
NC score	0.913614 (rank : 81)	θ value	1.17247e-07 (rank : 182)
Query Neighborhood Hits	349	Target Neighborhood Hits	319	Shared Neighborhood Hits	304
SwissProt Accessions	P31316	Gene names	Gsh2, Gsh-2
Domain Architecture
Description	Homeobox protein GSH-2.

NKX22_MOUSE
NC score	0.913443 (rank : 82)	θ value	3.29651e-10 (rank : 63)
Query Neighborhood Hits	349	Target Neighborhood Hits	336	Shared Neighborhood Hits	319
SwissProt Accessions	P42586	Gene names	Nkx2-2, Nkx-2.2, Nkx2b
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

NKX24_HUMAN
NC score	0.913319 (rank : 83)	θ value	1.33837e-11 (rank : 29)
Query Neighborhood Hits	349	Target Neighborhood Hits	366	Shared Neighborhood Hits	317
SwissProt Accessions	Q9H2Z4	Gene names	NKX2-4, NKX2D
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

HXB2_MOUSE
NC score	0.913253 (rank : 84)	θ value	1.133e-10 (rank : 43)
Query Neighborhood Hits	349	Target Neighborhood Hits	350	Shared Neighborhood Hits	304
SwissProt Accessions	P0C1T1	Gene names	Hoxb2, Hox-2.8
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-B2 (Hox-2.8).

HXB1_MOUSE
NC score	0.912422 (rank : 85)	θ value	4.0297e-08 (rank : 153)
Query Neighborhood Hits	349	Target Neighborhood Hits	341	Shared Neighborhood Hits	316
SwissProt Accessions	P17919, Q3ZAY6, Q9CYH3	Gene names	Hoxb1, Hox-2.9, Hoxb-1
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2.9).

DLX5_HUMAN
NC score	0.911234 (rank : 86)	θ value	7.34386e-10 (rank : 67)
Query Neighborhood Hits	349	Target Neighborhood Hits	405	Shared Neighborhood Hits	326
SwissProt Accessions	P56178, Q9UPL1	Gene names	DLX5
Domain Architecture
Description	Homeobox protein DLX-5.

HXB1_HUMAN
NC score	0.910972 (rank : 87)	θ value	4.0297e-08 (rank : 152)
Query Neighborhood Hits	349	Target Neighborhood Hits	356	Shared Neighborhood Hits	314
SwissProt Accessions	P14653	Gene names	HOXB1, HOX2I
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2I).

CDX2_MOUSE
NC score	0.910349 (rank : 88)	θ value	4.0297e-08 (rank : 150)
Query Neighborhood Hits	349	Target Neighborhood Hits	336	Shared Neighborhood Hits	310
SwissProt Accessions	P43241	Gene names	Cdx2, Cdx-2
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2).

HME2_HUMAN
NC score	0.909656 (rank : 89)	θ value	5.26297e-08 (rank : 157)
Query Neighborhood Hits	349	Target Neighborhood Hits	355	Shared Neighborhood Hits	323
SwissProt Accessions	P19622	Gene names	EN2
Domain Architecture
Description	Homeobox protein engrailed-2 (Hu-En-2).

CDX4_HUMAN
NC score	0.909539 (rank : 90)	θ value	6.87365e-08 (rank : 162)
Query Neighborhood Hits	349	Target Neighborhood Hits	366	Shared Neighborhood Hits	324
SwissProt Accessions	O14627, Q5JS20	Gene names	CDX4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

HXA2_MOUSE
NC score	0.908807 (rank : 91)	θ value	2.13673e-09 (rank : 86)
Query Neighborhood Hits	349	Target Neighborhood Hits	338	Shared Neighborhood Hits	307
SwissProt Accessions	P31245, Q149U3, Q920T8	Gene names	Hoxa2, Hox-1.11, Hoxa-2
Domain Architecture
Description	Homeobox protein Hox-A2 (Hox-1.11) (Hox1.11).

HME2_MOUSE
NC score	0.908310 (rank : 92)	θ value	5.26297e-08 (rank : 158)
Query Neighborhood Hits	349	Target Neighborhood Hits	352	Shared Neighborhood Hits	323
SwissProt Accessions	P09066	Gene names	En2, En-2
Domain Architecture
Description	Homeobox protein engrailed-2 (Mo-En-2).

CDX2_HUMAN
NC score	0.907754 (rank : 93)	θ value	3.08544e-08 (rank : 145)
Query Neighborhood Hits	349	Target Neighborhood Hits	330	Shared Neighborhood Hits	306
SwissProt Accessions	Q99626, O00503, Q969L8	Gene names	CDX2, CDX3
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2) (CDX-3).

DLX5_MOUSE
NC score	0.907517 (rank : 94)	θ value	7.34386e-10 (rank : 68)
Query Neighborhood Hits	349	Target Neighborhood Hits	434	Shared Neighborhood Hits	326
SwissProt Accessions	P70396, O54876, O54877, O54878, Q9JJ45	Gene names	Dlx5
Domain Architecture
Description	Homeobox protein DLX-5.

HXA2_HUMAN
NC score	0.905938 (rank : 95)	θ value	2.13673e-09 (rank : 85)
Query Neighborhood Hits	349	Target Neighborhood Hits	370	Shared Neighborhood Hits	307
SwissProt Accessions	O43364	Gene names	HOXA2
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A2.

HXB2_HUMAN
NC score	0.905392 (rank : 96)	θ value	2.13673e-09 (rank : 89)
Query Neighborhood Hits	349	Target Neighborhood Hits	367	Shared Neighborhood Hits	306
SwissProt Accessions	P14652, P10913, P17485	Gene names	HOXB2, HOX2H
Domain Architecture
Description	Homeobox protein Hox-B2 (Hox-2H) (Hox-2.8) (K8).

HME1_HUMAN
NC score	0.904462 (rank : 97)	θ value	5.26297e-08 (rank : 155)
Query Neighborhood Hits	349	Target Neighborhood Hits	384	Shared Neighborhood Hits	316
SwissProt Accessions	Q05925	Gene names	EN1
Domain Architecture
Description	Homeobox protein engrailed-1 (Hu-En-1).

HME1_MOUSE
NC score	0.904428 (rank : 98)	θ value	5.26297e-08 (rank : 156)
Query Neighborhood Hits	349	Target Neighborhood Hits	397	Shared Neighborhood Hits	316
SwissProt Accessions	P09065	Gene names	En1, En-1
Domain Architecture
Description	Homeobox protein engrailed-1 (Mo-En-1).

EVX2_MOUSE
NC score	0.904054 (rank : 99)	θ value	9.92553e-07 (rank : 207)
Query Neighborhood Hits	349	Target Neighborhood Hits	327	Shared Neighborhood Hits	309
SwissProt Accessions	P49749	Gene names	Evx2, Evx-2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

EVX1_MOUSE
NC score	0.903867 (rank : 100)	θ value	5.81887e-07 (rank : 200)
Query Neighborhood Hits	349	Target Neighborhood Hits	350	Shared Neighborhood Hits	311
SwissProt Accessions	P23683	Gene names	Evx1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

EVX2_HUMAN
NC score	0.903803 (rank : 101)	θ value	9.92553e-07 (rank : 206)
Query Neighborhood Hits	349	Target Neighborhood Hits	325	Shared Neighborhood Hits	308
SwissProt Accessions	Q03828	Gene names	EVX2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

CDX4_MOUSE
NC score	0.903280 (rank : 102)	θ value	8.97725e-08 (rank : 171)
Query Neighborhood Hits	349	Target Neighborhood Hits	378	Shared Neighborhood Hits	320
SwissProt Accessions	Q07424	Gene names	Cdx4, Cdx-4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

HXA1_MOUSE
NC score	0.902304 (rank : 103)	θ value	6.87365e-08 (rank : 167)
Query Neighborhood Hits	349	Target Neighborhood Hits	341	Shared Neighborhood Hits	313
SwissProt Accessions	P09022, P15463	Gene names	Hoxa1, Era-1, Hox-1.6, Hoxa-1
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399).

HXD12_HUMAN
NC score	0.901793 (rank : 104)	θ value	1.17247e-07 (rank : 183)
Query Neighborhood Hits	349	Target Neighborhood Hits	334	Shared Neighborhood Hits	316
SwissProt Accessions	P35452, Q9NS03	Gene names	HOXD12, HOX4H
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4H).

HXA1_HUMAN
NC score	0.901415 (rank : 105)	θ value	6.87365e-08 (rank : 166)
Query Neighborhood Hits	349	Target Neighborhood Hits	334	Shared Neighborhood Hits	311
SwissProt Accessions	P49639, O43363	Gene names	HOXA1, HOX1F
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1F).

HXD1_MOUSE
NC score	0.900396 (rank : 106)	θ value	8.97725e-08 (rank : 176)
Query Neighborhood Hits	349	Target Neighborhood Hits	381	Shared Neighborhood Hits	313
SwissProt Accessions	Q01822	Gene names	Hoxd1, Hox-4.9, Hoxd-1
Domain Architecture
Description	Homeobox protein Hox-D1 (Hox-4.9).

HXD1_HUMAN
NC score	0.900199 (rank : 107)	θ value	3.41135e-07 (rank : 196)
Query Neighborhood Hits	349	Target Neighborhood Hits	337	Shared Neighborhood Hits	309
SwissProt Accessions	Q9GZZ0	Gene names	HOXD1
Domain Architecture
Description	Homeobox protein Hox-D1.

EVX1_HUMAN
NC score	0.899652 (rank : 108)	θ value	9.92553e-07 (rank : 205)
Query Neighborhood Hits	349	Target Neighborhood Hits	349	Shared Neighborhood Hits	310
SwissProt Accessions	P49640	Gene names	EVX1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

HXD3_MOUSE
NC score	0.899524 (rank : 109)	θ value	3.29651e-10 (rank : 60)
Query Neighborhood Hits	349	Target Neighborhood Hits	435	Shared Neighborhood Hits	313
SwissProt Accessions	P09027, Q3UUD3	Gene names	Hoxd3, Hox-4.1, Hoxd-3
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4.1) (Homeobox protein MH-19).

PEPP1_HUMAN
NC score	0.897906 (rank : 110)	θ value	1.09739e-05 (rank : 229)
Query Neighborhood Hits	349	Target Neighborhood Hits	338	Shared Neighborhood Hits	323
SwissProt Accessions	Q8NHV9, O95030, Q3SYE0	Gene names	PEPP1, OTEX
Domain Architecture
Description	Paired-like homeobox protein PEPP-1 (Ovary-, testis- and epididymis- expressed gene protein).

HXC4_MOUSE
NC score	0.897727 (rank : 111)	θ value	3.29651e-10 (rank : 57)
Query Neighborhood Hits	349	Target Neighborhood Hits	365	Shared Neighborhood Hits	311
SwissProt Accessions	Q08624	Gene names	Hoxc4, Hox-3.5, Hoxc-4
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3.5).

HXD11_HUMAN
NC score	0.897659 (rank : 112)	θ value	8.11959e-09 (rank : 109)
Query Neighborhood Hits	349	Target Neighborhood Hits	353	Shared Neighborhood Hits	314
SwissProt Accessions	P31277, Q9NS02	Gene names	HOXD11, HOX4F
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4F).

HXD3_HUMAN
NC score	0.897464 (rank : 113)	θ value	7.34386e-10 (rank : 71)
Query Neighborhood Hits	349	Target Neighborhood Hits	433	Shared Neighborhood Hits	310
SwissProt Accessions	P31249, Q99955, Q9BSC5	Gene names	HOXD3, HOX4A
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4A).

HXA4_HUMAN
NC score	0.896461 (rank : 114)	θ value	5.62301e-10 (rank : 65)
Query Neighborhood Hits	349	Target Neighborhood Hits	370	Shared Neighborhood Hits	303
SwissProt Accessions	Q00056, O43366	Gene names	HOXA4, HOX1D
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4).

HXA4_MOUSE
NC score	0.895972 (rank : 115)	θ value	9.59137e-10 (rank : 72)
Query Neighborhood Hits	349	Target Neighborhood Hits	379	Shared Neighborhood Hits	306
SwissProt Accessions	P06798, Q61684, Q64388, Q8BPE6	Gene names	Hoxa4, Hox-1.4, Hoxa-4
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1.4) (Homeobox protein MH-3).

HXD11_MOUSE
NC score	0.895958 (rank : 116)	θ value	2.79066e-09 (rank : 92)
Query Neighborhood Hits	349	Target Neighborhood Hits	376	Shared Neighborhood Hits	313
SwissProt Accessions	P23813	Gene names	Hoxd11, Hox-4.6, Hoxd-11
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5).

ESX1L_HUMAN
NC score	0.895645 (rank : 117)	θ value	2.79066e-09 (rank : 91)
Query Neighborhood Hits	349	Target Neighborhood Hits	498	Shared Neighborhood Hits	319
SwissProt Accessions	Q8N693, Q7Z6K7	Gene names	ESX1L, ESX1R
Domain Architecture
Description	Extraembryonic, spermatogenesis, homeobox 1-like protein.

HXD12_MOUSE
NC score	0.895473 (rank : 118)	θ value	4.0297e-08 (rank : 154)
Query Neighborhood Hits	349	Target Neighborhood Hits	370	Shared Neighborhood Hits	316
SwissProt Accessions	P23812	Gene names	Hoxd12, Hox-4.7, Hoxd-12
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4.7) (Hox-5.6).

HXB4_HUMAN
NC score	0.894336 (rank : 119)	θ value	3.29651e-10 (rank : 55)
Query Neighborhood Hits	349	Target Neighborhood Hits	376	Shared Neighborhood Hits	309
SwissProt Accessions	P17483, Q9NTA0	Gene names	HOXB4, HOX2F
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2F) (Hox-2.6).

HXC4_HUMAN
NC score	0.893341 (rank : 120)	θ value	1.25267e-09 (rank : 77)
Query Neighborhood Hits	349	Target Neighborhood Hits	361	Shared Neighborhood Hits	311
SwissProt Accessions	P09017	Gene names	HOXC4, HOX3E
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3E) (CP19).

HXA3_HUMAN
NC score	0.892740 (rank : 121)	θ value	4.76016e-09 (rank : 100)
Query Neighborhood Hits	349	Target Neighborhood Hits	535	Shared Neighborhood Hits	318
SwissProt Accessions	O43365	Gene names	HOXA3, HOX1E
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1E).

HXA3_MOUSE
NC score	0.892202 (rank : 122)	θ value	1.06045e-08 (rank : 112)
Query Neighborhood Hits	349	Target Neighborhood Hits	558	Shared Neighborhood Hits	320
SwissProt Accessions	P02831, Q4V9Z8, Q61197	Gene names	Hoxa3, Hox-1.5, Hoxa-3
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1.5) (MO-10).

ARX_HUMAN
NC score	0.891351 (rank : 123)	θ value	2.36244e-08 (rank : 128)
Query Neighborhood Hits	349	Target Neighborhood Hits	401	Shared Neighborhood Hits	324
SwissProt Accessions	Q96QS3	Gene names	ARX
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

HXB4_MOUSE
NC score	0.891196 (rank : 124)	θ value	3.29651e-10 (rank : 56)
Query Neighborhood Hits	349	Target Neighborhood Hits	375	Shared Neighborhood Hits	308
SwissProt Accessions	P10284, Q3UZB4, Q4VBG0	Gene names	Hoxb4, Hox-2.6, Hoxb-4
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2.6).

RX_HUMAN
NC score	0.891176 (rank : 125)	θ value	1.63604e-09 (rank : 84)
Query Neighborhood Hits	349	Target Neighborhood Hits	423	Shared Neighborhood Hits	322
SwissProt Accessions	Q9Y2V3	Gene names	RAX, RX
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

HESX1_MOUSE
NC score	0.890979 (rank : 126)	θ value	1.29631e-06 (rank : 212)
Query Neighborhood Hits	349	Target Neighborhood Hits	331	Shared Neighborhood Hits	316
SwissProt Accessions	Q61658, Q61047	Gene names	Hesx1, Hes-1, Rpx
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (Anterior- restricted homeobox protein) (Rathke pouch homeo box).

HXD4_HUMAN
NC score	0.890867 (rank : 127)	θ value	6.21693e-09 (rank : 102)
Query Neighborhood Hits	349	Target Neighborhood Hits	337	Shared Neighborhood Hits	297
SwissProt Accessions	P09016, Q96AU0	Gene names	HOXD4, HOX4B
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4B) (Hox-5.1) (HHO.C13).

RX_MOUSE
NC score	0.889858 (rank : 128)	θ value	1.06045e-08 (rank : 118)
Query Neighborhood Hits	349	Target Neighborhood Hits	429	Shared Neighborhood Hits	323
SwissProt Accessions	O35602, O08748	Gene names	Rax, Rx
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

ARX_MOUSE
NC score	0.889768 (rank : 129)	θ value	2.36244e-08 (rank : 129)
Query Neighborhood Hits	349	Target Neighborhood Hits	398	Shared Neighborhood Hits	324
SwissProt Accessions	O35085, Q9QYT4	Gene names	Arx
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

HESX1_HUMAN
NC score	0.889698 (rank : 130)	θ value	7.59969e-07 (rank : 204)
Query Neighborhood Hits	349	Target Neighborhood Hits	326	Shared Neighborhood Hits	316
SwissProt Accessions	Q9UBX0, Q99667	Gene names	HESX1, HANF
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (hAnf).

HXD4_MOUSE
NC score	0.888828 (rank : 131)	θ value	6.21693e-09 (rank : 103)
Query Neighborhood Hits	349	Target Neighborhood Hits	339	Shared Neighborhood Hits	296
SwissProt Accessions	P10628, P97451, Q3UXL6	Gene names	Hoxd4, Hox-4.2, Hoxd-4
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4.2) (Hox-5.1).

HXA11_HUMAN
NC score	0.888777 (rank : 132)	θ value	5.26297e-08 (rank : 159)
Query Neighborhood Hits	349	Target Neighborhood Hits	334	Shared Neighborhood Hits	306
SwissProt Accessions	P31270	Gene names	HOXA11, HOX1I
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1I).

HXC11_HUMAN
NC score	0.888257 (rank : 133)	θ value	3.41135e-07 (rank : 195)
Query Neighborhood Hits	349	Target Neighborhood Hits	349	Shared Neighborhood Hits	315
SwissProt Accessions	O43248, Q96DH2	Gene names	HOXC11
Domain Architecture
Description	Homeobox protein Hox-C11.

PITX3_MOUSE
NC score	0.887681 (rank : 134)	θ value	3.08544e-08 (rank : 149)
Query Neighborhood Hits	349	Target Neighborhood Hits	380	Shared Neighborhood Hits	329
SwissProt Accessions	O35160	Gene names	Pitx3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

PITX3_HUMAN
NC score	0.887401 (rank : 135)	θ value	1.80886e-08 (rank : 125)
Query Neighborhood Hits	349	Target Neighborhood Hits	366	Shared Neighborhood Hits	329
SwissProt Accessions	O75364	Gene names	PITX3, PTX3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

HXA7_MOUSE
NC score	0.886611 (rank : 136)	θ value	4.0297e-08 (rank : 151)
Query Neighborhood Hits	349	Target Neighborhood Hits	318	Shared Neighborhood Hits	303
SwissProt Accessions	P02830, Q544P0	Gene names	Hoxa7, Hox-1.1, Hoxa-7
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1.1) (M6-12) (M6).

OTP_MOUSE
NC score	0.886537 (rank : 137)	θ value	8.11959e-09 (rank : 110)
Query Neighborhood Hits	349	Target Neighborhood Hits	387	Shared Neighborhood Hits	323
SwissProt Accessions	O09113	Gene names	Otp
Domain Architecture
Description	Homeobox protein orthopedia.

HXB7_HUMAN
NC score	0.885912 (rank : 138)	θ value	2.36244e-08 (rank : 134)
Query Neighborhood Hits	349	Target Neighborhood Hits	311	Shared Neighborhood Hits	301
SwissProt Accessions	P09629, Q15957	Gene names	HOXB7, HOX2C
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2C) (HHO.C1).

HXB7_MOUSE
NC score	0.885664 (rank : 139)	θ value	2.36244e-08 (rank : 135)
Query Neighborhood Hits	349	Target Neighborhood Hits	314	Shared Neighborhood Hits	301
SwissProt Accessions	P09024, Q3UW15	Gene names	Hoxb7, Hox-2.3, Hoxb-7
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2.3) (MUB1) (Homeobox protein MH-22B).

HXB3_MOUSE
NC score	0.885599 (rank : 140)	θ value	1.80886e-08 (rank : 120)
Query Neighborhood Hits	349	Target Neighborhood Hits	493	Shared Neighborhood Hits	309
SwissProt Accessions	P09026, P10285, Q4PJ06, Q61680	Gene names	Hoxb3, Hox-2.7, Hoxb-3
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2.7) (Homeobox protein MH-23).

HXA7_HUMAN
NC score	0.885112 (rank : 141)	θ value	6.87365e-08 (rank : 168)
Query Neighborhood Hits	349	Target Neighborhood Hits	309	Shared Neighborhood Hits	299
SwissProt Accessions	P31268, O43368, O43486, O95655, Q9NSC8, Q9UDM1	Gene names	HOXA7, HOX1A
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1).

HXA11_MOUSE
NC score	0.885001 (rank : 142)	θ value	5.26297e-08 (rank : 160)
Query Neighborhood Hits	349	Target Neighborhood Hits	327	Shared Neighborhood Hits	306
SwissProt Accessions	P31311, Q3V026	Gene names	Hoxa11, Hox-1.9, Hoxa-11
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1.9).

HXC5_HUMAN
NC score	0.884770 (rank : 143)	θ value	2.36244e-08 (rank : 136)
Query Neighborhood Hits	349	Target Neighborhood Hits	316	Shared Neighborhood Hits	298
SwissProt Accessions	Q00444	Gene names	HOXC5, HOX3D
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3D) (CP11).

HXC5_MOUSE
NC score	0.884265 (rank : 144)	θ value	2.36244e-08 (rank : 137)
Query Neighborhood Hits	349	Target Neighborhood Hits	316	Shared Neighborhood Hits	298
SwissProt Accessions	P32043, Q8BJW4	Gene names	Hoxc5, Hox-3.4, Hoxc-5
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3.4) (Hox-6.2).

PHX2A_HUMAN
NC score	0.884198 (rank : 145)	θ value	1.53129e-07 (rank : 186)
Query Neighborhood Hits	349	Target Neighborhood Hits	345	Shared Neighborhood Hits	312
SwissProt Accessions	O14813, Q8IVZ2	Gene names	PHOX2A, ARIX, PMX2A
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (Aristaless homeobox protein homolog) (ARIX1 homeodomain protein).

HXA9_MOUSE
NC score	0.882917 (rank : 146)	θ value	2.13673e-09 (rank : 88)
Query Neighborhood Hits	349	Target Neighborhood Hits	334	Shared Neighborhood Hits	310
SwissProt Accessions	P09631, O70154, O70155	Gene names	Hoxa9, Hox-1.7, Hoxa-9
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1.7).

HXA5_MOUSE
NC score	0.882761 (rank : 147)	θ value	2.36244e-08 (rank : 131)
Query Neighborhood Hits	349	Target Neighborhood Hits	338	Shared Neighborhood Hits	300
SwissProt Accessions	P09021, Q91VQ5	Gene names	Hoxa5, Hox-1.3, Hoxa-5
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1.3) (M2).

HXB5_HUMAN
NC score	0.882545 (rank : 148)	θ value	2.36244e-08 (rank : 132)
Query Neighborhood Hits	349	Target Neighborhood Hits	332	Shared Neighborhood Hits	298
SwissProt Accessions	P09067, P09069	Gene names	HOXB5, HOX2A
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2A) (HHO.C10) (HU-1).

HXA5_HUMAN
NC score	0.882507 (rank : 149)	θ value	2.36244e-08 (rank : 130)
Query Neighborhood Hits	349	Target Neighborhood Hits	336	Shared Neighborhood Hits	300
SwissProt Accessions	P20719, O43367, Q96CY6	Gene names	HOXA5, HOX1C
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1C).

PHX2A_MOUSE
NC score	0.882316 (rank : 150)	θ value	1.53129e-07 (rank : 187)
Query Neighborhood Hits	349	Target Neighborhood Hits	338	Shared Neighborhood Hits	312
SwissProt Accessions	Q62066	Gene names	Phox2a, Arix, Phox2, Pmx2, Pmx2a
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (PHOX2A homeodomain protein) (Aristaless homeobox protein homolog).

HXA9_HUMAN
NC score	0.882020 (rank : 151)	θ value	2.13673e-09 (rank : 87)
Query Neighborhood Hits	349	Target Neighborhood Hits	332	Shared Neighborhood Hits	310
SwissProt Accessions	P31269, O43369, O43429, Q99820	Gene names	HOXA9, HOX1G
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1G).

HXB5_MOUSE
NC score	0.881656 (rank : 152)	θ value	2.36244e-08 (rank : 133)
Query Neighborhood Hits	349	Target Neighborhood Hits	337	Shared Neighborhood Hits	298
SwissProt Accessions	P09079, Q3ZAY8	Gene names	Hoxb5, Hox-2.1, Hoxb-5
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2.1) (MU-1) (H24.1).

PEPP2_HUMAN
NC score	0.881031 (rank : 153)	θ value	0.00134147 (rank : 247)
Query Neighborhood Hits	349	Target Neighborhood Hits	316	Shared Neighborhood Hits	300
SwissProt Accessions	Q9BQY4, Q9BR00	Gene names	PEPP2, THG1
Domain Architecture
Description	Paired-like homeobox protein PEPP-2 (Testis homeobox gene 1).

PITX2_MOUSE
NC score	0.879452 (rank : 154)	θ value	1.06045e-08 (rank : 117)
Query Neighborhood Hits	349	Target Neighborhood Hits	383	Shared Neighborhood Hits	332
SwissProt Accessions	P97474, O08646, O70336, P97933, Q9JLA0, Q9QXB8, Q9R1V9, Q9Z141	Gene names	Pitx2, Arp1, Brx1, Otlx2, Ptx2, Rgs
Domain Architecture
Description	Pituitary homeobox 2 (Orthodenticle-like homeobox 2) (Solurshin) (ALL1-responsive protein ARP1) (BRX1 homeoprotein) (Paired-like homeodomain transcription factor Munc 30).

SHOX_HUMAN
NC score	0.879014 (rank : 155)	θ value	9.59137e-10 (rank : 74)
Query Neighborhood Hits	349	Target Neighborhood Hits	363	Shared Neighborhood Hits	324
SwissProt Accessions	O15266, O00412, O00413, O15267	Gene names	SHOX, PHOG
Domain Architecture
Description	Short stature homeobox protein (Short stature homeobox-containing protein) (Pseudoautosomal homeobox-containing osteogenic protein).

HXC6_HUMAN
NC score	0.878355 (rank : 156)	θ value	1.99992e-07 (rank : 192)
Query Neighborhood Hits	349	Target Neighborhood Hits	306	Shared Neighborhood Hits	297
SwissProt Accessions	P09630	Gene names	HOXC6, HOX3C
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3C) (HHO.C8) (CP25).

HXC6_MOUSE
NC score	0.878355 (rank : 157)	θ value	1.99992e-07 (rank : 193)
Query Neighborhood Hits	349	Target Neighborhood Hits	306	Shared Neighborhood Hits	297
SwissProt Accessions	P10629, Q61683	Gene names	Hoxc6, Hox-3.3, Hoxc-6
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3.3) (Hox-6.1).

PITX2_HUMAN
NC score	0.878179 (rank : 158)	θ value	8.97725e-08 (rank : 178)
Query Neighborhood Hits	349	Target Neighborhood Hits	381	Shared Neighborhood Hits	332
SwissProt Accessions	Q99697, O60578, O60579, O60580, Q9BY17	Gene names	PITX2, ARP1, RGS, RIEG, RIEG1
Domain Architecture
Description	Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription factor) (Solurshin) (ALL1-responsive protein ARP1).

HXB3_HUMAN
NC score	0.878012 (rank : 159)	θ value	1.80886e-08 (rank : 119)
Query Neighborhood Hits	349	Target Neighborhood Hits	559	Shared Neighborhood Hits	312
SwissProt Accessions	P14651, O95615, P17484	Gene names	HOXB3, HOX2G
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7).

HXC10_MOUSE
NC score	0.877834 (rank : 160)	θ value	1.133e-10 (rank : 44)
Query Neighborhood Hits	349	Target Neighborhood Hits	417	Shared Neighborhood Hits	308
SwissProt Accessions	P31257, P31312, Q7TMT7	Gene names	Hoxc10, Hox-3.6, Hoxc-10
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C10 (Hox-3.6).

HXC10_HUMAN
NC score	0.877808 (rank : 161)	θ value	1.47974e-10 (rank : 47)
Query Neighborhood Hits	349	Target Neighborhood Hits	417	Shared Neighborhood Hits	307
SwissProt Accessions	Q9NYD6, O15219, O15220, Q9BVD5	Gene names	HOXC10
Domain Architecture
Description	Homeobox protein Hox-C10.

HXA10_HUMAN
NC score	0.877452 (rank : 162)	θ value	7.34386e-10 (rank : 69)
Query Neighborhood Hits	349	Target Neighborhood Hits	334	Shared Neighborhood Hits	298
SwissProt Accessions	P31260, O43370, O43605, Q15949	Gene names	HOXA10, HOX1H
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL).

HXD10_MOUSE
NC score	0.877082 (rank : 163)	θ value	3.29651e-10 (rank : 59)
Query Neighborhood Hits	349	Target Neighborhood Hits	392	Shared Neighborhood Hits	314
SwissProt Accessions	P28359, Q91WU9	Gene names	Hoxd10, Hox-4.5, Hoxd-10
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4.5) (Hox-5.3).

HXD10_HUMAN
NC score	0.877056 (rank : 164)	θ value	3.29651e-10 (rank : 58)
Query Neighborhood Hits	349	Target Neighborhood Hits	392	Shared Neighborhood Hits	314
SwissProt Accessions	P28358	Gene names	HOXD10, HOX4D
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4D) (Hox-4E).

SHOX2_MOUSE
NC score	0.876918 (rank : 165)	θ value	4.76016e-09 (rank : 101)
Query Neighborhood Hits	349	Target Neighborhood Hits	348	Shared Neighborhood Hits	320
SwissProt Accessions	P70390, P70369	Gene names	Shox2, Og12x, Prx3
Domain Architecture
Description	Short stature homeobox protein 2 (Homeobox protein Og12X) (OG-12) (Paired family homeodomain protein Prx3).

SHOX2_HUMAN
NC score	0.876584 (rank : 166)	θ value	3.64472e-09 (rank : 99)
Query Neighborhood Hits	349	Target Neighborhood Hits	353	Shared Neighborhood Hits	320
SwissProt Accessions	O60902, O60465, O60467, O60903	Gene names	SHOX2, OG12X, SHOT
Domain Architecture
Description	Short stature homeobox protein 2 (Paired-related homeobox protein SHOT) (Homeobox protein Og12X).

HXA10_MOUSE
NC score	0.876080 (rank : 167)	θ value	7.34386e-10 (rank : 70)
Query Neighborhood Hits	349	Target Neighborhood Hits	365	Shared Neighborhood Hits	301
SwissProt Accessions	P31310, Q80Y22	Gene names	Hoxa10, Hox-1.8, Hoxa-10
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1.8).

HXD9_HUMAN
NC score	0.876022 (rank : 168)	θ value	1.06045e-08 (rank : 115)
Query Neighborhood Hits	349	Target Neighborhood Hits	352	Shared Neighborhood Hits	310
SwissProt Accessions	P28356	Gene names	HOXD9, HOX4C
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2).

GSC_HUMAN
NC score	0.875759 (rank : 169)	θ value	8.97725e-08 (rank : 174)
Query Neighborhood Hits	349	Target Neighborhood Hits	369	Shared Neighborhood Hits	327
SwissProt Accessions	P56915, Q86YR1	Gene names	GSC
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid.

HXC12_HUMAN
NC score	0.875691 (rank : 170)	θ value	1.09739e-05 (rank : 225)
Query Neighborhood Hits	349	Target Neighborhood Hits	313	Shared Neighborhood Hits	305
SwissProt Accessions	P31275, Q9BXJ6	Gene names	HOXC12, HOX3F
Domain Architecture
Description	Homeobox protein Hox-C12 (Hox-3F).

GSC_MOUSE
NC score	0.875438 (rank : 171)	θ value	8.97725e-08 (rank : 175)
Query Neighborhood Hits	349	Target Neighborhood Hits	368	Shared Neighborhood Hits	326
SwissProt Accessions	Q02591	Gene names	Gsc
Domain Architecture
Description	Homeobox protein goosecoid.

PITX1_MOUSE
NC score	0.875067 (rank : 172)	θ value	3.41135e-07 (rank : 198)
Query Neighborhood Hits	349	Target Neighborhood Hits	362	Shared Neighborhood Hits	330
SwissProt Accessions	P70314, O54742, P70427	Gene names	Pitx1, Bft, Potx, Ptx1
Domain Architecture
Description	Pituitary homeobox 1 (Homeobox protein P-OTX) (Pituitary OTX-related factor) (Hindlimb expressed homeobox protein backfoot) (Ptx1).

HXB6_MOUSE
NC score	0.874492 (rank : 173)	θ value	1.06045e-08 (rank : 114)
Query Neighborhood Hits	349	Target Neighborhood Hits	309	Shared Neighborhood Hits	294
SwissProt Accessions	P09023	Gene names	Hoxb6, Hox-2.2, Hoxb-6
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2.2) (Homeobox protein MH-22A).

PITX1_HUMAN
NC score	0.874453 (rank : 174)	θ value	3.41135e-07 (rank : 197)
Query Neighborhood Hits	349	Target Neighborhood Hits	353	Shared Neighborhood Hits	323
SwissProt Accessions	P78337, O14677, O60425, Q9BTI5	Gene names	PITX1, BFT, PTX1
Domain Architecture
Description	Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot).

HXB6_HUMAN
NC score	0.874049 (rank : 175)	θ value	1.06045e-08 (rank : 113)
Query Neighborhood Hits	349	Target Neighborhood Hits	307	Shared Neighborhood Hits	294
SwissProt Accessions	P17509, P09068, Q9HB11, Q9UGH2	Gene names	HOXB6, HOX2B
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2).

PRRXL_MOUSE
NC score	0.874022 (rank : 176)	θ value	5.81887e-07 (rank : 203)
Query Neighborhood Hits	349	Target Neighborhood Hits	350	Shared Neighborhood Hits	331
SwissProt Accessions	Q8BYH0, Q8K3F8	Gene names	Prrxl1, Drg11
Domain Architecture	No domain graphic available
Description	Paired-related homeobox protein-like 1 (Dorsal root ganglion 11) (Homeobox protein DRG11).

HXC12_MOUSE
NC score	0.873906 (rank : 177)	θ value	1.09739e-05 (rank : 226)
Query Neighborhood Hits	349	Target Neighborhood Hits	316	Shared Neighborhood Hits	305
SwissProt Accessions	Q8K5B8	Gene names	Hoxc12, Hox-3.8, Hoxc-12
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C12 (Hox-3.8).

HXC8_MOUSE
NC score	0.872856 (rank : 178)	θ value	1.80886e-08 (rank : 124)
Query Neighborhood Hits	349	Target Neighborhood Hits	327	Shared Neighborhood Hits	309
SwissProt Accessions	P09025	Gene names	Hoxc8, Hox-3.1, Hoxc-8
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3.1) (M31).

HXC8_HUMAN
NC score	0.872810 (rank : 179)	θ value	1.80886e-08 (rank : 123)
Query Neighborhood Hits	349	Target Neighborhood Hits	327	Shared Neighborhood Hits	309
SwissProt Accessions	P31273, O15221, O15362	Gene names	HOXC8, HOX3A
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3A).

HXB8_MOUSE
NC score	0.872701 (rank : 180)	θ value	8.11959e-09 (rank : 108)
Query Neighborhood Hits	349	Target Neighborhood Hits	325	Shared Neighborhood Hits	312
SwissProt Accessions	P09632	Gene names	Hoxb8, Hox-2.4, Hoxb-8
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2.4).

HXD9_MOUSE
NC score	0.872438 (rank : 181)	θ value	1.06045e-08 (rank : 116)
Query Neighborhood Hits	349	Target Neighborhood Hits	359	Shared Neighborhood Hits	310
SwissProt Accessions	P28357, Q3UYS2	Gene names	Hoxd9, Hox-4.4, Hoxd-9
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4.4) (Hox-5.2).

HXB8_HUMAN
NC score	0.872391 (rank : 182)	θ value	8.11959e-09 (rank : 107)
Query Neighborhood Hits	349	Target Neighborhood Hits	324	Shared Neighborhood Hits	311
SwissProt Accessions	P17481, Q9H1I2	Gene names	HOXB8, HOX2D
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4).

GSCL_HUMAN
NC score	0.872002 (rank : 183)	θ value	0.00020696 (rank : 238)
Query Neighborhood Hits	349	Target Neighborhood Hits	343	Shared Neighborhood Hits	322
SwissProt Accessions	O15499	Gene names	GSCL
Domain Architecture
Description	Homeobox protein goosecoid-like (GSC-2).

ALX4_MOUSE
NC score	0.869165 (rank : 184)	θ value	2.36244e-08 (rank : 127)
Query Neighborhood Hits	349	Target Neighborhood Hits	369	Shared Neighborhood Hits	331
SwissProt Accessions	O35137	Gene names	Alx4
Domain Architecture
Description	Homeobox protein aristaless-like 4 (ALX-4).

HXA6_MOUSE
NC score	0.869130 (rank : 185)	θ value	1.99992e-07 (rank : 191)
Query Neighborhood Hits	349	Target Neighborhood Hits	304	Shared Neighborhood Hits	294
SwissProt Accessions	P09092, Q9JI98	Gene names	Hoxa6, Hox-1.2, Hoxa-6
Domain Architecture
Description	Homeobox protein Hox-A6 (Hox-1.2) (M5-4).

HXD8_HUMAN
NC score	0.868958 (rank : 186)	θ value	6.87365e-08 (rank : 169)
Query Neighborhood Hits	349	Target Neighborhood Hits	338	Shared Neighborhood Hits	310
SwissProt Accessions	P13378	Gene names	HOXD8, HOX4E
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4).

HXA6_HUMAN
NC score	0.868588 (rank : 187)	θ value	1.99992e-07 (rank : 190)
Query Neighborhood Hits	349	Target Neighborhood Hits	309	Shared Neighborhood Hits	298
SwissProt Accessions	P31267, Q9UPM0	Gene names	HOXA6, HOX1B
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A6 (Hox-1B).

HXD8_MOUSE
NC score	0.868508 (rank : 188)	θ value	8.97725e-08 (rank : 177)
Query Neighborhood Hits	349	Target Neighborhood Hits	333	Shared Neighborhood Hits	309
SwissProt Accessions	P23463	Gene names	Hoxd8, Hox-4.3, Hoxd-8
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4).

PHX2B_HUMAN
NC score	0.867519 (rank : 189)	θ value	3.64472e-09 (rank : 97)
Query Neighborhood Hits	349	Target Neighborhood Hits	407	Shared Neighborhood Hits	313
SwissProt Accessions	Q99453, Q6PJD9	Gene names	PHOX2B, PMX2B
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

PHX2B_MOUSE
NC score	0.867519 (rank : 190)	θ value	3.64472e-09 (rank : 98)
Query Neighborhood Hits	349	Target Neighborhood Hits	407	Shared Neighborhood Hits	313
SwissProt Accessions	O35690	Gene names	Phox2b, Pmx2b
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

ALX4_HUMAN
NC score	0.867468 (rank : 191)	θ value	2.36244e-08 (rank : 126)
Query Neighborhood Hits	349	Target Neighborhood Hits	394	Shared Neighborhood Hits	328
SwissProt Accessions	Q9H161, Q96JN7, Q9H198, Q9HAY9	Gene names	ALX4, KIAA1788
Domain Architecture
Description	Homeobox protein aristaless-like 4.

HXB9_HUMAN
NC score	0.866787 (rank : 192)	θ value	1.80886e-08 (rank : 121)
Query Neighborhood Hits	349	Target Neighborhood Hits	344	Shared Neighborhood Hits	307
SwissProt Accessions	P17482, Q9H1I1	Gene names	HOXB9, HOX2E
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5).

PROP1_HUMAN
NC score	0.866543 (rank : 193)	θ value	1.53129e-07 (rank : 188)
Query Neighborhood Hits	349	Target Neighborhood Hits	354	Shared Neighborhood Hits	333
SwissProt Accessions	O75360	Gene names	PROP1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

HXB9_MOUSE
NC score	0.865678 (rank : 194)	θ value	1.80886e-08 (rank : 122)
Query Neighborhood Hits	349	Target Neighborhood Hits	344	Shared Neighborhood Hits	306
SwissProt Accessions	P20615	Gene names	Hoxb9, Hox-2.5, Hoxb-9
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2.5).

PRRX2_HUMAN
NC score	0.863691 (rank : 195)	θ value	1.53129e-07 (rank : 189)
Query Neighborhood Hits	349	Target Neighborhood Hits	348	Shared Neighborhood Hits	320
SwissProt Accessions	Q99811, Q9UIB3	Gene names	PRRX2, PMX2, PRX2
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Paired-related homeobox protein 2).

HXC9_MOUSE
NC score	0.863439 (rank : 196)	θ value	3.64472e-09 (rank : 96)
Query Neighborhood Hits	349	Target Neighborhood Hits	338	Shared Neighborhood Hits	308
SwissProt Accessions	P09633	Gene names	Hoxc9, Hox-3.2, Hoxc-9
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3.2).

HXC9_HUMAN
NC score	0.863280 (rank : 197)	θ value	3.64472e-09 (rank : 95)
Query Neighborhood Hits	349	Target Neighborhood Hits	339	Shared Neighborhood Hits	308
SwissProt Accessions	P31274, Q9H1I0	Gene names	HOXC9, HOX3B
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3B).

HXA13_MOUSE
NC score	0.859593 (rank : 198)	θ value	3.77169e-06 (rank : 220)
Query Neighborhood Hits	349	Target Neighborhood Hits	351	Shared Neighborhood Hits	312
SwissProt Accessions	Q62424	Gene names	Hoxa13, Hox-1.10
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1.10).

PRRX2_MOUSE
NC score	0.858506 (rank : 199)	θ value	5.26297e-08 (rank : 161)
Query Neighborhood Hits	349	Target Neighborhood Hits	351	Shared Neighborhood Hits	322
SwissProt Accessions	Q06348, Q61651	Gene names	Prrx2, Prx2, S8
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Homeobox protein S8).

HXA13_HUMAN
NC score	0.857918 (rank : 200)	θ value	3.77169e-06 (rank : 219)
Query Neighborhood Hits	349	Target Neighborhood Hits	353	Shared Neighborhood Hits	312
SwissProt Accessions	P31271, O43371	Gene names	HOXA13, HOX1J
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1J).

CART1_HUMAN
NC score	0.857199 (rank : 201)	θ value	1.17247e-07 (rank : 179)
Query Neighborhood Hits	349	Target Neighborhood Hits	348	Shared Neighborhood Hits	324
SwissProt Accessions	Q15699, Q546C8, Q96FH4	Gene names	CART1
Domain Architecture
Description	Cartilage homeoprotein 1 (CART-1).

PROP1_MOUSE
NC score	0.856314 (rank : 202)	θ value	4.45536e-07 (rank : 199)
Query Neighborhood Hits	349	Target Neighborhood Hits	361	Shared Neighborhood Hits	331
SwissProt Accessions	P97458	Gene names	Prop1, Prop-1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

CART1_MOUSE
NC score	0.856119 (rank : 203)	θ value	1.17247e-07 (rank : 180)
Query Neighborhood Hits	349	Target Neighborhood Hits	344	Shared Neighborhood Hits	321
SwissProt Accessions	Q8C8B0, Q8C370	Gene names	Cart1
Domain Architecture	No domain graphic available
Description	Cartilage homeoprotein 1 (CART-1).

CRX_HUMAN
NC score	0.855241 (rank : 204)	θ value	8.97725e-08 (rank : 172)
Query Neighborhood Hits	349	Target Neighborhood Hits	360	Shared Neighborhood Hits	321
SwissProt Accessions	O43186	Gene names	CRX, CORD2
Domain Architecture
Description	Cone-rod homeobox protein.

ALX3_MOUSE
NC score	0.853893 (rank : 205)	θ value	8.97725e-08 (rank : 170)
Query Neighborhood Hits	349	Target Neighborhood Hits	386	Shared Neighborhood Hits	329
SwissProt Accessions	O70137	Gene names	Alx3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

GSCL_MOUSE
NC score	0.853742 (rank : 206)	θ value	0.000270298 (rank : 239)
Query Neighborhood Hits	349	Target Neighborhood Hits	339	Shared Neighborhood Hits	322
SwissProt Accessions	P56916	Gene names	Gscl
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid-like (GSC-2).

CRX_MOUSE
NC score	0.852261 (rank : 207)	θ value	8.97725e-08 (rank : 173)
Query Neighborhood Hits	349	Target Neighborhood Hits	359	Shared Neighborhood Hits	318
SwissProt Accessions	O54751	Gene names	Crx
Domain Architecture
Description	Cone-rod homeobox protein.

ALX3_HUMAN
NC score	0.851721 (rank : 208)	θ value	3.41135e-07 (rank : 194)
Query Neighborhood Hits	349	Target Neighborhood Hits	380	Shared Neighborhood Hits	330
SwissProt Accessions	O95076, O95075	Gene names	ALX3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

PRRX1_HUMAN
NC score	0.851681 (rank : 209)	θ value	2.36244e-08 (rank : 139)
Query Neighborhood Hits	349	Target Neighborhood Hits	347	Shared Neighborhood Hits	322
SwissProt Accessions	P54821, O60807	Gene names	PRRX1, PMX1
Domain Architecture
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein PHOX1).

PRRX1_MOUSE
NC score	0.851646 (rank : 210)	θ value	2.36244e-08 (rank : 140)
Query Neighborhood Hits	349	Target Neighborhood Hits	346	Shared Neighborhood Hits	320
SwissProt Accessions	P63013, P43271, Q02810	Gene names	Prrx1, Pmx, Pmx1
Domain Architecture	No domain graphic available
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein mHox) (Homeobox protein K-2).

OTX1_HUMAN
NC score	0.848410 (rank : 211)	θ value	9.92553e-07 (rank : 208)
Query Neighborhood Hits	349	Target Neighborhood Hits	379	Shared Neighborhood Hits	317
SwissProt Accessions	P32242, Q53TG6	Gene names	OTX1
Domain Architecture
Description	Homeobox protein OTX1.

HXC13_HUMAN
NC score	0.848147 (rank : 212)	θ value	1.29631e-06 (rank : 213)
Query Neighborhood Hits	349	Target Neighborhood Hits	336	Shared Neighborhood Hits	317
SwissProt Accessions	P31276, Q96J32, Q9NR24, Q9NYD5	Gene names	HOXC13, HOX3G
Domain Architecture
Description	Homeobox protein Hox-C13 (Hox-3G).

HXC13_MOUSE
NC score	0.848009 (rank : 213)	θ value	1.29631e-06 (rank : 214)
Query Neighborhood Hits	349	Target Neighborhood Hits	337	Shared Neighborhood Hits	317
SwissProt Accessions	P50207, Q53Z78, Q920I7	Gene names	Hoxc13, Hoxc-13
Domain Architecture
Description	Homeobox protein Hox-C13.

HXB13_MOUSE
NC score	0.844021 (rank : 214)	θ value	1.43324e-05 (rank : 233)
Query Neighborhood Hits	349	Target Neighborhood Hits	384	Shared Neighborhood Hits	309
SwissProt Accessions	P70321, Q80Y12	Gene names	Hoxb13
Domain Architecture
Description	Homeobox protein Hox-B13.

OTX1_MOUSE
NC score	0.842806 (rank : 215)	θ value	9.92553e-07 (rank : 209)
Query Neighborhood Hits	349	Target Neighborhood Hits	372	Shared Neighborhood Hits	319
SwissProt Accessions	P80205	Gene names	Otx1, Otx-1
Domain Architecture
Description	Homeobox protein OTX1.

HXB13_HUMAN
NC score	0.842390 (rank : 216)	θ value	1.43324e-05 (rank : 232)
Query Neighborhood Hits	349	Target Neighborhood Hits	377	Shared Neighborhood Hits	314
SwissProt Accessions	Q92826, Q96QM4, Q99810	Gene names	HOXB13
Domain Architecture
Description	Homeobox protein Hox-B13.

HXD13_HUMAN
NC score	0.841279 (rank : 217)	θ value	6.43352e-06 (rank : 222)
Query Neighborhood Hits	349	Target Neighborhood Hits	332	Shared Neighborhood Hits	309
SwissProt Accessions	P35453	Gene names	HOXD13, HOX4I
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4I).

HXD13_MOUSE
NC score	0.841042 (rank : 218)	θ value	6.43352e-06 (rank : 223)
Query Neighborhood Hits	349	Target Neighborhood Hits	324	Shared Neighborhood Hits	309
SwissProt Accessions	P70217, Q2VPB0, Q2VPB1, Q64177	Gene names	Hoxd13, Hox-4.8
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4.8).

CHX10_MOUSE
NC score	0.838522 (rank : 219)	θ value	3.77169e-06 (rank : 218)
Query Neighborhood Hits	349	Target Neighborhood Hits	340	Shared Neighborhood Hits	311
SwissProt Accessions	Q61412	Gene names	Chx10, Vsx2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

CHX10_HUMAN
NC score	0.838153 (rank : 220)	θ value	3.77169e-06 (rank : 217)
Query Neighborhood Hits	349	Target Neighborhood Hits	340	Shared Neighborhood Hits	312
SwissProt Accessions	P58304	Gene names	CHX10, VSX2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

VSX1_HUMAN
NC score	0.834809 (rank : 221)	θ value	1.69304e-06 (rank : 215)
Query Neighborhood Hits	349	Target Neighborhood Hits	344	Shared Neighborhood Hits	310
SwissProt Accessions	Q9NZR4, Q5TF40, Q5TF41, Q9HCU3, Q9NU27	Gene names	VSX1, RINX
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

VSX1_MOUSE
NC score	0.834494 (rank : 222)	θ value	2.21117e-06 (rank : 216)
Query Neighborhood Hits	349	Target Neighborhood Hits	356	Shared Neighborhood Hits	305
SwissProt Accessions	Q91V10	Gene names	Vsx1, Rinx
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

OTX2_MOUSE
NC score	0.826939 (rank : 223)	θ value	5.81887e-07 (rank : 202)
Query Neighborhood Hits	349	Target Neighborhood Hits	345	Shared Neighborhood Hits	317
SwissProt Accessions	P80206	Gene names	Otx2, Otx-2
Domain Architecture
Description	Homeobox protein OTX2.

OTX2_HUMAN
NC score	0.826392 (rank : 224)	θ value	5.81887e-07 (rank : 201)
Query Neighborhood Hits	349	Target Neighborhood Hits	341	Shared Neighborhood Hits	315
SwissProt Accessions	P32243, Q6GTV3, Q9HAW3, Q9P2R1	Gene names	OTX2
Domain Architecture
Description	Homeobox protein OTX2.

DUX1_HUMAN
NC score	0.809092 (rank : 225)	θ value	1.43324e-05 (rank : 230)
Query Neighborhood Hits	349	Target Neighborhood Hits	330	Shared Neighborhood Hits	323
SwissProt Accessions	O43812	Gene names	DUX1
Domain Architecture	No domain graphic available
Description	Double homeobox protein 1.

DUX5_HUMAN
NC score	0.804429 (rank : 226)	θ value	1.43324e-05 (rank : 231)
Query Neighborhood Hits	349	Target Neighborhood Hits	330	Shared Neighborhood Hits	323
SwissProt Accessions	Q96PT3	Gene names	DUX5
Domain Architecture	No domain graphic available
Description	Double homeobox protein 5.

DUX3_HUMAN
NC score	0.797848 (rank : 227)	θ value	5.44631e-05 (rank : 234)
Query Neighborhood Hits	349	Target Neighborhood Hits	312	Shared Neighborhood Hits	306
SwissProt Accessions	Q96PT4, Q9UND2	Gene names	DUX3
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 3.

DUX4_HUMAN
NC score	0.771806 (rank : 228)	θ value	7.1131e-05 (rank : 235)
Query Neighborhood Hits	349	Target Neighborhood Hits	403	Shared Neighborhood Hits	321
SwissProt Accessions	Q9UBX2	Gene names	DUX4, DUX10
Domain Architecture	No domain graphic available
Description	Double homeobox protein 4 (Double homeobox protein 10) (Double homeobox protein 4/10).

PAX7_HUMAN
NC score	0.767654 (rank : 229)	θ value	1.53129e-07 (rank : 184)
Query Neighborhood Hits	349	Target Neighborhood Hits	456	Shared Neighborhood Hits	336
SwissProt Accessions	P23759	Gene names	PAX7, HUP1
Domain Architecture
Description	Paired box protein Pax-7 (HUP1).

PAX7_MOUSE
NC score	0.767205 (rank : 230)	θ value	1.53129e-07 (rank : 185)
Query Neighborhood Hits	349	Target Neighborhood Hits	422	Shared Neighborhood Hits	336
SwissProt Accessions	P47239, Q9ES16	Gene names	Pax7, Pax-7
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-7.

PAX3_MOUSE
NC score	0.764559 (rank : 231)	θ value	3.08544e-08 (rank : 148)
Query Neighborhood Hits	349	Target Neighborhood Hits	478	Shared Neighborhood Hits	332
SwissProt Accessions	P24610, Q3UFQ9, Q8BRE7, Q9CXI6	Gene names	Pax3, Pax-3
Domain Architecture
Description	Paired box protein Pax-3.

PAX3_HUMAN
NC score	0.763526 (rank : 232)	θ value	3.08544e-08 (rank : 147)
Query Neighborhood Hits	349	Target Neighborhood Hits	513	Shared Neighborhood Hits	332
SwissProt Accessions	P23760, Q16448	Gene names	PAX3, HUP2
Domain Architecture
Description	Paired box protein Pax-3 (HUP2).

PAX4_HUMAN
NC score	0.754855 (rank : 233)	θ value	0.00390308 (rank : 258)
Query Neighborhood Hits	349	Target Neighborhood Hits	367	Shared Neighborhood Hits	324
SwissProt Accessions	O43316, O95161, Q6B0H0	Gene names	PAX4
Domain Architecture
Description	Paired box protein Pax-4.

PAX4_MOUSE
NC score	0.752088 (rank : 234)	θ value	0.00298849 (rank : 254)
Query Neighborhood Hits	349	Target Neighborhood Hits	370	Shared Neighborhood Hits	322
SwissProt Accessions	P32115, P97341, Q9QUR1, Q9R091	Gene names	Pax4, Pax-4
Domain Architecture
Description	Paired box protein Pax-4.

PAX6_HUMAN
NC score	0.746907 (rank : 235)	θ value	9.92553e-07 (rank : 210)
Query Neighborhood Hits	349	Target Neighborhood Hits	383	Shared Neighborhood Hits	321
SwissProt Accessions	P26367, Q6N006, Q99413	Gene names	PAX6, AN2
Domain Architecture
Description	Paired box protein Pax-6 (Oculorhombin) (Aniridia type II protein).

PAX6_MOUSE
NC score	0.746907 (rank : 236)	θ value	9.92553e-07 (rank : 211)
Query Neighborhood Hits	349	Target Neighborhood Hits	383	Shared Neighborhood Hits	321
SwissProt Accessions	P63015, P32117, P70601, Q62222, Q64037, Q8CEI5, Q8VDB5, Q921Q8	Gene names	Pax6, Pax-6, Sey
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-6 (Oculorhombin).

ZFHX2_HUMAN
NC score	0.582552 (rank : 237)	θ value	0.000121331 (rank : 237)
Query Neighborhood Hits	349	Target Neighborhood Hits	1178	Shared Neighborhood Hits	319
SwissProt Accessions	Q9C0A1	Gene names	ZFHX2, KIAA1762
Domain Architecture
Description	Zinc finger homeobox protein 2.

LHX2_HUMAN
NC score	0.549816 (rank : 238)	θ value	4.92598e-06 (rank : 221)
Query Neighborhood Hits	349	Target Neighborhood Hits	432	Shared Neighborhood Hits	316
SwissProt Accessions	P50458, O95860, Q8N1Z3	Gene names	LHX2, LH2
Domain Architecture
Description	LIM/homeobox protein Lhx2 (Homeobox protein LH-2).

LHX2_MOUSE
NC score	0.548459 (rank : 239)	θ value	6.43352e-06 (rank : 224)
Query Neighborhood Hits	349	Target Neighborhood Hits	431	Shared Neighborhood Hits	315
SwissProt Accessions	Q9Z0S2	Gene names	Lhx2
Domain Architecture
Description	LIM/homeobox protein Lhx2.

LHX9_MOUSE
NC score	0.530843 (rank : 240)	θ value	1.09739e-05 (rank : 228)
Query Neighborhood Hits	349	Target Neighborhood Hits	445	Shared Neighborhood Hits	313
SwissProt Accessions	Q9WUH2, Q9QYQ5, Q9QYQ6, Q9QZ00, Q9WU44	Gene names	Lhx9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

LHX9_HUMAN
NC score	0.530579 (rank : 241)	θ value	1.09739e-05 (rank : 227)
Query Neighborhood Hits	349	Target Neighborhood Hits	444	Shared Neighborhood Hits	313
SwissProt Accessions	Q9NQ69, Q5VUE3, Q9BYU6, Q9NQ70	Gene names	LHX9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

LHX6_MOUSE
NC score	0.528170 (rank : 242)	θ value	0.00102713 (rank : 244)
Query Neighborhood Hits	349	Target Neighborhood Hits	399	Shared Neighborhood Hits	297
SwissProt Accessions	O88706	Gene names	Lhx6
Domain Architecture
Description	LIM/homeobox protein Lhx6.

LHX5_HUMAN
NC score	0.527676 (rank : 243)	θ value	0.00509761 (rank : 260)
Query Neighborhood Hits	349	Target Neighborhood Hits	453	Shared Neighborhood Hits	327
SwissProt Accessions	Q9H2C1	Gene names	LHX5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

LHX5_MOUSE
NC score	0.527243 (rank : 244)	θ value	0.00509761 (rank : 261)
Query Neighborhood Hits	349	Target Neighborhood Hits	456	Shared Neighborhood Hits	327
SwissProt Accessions	P61375, P50459	Gene names	Lhx5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

LHX3_HUMAN
NC score	0.526683 (rank : 245)	θ value	0.00665767 (rank : 264)
Query Neighborhood Hits	349	Target Neighborhood Hits	474	Shared Neighborhood Hits	331
SwissProt Accessions	Q9UBR4, Q9NZB5, Q9P0I8, Q9P0I9	Gene names	LHX3
Domain Architecture
Description	LIM/homeobox protein Lhx3.

LHX61_HUMAN
NC score	0.525301 (rank : 246)	θ value	9.29e-05 (rank : 236)
Query Neighborhood Hits	349	Target Neighborhood Hits	412	Shared Neighborhood Hits	301
SwissProt Accessions	Q9UPM6, Q5T7S8, Q9NTK3, Q9UPM5	Gene names	LHX6, LHX6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1 (Lhx6).

LHX1_MOUSE
NC score	0.524087 (rank : 247)	θ value	0.00665767 (rank : 263)
Query Neighborhood Hits	349	Target Neighborhood Hits	453	Shared Neighborhood Hits	327
SwissProt Accessions	P63006, P36199	Gene names	Lhx1, Lim-1, Lim1
Domain Architecture	No domain graphic available
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

LHX1_HUMAN
NC score	0.523462 (rank : 248)	θ value	0.00665767 (rank : 262)
Query Neighborhood Hits	349	Target Neighborhood Hits	453	Shared Neighborhood Hits	327
SwissProt Accessions	P48742, Q3MIW0	Gene names	LHX1, LIM1
Domain Architecture
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

LHX3_MOUSE
NC score	0.522219 (rank : 249)	θ value	0.00665767 (rank : 265)
Query Neighborhood Hits	349	Target Neighborhood Hits	451	Shared Neighborhood Hits	325
SwissProt Accessions	P50481, Q61800, Q61801	Gene names	Lhx3, Lim-3, Lim3, Plim
Domain Architecture
Description	LIM/homeobox protein Lhx3 (Homeobox protein LIM-3) (Homeobox protein P-LIM) (LIM homeobox protein 3).

LHX4_HUMAN
NC score	0.520421 (rank : 250)	θ value	0.0431538 (rank : 281)
Query Neighborhood Hits	349	Target Neighborhood Hits	455	Shared Neighborhood Hits	326
SwissProt Accessions	Q969G2, Q8NHE0, Q8TCJ1, Q8WWX2, Q969W2	Gene names	LHX4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

LHX4_MOUSE
NC score	0.519932 (rank : 251)	θ value	0.0431538 (rank : 282)
Query Neighborhood Hits	349	Target Neighborhood Hits	457	Shared Neighborhood Hits	326
SwissProt Accessions	P53776, O08916, Q9R280	Gene names	Lhx4, Gsh-4, Gsh4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

PO6F2_MOUSE
NC score	0.517843 (rank : 252)	θ value	0.00102713 (rank : 245)
Query Neighborhood Hits	349	Target Neighborhood Hits	639	Shared Neighborhood Hits	306
SwissProt Accessions	Q8BJI4	Gene names	Pou6f2
Domain Architecture	No domain graphic available
Description	POU domain, class 6, transcription factor 2.

PO6F2_HUMAN
NC score	0.517449 (rank : 253)	θ value	0.00134147 (rank : 249)
Query Neighborhood Hits	349	Target Neighborhood Hits	618	Shared Neighborhood Hits	303
SwissProt Accessions	P78424, P78425, Q75ME8, Q86UM6, Q9UDS7	Gene names	POU6F2, RPF1
Domain Architecture
Description	POU domain, class 6, transcription factor 2 (Retina-derived POU-domain factor 1) (RPF-1).

LMX1A_HUMAN
NC score	0.512888 (rank : 254)	θ value	0.0431538 (rank : 283)
Query Neighborhood Hits	349	Target Neighborhood Hits	406	Shared Neighborhood Hits	313
SwissProt Accessions	Q8TE12, Q8TE11	Gene names	LMX1A
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

LMX1A_MOUSE
NC score	0.510722 (rank : 255)	θ value	0.0736092 (rank : 290)
Query Neighborhood Hits	349	Target Neighborhood Hits	405	Shared Neighborhood Hits	312
SwissProt Accessions	Q9JKU8	Gene names	Lmx1a
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

DUX2_HUMAN
NC score	0.504406 (rank : 256)	θ value	θ > 10 (rank : 350)
Query Neighborhood Hits	349	Target Neighborhood Hits	173	Shared Neighborhood Hits	170
SwissProt Accessions	O75505	Gene names	DUX2
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 2.

LHX8_MOUSE
NC score	0.500502 (rank : 257)	θ value	0.00298849 (rank : 253)
Query Neighborhood Hits	349	Target Neighborhood Hits	406	Shared Neighborhood Hits	298
SwissProt Accessions	O35652, O70163, O88707	Gene names	Lhx8, Lhx7
Domain Architecture
Description	LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3).

PO6F1_HUMAN
NC score	0.494907 (rank : 258)	θ value	0.00390308 (rank : 259)
Query Neighborhood Hits	349	Target Neighborhood Hits	370	Shared Neighborhood Hits	303
SwissProt Accessions	Q14863	Gene names	POU6F1, BRN5, MPOU, TCFB1
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (mPOU homeobox protein) (Brain-specific homeobox/POU domain protein 5) (Brain-5) (Brn-5 protein).

LHX61_MOUSE
NC score	0.491175 (rank : 259)	θ value	0.000270298 (rank : 240)
Query Neighborhood Hits	349	Target Neighborhood Hits	396	Shared Neighborhood Hits	283
SwissProt Accessions	Q9R1R0, Q9R1R1	Gene names	Lhx6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1.

LMX1B_MOUSE
NC score	0.489251 (rank : 260)	θ value	0.0330416 (rank : 276)
Query Neighborhood Hits	349	Target Neighborhood Hits	394	Shared Neighborhood Hits	305
SwissProt Accessions	O88609	Gene names	Lmx1b
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

LMX1B_HUMAN
NC score	0.489146 (rank : 261)	θ value	0.0330416 (rank : 275)
Query Neighborhood Hits	349	Target Neighborhood Hits	404	Shared Neighborhood Hits	306
SwissProt Accessions	O60663, O75463	Gene names	LMX1B
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

PO6F1_MOUSE
NC score	0.478465 (rank : 262)	θ value	0.00228821 (rank : 252)
Query Neighborhood Hits	349	Target Neighborhood Hits	581	Shared Neighborhood Hits	304
SwissProt Accessions	Q07916, Q91XK3	Gene names	Pou6f1, Emb
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (Octamer-binding transcription factor EMB) (Transcription regulatory protein MCP-1).

PO2F3_MOUSE
NC score	0.445801 (rank : 263)	θ value	0.00175202 (rank : 251)
Query Neighborhood Hits	349	Target Neighborhood Hits	328	Shared Neighborhood Hits	295
SwissProt Accessions	P31362	Gene names	Pou2f3, Epoc1, Oct11, Otf-11, Otf11
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Epoc-1).

PO2F3_HUMAN
NC score	0.442756 (rank : 264)	θ value	0.00134147 (rank : 248)
Query Neighborhood Hits	349	Target Neighborhood Hits	319	Shared Neighborhood Hits	293
SwissProt Accessions	Q9UKI9, Q9UKR7, Q9Y504	Gene names	POU2F3, OTF11, PLA1
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Transcription factor Skn-1) (PLA-1 protein).

PO2F1_HUMAN
NC score	0.439773 (rank : 265)	θ value	0.0113563 (rank : 269)
Query Neighborhood Hits	349	Target Neighborhood Hits	426	Shared Neighborhood Hits	307
SwissProt Accessions	P14859, Q5TBT7, Q6PK46, Q8NEU9, Q9BPV1	Gene names	POU2F1, OCT1, OTF1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

PO2F2_MOUSE
NC score	0.436240 (rank : 266)	θ value	0.00298849 (rank : 256)
Query Neighborhood Hits	349	Target Neighborhood Hits	353	Shared Neighborhood Hits	289
SwissProt Accessions	Q00196, Q00197, Q00198, Q00199, Q00200, Q00201, Q05882, Q61995, Q61996, Q64245	Gene names	Pou2f2, Oct2, Otf2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

PO2F2_HUMAN
NC score	0.435551 (rank : 267)	θ value	0.00298849 (rank : 255)
Query Neighborhood Hits	349	Target Neighborhood Hits	379	Shared Neighborhood Hits	291
SwissProt Accessions	P09086, Q16648, Q9BRS4	Gene names	POU2F2, OCT2, OTF2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

PO2F1_MOUSE
NC score	0.426718 (rank : 268)	θ value	0.00665767 (rank : 266)
Query Neighborhood Hits	349	Target Neighborhood Hits	408	Shared Neighborhood Hits	300
SwissProt Accessions	P25425, Q61994, Q63891, Q6Y681, Q7TSD0, Q8BT04, Q8K570, Q99JH0, Q9WTZ4, Q9WTZ5, Q9WTZ6	Gene names	Pou2f1, Oct-1, Otf-1, Otf1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

ISL2_MOUSE
NC score	0.422973 (rank : 269)	θ value	1.38821 (rank : 316)
Query Neighborhood Hits	349	Target Neighborhood Hits	426	Shared Neighborhood Hits	312
SwissProt Accessions	Q9CXV0	Gene names	Isl2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

ISL2_HUMAN
NC score	0.422885 (rank : 270)	θ value	1.06291 (rank : 310)
Query Neighborhood Hits	349	Target Neighborhood Hits	435	Shared Neighborhood Hits	314
SwissProt Accessions	Q96A47	Gene names	ISL2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

ISL1_HUMAN
NC score	0.422647 (rank : 271)	θ value	0.21417 (rank : 297)
Query Neighborhood Hits	349	Target Neighborhood Hits	421	Shared Neighborhood Hits	308
SwissProt Accessions	P61371, P20663, P47894	Gene names	ISL1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

ISL1_MOUSE
NC score	0.422647 (rank : 272)	θ value	0.21417 (rank : 298)
Query Neighborhood Hits	349	Target Neighborhood Hits	421	Shared Neighborhood Hits	308
SwissProt Accessions	P61372, P20663, P47894, Q812D8	Gene names	Isl1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

PIT1_HUMAN
NC score	0.416387 (rank : 273)	θ value	0.62314 (rank : 305)
Query Neighborhood Hits	349	Target Neighborhood Hits	292	Shared Neighborhood Hits	277
SwissProt Accessions	P28069, O75757, Q15132, Q15133, Q9UEL3	Gene names	POU1F1, GHF1, PIT1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

ATBF1_HUMAN
NC score	0.409082 (rank : 274)	θ value	0.000786445 (rank : 241)
Query Neighborhood Hits	349	Target Neighborhood Hits	1547	Shared Neighborhood Hits	335
SwissProt Accessions	Q15911, O15101, Q13719	Gene names	ATBF1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

ATBF1_MOUSE
NC score	0.405725 (rank : 275)	θ value	0.000786445 (rank : 242)
Query Neighborhood Hits	349	Target Neighborhood Hits	1841	Shared Neighborhood Hits	335
SwissProt Accessions	Q61329	Gene names	Atbf1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

PIT1_MOUSE
NC score	0.404776 (rank : 276)	θ value	2.36792 (rank : 322)
Query Neighborhood Hits	349	Target Neighborhood Hits	313	Shared Neighborhood Hits	292
SwissProt Accessions	Q00286	Gene names	Pou1f1, Pit-1, Pit1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

SIX2_MOUSE
NC score	0.403610 (rank : 277)	θ value	0.0330416 (rank : 280)
Query Neighborhood Hits	349	Target Neighborhood Hits	376	Shared Neighborhood Hits	315
SwissProt Accessions	Q62232, P70179	Gene names	Six2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

PBX2_MOUSE
NC score	0.403535 (rank : 278)	θ value	0.163984 (rank : 296)
Query Neighborhood Hits	349	Target Neighborhood Hits	341	Shared Neighborhood Hits	293
SwissProt Accessions	O35984	Gene names	Pbx2
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2).

PBX2_HUMAN
NC score	0.402065 (rank : 279)	θ value	0.163984 (rank : 295)
Query Neighborhood Hits	349	Target Neighborhood Hits	350	Shared Neighborhood Hits	293
SwissProt Accessions	P40425	Gene names	PBX2, G17
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2) (Protein G17).

PBX4_MOUSE
NC score	0.391873 (rank : 280)	θ value	0.62314 (rank : 304)
Query Neighborhood Hits	349	Target Neighborhood Hits	324	Shared Neighborhood Hits	285
SwissProt Accessions	Q99NE9, Q8CFL2, Q99NE8	Gene names	Pbx4
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 4 (Homeobox protein PBX4).

SIX4_MOUSE
NC score	0.388066 (rank : 281)	θ value	0.0736092 (rank : 292)
Query Neighborhood Hits	349	Target Neighborhood Hits	341	Shared Neighborhood Hits	285
SwissProt Accessions	Q61321, Q61322, Q61323	Gene names	Six4, Arec3
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4) (Skeletal muscle-specific ARE-binding protein AREC3).

SIX2_HUMAN
NC score	0.382047 (rank : 282)	θ value	0.0330416 (rank : 279)
Query Neighborhood Hits	349	Target Neighborhood Hits	345	Shared Neighborhood Hits	295
SwissProt Accessions	Q9NPC8, Q9BXH7	Gene names	SIX2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

SIX1_MOUSE
NC score	0.378782 (rank : 283)	θ value	0.0193708 (rank : 273)
Query Neighborhood Hits	349	Target Neighborhood Hits	341	Shared Neighborhood Hits	309
SwissProt Accessions	Q62231, Q8CIL7	Gene names	Six1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

SIX1_HUMAN
NC score	0.378569 (rank : 284)	θ value	0.0193708 (rank : 272)
Query Neighborhood Hits	349	Target Neighborhood Hits	343	Shared Neighborhood Hits	309
SwissProt Accessions	Q15475, Q96H64	Gene names	SIX1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

PBX3_MOUSE
NC score	0.377592 (rank : 285)	θ value	0.365318 (rank : 302)
Query Neighborhood Hits	349	Target Neighborhood Hits	306	Shared Neighborhood Hits	282
SwissProt Accessions	O35317, Q925W2	Gene names	Pbx3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX3_HUMAN
NC score	0.377547 (rank : 286)	θ value	0.365318 (rank : 301)
Query Neighborhood Hits	349	Target Neighborhood Hits	306	Shared Neighborhood Hits	282
SwissProt Accessions	P40426, Q96PF9, Q96PG0	Gene names	PBX3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX1_HUMAN
NC score	0.374970 (rank : 287)	θ value	0.0431538 (rank : 284)
Query Neighborhood Hits	349	Target Neighborhood Hits	317	Shared Neighborhood Hits	284
SwissProt Accessions	P40424	Gene names	PBX1, PRL
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1) (Homeobox protein PRL).

PBX1_MOUSE
NC score	0.374970 (rank : 288)	θ value	0.0431538 (rank : 285)
Query Neighborhood Hits	349	Target Neighborhood Hits	317	Shared Neighborhood Hits	284
SwissProt Accessions	P41778	Gene names	Pbx1, Pbx-1
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1).

SIX4_HUMAN
NC score	0.373641 (rank : 289)	θ value	0.0736092 (rank : 291)
Query Neighborhood Hits	349	Target Neighborhood Hits	342	Shared Neighborhood Hits	282
SwissProt Accessions	Q9UIU6	Gene names	SIX4
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4).

PO4F1_MOUSE
NC score	0.369663 (rank : 290)	θ value	1.06291 (rank : 314)
Query Neighborhood Hits	349	Target Neighborhood Hits	345	Shared Neighborhood Hits	295
SwissProt Accessions	P17208	Gene names	Pou4f1, Brn-3, Brn3, Brn3a
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Brn-3.0).

PO4F1_HUMAN
NC score	0.366166 (rank : 291)	θ value	1.06291 (rank : 313)
Query Neighborhood Hits	349	Target Neighborhood Hits	342	Shared Neighborhood Hits	295
SwissProt Accessions	Q01851, Q14986, Q15318	Gene names	POU4F1, BRN3A, RDC1
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Oct-T1) (Homeobox/POU domain protein RDC-1).

PO4F2_MOUSE
NC score	0.364601 (rank : 292)	θ value	4.03905 (rank : 333)
Query Neighborhood Hits	349	Target Neighborhood Hits	312	Shared Neighborhood Hits	291
SwissProt Accessions	Q63934, Q63954	Gene names	Pou4f2, Brn3b
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B) (Brn-3.2).

PO4F2_HUMAN
NC score	0.363560 (rank : 293)	θ value	4.03905 (rank : 332)
Query Neighborhood Hits	349	Target Neighborhood Hits	310	Shared Neighborhood Hits	291
SwissProt Accessions	Q12837, Q13883, Q14987	Gene names	POU4F2, BRN3B
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B).

PO4F3_MOUSE
NC score	0.362045 (rank : 294)	θ value	1.38821 (rank : 319)
Query Neighborhood Hits	349	Target Neighborhood Hits	311	Shared Neighborhood Hits	290
SwissProt Accessions	Q63955	Gene names	Pou4f3, Brn-3c, Brn3c
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

PO4F3_HUMAN
NC score	0.361665 (rank : 295)	θ value	1.38821 (rank : 318)
Query Neighborhood Hits	349	Target Neighborhood Hits	307	Shared Neighborhood Hits	290
SwissProt Accessions	Q15319, O60557	Gene names	POU4F3, BRN3C
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

PO3F3_HUMAN
NC score	0.339593 (rank : 296)	θ value	3.0926 (rank : 328)
Query Neighborhood Hits	349	Target Neighborhood Hits	311	Shared Neighborhood Hits	278
SwissProt Accessions	P20264, P78379	Gene names	POU3F3, BRN1, OTF8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

PO3F3_MOUSE
NC score	0.339585 (rank : 297)	θ value	3.0926 (rank : 329)
Query Neighborhood Hits	349	Target Neighborhood Hits	308	Shared Neighborhood Hits	278
SwissProt Accessions	P31361	Gene names	Pou3f3, Brn-1, Brn1, Otf8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

SIX6_HUMAN
NC score	0.335640 (rank : 298)	θ value	0.0563607 (rank : 289)
Query Neighborhood Hits	349	Target Neighborhood Hits	269	Shared Neighborhood Hits	245
SwissProt Accessions	O95475, Q9P1X8	Gene names	SIX6, OPTX2, SIX9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Homeodomain protein OPTX2).

PO3F2_MOUSE
NC score	0.335218 (rank : 299)	θ value	2.36792 (rank : 324)
Query Neighborhood Hits	349	Target Neighborhood Hits	313	Shared Neighborhood Hits	281
SwissProt Accessions	P31360	Gene names	Pou3f2, Brn-2, Brn2, Otf7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

PO3F2_HUMAN
NC score	0.335206 (rank : 300)	θ value	2.36792 (rank : 323)
Query Neighborhood Hits	349	Target Neighborhood Hits	308	Shared Neighborhood Hits	281
SwissProt Accessions	P20265, Q14960, Q86V54, Q9UJL0	Gene names	POU3F2, BRN2, OCT7, OTF7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

SIX3_HUMAN
NC score	0.333555 (rank : 301)	θ value	0.00665767 (rank : 267)
Query Neighborhood Hits	349	Target Neighborhood Hits	285	Shared Neighborhood Hits	259
SwissProt Accessions	O95343	Gene names	SIX3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX3_MOUSE
NC score	0.333500 (rank : 302)	θ value	0.00665767 (rank : 268)
Query Neighborhood Hits	349	Target Neighborhood Hits	289	Shared Neighborhood Hits	259
SwissProt Accessions	Q62233, P70176, P70177	Gene names	Six3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX6_MOUSE
NC score	0.329703 (rank : 303)	θ value	0.0736092 (rank : 293)
Query Neighborhood Hits	349	Target Neighborhood Hits	267	Shared Neighborhood Hits	246
SwissProt Accessions	Q9QZ28, O88423	Gene names	Six6, Optx2, Six9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Six9 protein).

PO5F1_MOUSE
NC score	0.329312 (rank : 304)	θ value	0.0193708 (rank : 271)
Query Neighborhood Hits	349	Target Neighborhood Hits	305	Shared Neighborhood Hits	266
SwissProt Accessions	P20263, Q63843	Gene names	Pou5f1, Oct-3, Oct-4, Otf-3, Otf3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4) (NF-A3).

PO5F1_HUMAN
NC score	0.323112 (rank : 305)	θ value	0.0148317 (rank : 270)
Query Neighborhood Hits	349	Target Neighborhood Hits	321	Shared Neighborhood Hits	276
SwissProt Accessions	Q01860, P31359, Q15167, Q15168, Q16422	Gene names	POU5F1, OCT3, OCT4, OTF3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4).

HOP_HUMAN
NC score	0.309389 (rank : 306)	θ value	θ > 10 (rank : 354)
Query Neighborhood Hits	349	Target Neighborhood Hits	107	Shared Neighborhood Hits	98
SwissProt Accessions	Q9BPY8, Q8N0V6, Q96CI1	Gene names	HOP, HOD, LAGY, NECC1, OB1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Lung cancer-associated Y protein) (Odd homeobox protein 1) (Not expressed in choriocarcinoma protein 1).

PO3F1_MOUSE
NC score	0.309341 (rank : 307)	θ value	1.06291 (rank : 312)
Query Neighborhood Hits	349	Target Neighborhood Hits	261	Shared Neighborhood Hits	245
SwissProt Accessions	P21952	Gene names	Pou3f1, Oct6, Otf-6, Otf6, Scip
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

PO3F1_HUMAN
NC score	0.306362 (rank : 308)	θ value	1.06291 (rank : 311)
Query Neighborhood Hits	349	Target Neighborhood Hits	256	Shared Neighborhood Hits	245
SwissProt Accessions	Q03052	Gene names	POU3F1, OCT6, OTF6
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

SIX5_HUMAN
NC score	0.301462 (rank : 309)	θ value	5.27518 (rank : 339)
Query Neighborhood Hits	349	Target Neighborhood Hits	386	Shared Neighborhood Hits	242
SwissProt Accessions	Q8N196	Gene names	SIX5, DMAHP
Domain Architecture	No domain graphic available
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein).

HOP_MOUSE
NC score	0.300766 (rank : 310)	θ value	θ > 10 (rank : 355)
Query Neighborhood Hits	349	Target Neighborhood Hits	102	Shared Neighborhood Hits	92
SwissProt Accessions	Q8R1H0, Q8C1N5, Q8CJ22	Gene names	Hop, Hod, Ob1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Homeobox-only protein) (Odd homeobox protein 1) (mOB1).

IRX6_MOUSE
NC score	0.299111 (rank : 311)	θ value	θ > 10 (rank : 362)
Query Neighborhood Hits	349	Target Neighborhood Hits	256	Shared Neighborhood Hits	228
SwissProt Accessions	Q9ER75	Gene names	Irx6, Irxb3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

PO3F4_MOUSE
NC score	0.289173 (rank : 312)	θ value	8.99809 (rank : 349)
Query Neighborhood Hits	349	Target Neighborhood Hits	281	Shared Neighborhood Hits	246
SwissProt Accessions	P62515, P25216	Gene names	Pou3f4, Brn-4, Brn4, Otf9
Domain Architecture	No domain graphic available
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

PO3F4_HUMAN
NC score	0.287632 (rank : 313)	θ value	8.99809 (rank : 348)
Query Neighborhood Hits	349	Target Neighborhood Hits	297	Shared Neighborhood Hits	246
SwissProt Accessions	P49335, Q5H9G9, Q99410	Gene names	POU3F4, BRN4, OTF9
Domain Architecture
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

IRX6_HUMAN
NC score	0.287325 (rank : 314)	θ value	8.99809 (rank : 347)
Query Neighborhood Hits	349	Target Neighborhood Hits	262	Shared Neighborhood Hits	231
SwissProt Accessions	P78412, Q7Z2K0	Gene names	IRX6, IRX7, IRXB3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

IRX4_MOUSE
NC score	0.285998 (rank : 315)	θ value	6.88961 (rank : 344)
Query Neighborhood Hits	349	Target Neighborhood Hits	286	Shared Neighborhood Hits	246
SwissProt Accessions	Q9QY61	Gene names	Irx4, Irxa3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

IRX4_HUMAN
NC score	0.282718 (rank : 316)	θ value	6.88961 (rank : 343)
Query Neighborhood Hits	349	Target Neighborhood Hits	276	Shared Neighborhood Hits	247
SwissProt Accessions	P78413, Q9UHR2	Gene names	IRX4, IRXA3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

IRX3_MOUSE
NC score	0.259921 (rank : 317)	θ value	3.0926 (rank : 327)
Query Neighborhood Hits	349	Target Neighborhood Hits	303	Shared Neighborhood Hits	211
SwissProt Accessions	P81067	Gene names	Irx3, Irxb1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

IRX3_HUMAN
NC score	0.258436 (rank : 318)	θ value	3.0926 (rank : 326)
Query Neighborhood Hits	349	Target Neighborhood Hits	342	Shared Neighborhood Hits	211
SwissProt Accessions	P78415, Q7Z4A4, Q7Z4A5, Q8IVC6	Gene names	IRX3, IRXB1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

IRX2_HUMAN
NC score	0.256048 (rank : 319)	θ value	θ > 10 (rank : 358)
Query Neighborhood Hits	349	Target Neighborhood Hits	358	Shared Neighborhood Hits	219
SwissProt Accessions	Q9BZI1, Q7Z2I7	Gene names	IRX2, IRXA2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

SIX5_MOUSE
NC score	0.242101 (rank : 320)	θ value	5.27518 (rank : 340)
Query Neighborhood Hits	349	Target Neighborhood Hits	354	Shared Neighborhood Hits	209
SwissProt Accessions	P70178	Gene names	Six5, Dmahp
Domain Architecture
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein homolog).

IRX1_HUMAN
NC score	0.241120 (rank : 321)	θ value	θ > 10 (rank : 356)
Query Neighborhood Hits	349	Target Neighborhood Hits	285	Shared Neighborhood Hits	217
SwissProt Accessions	P78414, Q7Z2F8, Q8N312	Gene names	IRX1, IRXA1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

IRX1_MOUSE
NC score	0.236510 (rank : 322)	θ value	θ > 10 (rank : 357)
Query Neighborhood Hits	349	Target Neighborhood Hits	269	Shared Neighborhood Hits	214
SwissProt Accessions	P81068, O55120, Q9JLL6	Gene names	Irx1, Irxa1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

IRX5_HUMAN
NC score	0.232806 (rank : 323)	θ value	θ > 10 (rank : 360)
Query Neighborhood Hits	349	Target Neighborhood Hits	362	Shared Neighborhood Hits	206
SwissProt Accessions	P78411, P78416, Q7Z2E1	Gene names	IRX5, IRX2A, IRXB2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2) (IRX-2A).

IRX2_MOUSE
NC score	0.230634 (rank : 324)	θ value	θ > 10 (rank : 359)
Query Neighborhood Hits	349	Target Neighborhood Hits	264	Shared Neighborhood Hits	207
SwissProt Accessions	P81066, O55121, Q9ERN1	Gene names	Irx2, Irxa2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

RHOX5_MOUSE
NC score	0.224546 (rank : 325)	θ value	θ > 10 (rank : 383)
Query Neighborhood Hits	349	Target Neighborhood Hits	69	Shared Neighborhood Hits	54
SwissProt Accessions	P52651	Gene names	Rhox5, Pem
Domain Architecture	No domain graphic available
Description	Homeobox protein Rhox5 (Reproductive homeobox on chromosome X 5) (Homeobox protein Pem) (Placenta and embryonic expression protein).

IRX5_MOUSE
NC score	0.223932 (rank : 326)	θ value	θ > 10 (rank : 361)
Query Neighborhood Hits	349	Target Neighborhood Hits	324	Shared Neighborhood Hits	204
SwissProt Accessions	Q9JKQ4, Q80WV4, Q9JLL5	Gene names	Irx5, Irxb2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2).

ZHX2_HUMAN
NC score	0.212694 (rank : 327)	θ value	0.0431538 (rank : 286)
Query Neighborhood Hits	349	Target Neighborhood Hits	347	Shared Neighborhood Hits	176
SwissProt Accessions	Q9Y6X8	Gene names	ZHX2, AFR1, KIAA0854, RAF
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

PO5FM_HUMAN
NC score	0.212107 (rank : 328)	θ value	0.0563607 (rank : 288)
Query Neighborhood Hits	349	Target Neighborhood Hits	212	Shared Neighborhood Hits	189
SwissProt Accessions	Q9BZV7	Gene names	POU5F1P1, POU5FLC20
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 2.

ZHX3_MOUSE
NC score	0.211010 (rank : 329)	θ value	θ > 10 (rank : 391)
Query Neighborhood Hits	349	Target Neighborhood Hits	321	Shared Neighborhood Hits	214
SwissProt Accessions	Q8C0Q2, Q80U14	Gene names	Zhx3, Kiaa0395, Tix1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

PO5FL_HUMAN
NC score	0.210735 (rank : 330)	θ value	0.0563607 (rank : 287)
Query Neighborhood Hits	349	Target Neighborhood Hits	214	Shared Neighborhood Hits	186
SwissProt Accessions	Q06416, Q9BZV9	Gene names	POU5F1P1, OTF3C, POU5FLC8
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 1 (Octamer- binding protein 3-like).

ZHX3_HUMAN
NC score	0.210347 (rank : 331)	θ value	θ > 10 (rank : 390)
Query Neighborhood Hits	349	Target Neighborhood Hits	331	Shared Neighborhood Hits	212
SwissProt Accessions	Q9H4I2, O43145	Gene names	ZHX3, KIAA0395, TIX1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

ZHX2_MOUSE
NC score	0.209473 (rank : 332)	θ value	0.00134147 (rank : 250)
Query Neighborhood Hits	349	Target Neighborhood Hits	435	Shared Neighborhood Hits	173
SwissProt Accessions	Q8C0C0	Gene names	Zhx2, Afr1, Raf
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

ZHX1_MOUSE
NC score	0.202797 (rank : 333)	θ value	θ > 10 (rank : 389)
Query Neighborhood Hits	349	Target Neighborhood Hits	334	Shared Neighborhood Hits	204
SwissProt Accessions	P70121, Q8BQ68, Q8C6T4, Q8CJG3	Gene names	Zhx1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

ZHX1_HUMAN
NC score	0.202214 (rank : 334)	θ value	5.27518 (rank : 341)
Query Neighborhood Hits	349	Target Neighborhood Hits	307	Shared Neighborhood Hits	199
SwissProt Accessions	Q9UKY1, Q8IWD8	Gene names	ZHX1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

HMBX1_HUMAN
NC score	0.200378 (rank : 335)	θ value	1.81305 (rank : 320)
Query Neighborhood Hits	349	Target Neighborhood Hits	118	Shared Neighborhood Hits	102
SwissProt Accessions	Q6NT76, Q3Y6P1, Q96GS5, Q9H701	Gene names	HMBOX1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

HMBX1_MOUSE
NC score	0.200103 (rank : 336)	θ value	3.0926 (rank : 325)
Query Neighborhood Hits	349	Target Neighborhood Hits	117	Shared Neighborhood Hits	102
SwissProt Accessions	Q8BJA3, Q80WC2, Q8BWE7, Q99LV1	Gene names	Hmbox1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

CUTL2_MOUSE
NC score	0.174095 (rank : 337)	θ value	1.06291 (rank : 309)
Query Neighborhood Hits	349	Target Neighborhood Hits	771	Shared Neighborhood Hits	179
SwissProt Accessions	P70298	Gene names	Cutl2
Domain Architecture
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

CUTL2_HUMAN
NC score	0.172357 (rank : 338)	θ value	0.0961366 (rank : 294)
Query Neighborhood Hits	349	Target Neighborhood Hits	906	Shared Neighborhood Hits	178
SwissProt Accessions	O14529	Gene names	CUTL2, KIAA0293
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

CUTL1_MOUSE
NC score	0.171041 (rank : 339)	θ value	0.00134147 (rank : 246)
Query Neighborhood Hits	349	Target Neighborhood Hits	1620	Shared Neighborhood Hits	222
SwissProt Accessions	P53564, O08994, P70301, Q571L6, Q91ZD2	Gene names	Cutl1, Cux, Cux1, Kiaa4047
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP) (Homeobox protein Cux).

CUTL1_HUMAN
NC score	0.160026 (rank : 340)	θ value	0.000786445 (rank : 243)
Query Neighborhood Hits	349	Target Neighborhood Hits	1574	Shared Neighborhood Hits	213
SwissProt Accessions	P39880, Q6NYH4, Q9UEV5	Gene names	CUTL1
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP).

PO5FN_HUMAN
NC score	0.148932 (rank : 341)	θ value	0.813845 (rank : 307)
Query Neighborhood Hits	349	Target Neighborhood Hits	134	Shared Neighborhood Hits	120
SwissProt Accessions	Q9BZW0	Gene names	POU5FLC1
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 3.

MEIS3_HUMAN
NC score	0.135920 (rank : 342)	θ value	0.00390308 (rank : 257)
Query Neighborhood Hits	349	Target Neighborhood Hits	118	Shared Neighborhood Hits	100
SwissProt Accessions	Q99687, Q6NT73, Q8TC66, Q9NPW2	Gene names	MEIS3, MRG2
Domain Architecture	No domain graphic available
Description	Homeobox protein Meis3 (Meis1-related protein 2).

MEIS2_MOUSE
NC score	0.132435 (rank : 343)	θ value	0.21417 (rank : 300)
Query Neighborhood Hits	349	Target Neighborhood Hits	208	Shared Neighborhood Hits	106
SwissProt Accessions	P97367, O35676, O35677, P97403, P97404	Gene names	Meis2, Mrg1, Stra10
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

MEIS3_MOUSE
NC score	0.132272 (rank : 344)	θ value	0.0252991 (rank : 274)
Query Neighborhood Hits	349	Target Neighborhood Hits	118	Shared Neighborhood Hits	97
SwissProt Accessions	P97368, Q99L81	Gene names	Meis3, Mrg2
Domain Architecture
Description	Homeobox protein Meis3 (Meis1-related protein 2).

MEIS2_HUMAN
NC score	0.132251 (rank : 345)	θ value	0.21417 (rank : 299)
Query Neighborhood Hits	349	Target Neighborhood Hits	182	Shared Neighborhood Hits	105
SwissProt Accessions	O14770, Q96KI4, Q96KI5, Q9NRS1, Q9NRS2, Q9NRS3	Gene names	MEIS2, MRG1
Domain Architecture
Description	Homeobox protein Meis2 (Meis1-related protein 1).

MEIS1_HUMAN
NC score	0.131146 (rank : 346)	θ value	0.0330416 (rank : 277)
Query Neighborhood Hits	349	Target Neighborhood Hits	115	Shared Neighborhood Hits	99
SwissProt Accessions	O00470	Gene names	MEIS1
Domain Architecture
Description	Homeobox protein Meis1.

MEIS1_MOUSE
NC score	0.131139 (rank : 347)	θ value	0.0330416 (rank : 278)
Query Neighborhood Hits	349	Target Neighborhood Hits	115	Shared Neighborhood Hits	99
SwissProt Accessions	Q60954, Q5SVC8, Q60955, Q8CIL0	Gene names	Meis1
Domain Architecture
Description	Homeobox protein Meis1 (Myeloid ecotropic viral integration site 1).

PAX2_MOUSE
NC score	0.119373 (rank : 348)	θ value	θ > 10 (rank : 370)
Query Neighborhood Hits	349	Target Neighborhood Hits	86	Shared Neighborhood Hits	53
SwissProt Accessions	P32114	Gene names	Pax2, Pax-2
Domain Architecture
Description	Paired box protein Pax-2.

PAX2_HUMAN
NC score	0.118826 (rank : 349)	θ value	θ > 10 (rank : 369)
Query Neighborhood Hits	349	Target Neighborhood Hits	84	Shared Neighborhood Hits	53
SwissProt Accessions	Q02962, Q15105, Q15110, Q15837	Gene names	PAX2
Domain Architecture
Description	Paired box protein Pax-2.

ONEC2_HUMAN
NC score	0.108536 (rank : 350)	θ value	1.38821 (rank : 317)
Query Neighborhood Hits	349	Target Neighborhood Hits	115	Shared Neighborhood Hits	89
SwissProt Accessions	O95948	Gene names	ONECUT2
Domain Architecture
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

HNF6_MOUSE
NC score	0.107864 (rank : 351)	θ value	θ > 10 (rank : 352)
Query Neighborhood Hits	349	Target Neighborhood Hits	124	Shared Neighborhood Hits	98
SwissProt Accessions	O08755	Gene names	Onecut1, Hnf6, Hnf6a
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

SPRM1_HUMAN
NC score	0.107150 (rank : 352)	θ value	θ > 10 (rank : 384)
Query Neighborhood Hits	349	Target Neighborhood Hits	72	Shared Neighborhood Hits	66
SwissProt Accessions	Q8N7G0, Q8N748	Gene names	SPRM1
Domain Architecture
Description	Sperm 1 POU-domain transcription factor (SPRM-1).

SPRM1_MOUSE
NC score	0.106963 (rank : 353)	θ value	θ > 10 (rank : 385)
Query Neighborhood Hits	349	Target Neighborhood Hits	73	Shared Neighborhood Hits	63
SwissProt Accessions	Q9DAC9	Gene names	Sprm1
Domain Architecture
Description	Sperm 1 POU-domain transcription factor (SPRM-1).

PAX5_HUMAN
NC score	0.106709 (rank : 354)	θ value	θ > 10 (rank : 371)
Query Neighborhood Hits	349	Target Neighborhood Hits	106	Shared Neighborhood Hits	46
SwissProt Accessions	Q02548, O75933	Gene names	PAX5
Domain Architecture
Description	Paired box protein Pax-5 (B-cell-specific transcription factor) (BSAP).

PAX5_MOUSE
NC score	0.106316 (rank : 355)	θ value	θ > 10 (rank : 372)
Query Neighborhood Hits	349	Target Neighborhood Hits	106	Shared Neighborhood Hits	46
SwissProt Accessions	Q02650	Gene names	Pax5, Pax-5
Domain Architecture
Description	Paired box protein Pax-5 (B-cell-specific transcription factor) (BSAP).

ONEC2_MOUSE
NC score	0.104959 (rank : 356)	θ value	1.81305 (rank : 321)
Query Neighborhood Hits	349	Target Neighborhood Hits	123	Shared Neighborhood Hits	89
SwissProt Accessions	Q6XBJ3	Gene names	Onecut2, Oc2
Domain Architecture	No domain graphic available
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

HNF6_HUMAN
NC score	0.104050 (rank : 357)	θ value	θ > 10 (rank : 351)
Query Neighborhood Hits	349	Target Neighborhood Hits	127	Shared Neighborhood Hits	96
SwissProt Accessions	Q9UBC0, Q99744, Q9UMR6	Gene names	ONECUT1, HNF6, HNF6A
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

TF2LX_HUMAN
NC score	0.103377 (rank : 358)	θ value	4.03905 (rank : 334)
Query Neighborhood Hits	349	Target Neighborhood Hits	108	Shared Neighborhood Hits	76
SwissProt Accessions	Q8IUE1	Gene names	TGIF2LX, TGIFLX
Domain Architecture
Description	Homeobox protein TGIF2LX (TGFB-induced factor 2-like protein, X- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the X).

PAX8_MOUSE
NC score	0.098670 (rank : 359)	θ value	θ > 10 (rank : 374)
Query Neighborhood Hits	349	Target Neighborhood Hits	62	Shared Neighborhood Hits	28
SwissProt Accessions	Q00288, P97342	Gene names	Pax8, Pax-8
Domain Architecture
Description	Paired box protein Pax-8.

PKNX2_MOUSE
NC score	0.095638 (rank : 360)	θ value	6.88961 (rank : 346)
Query Neighborhood Hits	349	Target Neighborhood Hits	197	Shared Neighborhood Hits	88
SwissProt Accessions	Q8BG99, Q8R4B0	Gene names	Pknox2, Prep2
Domain Architecture	No domain graphic available
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

PKNX2_HUMAN
NC score	0.094210 (rank : 361)	θ value	6.88961 (rank : 345)
Query Neighborhood Hits	349	Target Neighborhood Hits	133	Shared Neighborhood Hits	86
SwissProt Accessions	Q96KN3, Q63HL6, Q86XD1	Gene names	PKNOX2, PREP2
Domain Architecture
Description	Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein PREP-2).

TGIF_HUMAN
NC score	0.093970 (rank : 362)	θ value	0.62314 (rank : 306)
Query Neighborhood Hits	349	Target Neighborhood Hits	109	Shared Neighborhood Hits	64
SwissProt Accessions	Q15583, Q6ICR0, Q8N5X9, Q9NRS0	Gene names	TGIF
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

PKNX1_MOUSE
NC score	0.092514 (rank : 363)	θ value	θ > 10 (rank : 378)
Query Neighborhood Hits	349	Target Neighborhood Hits	103	Shared Neighborhood Hits	80
SwissProt Accessions	O70477	Gene names	Pknox1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1).

TF2LY_HUMAN
NC score	0.092426 (rank : 364)	θ value	θ > 10 (rank : 386)
Query Neighborhood Hits	349	Target Neighborhood Hits	90	Shared Neighborhood Hits	70
SwissProt Accessions	Q8IUE0	Gene names	TGIF2LY, TGIFLY
Domain Architecture
Description	Homeobox protein TGIF2LY (TGFB-induced factor 2-like protein, Y- linked) (TGF(beta)induced transcription factor 2-like protein) (TGIF- like on the Y).

PKNX1_HUMAN
NC score	0.092248 (rank : 365)	θ value	θ > 10 (rank : 377)
Query Neighborhood Hits	349	Target Neighborhood Hits	101	Shared Neighborhood Hits	79
SwissProt Accessions	P55347, O00528, Q8IWT7	Gene names	PKNOX1, PREP1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1) (Homeobox protein PREP-1).

TGIF2_MOUSE
NC score	0.091682 (rank : 366)	θ value	θ > 10 (rank : 388)
Query Neighborhood Hits	349	Target Neighborhood Hits	127	Shared Neighborhood Hits	70
SwissProt Accessions	Q8C0Y1	Gene names	Tgif2
Domain Architecture	No domain graphic available
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

LMO4_HUMAN
NC score	0.091421 (rank : 367)	θ value	θ > 10 (rank : 365)
Query Neighborhood Hits	349	Target Neighborhood Hits	111	Shared Neighborhood Hits	25
SwissProt Accessions	P61968, O00158, O88894	Gene names	LMO4
Domain Architecture
Description	LIM domain transcription factor LMO4 (LIM domain only protein 4) (LMO- 4) (Breast tumor autoantigen).

LMO4_MOUSE
NC score	0.091421 (rank : 368)	θ value	θ > 10 (rank : 366)
Query Neighborhood Hits	349	Target Neighborhood Hits	111	Shared Neighborhood Hits	25
SwissProt Accessions	P61969, O00158, O88894	Gene names	Lmo4
Domain Architecture
Description	LIM domain transcription factor LMO4 (LIM domain only protein 4) (LMO- 4) (Breast tumor autoantigen).

TGIF_MOUSE
NC score	0.091270 (rank : 369)	θ value	1.06291 (rank : 315)
Query Neighborhood Hits	349	Target Neighborhood Hits	125	Shared Neighborhood Hits	66
SwissProt Accessions	P70284, Q921F9, Q99JS3	Gene names	Tgif
Domain Architecture
Description	5'-TG-3'-interacting factor (Homeobox protein TGIF).

RBTN1_MOUSE
NC score	0.089032 (rank : 370)	θ value	θ > 10 (rank : 380)
Query Neighborhood Hits	349	Target Neighborhood Hits	109	Shared Neighborhood Hits	25
SwissProt Accessions	Q924W9	Gene names	Lmo1, Rbtn1, Rhom1, Ttg1
Domain Architecture	No domain graphic available
Description	Rhombotin-1 (Cysteine-rich protein TTG-1) (LIM-only protein 1).

RBTN1_HUMAN
NC score	0.089022 (rank : 371)	θ value	θ > 10 (rank : 379)
Query Neighborhood Hits	349	Target Neighborhood Hits	110	Shared Neighborhood Hits	25
SwissProt Accessions	P25800, Q4VBC5	Gene names	LMO1, RBTN1, RHOM1, TTG1
Domain Architecture
Description	Rhombotin-1 (Cysteine-rich protein TTG-1) (T-cell translocation protein 1) (LIM-only protein 1).

LMO3_HUMAN
NC score	0.088980 (rank : 372)	θ value	θ > 10 (rank : 363)
Query Neighborhood Hits	349	Target Neighborhood Hits	111	Shared Neighborhood Hits	25
SwissProt Accessions	Q8TAP4, Q8N974, Q9UDD5	Gene names	LMO3, RBTN3, RHOM3
Domain Architecture
Description	LIM-only protein 3 (Neuronal-specific transcription factor DAT1) (Rhombotin-3).

LMO3_MOUSE
NC score	0.088980 (rank : 373)	θ value	θ > 10 (rank : 364)
Query Neighborhood Hits	349	Target Neighborhood Hits	111	Shared Neighborhood Hits	25
SwissProt Accessions	Q8BZL8	Gene names	Lmo3
Domain Architecture
Description	LIM-only protein 3 (Neuronal-specific transcription factor DAT1).

PAX8_HUMAN
NC score	0.088073 (rank : 374)	θ value	θ > 10 (rank : 373)
Query Neighborhood Hits	349	Target Neighborhood Hits	56	Shared Neighborhood Hits	21
SwissProt Accessions	Q06710, Q09155, Q16337, Q16338, Q16339, Q96J49	Gene names	PAX8
Domain Architecture
Description	Paired box protein Pax-8.

RBTN2_MOUSE
NC score	0.084845 (rank : 375)	θ value	θ > 10 (rank : 382)
Query Neighborhood Hits	349	Target Neighborhood Hits	114	Shared Neighborhood Hits	25
SwissProt Accessions	P25801	Gene names	Lmo2, Rbtn-2, Rbtn2, Rhom-2
Domain Architecture
Description	Rhombotin-2 (Cysteine-rich protein TTG-2) (T-cell translocation protein 2) (LIM-only protein 2).

RBTN2_HUMAN
NC score	0.084842 (rank : 376)	θ value	θ > 10 (rank : 381)
Query Neighborhood Hits	349	Target Neighborhood Hits	114	Shared Neighborhood Hits	25
SwissProt Accessions	P25791, Q9HD58	Gene names	LMO2, RBTN2, RHOM2, TTG2
Domain Architecture
Description	Rhombotin-2 (Cysteine-rich protein TTG-2) (T-cell translocation protein 2) (LIM-only protein 2).

PAX9_MOUSE
NC score	0.082390 (rank : 377)	θ value	θ > 10 (rank : 376)
Query Neighborhood Hits	349	Target Neighborhood Hits	67	Shared Neighborhood Hits	11
SwissProt Accessions	P47242	Gene names	Pax9, Pax-9
Domain Architecture
Description	Paired box protein Pax-9.

PAX9_HUMAN
NC score	0.081360 (rank : 378)	θ value	θ > 10 (rank : 375)
Query Neighborhood Hits	349	Target Neighborhood Hits	92	Shared Neighborhood Hits	14
SwissProt Accessions	P55771, Q99582, Q9UQR4	Gene names	PAX9
Domain Architecture
Description	Paired box protein Pax-9.

TGIF2_HUMAN
NC score	0.081182 (rank : 379)	θ value	θ > 10 (rank : 387)
Query Neighborhood Hits	349	Target Neighborhood Hits	94	Shared Neighborhood Hits	62
SwissProt Accessions	Q9GZN2	Gene names	TGIF2
Domain Architecture
Description	Homeobox protein TGIF2 (TGFB-induced factor 2) (5'-TG-3'-interacting factor 2) (TGF(beta)-induced transcription factor 2).

PAX1_HUMAN
NC score	0.076585 (rank : 380)	θ value	θ > 10 (rank : 367)
Query Neighborhood Hits	349	Target Neighborhood Hits	72	Shared Neighborhood Hits	12
SwissProt Accessions	P15863, Q642X9, Q6NTC0, Q9Y558	Gene names	PAX1, HUP48
Domain Architecture
Description	Paired box protein Pax-1 (HUP48).

PAX1_MOUSE
NC score	0.076162 (rank : 381)	θ value	θ > 10 (rank : 368)
Query Neighborhood Hits	349	Target Neighborhood Hits	69	Shared Neighborhood Hits	10
SwissProt Accessions	P09084, Q9R2B1	Gene names	Pax1, Pax-1
Domain Architecture
Description	Paired box protein Pax-1.

HOMEZ_HUMAN
NC score	0.056724 (rank : 382)	θ value	θ > 10 (rank : 353)
Query Neighborhood Hits	349	Target Neighborhood Hits	110	Shared Neighborhood Hits	44
SwissProt Accessions	Q8IX15, Q6P049, Q86XB6, Q9P2A5	Gene names	HOMEZ, KIAA1443
Domain Architecture
Description	Homeobox and leucine zipper protein Homez (Homeodomain leucine zipper- containing factor).

TRIP6_HUMAN
NC score	0.054389 (rank : 383)	θ value	0.813845 (rank : 308)
Query Neighborhood Hits	349	Target Neighborhood Hits	228	Shared Neighborhood Hits	30
SwissProt Accessions	Q15654, O15170, O15275, Q9BTB2, Q9UNT4	Gene names	TRIP6, OIP1
Domain Architecture
Description	Thyroid receptor-interacting protein 6 (TRIP6) (OPA-interacting protein 1) (Zyxin-related protein 1) (ZRP-1).

ADNP_MOUSE
NC score	0.033646 (rank : 384)	θ value	4.03905 (rank : 331)
Query Neighborhood Hits	349	Target Neighborhood Hits	232	Shared Neighborhood Hits	45
SwissProt Accessions	Q9Z103	Gene names	Adnp
Domain Architecture
Description	Activity-dependent neuroprotector (Activity-dependent neuroprotective protein).

ADNP_HUMAN
NC score	0.026574 (rank : 385)	θ value	4.03905 (rank : 330)
Query Neighborhood Hits	349	Target Neighborhood Hits	265	Shared Neighborhood Hits	39
SwissProt Accessions	Q9H2P0, O94881, Q9UG34	Gene names	ADNP, KIAA0784
Domain Architecture
Description	Activity-dependent neuroprotector (Activity-dependent neuroprotective protein).

TJAP1_HUMAN
NC score	0.010611 (rank : 386)	θ value	4.03905 (rank : 335)
Query Neighborhood Hits	349	Target Neighborhood Hits	214	Shared Neighborhood Hits	8
SwissProt Accessions	Q5JTD0, Q5JTD1, Q5JWW1, Q68DB2, Q6P2P3, Q9H7V7	Gene names	TJAP1, PILT, TJP4
Domain Architecture	No domain graphic available
Description	Tight junction-associated protein 1 (Tight junction protein 4) (Protein incorporated later into tight junctions).

HYAL1_HUMAN
NC score	0.009531 (rank : 387)	θ value	0.62314 (rank : 303)
Query Neighborhood Hits	349	Target Neighborhood Hits	19	Shared Neighborhood Hits	2
SwissProt Accessions	Q12794, Q6FH23, Q6PIZ6, Q7KYU2, Q7LE34, Q8NFK5, Q8NFK6, Q8NFK7, Q8NFK8, Q8NFK9, Q93013, Q9UKD5, Q9UNI8	Gene names	HYAL1, LUCA1
Domain Architecture	No domain graphic available
Description	Hyaluronidase-1 precursor (EC 3.2.1.35) (Hyal-1) (Hyaluronoglucosaminidase-1) (LUCA-1).

TSH3_HUMAN
NC score	0.008078 (rank : 388)	θ value	4.03905 (rank : 336)
Query Neighborhood Hits	349	Target Neighborhood Hits	564	Shared Neighborhood Hits	17
SwissProt Accessions	Q63HK5, Q9H0G6, Q9P254	Gene names	TSHZ3, KIAA1474, TSH3, ZNF537
Domain Architecture	No domain graphic available
Description	Teashirt homolog 3 (Zinc finger protein 537).

TSH3_MOUSE
NC score	0.007712 (rank : 389)	θ value	4.03905 (rank : 337)
Query Neighborhood Hits	349	Target Neighborhood Hits	590	Shared Neighborhood Hits	16
SwissProt Accessions	Q8CGV9, Q5DTX4	Gene names	Tshz3, Kiaa1474, Tsh3, Zfp537, Znf537
Domain Architecture	No domain graphic available
Description	Teashirt homolog 3 (Zinc finger protein 537).

CPNE2_MOUSE
NC score	0.000419 (rank : 390)	θ value	6.88961 (rank : 342)
Query Neighborhood Hits	349	Target Neighborhood Hits	82	Shared Neighborhood Hits	3
SwissProt Accessions	P59108, Q8K1D7	Gene names	Cpne2
Domain Architecture
Description	Copine-2 (Copine II).

NUMA1_HUMAN
NC score	-0.012074 (rank : 391)	θ value	5.27518 (rank : 338)
Query Neighborhood Hits	349	Target Neighborhood Hits	1523	Shared Neighborhood Hits	7
SwissProt Accessions	Q14980, Q14981	Gene names	NUMA1, NUMA
Domain Architecture	No domain graphic available
Description	Nuclear mitotic apparatus protein 1 (NuMA protein) (SP-H antigen).