Please be patient as the page loads

Stop Image Loading/Displaying

Network neighborhood for query Sequence : PO2F1_HUMAN

For an explanation of this page, click here

PO2F1_HUMAN
SwissProt Accessions	P14859, Q5TBT7, Q6PK46, Q8NEU9, Q9BPV1	Gene names	POU2F1, OCT1, OTF1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).
Rank Plots	Jump to hits sorted by θ Jump to hits sorted by NC score

Hits sorted by θ

PO2F1_HUMAN
θ value	2.67656e-153 (rank : 1)	NC score	0.999962 (rank : 1)
Query Neighborhood Hits	426	Target Neighborhood Hits	426	Shared Neighborhood Hits	426
SwissProt Accessions	P14859, Q5TBT7, Q6PK46, Q8NEU9, Q9BPV1	Gene names	POU2F1, OCT1, OTF1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

PO2F1_MOUSE
θ value	1.42583e-138 (rank : 2)	NC score	0.984730 (rank : 2)
Query Neighborhood Hits	426	Target Neighborhood Hits	408	Shared Neighborhood Hits	359
SwissProt Accessions	P25425, Q61994, Q63891, Q6Y681, Q7TSD0, Q8BT04, Q8K570, Q99JH0, Q9WTZ4, Q9WTZ5, Q9WTZ6	Gene names	Pou2f1, Oct-1, Otf-1, Otf1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

PO2F2_HUMAN
θ value	8.22888e-78 (rank : 3)	NC score	0.966097 (rank : 4)
Query Neighborhood Hits	426	Target Neighborhood Hits	379	Shared Neighborhood Hits	306
SwissProt Accessions	P09086, Q16648, Q9BRS4	Gene names	POU2F2, OCT2, OTF2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

PO2F2_MOUSE
θ value	1.5519e-76 (rank : 4)	NC score	0.968293 (rank : 3)
Query Neighborhood Hits	426	Target Neighborhood Hits	353	Shared Neighborhood Hits	305
SwissProt Accessions	Q00196, Q00197, Q00198, Q00199, Q00200, Q00201, Q05882, Q61995, Q61996, Q64245	Gene names	Pou2f2, Oct2, Otf2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

PO2F3_MOUSE
θ value	7.98882e-65 (rank : 5)	NC score	0.963584 (rank : 6)
Query Neighborhood Hits	426	Target Neighborhood Hits	328	Shared Neighborhood Hits	302
SwissProt Accessions	P31362	Gene names	Pou2f3, Epoc1, Oct11, Otf-11, Otf11
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Epoc-1).

PO2F3_HUMAN
θ value	3.96481e-64 (rank : 6)	NC score	0.964134 (rank : 5)
Query Neighborhood Hits	426	Target Neighborhood Hits	319	Shared Neighborhood Hits	300
SwissProt Accessions	Q9UKI9, Q9UKR7, Q9Y504	Gene names	POU2F3, OTF11, PLA1
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Transcription factor Skn-1) (PLA-1 protein).

PO3F2_HUMAN
θ value	3.1488e-53 (rank : 7)	NC score	0.940524 (rank : 12)
Query Neighborhood Hits	426	Target Neighborhood Hits	308	Shared Neighborhood Hits	274
SwissProt Accessions	P20265, Q14960, Q86V54, Q9UJL0	Gene names	POU3F2, BRN2, OCT7, OTF7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

PO3F2_MOUSE
θ value	3.1488e-53 (rank : 8)	NC score	0.940561 (rank : 11)
Query Neighborhood Hits	426	Target Neighborhood Hits	313	Shared Neighborhood Hits	275
SwissProt Accessions	P31360	Gene names	Pou3f2, Brn-2, Brn2, Otf7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

PO3F3_HUMAN
θ value	4.11246e-53 (rank : 9)	NC score	0.941576 (rank : 7)
Query Neighborhood Hits	426	Target Neighborhood Hits	311	Shared Neighborhood Hits	271
SwissProt Accessions	P20264, P78379	Gene names	POU3F3, BRN1, OTF8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

PO3F3_MOUSE
θ value	4.11246e-53 (rank : 10)	NC score	0.941495 (rank : 8)
Query Neighborhood Hits	426	Target Neighborhood Hits	308	Shared Neighborhood Hits	270
SwissProt Accessions	P31361	Gene names	Pou3f3, Brn-1, Brn1, Otf8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

PO3F4_MOUSE
θ value	2.041e-52 (rank : 11)	NC score	0.933070 (rank : 15)
Query Neighborhood Hits	426	Target Neighborhood Hits	281	Shared Neighborhood Hits	246
SwissProt Accessions	P62515, P25216	Gene names	Pou3f4, Brn-4, Brn4, Otf9
Domain Architecture	No domain graphic available
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

PO3F4_HUMAN
θ value	5.93839e-52 (rank : 12)	NC score	0.931407 (rank : 16)
Query Neighborhood Hits	426	Target Neighborhood Hits	297	Shared Neighborhood Hits	248
SwissProt Accessions	P49335, Q5H9G9, Q99410	Gene names	POU3F4, BRN4, OTF9
Domain Architecture
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

PO3F1_HUMAN
θ value	1.01294e-51 (rank : 13)	NC score	0.940790 (rank : 10)
Query Neighborhood Hits	426	Target Neighborhood Hits	256	Shared Neighborhood Hits	241
SwissProt Accessions	Q03052	Gene names	POU3F1, OCT6, OTF6
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

PO3F1_MOUSE
θ value	1.01294e-51 (rank : 14)	NC score	0.941166 (rank : 9)
Query Neighborhood Hits	426	Target Neighborhood Hits	261	Shared Neighborhood Hits	242
SwissProt Accessions	P21952	Gene names	Pou3f1, Oct6, Otf-6, Otf6, Scip
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

PO5F1_MOUSE
θ value	1.46607e-42 (rank : 15)	NC score	0.913109 (rank : 17)
Query Neighborhood Hits	426	Target Neighborhood Hits	305	Shared Neighborhood Hits	257
SwissProt Accessions	P20263, Q63843	Gene names	Pou5f1, Oct-3, Oct-4, Otf-3, Otf3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4) (NF-A3).

PO5F1_HUMAN
θ value	1.91475e-42 (rank : 16)	NC score	0.904424 (rank : 19)
Query Neighborhood Hits	426	Target Neighborhood Hits	321	Shared Neighborhood Hits	260
SwissProt Accessions	Q01860, P31359, Q15167, Q15168, Q16422	Gene names	POU5F1, OCT3, OCT4, OTF3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4).

PIT1_MOUSE
θ value	4.71619e-41 (rank : 17)	NC score	0.938280 (rank : 13)
Query Neighborhood Hits	426	Target Neighborhood Hits	313	Shared Neighborhood Hits	289
SwissProt Accessions	Q00286	Gene names	Pou1f1, Pit-1, Pit1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

PIT1_HUMAN
θ value	2.34062e-40 (rank : 18)	NC score	0.933397 (rank : 14)
Query Neighborhood Hits	426	Target Neighborhood Hits	292	Shared Neighborhood Hits	278
SwissProt Accessions	P28069, O75757, Q15132, Q15133, Q9UEL3	Gene names	POU1F1, GHF1, PIT1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

PO5FM_HUMAN
θ value	3.99248e-40 (rank : 19)	NC score	0.888741 (rank : 26)
Query Neighborhood Hits	426	Target Neighborhood Hits	212	Shared Neighborhood Hits	181
SwissProt Accessions	Q9BZV7	Gene names	POU5F1P1, POU5FLC20
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 2.

PO5FN_HUMAN
θ value	6.81017e-40 (rank : 20)	NC score	0.877903 (rank : 28)
Query Neighborhood Hits	426	Target Neighborhood Hits	134	Shared Neighborhood Hits	111
SwissProt Accessions	Q9BZW0	Gene names	POU5FLC1
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 3.

PO5FL_HUMAN
θ value	4.41421e-39 (rank : 21)	NC score	0.887067 (rank : 27)
Query Neighborhood Hits	426	Target Neighborhood Hits	214	Shared Neighborhood Hits	178
SwissProt Accessions	Q06416, Q9BZV9	Gene names	POU5F1P1, OTF3C, POU5FLC8
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 1 (Octamer- binding protein 3-like).

PO6F1_MOUSE
θ value	4.72714e-33 (rank : 22)	NC score	0.871197 (rank : 29)
Query Neighborhood Hits	426	Target Neighborhood Hits	581	Shared Neighborhood Hits	312
SwissProt Accessions	Q07916, Q91XK3	Gene names	Pou6f1, Emb
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (Octamer-binding transcription factor EMB) (Transcription regulatory protein MCP-1).

PO4F3_HUMAN
θ value	1.98606e-31 (rank : 23)	NC score	0.898786 (rank : 23)
Query Neighborhood Hits	426	Target Neighborhood Hits	307	Shared Neighborhood Hits	284
SwissProt Accessions	Q15319, O60557	Gene names	POU4F3, BRN3C
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

PO4F3_MOUSE
θ value	1.98606e-31 (rank : 24)	NC score	0.898688 (rank : 24)
Query Neighborhood Hits	426	Target Neighborhood Hits	311	Shared Neighborhood Hits	284
SwissProt Accessions	Q63955	Gene names	Pou4f3, Brn-3c, Brn3c
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

PO4F2_MOUSE
θ value	2.59387e-31 (rank : 25)	NC score	0.902969 (rank : 20)
Query Neighborhood Hits	426	Target Neighborhood Hits	312	Shared Neighborhood Hits	287
SwissProt Accessions	Q63934, Q63954	Gene names	Pou4f2, Brn3b
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B) (Brn-3.2).

PO4F1_HUMAN
θ value	3.3877e-31 (rank : 26)	NC score	0.901328 (rank : 22)
Query Neighborhood Hits	426	Target Neighborhood Hits	342	Shared Neighborhood Hits	287
SwissProt Accessions	Q01851, Q14986, Q15318	Gene names	POU4F1, BRN3A, RDC1
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Oct-T1) (Homeobox/POU domain protein RDC-1).

PO4F1_MOUSE
θ value	3.3877e-31 (rank : 27)	NC score	0.904543 (rank : 18)
Query Neighborhood Hits	426	Target Neighborhood Hits	345	Shared Neighborhood Hits	287
SwissProt Accessions	P17208	Gene names	Pou4f1, Brn-3, Brn3, Brn3a
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Brn-3.0).

PO6F1_HUMAN
θ value	5.77852e-31 (rank : 28)	NC score	0.898057 (rank : 25)
Query Neighborhood Hits	426	Target Neighborhood Hits	370	Shared Neighborhood Hits	304
SwissProt Accessions	Q14863	Gene names	POU6F1, BRN5, MPOU, TCFB1
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (mPOU homeobox protein) (Brain-specific homeobox/POU domain protein 5) (Brain-5) (Brn-5 protein).

PO4F2_HUMAN
θ value	9.8567e-31 (rank : 29)	NC score	0.901359 (rank : 21)
Query Neighborhood Hits	426	Target Neighborhood Hits	310	Shared Neighborhood Hits	287
SwissProt Accessions	Q12837, Q13883, Q14987	Gene names	POU4F2, BRN3B
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B).

SPRM1_MOUSE
θ value	2.59989e-23 (rank : 30)	NC score	0.840866 (rank : 31)
Query Neighborhood Hits	426	Target Neighborhood Hits	73	Shared Neighborhood Hits	62
SwissProt Accessions	Q9DAC9	Gene names	Sprm1
Domain Architecture
Description	Sperm 1 POU-domain transcription factor (SPRM-1).

SPRM1_HUMAN
θ value	2.87452e-22 (rank : 31)	NC score	0.850145 (rank : 30)
Query Neighborhood Hits	426	Target Neighborhood Hits	72	Shared Neighborhood Hits	66
SwissProt Accessions	Q8N7G0, Q8N748	Gene names	SPRM1
Domain Architecture
Description	Sperm 1 POU-domain transcription factor (SPRM-1).

PO6F2_MOUSE
θ value	1.09232e-21 (rank : 32)	NC score	0.815319 (rank : 33)
Query Neighborhood Hits	426	Target Neighborhood Hits	639	Shared Neighborhood Hits	325
SwissProt Accessions	Q8BJI4	Gene names	Pou6f2
Domain Architecture	No domain graphic available
Description	POU domain, class 6, transcription factor 2.

PO6F2_HUMAN
θ value	7.0802e-21 (rank : 33)	NC score	0.817707 (rank : 32)
Query Neighborhood Hits	426	Target Neighborhood Hits	618	Shared Neighborhood Hits	314
SwissProt Accessions	P78424, P78425, Q75ME8, Q86UM6, Q9UDS7	Gene names	POU6F2, RPF1
Domain Architecture
Description	POU domain, class 6, transcription factor 2 (Retina-derived POU-domain factor 1) (RPF-1).

LHX5_HUMAN
θ value	1.69304e-06 (rank : 34)	NC score	0.428288 (rank : 96)
Query Neighborhood Hits	426	Target Neighborhood Hits	453	Shared Neighborhood Hits	308
SwissProt Accessions	Q9H2C1	Gene names	LHX5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

HXA9_HUMAN
θ value	8.40245e-06 (rank : 35)	NC score	0.412095 (rank : 144)
Query Neighborhood Hits	426	Target Neighborhood Hits	332	Shared Neighborhood Hits	294
SwissProt Accessions	P31269, O43369, O43429, Q99820	Gene names	HOXA9, HOX1G
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1G).

HXA9_MOUSE
θ value	8.40245e-06 (rank : 36)	NC score	0.412413 (rank : 141)
Query Neighborhood Hits	426	Target Neighborhood Hits	334	Shared Neighborhood Hits	294
SwissProt Accessions	P09631, O70154, O70155	Gene names	Hoxa9, Hox-1.7, Hoxa-9
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1.7).

LHX1_HUMAN
θ value	5.44631e-05 (rank : 37)	NC score	0.415543 (rank : 132)
Query Neighborhood Hits	426	Target Neighborhood Hits	453	Shared Neighborhood Hits	307
SwissProt Accessions	P48742, Q3MIW0	Gene names	LHX1, LIM1
Domain Architecture
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

LHX1_MOUSE
θ value	5.44631e-05 (rank : 38)	NC score	0.412445 (rank : 140)
Query Neighborhood Hits	426	Target Neighborhood Hits	453	Shared Neighborhood Hits	307
SwissProt Accessions	P63006, P36199	Gene names	Lhx1, Lim-1, Lim1
Domain Architecture	No domain graphic available
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

LHX5_MOUSE
θ value	5.44631e-05 (rank : 39)	NC score	0.423316 (rank : 109)
Query Neighborhood Hits	426	Target Neighborhood Hits	456	Shared Neighborhood Hits	307
SwissProt Accessions	P61375, P50459	Gene names	Lhx5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

HXC12_HUMAN
θ value	7.1131e-05 (rank : 40)	NC score	0.475549 (rank : 43)
Query Neighborhood Hits	426	Target Neighborhood Hits	313	Shared Neighborhood Hits	290
SwissProt Accessions	P31275, Q9BXJ6	Gene names	HOXC12, HOX3F
Domain Architecture
Description	Homeobox protein Hox-C12 (Hox-3F).

HXC12_MOUSE
θ value	7.1131e-05 (rank : 41)	NC score	0.475218 (rank : 44)
Query Neighborhood Hits	426	Target Neighborhood Hits	316	Shared Neighborhood Hits	291
SwissProt Accessions	Q8K5B8	Gene names	Hoxc12, Hox-3.8, Hoxc-12
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C12 (Hox-3.8).

HXD3_MOUSE
θ value	0.00020696 (rank : 42)	NC score	0.410095 (rank : 156)
Query Neighborhood Hits	426	Target Neighborhood Hits	435	Shared Neighborhood Hits	305
SwissProt Accessions	P09027, Q3UUD3	Gene names	Hoxd3, Hox-4.1, Hoxd-3
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4.1) (Homeobox protein MH-19).

ATBF1_HUMAN
θ value	0.000270298 (rank : 43)	NC score	0.302157 (rank : 286)
Query Neighborhood Hits	426	Target Neighborhood Hits	1547	Shared Neighborhood Hits	355
SwissProt Accessions	Q15911, O15101, Q13719	Gene names	ATBF1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

GBX1_HUMAN
θ value	0.000270298 (rank : 44)	NC score	0.476081 (rank : 42)
Query Neighborhood Hits	426	Target Neighborhood Hits	334	Shared Neighborhood Hits	292
SwissProt Accessions	Q14549	Gene names	GBX1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

HXD3_HUMAN
θ value	0.00035302 (rank : 45)	NC score	0.405217 (rank : 180)
Query Neighborhood Hits	426	Target Neighborhood Hits	433	Shared Neighborhood Hits	300
SwissProt Accessions	P31249, Q99955, Q9BSC5	Gene names	HOXD3, HOX4A
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4A).

MSX2_HUMAN
θ value	0.00035302 (rank : 46)	NC score	0.463191 (rank : 51)
Query Neighborhood Hits	426	Target Neighborhood Hits	337	Shared Neighborhood Hits	303
SwissProt Accessions	P35548	Gene names	MSX2, HOX8
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8).

VAX1_HUMAN
θ value	0.000461057 (rank : 47)	NC score	0.493624 (rank : 37)
Query Neighborhood Hits	426	Target Neighborhood Hits	355	Shared Neighborhood Hits	303
SwissProt Accessions	Q5SQQ9, Q6ZSX0	Gene names	VAX1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

VAX1_MOUSE
θ value	0.000461057 (rank : 48)	NC score	0.493921 (rank : 36)
Query Neighborhood Hits	426	Target Neighborhood Hits	351	Shared Neighborhood Hits	304
SwissProt Accessions	Q2NKI2, O88880	Gene names	Vax1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

VAX2_HUMAN
θ value	0.000461057 (rank : 49)	NC score	0.496074 (rank : 34)
Query Neighborhood Hits	426	Target Neighborhood Hits	337	Shared Neighborhood Hits	303
SwissProt Accessions	Q9UIW0	Gene names	VAX2
Domain Architecture
Description	Ventral anterior homeobox 2.

VAX2_MOUSE
θ value	0.000461057 (rank : 50)	NC score	0.496030 (rank : 35)
Query Neighborhood Hits	426	Target Neighborhood Hits	338	Shared Neighborhood Hits	304
SwissProt Accessions	Q9WTP9	Gene names	Vax2, Vex
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 2 (Ventral retina homeodomain protein).

ATBF1_MOUSE
θ value	0.000602161 (rank : 51)	NC score	0.297403 (rank : 289)
Query Neighborhood Hits	426	Target Neighborhood Hits	1841	Shared Neighborhood Hits	362
SwissProt Accessions	Q61329	Gene names	Atbf1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

GBX1_MOUSE
θ value	0.000602161 (rank : 52)	NC score	0.466083 (rank : 47)
Query Neighborhood Hits	426	Target Neighborhood Hits	350	Shared Neighborhood Hits	292
SwissProt Accessions	P82976, Q8CGW5	Gene names	Gbx1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

MSX2_MOUSE
θ value	0.000602161 (rank : 53)	NC score	0.466308 (rank : 45)
Query Neighborhood Hits	426	Target Neighborhood Hits	345	Shared Neighborhood Hits	303
SwissProt Accessions	Q03358, Q63856	Gene names	Msx2, Hox-8.1, Msx-2
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8.1).

HXC10_HUMAN
θ value	0.000786445 (rank : 54)	NC score	0.405785 (rank : 176)
Query Neighborhood Hits	426	Target Neighborhood Hits	417	Shared Neighborhood Hits	294
SwissProt Accessions	Q9NYD6, O15219, O15220, Q9BVD5	Gene names	HOXC10
Domain Architecture
Description	Homeobox protein Hox-C10.

HXC10_MOUSE
θ value	0.000786445 (rank : 55)	NC score	0.406273 (rank : 174)
Query Neighborhood Hits	426	Target Neighborhood Hits	417	Shared Neighborhood Hits	292
SwissProt Accessions	P31257, P31312, Q7TMT7	Gene names	Hoxc10, Hox-3.6, Hoxc-10
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C10 (Hox-3.6).

HXD12_MOUSE
θ value	0.000786445 (rank : 56)	NC score	0.488165 (rank : 39)
Query Neighborhood Hits	426	Target Neighborhood Hits	370	Shared Neighborhood Hits	298
SwissProt Accessions	P23812	Gene names	Hoxd12, Hox-4.7, Hoxd-12
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4.7) (Hox-5.6).

NACAM_MOUSE
θ value	0.000786445 (rank : 57)	NC score	0.055610 (rank : 368)
Query Neighborhood Hits	426	Target Neighborhood Hits	1866	Shared Neighborhood Hits	113
SwissProt Accessions	P70670	Gene names	Naca
Domain Architecture	No domain graphic available
Description	Nascent polypeptide-associated complex subunit alpha, muscle-specific form (Alpha-NAC, muscle-specific form).

BARH1_HUMAN
θ value	0.00102713 (rank : 58)	NC score	0.422658 (rank : 112)
Query Neighborhood Hits	426	Target Neighborhood Hits	373	Shared Neighborhood Hits	311
SwissProt Accessions	Q9BZE3, Q9NY88	Gene names	BARHL1
Domain Architecture
Description	BarH-like 1 homeobox protein.

GBX2_HUMAN
θ value	0.00102713 (rank : 59)	NC score	0.466153 (rank : 46)
Query Neighborhood Hits	426	Target Neighborhood Hits	322	Shared Neighborhood Hits	295
SwissProt Accessions	P52951, O43833, Q53RX5, Q9Y5Y1	Gene names	GBX2
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2).

GBX2_MOUSE
θ value	0.00102713 (rank : 60)	NC score	0.465224 (rank : 49)
Query Neighborhood Hits	426	Target Neighborhood Hits	326	Shared Neighborhood Hits	296
SwissProt Accessions	P48031	Gene names	Gbx2, Mmoxa, Stra7
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2) (Homeobox protein STRA7).

HXB9_HUMAN
θ value	0.00102713 (rank : 61)	NC score	0.413658 (rank : 138)
Query Neighborhood Hits	426	Target Neighborhood Hits	344	Shared Neighborhood Hits	299
SwissProt Accessions	P17482, Q9H1I1	Gene names	HOXB9, HOX2E
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5).

HXB9_MOUSE
θ value	0.00102713 (rank : 62)	NC score	0.412755 (rank : 139)
Query Neighborhood Hits	426	Target Neighborhood Hits	344	Shared Neighborhood Hits	298
SwissProt Accessions	P20615	Gene names	Hoxb9, Hox-2.5, Hoxb-9
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2.5).

BARH1_MOUSE
θ value	0.00134147 (rank : 63)	NC score	0.422757 (rank : 111)
Query Neighborhood Hits	426	Target Neighborhood Hits	350	Shared Neighborhood Hits	309
SwissProt Accessions	P63157, Q9JK26	Gene names	Barhl1, Bhx1, Mbh2
Domain Architecture	No domain graphic available
Description	BarH-like 1 homeobox protein (Bar-class homeodomain protein MBH2) (BarH-related homeobox protein 1).

CDX4_HUMAN
θ value	0.00134147 (rank : 64)	NC score	0.427169 (rank : 100)
Query Neighborhood Hits	426	Target Neighborhood Hits	366	Shared Neighborhood Hits	307
SwissProt Accessions	O14627, Q5JS20	Gene names	CDX4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

HXC9_HUMAN
θ value	0.00134147 (rank : 65)	NC score	0.403345 (rank : 185)
Query Neighborhood Hits	426	Target Neighborhood Hits	339	Shared Neighborhood Hits	293
SwissProt Accessions	P31274, Q9H1I0	Gene names	HOXC9, HOX3B
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3B).

HXC9_MOUSE
θ value	0.00134147 (rank : 66)	NC score	0.403462 (rank : 184)
Query Neighborhood Hits	426	Target Neighborhood Hits	338	Shared Neighborhood Hits	293
SwissProt Accessions	P09633	Gene names	Hoxc9, Hox-3.2, Hoxc-9
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3.2).

HXD12_HUMAN
θ value	0.00134147 (rank : 67)	NC score	0.481182 (rank : 41)
Query Neighborhood Hits	426	Target Neighborhood Hits	334	Shared Neighborhood Hits	298
SwissProt Accessions	P35452, Q9NS03	Gene names	HOXD12, HOX4H
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4H).

LBX1_HUMAN
θ value	0.00134147 (rank : 68)	NC score	0.442014 (rank : 67)
Query Neighborhood Hits	426	Target Neighborhood Hits	357	Shared Neighborhood Hits	310
SwissProt Accessions	P52954	Gene names	LBX1
Domain Architecture
Description	Transcription factor LBX1.

HXA11_MOUSE
θ value	0.00175202 (rank : 69)	NC score	0.431829 (rank : 88)
Query Neighborhood Hits	426	Target Neighborhood Hits	327	Shared Neighborhood Hits	286
SwissProt Accessions	P31311, Q3V026	Gene names	Hoxa11, Hox-1.9, Hoxa-11
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1.9).

MEOX1_HUMAN
θ value	0.00175202 (rank : 70)	NC score	0.463220 (rank : 50)
Query Neighborhood Hits	426	Target Neighborhood Hits	342	Shared Neighborhood Hits	300
SwissProt Accessions	P50221	Gene names	MEOX1, MOX1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

MEOX1_MOUSE
θ value	0.00175202 (rank : 71)	NC score	0.459024 (rank : 52)
Query Neighborhood Hits	426	Target Neighborhood Hits	345	Shared Neighborhood Hits	304
SwissProt Accessions	P32442	Gene names	Meox1, Mox-1, Mox1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

HXA10_MOUSE
θ value	0.00228821 (rank : 72)	NC score	0.396333 (rank : 210)
Query Neighborhood Hits	426	Target Neighborhood Hits	365	Shared Neighborhood Hits	287
SwissProt Accessions	P31310, Q80Y22	Gene names	Hoxa10, Hox-1.8, Hoxa-10
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1.8).

HXA3_MOUSE
θ value	0.00228821 (rank : 73)	NC score	0.398165 (rank : 204)
Query Neighborhood Hits	426	Target Neighborhood Hits	558	Shared Neighborhood Hits	322
SwissProt Accessions	P02831, Q4V9Z8, Q61197	Gene names	Hoxa3, Hox-1.5, Hoxa-3
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1.5) (MO-10).

HXD1_MOUSE
θ value	0.00228821 (rank : 74)	NC score	0.399084 (rank : 200)
Query Neighborhood Hits	426	Target Neighborhood Hits	381	Shared Neighborhood Hits	301
SwissProt Accessions	Q01822	Gene names	Hoxd1, Hox-4.9, Hoxd-1
Domain Architecture
Description	Homeobox protein Hox-D1 (Hox-4.9).

HESX1_MOUSE
θ value	0.00298849 (rank : 75)	NC score	0.490732 (rank : 38)
Query Neighborhood Hits	426	Target Neighborhood Hits	331	Shared Neighborhood Hits	304
SwissProt Accessions	Q61658, Q61047	Gene names	Hesx1, Hes-1, Rpx
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (Anterior- restricted homeobox protein) (Rathke pouch homeo box).

HXD10_HUMAN
θ value	0.00298849 (rank : 76)	NC score	0.415634 (rank : 131)
Query Neighborhood Hits	426	Target Neighborhood Hits	392	Shared Neighborhood Hits	300
SwissProt Accessions	P28358	Gene names	HOXD10, HOX4D
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4D) (Hox-4E).

HXD10_MOUSE
θ value	0.00298849 (rank : 77)	NC score	0.415174 (rank : 133)
Query Neighborhood Hits	426	Target Neighborhood Hits	392	Shared Neighborhood Hits	296
SwissProt Accessions	P28359, Q91WU9	Gene names	Hoxd10, Hox-4.5, Hoxd-10
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4.5) (Hox-5.3).

MDC1_HUMAN
θ value	0.00298849 (rank : 78)	NC score	0.055873 (rank : 365)
Query Neighborhood Hits	426	Target Neighborhood Hits	1446	Shared Neighborhood Hits	81
SwissProt Accessions	Q14676, Q5JP55, Q5JP56, Q5ST83, Q68CQ3, Q86Z06, Q96QC2	Gene names	MDC1, KIAA0170, NFBD1
Domain Architecture	No domain graphic available
Description	Mediator of DNA damage checkpoint protein 1 (Nuclear factor with BRCT domains 1).

ZFHX2_HUMAN
θ value	0.00298849 (rank : 79)	NC score	0.414663 (rank : 136)
Query Neighborhood Hits	426	Target Neighborhood Hits	1178	Shared Neighborhood Hits	328
SwissProt Accessions	Q9C0A1	Gene names	ZFHX2, KIAA1762
Domain Architecture
Description	Zinc finger homeobox protein 2.

ARX_MOUSE
θ value	0.00390308 (rank : 80)	NC score	0.435492 (rank : 80)
Query Neighborhood Hits	426	Target Neighborhood Hits	398	Shared Neighborhood Hits	306
SwissProt Accessions	O35085, Q9QYT4	Gene names	Arx
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

HESX1_HUMAN
θ value	0.00390308 (rank : 81)	NC score	0.483209 (rank : 40)
Query Neighborhood Hits	426	Target Neighborhood Hits	326	Shared Neighborhood Hits	305
SwissProt Accessions	Q9UBX0, Q99667	Gene names	HESX1, HANF
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (hAnf).

HXA10_HUMAN
θ value	0.00390308 (rank : 82)	NC score	0.395843 (rank : 211)
Query Neighborhood Hits	426	Target Neighborhood Hits	334	Shared Neighborhood Hits	281
SwissProt Accessions	P31260, O43370, O43605, Q15949	Gene names	HOXA10, HOX1H
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL).

HXA11_HUMAN
θ value	0.00390308 (rank : 83)	NC score	0.429642 (rank : 91)
Query Neighborhood Hits	426	Target Neighborhood Hits	334	Shared Neighborhood Hits	286
SwissProt Accessions	P31270	Gene names	HOXA11, HOX1I
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1I).

HXC11_HUMAN
θ value	0.00390308 (rank : 84)	NC score	0.441381 (rank : 69)
Query Neighborhood Hits	426	Target Neighborhood Hits	349	Shared Neighborhood Hits	299
SwissProt Accessions	O43248, Q96DH2	Gene names	HOXC11
Domain Architecture
Description	Homeobox protein Hox-C11.

HXD11_HUMAN
θ value	0.00390308 (rank : 85)	NC score	0.438191 (rank : 75)
Query Neighborhood Hits	426	Target Neighborhood Hits	353	Shared Neighborhood Hits	295
SwissProt Accessions	P31277, Q9NS02	Gene names	HOXD11, HOX4F
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4F).

HXD11_MOUSE
θ value	0.00390308 (rank : 86)	NC score	0.433816 (rank : 83)
Query Neighborhood Hits	426	Target Neighborhood Hits	376	Shared Neighborhood Hits	297
SwissProt Accessions	P23813	Gene names	Hoxd11, Hox-4.6, Hoxd-11
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5).

LHX61_HUMAN
θ value	0.00390308 (rank : 87)	NC score	0.303215 (rank : 285)
Query Neighborhood Hits	426	Target Neighborhood Hits	412	Shared Neighborhood Hits	284
SwissProt Accessions	Q9UPM6, Q5T7S8, Q9NTK3, Q9UPM5	Gene names	LHX6, LHX6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1 (Lhx6).

PAX3_HUMAN
θ value	0.00390308 (rank : 88)	NC score	0.361796 (rank : 264)
Query Neighborhood Hits	426	Target Neighborhood Hits	513	Shared Neighborhood Hits	322
SwissProt Accessions	P23760, Q16448	Gene names	PAX3, HUP2
Domain Architecture
Description	Paired box protein Pax-3 (HUP2).

ZHX1_MOUSE
θ value	0.00390308 (rank : 89)	NC score	0.171438 (rank : 305)
Query Neighborhood Hits	426	Target Neighborhood Hits	334	Shared Neighborhood Hits	203
SwissProt Accessions	P70121, Q8BQ68, Q8C6T4, Q8CJG3	Gene names	Zhx1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

ARX_HUMAN
θ value	0.00509761 (rank : 90)	NC score	0.432799 (rank : 84)
Query Neighborhood Hits	426	Target Neighborhood Hits	401	Shared Neighborhood Hits	308
SwissProt Accessions	Q96QS3	Gene names	ARX
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

ESX1L_HUMAN
θ value	0.00509761 (rank : 91)	NC score	0.465732 (rank : 48)
Query Neighborhood Hits	426	Target Neighborhood Hits	498	Shared Neighborhood Hits	318
SwissProt Accessions	Q8N693, Q7Z6K7	Gene names	ESX1L, ESX1R
Domain Architecture
Description	Extraembryonic, spermatogenesis, homeobox 1-like protein.

MSX1_HUMAN
θ value	0.00509761 (rank : 92)	NC score	0.449688 (rank : 56)
Query Neighborhood Hits	426	Target Neighborhood Hits	374	Shared Neighborhood Hits	300
SwissProt Accessions	P28360, Q96NY4	Gene names	MSX1, HOX7
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7).

MSX1_MOUSE
θ value	0.00509761 (rank : 93)	NC score	0.445120 (rank : 65)
Query Neighborhood Hits	426	Target Neighborhood Hits	322	Shared Neighborhood Hits	298
SwissProt Accessions	P13297	Gene names	Msx1, Hox7, Hox7.1
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7) (Hox- 7.1).

PAX6_HUMAN
θ value	0.00509761 (rank : 94)	NC score	0.361527 (rank : 265)
Query Neighborhood Hits	426	Target Neighborhood Hits	383	Shared Neighborhood Hits	308
SwissProt Accessions	P26367, Q6N006, Q99413	Gene names	PAX6, AN2
Domain Architecture
Description	Paired box protein Pax-6 (Oculorhombin) (Aniridia type II protein).

PAX6_MOUSE
θ value	0.00509761 (rank : 95)	NC score	0.361527 (rank : 266)
Query Neighborhood Hits	426	Target Neighborhood Hits	383	Shared Neighborhood Hits	308
SwissProt Accessions	P63015, P32117, P70601, Q62222, Q64037, Q8CEI5, Q8VDB5, Q921Q8	Gene names	Pax6, Pax-6, Sey
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-6 (Oculorhombin).

ZHX1_HUMAN
θ value	0.00509761 (rank : 96)	NC score	0.163623 (rank : 307)
Query Neighborhood Hits	426	Target Neighborhood Hits	307	Shared Neighborhood Hits	188
SwissProt Accessions	Q9UKY1, Q8IWD8	Gene names	ZHX1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

CDX4_MOUSE
θ value	0.00665767 (rank : 97)	NC score	0.418511 (rank : 123)
Query Neighborhood Hits	426	Target Neighborhood Hits	378	Shared Neighborhood Hits	305
SwissProt Accessions	Q07424	Gene names	Cdx4, Cdx-4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

GTSE1_MOUSE
θ value	0.00665767 (rank : 98)	NC score	0.049954 (rank : 376)
Query Neighborhood Hits	426	Target Neighborhood Hits	245	Shared Neighborhood Hits	24
SwissProt Accessions	Q8R080, O89015, Q9CSG9	Gene names	Gtse1, B99
Domain Architecture	No domain graphic available
Description	G2 and S phase expressed protein 1 (Gtse-1) (B99 protein).

HXB1_HUMAN
θ value	0.00665767 (rank : 99)	NC score	0.421637 (rank : 115)
Query Neighborhood Hits	426	Target Neighborhood Hits	356	Shared Neighborhood Hits	299
SwissProt Accessions	P14653	Gene names	HOXB1, HOX2I
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2I).

HXB2_MOUSE
θ value	0.00665767 (rank : 100)	NC score	0.423319 (rank : 108)
Query Neighborhood Hits	426	Target Neighborhood Hits	350	Shared Neighborhood Hits	301
SwissProt Accessions	P0C1T1	Gene names	Hoxb2, Hox-2.8
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-B2 (Hox-2.8).

HXD9_HUMAN
θ value	0.00665767 (rank : 101)	NC score	0.402701 (rank : 189)
Query Neighborhood Hits	426	Target Neighborhood Hits	352	Shared Neighborhood Hits	294
SwissProt Accessions	P28356	Gene names	HOXD9, HOX4C
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2).

HXD9_MOUSE
θ value	0.00665767 (rank : 102)	NC score	0.398637 (rank : 202)
Query Neighborhood Hits	426	Target Neighborhood Hits	359	Shared Neighborhood Hits	297
SwissProt Accessions	P28357, Q3UYS2	Gene names	Hoxd9, Hox-4.4, Hoxd-9
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4.4) (Hox-5.2).

LHX4_HUMAN
θ value	0.00665767 (rank : 103)	NC score	0.382056 (rank : 243)
Query Neighborhood Hits	426	Target Neighborhood Hits	455	Shared Neighborhood Hits	315
SwissProt Accessions	Q969G2, Q8NHE0, Q8TCJ1, Q8WWX2, Q969W2	Gene names	LHX4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

LHX4_MOUSE
θ value	0.00665767 (rank : 104)	NC score	0.382013 (rank : 244)
Query Neighborhood Hits	426	Target Neighborhood Hits	457	Shared Neighborhood Hits	315
SwissProt Accessions	P53776, O08916, Q9R280	Gene names	Lhx4, Gsh-4, Gsh4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

LHX61_MOUSE
θ value	0.00665767 (rank : 105)	NC score	0.286797 (rank : 292)
Query Neighborhood Hits	426	Target Neighborhood Hits	396	Shared Neighborhood Hits	272
SwissProt Accessions	Q9R1R0, Q9R1R1	Gene names	Lhx6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1.

LMX1A_HUMAN
θ value	0.00665767 (rank : 106)	NC score	0.335218 (rank : 280)
Query Neighborhood Hits	426	Target Neighborhood Hits	406	Shared Neighborhood Hits	300
SwissProt Accessions	Q8TE12, Q8TE11	Gene names	LMX1A
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

MSX3_MOUSE
θ value	0.00665767 (rank : 107)	NC score	0.448981 (rank : 58)
Query Neighborhood Hits	426	Target Neighborhood Hits	330	Shared Neighborhood Hits	300
SwissProt Accessions	P70354, P70246, Q03360, Q80W10	Gene names	Msx3, Msx-3
Domain Architecture
Description	Homeobox protein MSX-3.

PARM1_MOUSE
θ value	0.00665767 (rank : 108)	NC score	0.059600 (rank : 361)
Query Neighborhood Hits	426	Target Neighborhood Hits	140	Shared Neighborhood Hits	25
SwissProt Accessions	Q923D3, Q3TTV0, Q3UFU4	Gene names
Domain Architecture	No domain graphic available
Description	Protein PARM-1 precursor.

TLX2_HUMAN
θ value	0.00665767 (rank : 109)	NC score	0.438751 (rank : 73)
Query Neighborhood Hits	426	Target Neighborhood Hits	352	Shared Neighborhood Hits	300
SwissProt Accessions	O43763, Q9UQ48	Gene names	TLX2, HOX11L1, NCX
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Neural crest homeobox protein).

TLX2_MOUSE
θ value	0.00665767 (rank : 110)	NC score	0.439129 (rank : 72)
Query Neighborhood Hits	426	Target Neighborhood Hits	336	Shared Neighborhood Hits	296
SwissProt Accessions	Q61663	Gene names	Tlx2, Hox11l1, Tlx1l1
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Homeobox TLX-2) (PMUR10F).

TP53B_MOUSE
θ value	0.00665767 (rank : 111)	NC score	0.039531 (rank : 383)
Query Neighborhood Hits	426	Target Neighborhood Hits	644	Shared Neighborhood Hits	36
SwissProt Accessions	P70399, Q68FD0, Q8CI97, Q91YC9	Gene names	Tp53bp1, Trp53bp1
Domain Architecture	No domain graphic available
Description	Tumor suppressor p53-binding protein 1 (p53-binding protein 1) (p53BP1) (53BP1).

DLX5_HUMAN
θ value	0.00869519 (rank : 112)	NC score	0.434913 (rank : 81)
Query Neighborhood Hits	426	Target Neighborhood Hits	405	Shared Neighborhood Hits	309
SwissProt Accessions	P56178, Q9UPL1	Gene names	DLX5
Domain Architecture
Description	Homeobox protein DLX-5.

HXC4_MOUSE
θ value	0.00869519 (rank : 113)	NC score	0.420337 (rank : 118)
Query Neighborhood Hits	426	Target Neighborhood Hits	365	Shared Neighborhood Hits	301
SwissProt Accessions	Q08624	Gene names	Hoxc4, Hox-3.5, Hoxc-4
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3.5).

LHX3_HUMAN
θ value	0.00869519 (rank : 114)	NC score	0.388707 (rank : 227)
Query Neighborhood Hits	426	Target Neighborhood Hits	474	Shared Neighborhood Hits	317
SwissProt Accessions	Q9UBR4, Q9NZB5, Q9P0I8, Q9P0I9	Gene names	LHX3
Domain Architecture
Description	LIM/homeobox protein Lhx3.

LHX3_MOUSE
θ value	0.00869519 (rank : 115)	NC score	0.389628 (rank : 223)
Query Neighborhood Hits	426	Target Neighborhood Hits	451	Shared Neighborhood Hits	312
SwissProt Accessions	P50481, Q61800, Q61801	Gene names	Lhx3, Lim-3, Lim3, Plim
Domain Architecture
Description	LIM/homeobox protein Lhx3 (Homeobox protein LIM-3) (Homeobox protein P-LIM) (LIM homeobox protein 3).

LHX6_MOUSE
θ value	0.00869519 (rank : 116)	NC score	0.304378 (rank : 284)
Query Neighborhood Hits	426	Target Neighborhood Hits	399	Shared Neighborhood Hits	284
SwissProt Accessions	O88706	Gene names	Lhx6
Domain Architecture
Description	LIM/homeobox protein Lhx6.

NKX28_MOUSE
θ value	0.00869519 (rank : 117)	NC score	0.435584 (rank : 79)
Query Neighborhood Hits	426	Target Neighborhood Hits	347	Shared Neighborhood Hits	306
SwissProt Accessions	O70584	Gene names	Nkx2-8, Nkx-2.9, Nkx2-9, Nkx2h
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H) (Homeobox protein Nkx-2.9).

SATB1_HUMAN
θ value	0.00869519 (rank : 118)	NC score	0.067322 (rank : 352)
Query Neighborhood Hits	426	Target Neighborhood Hits	130	Shared Neighborhood Hits	51
SwissProt Accessions	Q01826	Gene names	SATB1
Domain Architecture
Description	DNA-binding protein SATB1 (Special AT-rich sequence-binding protein 1).

SATB1_MOUSE
θ value	0.00869519 (rank : 119)	NC score	0.068593 (rank : 351)
Query Neighborhood Hits	426	Target Neighborhood Hits	130	Shared Neighborhood Hits	56
SwissProt Accessions	Q60611	Gene names	Satb1
Domain Architecture
Description	DNA-binding protein SATB1 (Special AT-rich sequence-binding protein 1).

BARH2_HUMAN
θ value	0.0113563 (rank : 120)	NC score	0.420616 (rank : 116)
Query Neighborhood Hits	426	Target Neighborhood Hits	419	Shared Neighborhood Hits	312
SwissProt Accessions	Q9NY43, Q7Z4N7	Gene names	BARHL2
Domain Architecture
Description	BarH-like 2 homeobox protein.

BARH2_MOUSE
θ value	0.0113563 (rank : 121)	NC score	0.416952 (rank : 127)
Query Neighborhood Hits	426	Target Neighborhood Hits	397	Shared Neighborhood Hits	308
SwissProt Accessions	Q8VIB5, Q66L43	Gene names	Barhl2, Barh1, Mbh1
Domain Architecture	No domain graphic available
Description	BarH-like 2 homeobox protein (Bar-class homeodomain protein MBH1) (Homeobox protein B-H1).

GSCL_HUMAN
θ value	0.0113563 (rank : 122)	NC score	0.452951 (rank : 54)
Query Neighborhood Hits	426	Target Neighborhood Hits	343	Shared Neighborhood Hits	305
SwissProt Accessions	O15499	Gene names	GSCL
Domain Architecture
Description	Homeobox protein goosecoid-like (GSC-2).

HXA13_HUMAN
θ value	0.0113563 (rank : 123)	NC score	0.399246 (rank : 199)
Query Neighborhood Hits	426	Target Neighborhood Hits	353	Shared Neighborhood Hits	298
SwissProt Accessions	P31271, O43371	Gene names	HOXA13, HOX1J
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1J).

HXA13_MOUSE
θ value	0.0113563 (rank : 124)	NC score	0.398968 (rank : 201)
Query Neighborhood Hits	426	Target Neighborhood Hits	351	Shared Neighborhood Hits	298
SwissProt Accessions	Q62424	Gene names	Hoxa13, Hox-1.10
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1.10).

HXD13_HUMAN
θ value	0.0113563 (rank : 125)	NC score	0.383067 (rank : 241)
Query Neighborhood Hits	426	Target Neighborhood Hits	332	Shared Neighborhood Hits	296
SwissProt Accessions	P35453	Gene names	HOXD13, HOX4I
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4I).

HXD13_MOUSE
θ value	0.0113563 (rank : 126)	NC score	0.382821 (rank : 242)
Query Neighborhood Hits	426	Target Neighborhood Hits	324	Shared Neighborhood Hits	293
SwissProt Accessions	P70217, Q2VPB0, Q2VPB1, Q64177	Gene names	Hoxd13, Hox-4.8
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4.8).

LBX1_MOUSE
θ value	0.0113563 (rank : 127)	NC score	0.439773 (rank : 70)
Query Neighborhood Hits	426	Target Neighborhood Hits	349	Shared Neighborhood Hits	307
SwissProt Accessions	P52955	Gene names	Lbx1, Lbx1h
Domain Architecture
Description	Transcription factor LBX1.

PAX4_HUMAN
θ value	0.0113563 (rank : 128)	NC score	0.404164 (rank : 182)
Query Neighborhood Hits	426	Target Neighborhood Hits	367	Shared Neighborhood Hits	314
SwissProt Accessions	O43316, O95161, Q6B0H0	Gene names	PAX4
Domain Architecture
Description	Paired box protein Pax-4.

TCF8_MOUSE
θ value	0.0113563 (rank : 129)	NC score	0.021814 (rank : 409)
Query Neighborhood Hits	426	Target Neighborhood Hits	1067	Shared Neighborhood Hits	68
SwissProt Accessions	Q64318, Q62519	Gene names	Tcf8, Zfhx1a, Zfx1a, Zfx1ha
Domain Architecture
Description	Transcription factor 8 (Zinc finger homeobox protein 1a) (MEB1) (Delta EF1).

CDX2_HUMAN
θ value	0.0148317 (rank : 130)	NC score	0.405331 (rank : 178)
Query Neighborhood Hits	426	Target Neighborhood Hits	330	Shared Neighborhood Hits	286
SwissProt Accessions	Q99626, O00503, Q969L8	Gene names	CDX2, CDX3
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2) (CDX-3).

EVX2_HUMAN
θ value	0.0148317 (rank : 131)	NC score	0.444309 (rank : 66)
Query Neighborhood Hits	426	Target Neighborhood Hits	325	Shared Neighborhood Hits	298
SwissProt Accessions	Q03828	Gene names	EVX2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

EVX2_MOUSE
θ value	0.0148317 (rank : 132)	NC score	0.446716 (rank : 62)
Query Neighborhood Hits	426	Target Neighborhood Hits	327	Shared Neighborhood Hits	301
SwissProt Accessions	P49749	Gene names	Evx2, Evx-2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

LMX1B_HUMAN
θ value	0.0148317 (rank : 133)	NC score	0.337980 (rank : 278)
Query Neighborhood Hits	426	Target Neighborhood Hits	404	Shared Neighborhood Hits	295
SwissProt Accessions	O60663, O75463	Gene names	LMX1B
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

LMX1B_MOUSE
θ value	0.0148317 (rank : 134)	NC score	0.337539 (rank : 279)
Query Neighborhood Hits	426	Target Neighborhood Hits	394	Shared Neighborhood Hits	294
SwissProt Accessions	O88609	Gene names	Lmx1b
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

CDX1_HUMAN
θ value	0.0193708 (rank : 135)	NC score	0.410985 (rank : 149)
Query Neighborhood Hits	426	Target Neighborhood Hits	382	Shared Neighborhood Hits	298
SwissProt Accessions	P47902, Q4VAU4, Q9NYK8	Gene names	CDX1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

CDX1_MOUSE
θ value	0.0193708 (rank : 136)	NC score	0.407294 (rank : 170)
Query Neighborhood Hits	426	Target Neighborhood Hits	379	Shared Neighborhood Hits	292
SwissProt Accessions	P18111, Q8VCF7	Gene names	Cdx1, Cdx-1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

DLX5_MOUSE
θ value	0.0193708 (rank : 137)	NC score	0.429382 (rank : 92)
Query Neighborhood Hits	426	Target Neighborhood Hits	434	Shared Neighborhood Hits	309
SwissProt Accessions	P70396, O54876, O54877, O54878, Q9JJ45	Gene names	Dlx5
Domain Architecture
Description	Homeobox protein DLX-5.

EMX2_HUMAN
θ value	0.0193708 (rank : 138)	NC score	0.428944 (rank : 94)
Query Neighborhood Hits	426	Target Neighborhood Hits	341	Shared Neighborhood Hits	305
SwissProt Accessions	Q04743, Q96NN8, Q9BQF4	Gene names	EMX2
Domain Architecture
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

EMX2_MOUSE
θ value	0.0193708 (rank : 139)	NC score	0.428977 (rank : 93)
Query Neighborhood Hits	426	Target Neighborhood Hits	340	Shared Neighborhood Hits	305
SwissProt Accessions	Q04744, Q80UE7	Gene names	Emx2, Emx-2
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

GP112_HUMAN
θ value	0.0193708 (rank : 140)	NC score	0.026412 (rank : 399)
Query Neighborhood Hits	426	Target Neighborhood Hits	441	Shared Neighborhood Hits	41
SwissProt Accessions	Q8IZF6, Q86SM6	Gene names	GPR112
Domain Architecture	No domain graphic available
Description	Probable G-protein coupled receptor 112.

HXA3_HUMAN
θ value	0.0193708 (rank : 141)	NC score	0.396649 (rank : 209)
Query Neighborhood Hits	426	Target Neighborhood Hits	535	Shared Neighborhood Hits	322
SwissProt Accessions	O43365	Gene names	HOXA3, HOX1E
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1E).

HXB7_MOUSE
θ value	0.0193708 (rank : 142)	NC score	0.377025 (rank : 252)
Query Neighborhood Hits	426	Target Neighborhood Hits	314	Shared Neighborhood Hits	288
SwissProt Accessions	P09024, Q3UW15	Gene names	Hoxb7, Hox-2.3, Hoxb-7
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2.3) (MUB1) (Homeobox protein MH-22B).

MAGE1_HUMAN
θ value	0.0193708 (rank : 143)	NC score	0.034876 (rank : 387)
Query Neighborhood Hits	426	Target Neighborhood Hits	1389	Shared Neighborhood Hits	102
SwissProt Accessions	Q9HCI5, Q86TG0, Q8TD92, Q9H216	Gene names	MAGEE1, HCA1, KIAA1587
Domain Architecture	No domain graphic available
Description	Melanoma-associated antigen E1 (MAGE-E1 antigen) (Hepatocellular carcinoma-associated protein 1).

PAX4_MOUSE
θ value	0.0193708 (rank : 144)	NC score	0.403343 (rank : 186)
Query Neighborhood Hits	426	Target Neighborhood Hits	370	Shared Neighborhood Hits	313
SwissProt Accessions	P32115, P97341, Q9QUR1, Q9R091	Gene names	Pax4, Pax-4
Domain Architecture
Description	Paired box protein Pax-4.

EMX1_HUMAN
θ value	0.0252991 (rank : 145)	NC score	0.432203 (rank : 86)
Query Neighborhood Hits	426	Target Neighborhood Hits	336	Shared Neighborhood Hits	306
SwissProt Accessions	Q04741, Q86XB0	Gene names	EMX1
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty spiracles- like protein 1).

HXB13_HUMAN
θ value	0.0252991 (rank : 146)	NC score	0.391132 (rank : 219)
Query Neighborhood Hits	426	Target Neighborhood Hits	377	Shared Neighborhood Hits	299
SwissProt Accessions	Q92826, Q96QM4, Q99810	Gene names	HOXB13
Domain Architecture
Description	Homeobox protein Hox-B13.

HXB7_HUMAN
θ value	0.0252991 (rank : 147)	NC score	0.376116 (rank : 255)
Query Neighborhood Hits	426	Target Neighborhood Hits	311	Shared Neighborhood Hits	288
SwissProt Accessions	P09629, Q15957	Gene names	HOXB7, HOX2C
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2C) (HHO.C1).

HXC13_HUMAN
θ value	0.0252991 (rank : 148)	NC score	0.410244 (rank : 153)
Query Neighborhood Hits	426	Target Neighborhood Hits	336	Shared Neighborhood Hits	300
SwissProt Accessions	P31276, Q96J32, Q9NR24, Q9NYD5	Gene names	HOXC13, HOX3G
Domain Architecture
Description	Homeobox protein Hox-C13 (Hox-3G).

HXC13_MOUSE
θ value	0.0252991 (rank : 149)	NC score	0.410180 (rank : 155)
Query Neighborhood Hits	426	Target Neighborhood Hits	337	Shared Neighborhood Hits	300
SwissProt Accessions	P50207, Q53Z78, Q920I7	Gene names	Hoxc13, Hoxc-13
Domain Architecture
Description	Homeobox protein Hox-C13.

HXC4_HUMAN
θ value	0.0252991 (rank : 150)	NC score	0.406324 (rank : 173)
Query Neighborhood Hits	426	Target Neighborhood Hits	361	Shared Neighborhood Hits	301
SwissProt Accessions	P09017	Gene names	HOXC4, HOX3E
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3E) (CP19).

LMX1A_MOUSE
θ value	0.0252991 (rank : 151)	NC score	0.333376 (rank : 281)
Query Neighborhood Hits	426	Target Neighborhood Hits	405	Shared Neighborhood Hits	298
SwissProt Accessions	Q9JKU8	Gene names	Lmx1a
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

PAPOB_HUMAN
θ value	0.0252991 (rank : 152)	NC score	0.023137 (rank : 407)
Query Neighborhood Hits	426	Target Neighborhood Hits	25	Shared Neighborhood Hits	6
SwissProt Accessions	Q9NRJ5, Q8NE14	Gene names	PAPOLB, PAPT
Domain Architecture
Description	Poly(A) polymerase beta (EC 2.7.7.19) (PAP beta) (Polynucleotide adenylyltransferase beta) (Testis-specific poly(A) polymerase).

BSH_MOUSE
θ value	0.0330416 (rank : 153)	NC score	0.446960 (rank : 61)
Query Neighborhood Hits	426	Target Neighborhood Hits	349	Shared Neighborhood Hits	307
SwissProt Accessions	Q810B3	Gene names	Bsx
Domain Architecture	No domain graphic available
Description	Brain-specific homeobox protein homolog.

DBX1_MOUSE
θ value	0.0330416 (rank : 154)	NC score	0.437263 (rank : 77)
Query Neighborhood Hits	426	Target Neighborhood Hits	346	Shared Neighborhood Hits	305
SwissProt Accessions	P52950	Gene names	Dbx1, Dbx
Domain Architecture
Description	Homeobox protein DBX1.

EVX1_HUMAN
θ value	0.0330416 (rank : 155)	NC score	0.448770 (rank : 59)
Query Neighborhood Hits	426	Target Neighborhood Hits	349	Shared Neighborhood Hits	305
SwissProt Accessions	P49640	Gene names	EVX1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

EVX1_MOUSE
θ value	0.0330416 (rank : 156)	NC score	0.449421 (rank : 57)
Query Neighborhood Hits	426	Target Neighborhood Hits	350	Shared Neighborhood Hits	304
SwissProt Accessions	P23683	Gene names	Evx1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

GSCL_MOUSE
θ value	0.0330416 (rank : 157)	NC score	0.441906 (rank : 68)
Query Neighborhood Hits	426	Target Neighborhood Hits	339	Shared Neighborhood Hits	306
SwissProt Accessions	P56916	Gene names	Gscl
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid-like (GSC-2).

GSC_HUMAN
θ value	0.0330416 (rank : 158)	NC score	0.453179 (rank : 53)
Query Neighborhood Hits	426	Target Neighborhood Hits	369	Shared Neighborhood Hits	315
SwissProt Accessions	P56915, Q86YR1	Gene names	GSC
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid.

GSC_MOUSE
θ value	0.0330416 (rank : 159)	NC score	0.452759 (rank : 55)
Query Neighborhood Hits	426	Target Neighborhood Hits	368	Shared Neighborhood Hits	314
SwissProt Accessions	Q02591	Gene names	Gsc
Domain Architecture
Description	Homeobox protein goosecoid.

PAX3_MOUSE
θ value	0.0330416 (rank : 160)	NC score	0.361954 (rank : 263)
Query Neighborhood Hits	426	Target Neighborhood Hits	478	Shared Neighborhood Hits	321
SwissProt Accessions	P24610, Q3UFQ9, Q8BRE7, Q9CXI6	Gene names	Pax3, Pax-3
Domain Architecture
Description	Paired box protein Pax-3.

PITX3_HUMAN
θ value	0.0330416 (rank : 161)	NC score	0.410816 (rank : 150)
Query Neighborhood Hits	426	Target Neighborhood Hits	366	Shared Neighborhood Hits	311
SwissProt Accessions	O75364	Gene names	PITX3, PTX3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

HCFC1_MOUSE
θ value	0.0431538 (rank : 162)	NC score	0.049489 (rank : 377)
Query Neighborhood Hits	426	Target Neighborhood Hits	348	Shared Neighborhood Hits	39
SwissProt Accessions	Q61191, Q684R1, Q7TSB0, Q8C2D0, Q9QWH2	Gene names	Hcfc1
Domain Architecture	No domain graphic available
Description	Host cell factor (HCF) (HCF-1) (C1 factor) [Contains: HCF N-terminal chain 1; HCF N-terminal chain 2; HCF N-terminal chain 3; HCF N- terminal chain 4; HCF N-terminal chain 5; HCF N-terminal chain 6; HCF C-terminal chain 1; HCF C-terminal chain 2; HCF C-terminal chain 3; HCF C-terminal chain 4; HCF C-terminal chain 5; HCF C-terminal chain 6].

HXA1_HUMAN
θ value	0.0431538 (rank : 163)	NC score	0.416724 (rank : 128)
Query Neighborhood Hits	426	Target Neighborhood Hits	334	Shared Neighborhood Hits	298
SwissProt Accessions	P49639, O43363	Gene names	HOXA1, HOX1F
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1F).

HXA1_MOUSE
θ value	0.0431538 (rank : 164)	NC score	0.419905 (rank : 121)
Query Neighborhood Hits	426	Target Neighborhood Hits	341	Shared Neighborhood Hits	299
SwissProt Accessions	P09022, P15463	Gene names	Hoxa1, Era-1, Hox-1.6, Hoxa-1
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399).

HXB1_MOUSE
θ value	0.0431538 (rank : 165)	NC score	0.420248 (rank : 119)
Query Neighborhood Hits	426	Target Neighborhood Hits	341	Shared Neighborhood Hits	299
SwissProt Accessions	P17919, Q3ZAY6, Q9CYH3	Gene names	Hoxb1, Hox-2.9, Hoxb-1
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2.9).

HXC8_HUMAN
θ value	0.0431538 (rank : 166)	NC score	0.376890 (rank : 254)
Query Neighborhood Hits	426	Target Neighborhood Hits	327	Shared Neighborhood Hits	290
SwissProt Accessions	P31273, O15221, O15362	Gene names	HOXC8, HOX3A
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3A).

HXC8_MOUSE
θ value	0.0431538 (rank : 167)	NC score	0.376895 (rank : 253)
Query Neighborhood Hits	426	Target Neighborhood Hits	327	Shared Neighborhood Hits	290
SwissProt Accessions	P09025	Gene names	Hoxc8, Hox-3.1, Hoxc-8
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3.1) (M31).

OTX1_MOUSE
θ value	0.0431538 (rank : 168)	NC score	0.403769 (rank : 183)
Query Neighborhood Hits	426	Target Neighborhood Hits	372	Shared Neighborhood Hits	310
SwissProt Accessions	P80205	Gene names	Otx1, Otx-1
Domain Architecture
Description	Homeobox protein OTX1.

PRRX2_MOUSE
θ value	0.0431538 (rank : 169)	NC score	0.422815 (rank : 110)
Query Neighborhood Hits	426	Target Neighborhood Hits	351	Shared Neighborhood Hits	306
SwissProt Accessions	Q06348, Q61651	Gene names	Prrx2, Prx2, S8
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Homeobox protein S8).

RX_MOUSE
θ value	0.0431538 (rank : 170)	NC score	0.409669 (rank : 158)
Query Neighborhood Hits	426	Target Neighborhood Hits	429	Shared Neighborhood Hits	310
SwissProt Accessions	O35602, O08748	Gene names	Rax, Rx
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

TCF8_HUMAN
θ value	0.0431538 (rank : 171)	NC score	0.036439 (rank : 386)
Query Neighborhood Hits	426	Target Neighborhood Hits	1057	Shared Neighborhood Hits	56
SwissProt Accessions	P37275, Q12924, Q13800	Gene names	TCF8, AREB6
Domain Architecture
Description	Transcription factor 8 (NIL-2-A zinc finger protein) (Negative regulator of IL2).

CRX_MOUSE
θ value	0.0563607 (rank : 172)	NC score	0.427242 (rank : 99)
Query Neighborhood Hits	426	Target Neighborhood Hits	359	Shared Neighborhood Hits	307
SwissProt Accessions	O54751	Gene names	Crx
Domain Architecture
Description	Cone-rod homeobox protein.

GSHI_HUMAN
θ value	0.0563607 (rank : 173)	NC score	0.408746 (rank : 165)
Query Neighborhood Hits	426	Target Neighborhood Hits	314	Shared Neighborhood Hits	291
SwissProt Accessions	Q9H4S2	Gene names	GSH1
Domain Architecture
Description	Homeobox protein GSH-1.

GSHI_MOUSE
θ value	0.0563607 (rank : 174)	NC score	0.407290 (rank : 171)
Query Neighborhood Hits	426	Target Neighborhood Hits	313	Shared Neighborhood Hits	289
SwissProt Accessions	P31315	Gene names	Gsh1, Gsh-1
Domain Architecture
Description	Homeobox protein GSH-1.

HCFC1_HUMAN
θ value	0.0563607 (rank : 175)	NC score	0.047300 (rank : 378)
Query Neighborhood Hits	426	Target Neighborhood Hits	331	Shared Neighborhood Hits	31
SwissProt Accessions	P51610, Q6P4G5	Gene names	HCFC1, HCF1
Domain Architecture	No domain graphic available
Description	Host cell factor (HCF) (HCF-1) (C1 factor) (VP16 accessory protein) (VCAF) (CFF) [Contains: HCF N-terminal chain 1; HCF N-terminal chain 2; HCF N-terminal chain 3; HCF N-terminal chain 4; HCF N-terminal chain 5; HCF N-terminal chain 6; HCF C-terminal chain 1; HCF C- terminal chain 2; HCF C-terminal chain 3; HCF C-terminal chain 4; HCF C-terminal chain 5; HCF C-terminal chain 6].

HMX3_MOUSE
θ value	0.0563607 (rank : 176)	NC score	0.446651 (rank : 63)
Query Neighborhood Hits	426	Target Neighborhood Hits	342	Shared Neighborhood Hits	300
SwissProt Accessions	P42581	Gene names	Hmx3, Nkx-5.1, Nkx5-1
Domain Architecture
Description	Homeobox protein HMX3 (Homeobox protein Nkx-5.1).

HXB13_MOUSE
θ value	0.0563607 (rank : 177)	NC score	0.389194 (rank : 225)
Query Neighborhood Hits	426	Target Neighborhood Hits	384	Shared Neighborhood Hits	295
SwissProt Accessions	P70321, Q80Y12	Gene names	Hoxb13
Domain Architecture
Description	Homeobox protein Hox-B13.

HXB3_HUMAN
θ value	0.0563607 (rank : 178)	NC score	0.383325 (rank : 240)
Query Neighborhood Hits	426	Target Neighborhood Hits	559	Shared Neighborhood Hits	305
SwissProt Accessions	P14651, O95615, P17484	Gene names	HOXB3, HOX2G
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7).

HXB3_MOUSE
θ value	0.0563607 (rank : 179)	NC score	0.388955 (rank : 226)
Query Neighborhood Hits	426	Target Neighborhood Hits	493	Shared Neighborhood Hits	300
SwissProt Accessions	P09026, P10285, Q4PJ06, Q61680	Gene names	Hoxb3, Hox-2.7, Hoxb-3
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2.7) (Homeobox protein MH-23).

HXD1_HUMAN
θ value	0.0563607 (rank : 180)	NC score	0.395667 (rank : 212)
Query Neighborhood Hits	426	Target Neighborhood Hits	337	Shared Neighborhood Hits	294
SwissProt Accessions	Q9GZZ0	Gene names	HOXD1
Domain Architecture
Description	Homeobox protein Hox-D1.

MEOX2_HUMAN
θ value	0.0563607 (rank : 181)	NC score	0.447127 (rank : 60)
Query Neighborhood Hits	426	Target Neighborhood Hits	340	Shared Neighborhood Hits	299
SwissProt Accessions	P50222, O75263, Q9UPL6	Gene names	MEOX2, GAX, MOX2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth arrest-specific homeobox).

MEOX2_MOUSE
θ value	0.0563607 (rank : 182)	NC score	0.446349 (rank : 64)
Query Neighborhood Hits	426	Target Neighborhood Hits	341	Shared Neighborhood Hits	299
SwissProt Accessions	P32443, Q544T6	Gene names	Meox2, Gax, Mox-2, Mox2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2).

MY18B_HUMAN
θ value	0.0563607 (rank : 183)	NC score	0.003681 (rank : 449)
Query Neighborhood Hits	426	Target Neighborhood Hits	1299	Shared Neighborhood Hits	33
SwissProt Accessions	Q8IUG5, Q8NDI8, Q8TE65, Q8WWS0, Q96KH2, Q96KR8, Q96KR9	Gene names	MYO18B
Domain Architecture
Description	Myosin-18B (Myosin XVIIIb).

NKX28_HUMAN
θ value	0.0563607 (rank : 184)	NC score	0.421783 (rank : 114)
Query Neighborhood Hits	426	Target Neighborhood Hits	352	Shared Neighborhood Hits	307
SwissProt Accessions	O15522	Gene names	NKX2-8, NKX-2.8, NKX2G, NKX2H
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H).

NKX31_MOUSE
θ value	0.0563607 (rank : 185)	NC score	0.431500 (rank : 90)
Query Neighborhood Hits	426	Target Neighborhood Hits	379	Shared Neighborhood Hits	300
SwissProt Accessions	P97436, O09087	Gene names	Nkx3-1, Nkx-3.1, Nkx3a
Domain Architecture
Description	Homeobox protein Nkx-3.1.

OTX1_HUMAN
θ value	0.0563607 (rank : 186)	NC score	0.406003 (rank : 175)
Query Neighborhood Hits	426	Target Neighborhood Hits	379	Shared Neighborhood Hits	313
SwissProt Accessions	P32242, Q53TG6	Gene names	OTX1
Domain Architecture
Description	Homeobox protein OTX1.

PITX2_HUMAN
θ value	0.0563607 (rank : 187)	NC score	0.401513 (rank : 194)
Query Neighborhood Hits	426	Target Neighborhood Hits	381	Shared Neighborhood Hits	313
SwissProt Accessions	Q99697, O60578, O60579, O60580, Q9BY17	Gene names	PITX2, ARP1, RGS, RIEG, RIEG1
Domain Architecture
Description	Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription factor) (Solurshin) (ALL1-responsive protein ARP1).

PITX2_MOUSE
θ value	0.0563607 (rank : 188)	NC score	0.402350 (rank : 192)
Query Neighborhood Hits	426	Target Neighborhood Hits	383	Shared Neighborhood Hits	313
SwissProt Accessions	P97474, O08646, O70336, P97933, Q9JLA0, Q9QXB8, Q9R1V9, Q9Z141	Gene names	Pitx2, Arp1, Brx1, Otlx2, Ptx2, Rgs
Domain Architecture
Description	Pituitary homeobox 2 (Orthodenticle-like homeobox 2) (Solurshin) (ALL1-responsive protein ARP1) (BRX1 homeoprotein) (Paired-like homeodomain transcription factor Munc 30).

PITX3_MOUSE
θ value	0.0563607 (rank : 189)	NC score	0.412177 (rank : 143)
Query Neighborhood Hits	426	Target Neighborhood Hits	380	Shared Neighborhood Hits	312
SwissProt Accessions	O35160	Gene names	Pitx3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

CDX2_MOUSE
θ value	0.0736092 (rank : 190)	NC score	0.410503 (rank : 152)
Query Neighborhood Hits	426	Target Neighborhood Hits	336	Shared Neighborhood Hits	291
SwissProt Accessions	P43241	Gene names	Cdx2, Cdx-2
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2).

CUTL1_HUMAN
θ value	0.0736092 (rank : 191)	NC score	0.133931 (rank : 326)
Query Neighborhood Hits	426	Target Neighborhood Hits	1574	Shared Neighborhood Hits	219
SwissProt Accessions	P39880, Q6NYH4, Q9UEV5	Gene names	CUTL1
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP).

CUTL2_MOUSE
θ value	0.0736092 (rank : 192)	NC score	0.180322 (rank : 300)
Query Neighborhood Hits	426	Target Neighborhood Hits	771	Shared Neighborhood Hits	170
SwissProt Accessions	P70298	Gene names	Cutl2
Domain Architecture
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

GSH2_MOUSE
θ value	0.0736092 (rank : 193)	NC score	0.399550 (rank : 198)
Query Neighborhood Hits	426	Target Neighborhood Hits	319	Shared Neighborhood Hits	291
SwissProt Accessions	P31316	Gene names	Gsh2, Gsh-2
Domain Architecture
Description	Homeobox protein GSH-2.

HXB8_HUMAN
θ value	0.0736092 (rank : 194)	NC score	0.402813 (rank : 188)
Query Neighborhood Hits	426	Target Neighborhood Hits	324	Shared Neighborhood Hits	295
SwissProt Accessions	P17481, Q9H1I2	Gene names	HOXB8, HOX2D
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4).

HXB8_MOUSE
θ value	0.0736092 (rank : 195)	NC score	0.402907 (rank : 187)
Query Neighborhood Hits	426	Target Neighborhood Hits	325	Shared Neighborhood Hits	296
SwissProt Accessions	P09632	Gene names	Hoxb8, Hox-2.4, Hoxb-8
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2.4).

MUC1_HUMAN
θ value	0.0736092 (rank : 196)	NC score	0.030157 (rank : 391)
Query Neighborhood Hits	426	Target Neighborhood Hits	975	Shared Neighborhood Hits	72
SwissProt Accessions	P15941, P13931, P15942, P17626, Q14128, Q14876, Q16437, Q16442, Q16615, Q9BXA4, Q9UE75, Q9UE76, Q9UQL1, Q9Y4J2	Gene names	MUC1
Domain Architecture
Description	Mucin-1 precursor (MUC-1) (Polymorphic epithelial mucin) (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) (H23AG) (Peanut- reactive urinary mucin) (PUM) (Breast carcinoma-associated antigen DF3) (CD227 antigen).

PAX7_HUMAN
θ value	0.0736092 (rank : 197)	NC score	0.359031 (rank : 268)
Query Neighborhood Hits	426	Target Neighborhood Hits	456	Shared Neighborhood Hits	321
SwissProt Accessions	P23759	Gene names	PAX7, HUP1
Domain Architecture
Description	Paired box protein Pax-7 (HUP1).

PAX7_MOUSE
θ value	0.0736092 (rank : 198)	NC score	0.358796 (rank : 270)
Query Neighborhood Hits	426	Target Neighborhood Hits	422	Shared Neighborhood Hits	319
SwissProt Accessions	P47239, Q9ES16	Gene names	Pax7, Pax-7
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-7.

PRRX2_HUMAN
θ value	0.0736092 (rank : 199)	NC score	0.424900 (rank : 105)
Query Neighborhood Hits	426	Target Neighborhood Hits	348	Shared Neighborhood Hits	305
SwissProt Accessions	Q99811, Q9UIB3	Gene names	PRRX2, PMX2, PRX2
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Paired-related homeobox protein 2).

TLX3_HUMAN
θ value	0.0736092 (rank : 200)	NC score	0.410593 (rank : 151)
Query Neighborhood Hits	426	Target Neighborhood Hits	403	Shared Neighborhood Hits	299
SwissProt Accessions	O43711, Q96AD3	Gene names	TLX3, HOX11L2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox protein Hox-11L2).

TLX3_MOUSE
θ value	0.0736092 (rank : 201)	NC score	0.409717 (rank : 157)
Query Neighborhood Hits	426	Target Neighborhood Hits	346	Shared Neighborhood Hits	301
SwissProt Accessions	O55144	Gene names	Tlx3, Hox11l2, Rnx, Tlx1l2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox TLX-3) (Homeobox protein Hox-11L2) (Respiratory neuron homeobox protein).

VSX1_HUMAN
θ value	0.0736092 (rank : 202)	NC score	0.402469 (rank : 190)
Query Neighborhood Hits	426	Target Neighborhood Hits	344	Shared Neighborhood Hits	305
SwissProt Accessions	Q9NZR4, Q5TF40, Q5TF41, Q9HCU3, Q9NU27	Gene names	VSX1, RINX
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

VSX1_MOUSE
θ value	0.0736092 (rank : 203)	NC score	0.398600 (rank : 203)
Query Neighborhood Hits	426	Target Neighborhood Hits	356	Shared Neighborhood Hits	303
SwissProt Accessions	Q91V10	Gene names	Vsx1, Rinx
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

BARX1_HUMAN
θ value	0.0961366 (rank : 204)	NC score	0.411450 (rank : 147)
Query Neighborhood Hits	426	Target Neighborhood Hits	326	Shared Neighborhood Hits	297
SwissProt Accessions	Q9HBU1	Gene names	BARX1
Domain Architecture
Description	Homeobox protein BarH-like 1.

BARX1_MOUSE
θ value	0.0961366 (rank : 205)	NC score	0.411108 (rank : 148)
Query Neighborhood Hits	426	Target Neighborhood Hits	324	Shared Neighborhood Hits	297
SwissProt Accessions	Q9ER42, O09066, P70159, Q9ERV2	Gene names	Barx1
Domain Architecture
Description	Homeobox protein BarH-like 1.

CD45_HUMAN
θ value	0.0961366 (rank : 206)	NC score	0.007362 (rank : 442)
Query Neighborhood Hits	426	Target Neighborhood Hits	243	Shared Neighborhood Hits	21
SwissProt Accessions	P08575, Q16614, Q9H0Y6	Gene names	PTPRC, CD45
Domain Architecture
Description	Leukocyte common antigen precursor (EC 3.1.3.48) (L-CA) (CD45 antigen) (T200).

CUTL2_HUMAN
θ value	0.0961366 (rank : 207)	NC score	0.182386 (rank : 299)
Query Neighborhood Hits	426	Target Neighborhood Hits	906	Shared Neighborhood Hits	172
SwissProt Accessions	O14529	Gene names	CUTL2, KIAA0293
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

DLX3_HUMAN
θ value	0.0961366 (rank : 208)	NC score	0.431807 (rank : 89)
Query Neighborhood Hits	426	Target Neighborhood Hits	369	Shared Neighborhood Hits	313
SwissProt Accessions	O60479	Gene names	DLX3
Domain Architecture
Description	Homeobox protein DLX-3.

DLX3_MOUSE
θ value	0.0961366 (rank : 209)	NC score	0.431861 (rank : 87)
Query Neighborhood Hits	426	Target Neighborhood Hits	367	Shared Neighborhood Hits	313
SwissProt Accessions	Q64205	Gene names	Dlx3
Domain Architecture
Description	Homeobox protein DLX-3.

GSH2_HUMAN
θ value	0.0961366 (rank : 210)	NC score	0.399943 (rank : 197)
Query Neighborhood Hits	426	Target Neighborhood Hits	324	Shared Neighborhood Hits	292
SwissProt Accessions	Q9BZM3	Gene names	GSH2
Domain Architecture
Description	Homeobox protein GSH-2.

HXA7_MOUSE
θ value	0.0961366 (rank : 211)	NC score	0.370035 (rank : 260)
Query Neighborhood Hits	426	Target Neighborhood Hits	318	Shared Neighborhood Hits	289
SwissProt Accessions	P02830, Q544P0	Gene names	Hoxa7, Hox-1.1, Hoxa-7
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1.1) (M6-12) (M6).

HXC5_HUMAN
θ value	0.0961366 (rank : 212)	NC score	0.384057 (rank : 236)
Query Neighborhood Hits	426	Target Neighborhood Hits	316	Shared Neighborhood Hits	285
SwissProt Accessions	Q00444	Gene names	HOXC5, HOX3D
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3D) (CP11).

HXC5_MOUSE
θ value	0.0961366 (rank : 213)	NC score	0.383768 (rank : 237)
Query Neighborhood Hits	426	Target Neighborhood Hits	316	Shared Neighborhood Hits	284
SwissProt Accessions	P32043, Q8BJW4	Gene names	Hoxc5, Hox-3.4, Hoxc-5
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3.4) (Hox-6.2).

NKX26_MOUSE
θ value	0.0961366 (rank : 214)	NC score	0.415162 (rank : 134)
Query Neighborhood Hits	426	Target Neighborhood Hits	343	Shared Neighborhood Hits	303
SwissProt Accessions	P43688	Gene names	Nkx2-6, Nkx-2.6, Nkx2f
Domain Architecture
Description	Homeobox protein Nkx-2.6 (Homeobox protein NK-2 homolog F).

ZHX2_HUMAN
θ value	0.0961366 (rank : 215)	NC score	0.150325 (rank : 316)
Query Neighborhood Hits	426	Target Neighborhood Hits	347	Shared Neighborhood Hits	170
SwissProt Accessions	Q9Y6X8	Gene names	ZHX2, AFR1, KIAA0854, RAF
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

CUTL1_MOUSE
θ value	0.125558 (rank : 216)	NC score	0.139270 (rank : 322)
Query Neighborhood Hits	426	Target Neighborhood Hits	1620	Shared Neighborhood Hits	232
SwissProt Accessions	P53564, O08994, P70301, Q571L6, Q91ZD2	Gene names	Cutl1, Cux, Cux1, Kiaa4047
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP) (Homeobox protein Cux).

IPF1_HUMAN
θ value	0.125558 (rank : 217)	NC score	0.396821 (rank : 207)
Query Neighborhood Hits	426	Target Neighborhood Hits	330	Shared Neighborhood Hits	290
SwissProt Accessions	P52945, O60594	Gene names	IPF1, PDX1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Pancreas/duodenum homeobox 1) (PDX- 1) (Islet/duodenum homeobox-1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Insulin upstream factor 1) (IUF-1) (Glucose- sensitive factor) (GSF).

IPF1_MOUSE
θ value	0.125558 (rank : 218)	NC score	0.397154 (rank : 206)
Query Neighborhood Hits	426	Target Neighborhood Hits	340	Shared Neighborhood Hits	294
SwissProt Accessions	P52946	Gene names	Ipf1, Pdx1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Islet/duodenum homeobox 1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Pancreas/duodenum homeobox 1).

PRRX1_HUMAN
θ value	0.125558 (rank : 219)	NC score	0.409561 (rank : 160)
Query Neighborhood Hits	426	Target Neighborhood Hits	347	Shared Neighborhood Hits	305
SwissProt Accessions	P54821, O60807	Gene names	PRRX1, PMX1
Domain Architecture
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein PHOX1).

PRRX1_MOUSE
θ value	0.125558 (rank : 220)	NC score	0.409644 (rank : 159)
Query Neighborhood Hits	426	Target Neighborhood Hits	346	Shared Neighborhood Hits	305
SwissProt Accessions	P63013, P43271, Q02810	Gene names	Prrx1, Pmx, Pmx1
Domain Architecture	No domain graphic available
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein mHox) (Homeobox protein K-2).

ZHX2_MOUSE
θ value	0.125558 (rank : 221)	NC score	0.140598 (rank : 321)
Query Neighborhood Hits	426	Target Neighborhood Hits	435	Shared Neighborhood Hits	170
SwissProt Accessions	Q8C0C0	Gene names	Zhx2, Afr1, Raf
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

ZHX3_HUMAN
θ value	0.125558 (rank : 222)	NC score	0.199427 (rank : 298)
Query Neighborhood Hits	426	Target Neighborhood Hits	331	Shared Neighborhood Hits	202
SwissProt Accessions	Q9H4I2, O43145	Gene names	ZHX3, KIAA0395, TIX1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

HXA2_HUMAN
θ value	0.163984 (rank : 223)	NC score	0.408013 (rank : 168)
Query Neighborhood Hits	426	Target Neighborhood Hits	370	Shared Neighborhood Hits	296
SwissProt Accessions	O43364	Gene names	HOXA2
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A2.

HXA2_MOUSE
θ value	0.163984 (rank : 224)	NC score	0.411721 (rank : 146)
Query Neighborhood Hits	426	Target Neighborhood Hits	338	Shared Neighborhood Hits	296
SwissProt Accessions	P31245, Q149U3, Q920T8	Gene names	Hoxa2, Hox-1.11, Hoxa-2
Domain Architecture
Description	Homeobox protein Hox-A2 (Hox-1.11) (Hox1.11).

HXB2_HUMAN
θ value	0.163984 (rank : 225)	NC score	0.417786 (rank : 126)
Query Neighborhood Hits	426	Target Neighborhood Hits	367	Shared Neighborhood Hits	303
SwissProt Accessions	P14652, P10913, P17485	Gene names	HOXB2, HOX2H
Domain Architecture
Description	Homeobox protein Hox-B2 (Hox-2H) (Hox-2.8) (K8).

HXD8_HUMAN
θ value	0.163984 (rank : 226)	NC score	0.392249 (rank : 218)
Query Neighborhood Hits	426	Target Neighborhood Hits	338	Shared Neighborhood Hits	296
SwissProt Accessions	P13378	Gene names	HOXD8, HOX4E
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4).

HXD8_MOUSE
θ value	0.163984 (rank : 227)	NC score	0.389625 (rank : 224)
Query Neighborhood Hits	426	Target Neighborhood Hits	333	Shared Neighborhood Hits	295
SwissProt Accessions	P23463	Gene names	Hoxd8, Hox-4.3, Hoxd-8
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4).

PITX1_HUMAN
θ value	0.163984 (rank : 228)	NC score	0.393290 (rank : 217)
Query Neighborhood Hits	426	Target Neighborhood Hits	353	Shared Neighborhood Hits	310
SwissProt Accessions	P78337, O14677, O60425, Q9BTI5	Gene names	PITX1, BFT, PTX1
Domain Architecture
Description	Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot).

PITX1_MOUSE
θ value	0.163984 (rank : 229)	NC score	0.395149 (rank : 214)
Query Neighborhood Hits	426	Target Neighborhood Hits	362	Shared Neighborhood Hits	313
SwissProt Accessions	P70314, O54742, P70427	Gene names	Pitx1, Bft, Potx, Ptx1
Domain Architecture
Description	Pituitary homeobox 1 (Homeobox protein P-OTX) (Pituitary OTX-related factor) (Hindlimb expressed homeobox protein backfoot) (Ptx1).

RX_HUMAN
θ value	0.163984 (rank : 230)	NC score	0.411757 (rank : 145)
Query Neighborhood Hits	426	Target Neighborhood Hits	423	Shared Neighborhood Hits	313
SwissProt Accessions	Q9Y2V3	Gene names	RAX, RX
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

DLX6_HUMAN
θ value	0.21417 (rank : 231)	NC score	0.423819 (rank : 107)
Query Neighborhood Hits	426	Target Neighborhood Hits	341	Shared Neighborhood Hits	309
SwissProt Accessions	P56179, Q3ZAR6, Q9UPL2	Gene names	DLX6
Domain Architecture
Description	Homeobox protein DLX-6.

HXA5_HUMAN
θ value	0.21417 (rank : 232)	NC score	0.379671 (rank : 247)
Query Neighborhood Hits	426	Target Neighborhood Hits	336	Shared Neighborhood Hits	291
SwissProt Accessions	P20719, O43367, Q96CY6	Gene names	HOXA5, HOX1C
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1C).

HXA5_MOUSE
θ value	0.21417 (rank : 233)	NC score	0.379981 (rank : 246)
Query Neighborhood Hits	426	Target Neighborhood Hits	338	Shared Neighborhood Hits	289
SwissProt Accessions	P09021, Q91VQ5	Gene names	Hoxa5, Hox-1.3, Hoxa-5
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1.3) (M2).

NKX25_HUMAN
θ value	0.21417 (rank : 234)	NC score	0.423927 (rank : 106)
Query Neighborhood Hits	426	Target Neighborhood Hits	338	Shared Neighborhood Hits	307
SwissProt Accessions	P52952	Gene names	NKX2-5, CSX, NKX2.5, NKX2E
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

NKX25_MOUSE
θ value	0.21417 (rank : 235)	NC score	0.415685 (rank : 130)
Query Neighborhood Hits	426	Target Neighborhood Hits	347	Shared Neighborhood Hits	307
SwissProt Accessions	P42582, P97335	Gene names	Nkx2-5, Csx, Nkx-2.5, Nkx2e
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

PF21B_MOUSE
θ value	0.21417 (rank : 236)	NC score	0.026175 (rank : 400)
Query Neighborhood Hits	426	Target Neighborhood Hits	278	Shared Neighborhood Hits	29
SwissProt Accessions	Q8C966	Gene names	Phf21b
Domain Architecture	No domain graphic available
Description	PHD finger protein 21B.

SIP1_MOUSE
θ value	0.21417 (rank : 237)	NC score	0.009395 (rank : 433)
Query Neighborhood Hits	426	Target Neighborhood Hits	870	Shared Neighborhood Hits	42
SwissProt Accessions	Q9R0G7	Gene names	Zfhx1b, Sip1, Zfx1b
Domain Architecture
Description	Zinc finger homeobox protein 1b (Smad-interacting protein 1).

CK024_MOUSE
θ value	0.279714 (rank : 238)	NC score	0.073830 (rank : 346)
Query Neighborhood Hits	426	Target Neighborhood Hits	307	Shared Neighborhood Hits	51
SwissProt Accessions	Q9D8N1, Q8VCP2	Gene names
Domain Architecture	No domain graphic available
Description	Uncharacterized protein C11orf24 homolog precursor.

DLX4_MOUSE
θ value	0.279714 (rank : 239)	NC score	0.410180 (rank : 154)
Query Neighborhood Hits	426	Target Neighborhood Hits	352	Shared Neighborhood Hits	304
SwissProt Accessions	P70436, Q3UM51, Q8R4I3	Gene names	Dlx4, Dlx7
Domain Architecture
Description	Homeobox protein DLX-4 (DLX-7).

FOXGA_HUMAN
θ value	0.279714 (rank : 240)	NC score	0.003877 (rank : 448)
Query Neighborhood Hits	426	Target Neighborhood Hits	132	Shared Neighborhood Hits	5
SwissProt Accessions	P55316	Gene names	FOXG1A, FKHL2
Domain Architecture
Description	Forkhead box protein G1A (Forkhead-related protein FKHL2) (Transcription factor BF-2) (Brain factor 2) (BF2) (HFK2).

HXB4_HUMAN
θ value	0.279714 (rank : 241)	NC score	0.409400 (rank : 161)
Query Neighborhood Hits	426	Target Neighborhood Hits	376	Shared Neighborhood Hits	298
SwissProt Accessions	P17483, Q9NTA0	Gene names	HOXB4, HOX2F
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2F) (Hox-2.6).

HXB4_MOUSE
θ value	0.279714 (rank : 242)	NC score	0.407941 (rank : 169)
Query Neighborhood Hits	426	Target Neighborhood Hits	375	Shared Neighborhood Hits	296
SwissProt Accessions	P10284, Q3UZB4, Q4VBG0	Gene names	Hoxb4, Hox-2.6, Hoxb-4
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2.6).

HXB5_HUMAN
θ value	0.279714 (rank : 243)	NC score	0.370418 (rank : 259)
Query Neighborhood Hits	426	Target Neighborhood Hits	332	Shared Neighborhood Hits	288
SwissProt Accessions	P09067, P09069	Gene names	HOXB5, HOX2A
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2A) (HHO.C10) (HU-1).

HXB5_MOUSE
θ value	0.279714 (rank : 244)	NC score	0.369925 (rank : 261)
Query Neighborhood Hits	426	Target Neighborhood Hits	337	Shared Neighborhood Hits	287
SwissProt Accessions	P09079, Q3ZAY8	Gene names	Hoxb5, Hox-2.1, Hoxb-5
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2.1) (MU-1) (H24.1).

LEUK_HUMAN
θ value	0.279714 (rank : 245)	NC score	0.059380 (rank : 362)
Query Neighborhood Hits	426	Target Neighborhood Hits	213	Shared Neighborhood Hits	39
SwissProt Accessions	P16150	Gene names	SPN, CD43
Domain Architecture	No domain graphic available
Description	Leukosialin precursor (Leukocyte sialoglycoprotein) (Sialophorin) (Galactoglycoprotein) (GALGP) (CD43 antigen).

NCOA6_MOUSE
θ value	0.279714 (rank : 246)	NC score	0.065391 (rank : 357)
Query Neighborhood Hits	426	Target Neighborhood Hits	1076	Shared Neighborhood Hits	84
SwissProt Accessions	Q9JL19, Q9JLT9	Gene names	Ncoa6, Aib3, Prip, Rap250, Trbp
Domain Architecture	No domain graphic available
Description	Nuclear receptor coactivator 6 (Amplified in breast cancer protein 3) (Cancer-amplified transcriptional coactivator ASC-2) (Activating signal cointegrator 2) (ASC-2) (Peroxisome proliferator-activated receptor-interacting protein) (PPAR-interacting protein) (Nuclear receptor-activating protein, 250 kDa) (Nuclear receptor coactivator RAP250) (NRC) (Thyroid hormone receptor-binding protein).

PROP1_MOUSE
θ value	0.279714 (rank : 247)	NC score	0.428617 (rank : 95)
Query Neighborhood Hits	426	Target Neighborhood Hits	361	Shared Neighborhood Hits	310
SwissProt Accessions	P97458	Gene names	Prop1, Prop-1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

TLX1_HUMAN
θ value	0.279714 (rank : 248)	NC score	0.408564 (rank : 166)
Query Neighborhood Hits	426	Target Neighborhood Hits	347	Shared Neighborhood Hits	301
SwissProt Accessions	P31314, O75699, Q9HCA0	Gene names	TLX1, HOX11, TCL3
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (TCL-3 proto-oncogene).

TLX1_MOUSE
θ value	0.279714 (rank : 249)	NC score	0.408198 (rank : 167)
Query Neighborhood Hits	426	Target Neighborhood Hits	347	Shared Neighborhood Hits	298
SwissProt Accessions	P43345	Gene names	Tlx1, Hox11, Tlx-1
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (Homeobox TLX-1).

CHX10_HUMAN
θ value	0.365318 (rank : 250)	NC score	0.378696 (rank : 251)
Query Neighborhood Hits	426	Target Neighborhood Hits	340	Shared Neighborhood Hits	303
SwissProt Accessions	P58304	Gene names	CHX10, VSX2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

CHX10_MOUSE
θ value	0.365318 (rank : 251)	NC score	0.378946 (rank : 250)
Query Neighborhood Hits	426	Target Neighborhood Hits	340	Shared Neighborhood Hits	305
SwissProt Accessions	Q61412	Gene names	Chx10, Vsx2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

DLX2_HUMAN
θ value	0.365318 (rank : 252)	NC score	0.437568 (rank : 76)
Query Neighborhood Hits	426	Target Neighborhood Hits	355	Shared Neighborhood Hits	312
SwissProt Accessions	Q07687	Gene names	DLX2
Domain Architecture
Description	Homeobox protein DLX-2.

DLX2_MOUSE
θ value	0.365318 (rank : 253)	NC score	0.435730 (rank : 78)
Query Neighborhood Hits	426	Target Neighborhood Hits	352	Shared Neighborhood Hits	311
SwissProt Accessions	P40764	Gene names	Dlx2, Tes-1, Tes1
Domain Architecture
Description	Homeobox protein DLX-2 (Homeobox protein TES-1).

HHEX_MOUSE
θ value	0.365318 (rank : 254)	NC score	0.387143 (rank : 229)
Query Neighborhood Hits	426	Target Neighborhood Hits	350	Shared Neighborhood Hits	297
SwissProt Accessions	P43120	Gene names	Hhex, Prhx
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

HIPK2_HUMAN
θ value	0.365318 (rank : 255)	NC score	-0.001292 (rank : 457)
Query Neighborhood Hits	426	Target Neighborhood Hits	845	Shared Neighborhood Hits	16
SwissProt Accessions	Q9H2X6, Q75MR7, Q8WWI4, Q9H2Y1	Gene names	HIPK2
Domain Architecture
Description	Homeodomain-interacting protein kinase 2 (EC 2.7.11.1) (hHIPk2).

HMX2_MOUSE
θ value	0.365318 (rank : 256)	NC score	0.438708 (rank : 74)
Query Neighborhood Hits	426	Target Neighborhood Hits	354	Shared Neighborhood Hits	303
SwissProt Accessions	P43687, Q8R1Q2	Gene names	Hmx2, Nkx-5.2, Nkx5-2
Domain Architecture
Description	Homeobox protein HMX2 (Homeobox protein Nkx-5.2).

HXA4_MOUSE
θ value	0.365318 (rank : 257)	NC score	0.404267 (rank : 181)
Query Neighborhood Hits	426	Target Neighborhood Hits	379	Shared Neighborhood Hits	291
SwissProt Accessions	P06798, Q61684, Q64388, Q8BPE6	Gene names	Hoxa4, Hox-1.4, Hoxa-4
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1.4) (Homeobox protein MH-3).

HXA6_HUMAN
θ value	0.365318 (rank : 258)	NC score	0.354916 (rank : 276)
Query Neighborhood Hits	426	Target Neighborhood Hits	309	Shared Neighborhood Hits	282
SwissProt Accessions	P31267, Q9UPM0	Gene names	HOXA6, HOX1B
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A6 (Hox-1B).

HXA6_MOUSE
θ value	0.365318 (rank : 259)	NC score	0.352064 (rank : 277)
Query Neighborhood Hits	426	Target Neighborhood Hits	304	Shared Neighborhood Hits	280
SwissProt Accessions	P09092, Q9JI98	Gene names	Hoxa6, Hox-1.2, Hoxa-6
Domain Architecture
Description	Homeobox protein Hox-A6 (Hox-1.2) (M5-4).

NKX31_HUMAN
θ value	0.365318 (rank : 260)	NC score	0.439393 (rank : 71)
Query Neighborhood Hits	426	Target Neighborhood Hits	331	Shared Neighborhood Hits	295
SwissProt Accessions	Q99801, O15465, Q9H2P4, Q9H2P5, Q9H2P6, Q9H2P7, Q9HBG0	Gene names	NKX3-1, NKX3.1, NKX3A
Domain Architecture
Description	Homeobox protein Nkx-3.1.

NKX61_HUMAN
θ value	0.365318 (rank : 261)	NC score	0.390544 (rank : 220)
Query Neighborhood Hits	426	Target Neighborhood Hits	431	Shared Neighborhood Hits	310
SwissProt Accessions	P78426	Gene names	NKX6-1, NKX6A
Domain Architecture
Description	Homeobox protein Nkx-6.1.

NKX61_MOUSE
θ value	0.365318 (rank : 262)	NC score	0.390233 (rank : 221)
Query Neighborhood Hits	426	Target Neighborhood Hits	439	Shared Neighborhood Hits	311
SwissProt Accessions	Q99MA9, Q9ERQ7	Gene names	Nkx6-1, Nkx6.1, Nkx6a
Domain Architecture
Description	Homeobox protein Nkx-6.1.

PROP1_HUMAN
θ value	0.365318 (rank : 263)	NC score	0.418779 (rank : 122)
Query Neighborhood Hits	426	Target Neighborhood Hits	354	Shared Neighborhood Hits	310
SwissProt Accessions	O75360	Gene names	PROP1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

PRRXL_MOUSE
θ value	0.365318 (rank : 264)	NC score	0.420396 (rank : 117)
Query Neighborhood Hits	426	Target Neighborhood Hits	350	Shared Neighborhood Hits	309
SwissProt Accessions	Q8BYH0, Q8K3F8	Gene names	Prrxl1, Drg11
Domain Architecture	No domain graphic available
Description	Paired-related homeobox protein-like 1 (Dorsal root ganglion 11) (Homeobox protein DRG11).

ZHX3_MOUSE
θ value	0.365318 (rank : 265)	NC score	0.179214 (rank : 301)
Query Neighborhood Hits	426	Target Neighborhood Hits	321	Shared Neighborhood Hits	196
SwissProt Accessions	Q8C0Q2, Q80U14	Gene names	Zhx3, Kiaa0395, Tix1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

ALX3_HUMAN
θ value	0.47712 (rank : 266)	NC score	0.400974 (rank : 196)
Query Neighborhood Hits	426	Target Neighborhood Hits	380	Shared Neighborhood Hits	311
SwissProt Accessions	O95076, O95075	Gene names	ALX3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

ALX3_MOUSE
θ value	0.47712 (rank : 267)	NC score	0.402433 (rank : 191)
Query Neighborhood Hits	426	Target Neighborhood Hits	386	Shared Neighborhood Hits	311
SwissProt Accessions	O70137	Gene names	Alx3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

ARID2_HUMAN
θ value	0.47712 (rank : 268)	NC score	0.041290 (rank : 382)
Query Neighborhood Hits	426	Target Neighborhood Hits	302	Shared Neighborhood Hits	33
SwissProt Accessions	Q68CP9, Q5EB51, Q645I3, Q6ZRY5, Q7Z3I5, Q86T28, Q96SJ6, Q9HCL5	Gene names	ARID2, KIAA1557
Domain Architecture	No domain graphic available
Description	AT-rich interactive domain-containing protein 2 (ARID domain- containing protein 2) (BRG1-associated factor 200) (BAF200).

CRX_HUMAN
θ value	0.47712 (rank : 269)	NC score	0.426028 (rank : 104)
Query Neighborhood Hits	426	Target Neighborhood Hits	360	Shared Neighborhood Hits	309
SwissProt Accessions	O43186	Gene names	CRX, CORD2
Domain Architecture
Description	Cone-rod homeobox protein.

HHEX_HUMAN
θ value	0.47712 (rank : 270)	NC score	0.386487 (rank : 232)
Query Neighborhood Hits	426	Target Neighborhood Hits	358	Shared Neighborhood Hits	296
SwissProt Accessions	Q03014	Gene names	HHEX, HEX, PRH, PRHX
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

HLXB9_HUMAN
θ value	0.47712 (rank : 271)	NC score	0.426520 (rank : 101)
Query Neighborhood Hits	426	Target Neighborhood Hits	336	Shared Neighborhood Hits	301
SwissProt Accessions	P50219, Q9Y648	Gene names	HLXB9
Domain Architecture
Description	Homeobox protein HB9.

HLXB9_MOUSE
θ value	0.47712 (rank : 272)	NC score	0.426211 (rank : 103)
Query Neighborhood Hits	426	Target Neighborhood Hits	354	Shared Neighborhood Hits	307
SwissProt Accessions	Q9QZW9	Gene names	Hlxb9
Domain Architecture
Description	Homeobox protein HB9.

HXA4_HUMAN
θ value	0.47712 (rank : 273)	NC score	0.408994 (rank : 163)
Query Neighborhood Hits	426	Target Neighborhood Hits	370	Shared Neighborhood Hits	296
SwissProt Accessions	Q00056, O43366	Gene names	HOXA4, HOX1D
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4).

HXD4_HUMAN
θ value	0.47712 (rank : 274)	NC score	0.389821 (rank : 222)
Query Neighborhood Hits	426	Target Neighborhood Hits	337	Shared Neighborhood Hits	290
SwissProt Accessions	P09016, Q96AU0	Gene names	HOXD4, HOX4B
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4B) (Hox-5.1) (HHO.C13).

HXD4_MOUSE
θ value	0.47712 (rank : 275)	NC score	0.386470 (rank : 233)
Query Neighborhood Hits	426	Target Neighborhood Hits	339	Shared Neighborhood Hits	288
SwissProt Accessions	P10628, P97451, Q3UXL6	Gene names	Hoxd4, Hox-4.2, Hoxd-4
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4.2) (Hox-5.1).

DLX1_HUMAN
θ value	0.62314 (rank : 276)	NC score	0.421983 (rank : 113)
Query Neighborhood Hits	426	Target Neighborhood Hits	343	Shared Neighborhood Hits	309
SwissProt Accessions	P56177, Q53ZU4, Q8IYB2	Gene names	DLX1
Domain Architecture
Description	Homeobox protein DLX-1.

DLX1_MOUSE
θ value	0.62314 (rank : 277)	NC score	0.420081 (rank : 120)
Query Neighborhood Hits	426	Target Neighborhood Hits	343	Shared Neighborhood Hits	309
SwissProt Accessions	Q64317	Gene names	Dlx1
Domain Architecture
Description	Homeobox protein DLX-1.

DSG2_MOUSE
θ value	0.62314 (rank : 278)	NC score	0.000324 (rank : 454)
Query Neighborhood Hits	426	Target Neighborhood Hits	174	Shared Neighborhood Hits	5
SwissProt Accessions	O55111, Q8K069, Q8R517	Gene names	Dsg2
Domain Architecture
Description	Desmoglein-2 precursor.

HME1_HUMAN
θ value	0.62314 (rank : 279)	NC score	0.427813 (rank : 97)
Query Neighborhood Hits	426	Target Neighborhood Hits	384	Shared Neighborhood Hits	311
SwissProt Accessions	Q05925	Gene names	EN1
Domain Architecture
Description	Homeobox protein engrailed-1 (Hu-En-1).

HME1_MOUSE
θ value	0.62314 (rank : 280)	NC score	0.427333 (rank : 98)
Query Neighborhood Hits	426	Target Neighborhood Hits	397	Shared Neighborhood Hits	309
SwissProt Accessions	P09065	Gene names	En1, En-1
Domain Architecture
Description	Homeobox protein engrailed-1 (Mo-En-1).

HNF1A_MOUSE
θ value	0.62314 (rank : 281)	NC score	0.055887 (rank : 364)
Query Neighborhood Hits	426	Target Neighborhood Hits	212	Shared Neighborhood Hits	54
SwissProt Accessions	P22361	Gene names	Tcf1, Hnf-1, Hnf-1a, Hnf1a
Domain Architecture
Description	Hepatocyte nuclear factor 1-alpha (HNF-1A) (Liver-specific transcription factor LF-B1) (LFB1).

HXC6_HUMAN
θ value	0.62314 (rank : 282)	NC score	0.357085 (rank : 271)
Query Neighborhood Hits	426	Target Neighborhood Hits	306	Shared Neighborhood Hits	283
SwissProt Accessions	P09630	Gene names	HOXC6, HOX3C
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3C) (HHO.C8) (CP25).

HXC6_MOUSE
θ value	0.62314 (rank : 283)	NC score	0.357085 (rank : 272)
Query Neighborhood Hits	426	Target Neighborhood Hits	306	Shared Neighborhood Hits	283
SwissProt Accessions	P10629, Q61683	Gene names	Hoxc6, Hox-3.3, Hoxc-6
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3.3) (Hox-6.1).

MDC1_MOUSE
θ value	0.62314 (rank : 284)	NC score	0.046697 (rank : 380)
Query Neighborhood Hits	426	Target Neighborhood Hits	998	Shared Neighborhood Hits	65
SwissProt Accessions	Q5PSV9, Q5U4D3, Q6ZQH7	Gene names	Mdc1, Kiaa0170
Domain Architecture	No domain graphic available
Description	Mediator of DNA damage checkpoint protein 1.

NKX12_MOUSE
θ value	0.62314 (rank : 285)	NC score	0.426320 (rank : 102)
Query Neighborhood Hits	426	Target Neighborhood Hits	332	Shared Neighborhood Hits	296
SwissProt Accessions	P42580, Q9JHF2, Q9JKW5, Q9JKW6, Q9JKW9, Q9JKX0, Q9JKX1	Gene names	Nkx1-2, Nkx1.1, Sax1
Domain Architecture
Description	NK1 transcription factor-related protein 2 (Homeobox protein SAX-1) (NKX-1.1).

CART1_HUMAN
θ value	0.813845 (rank : 286)	NC score	0.383671 (rank : 239)
Query Neighborhood Hits	426	Target Neighborhood Hits	348	Shared Neighborhood Hits	304
SwissProt Accessions	Q15699, Q546C8, Q96FH4	Gene names	CART1
Domain Architecture
Description	Cartilage homeoprotein 1 (CART-1).

EPN2_HUMAN
θ value	0.813845 (rank : 287)	NC score	0.013622 (rank : 422)
Query Neighborhood Hits	426	Target Neighborhood Hits	156	Shared Neighborhood Hits	15
SwissProt Accessions	O95208, O95207, Q9H7Z2, Q9UPT7	Gene names	EPN2, KIAA1065
Domain Architecture
Description	Epsin-2 (EPS-15-interacting protein 2).

HME2_HUMAN
θ value	0.813845 (rank : 288)	NC score	0.434250 (rank : 82)
Query Neighborhood Hits	426	Target Neighborhood Hits	355	Shared Neighborhood Hits	309
SwissProt Accessions	P19622	Gene names	EN2
Domain Architecture
Description	Homeobox protein engrailed-2 (Hu-En-2).

HME2_MOUSE
θ value	0.813845 (rank : 289)	NC score	0.432402 (rank : 85)
Query Neighborhood Hits	426	Target Neighborhood Hits	352	Shared Neighborhood Hits	309
SwissProt Accessions	P09066	Gene names	En2, En-2
Domain Architecture
Description	Homeobox protein engrailed-2 (Mo-En-2).

HNF1A_HUMAN
θ value	0.813845 (rank : 290)	NC score	0.050544 (rank : 375)
Query Neighborhood Hits	426	Target Neighborhood Hits	193	Shared Neighborhood Hits	43
SwissProt Accessions	P20823, Q99861	Gene names	TCF1, HNF1A
Domain Architecture
Description	Hepatocyte nuclear factor 1-alpha (HNF-1A) (Liver-specific transcription factor LF-B1) (LFB1) (Transcription factor 1) (TCF-1).

NFAT5_HUMAN
θ value	0.813845 (rank : 291)	NC score	0.024408 (rank : 404)
Query Neighborhood Hits	426	Target Neighborhood Hits	217	Shared Neighborhood Hits	22
SwissProt Accessions	O94916, O95693, Q9UN18	Gene names	NFAT5, KIAA0827, TONEBP
Domain Architecture
Description	Nuclear factor of activated T-cells 5 (T-cell transcription factor NFAT5) (NF-AT5) (Tonicity-responsive enhancer-binding protein) (TonE- binding protein) (TonEBP).

NKX23_HUMAN
θ value	0.813845 (rank : 292)	NC score	0.412222 (rank : 142)
Query Neighborhood Hits	426	Target Neighborhood Hits	346	Shared Neighborhood Hits	311
SwissProt Accessions	Q8TAU0, Q9NYS6	Gene names	NKX2-3, NKX23, NKX2C
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NKX-2.3) (Homeobox protein NK-2 homolog C).

NKX23_MOUSE
θ value	0.813845 (rank : 293)	NC score	0.409076 (rank : 162)
Query Neighborhood Hits	426	Target Neighborhood Hits	340	Shared Neighborhood Hits	311
SwissProt Accessions	P97334, Q9QZ60, Q9WV67	Gene names	Nkx2-3, Nkx-2.3, Nkx2c
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NK-2 homolog C) (Nkx2-C) (Homeobox protein NK-2 homolog 3).

PLAK_HUMAN
θ value	0.813845 (rank : 294)	NC score	0.017777 (rank : 416)
Query Neighborhood Hits	426	Target Neighborhood Hits	53	Shared Neighborhood Hits	3
SwissProt Accessions	P14923, Q9HCX9	Gene names	JUP, DP3
Domain Architecture
Description	Junction plakoglobin (Desmoplakin-3) (Desmoplakin III).

PLAK_MOUSE
θ value	0.813845 (rank : 295)	NC score	0.017404 (rank : 417)
Query Neighborhood Hits	426	Target Neighborhood Hits	55	Shared Neighborhood Hits	3
SwissProt Accessions	Q02257, Q8CGD3	Gene names	Jup
Domain Architecture	No domain graphic available
Description	Junction plakoglobin (Desmoplakin-3) (Desmoplakin III).

ZCPW1_MOUSE
θ value	0.813845 (rank : 296)	NC score	0.024829 (rank : 402)
Query Neighborhood Hits	426	Target Neighborhood Hits	307	Shared Neighborhood Hits	14
SwissProt Accessions	Q6IR42	Gene names	Zcwpw1
Domain Architecture	No domain graphic available
Description	Zinc finger CW-type PWWP domain protein 1 homolog.

ATX7_MOUSE
θ value	1.06291 (rank : 297)	NC score	0.018821 (rank : 413)
Query Neighborhood Hits	426	Target Neighborhood Hits	328	Shared Neighborhood Hits	19
SwissProt Accessions	Q8R4I1, Q8BL17	Gene names	Atxn7, Sca7
Domain Architecture	No domain graphic available
Description	Ataxin-7 (Spinocerebellar ataxia type 7 protein homolog).

DUX1_HUMAN
θ value	1.06291 (rank : 298)	NC score	0.358933 (rank : 269)
Query Neighborhood Hits	426	Target Neighborhood Hits	330	Shared Neighborhood Hits	301
SwissProt Accessions	O43812	Gene names	DUX1
Domain Architecture	No domain graphic available
Description	Double homeobox protein 1.

DUX5_HUMAN
θ value	1.06291 (rank : 299)	NC score	0.356611 (rank : 273)
Query Neighborhood Hits	426	Target Neighborhood Hits	330	Shared Neighborhood Hits	301
SwissProt Accessions	Q96PT3	Gene names	DUX5
Domain Architecture	No domain graphic available
Description	Double homeobox protein 5.

HXB6_HUMAN
θ value	1.06291 (rank : 300)	NC score	0.356410 (rank : 274)
Query Neighborhood Hits	426	Target Neighborhood Hits	307	Shared Neighborhood Hits	281
SwissProt Accessions	P17509, P09068, Q9HB11, Q9UGH2	Gene names	HOXB6, HOX2B
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2).

HXB6_MOUSE
θ value	1.06291 (rank : 301)	NC score	0.356334 (rank : 275)
Query Neighborhood Hits	426	Target Neighborhood Hits	309	Shared Neighborhood Hits	281
SwissProt Accessions	P09023	Gene names	Hoxb6, Hox-2.2, Hoxb-6
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2.2) (Homeobox protein MH-22A).

NCOA2_HUMAN
θ value	1.06291 (rank : 302)	NC score	0.023413 (rank : 406)
Query Neighborhood Hits	426	Target Neighborhood Hits	281	Shared Neighborhood Hits	24
SwissProt Accessions	Q15596	Gene names	NCOA2, TIF2
Domain Architecture
Description	Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional intermediary factor 2).

NCOA2_MOUSE
θ value	1.06291 (rank : 303)	NC score	0.022126 (rank : 408)
Query Neighborhood Hits	426	Target Neighborhood Hits	281	Shared Neighborhood Hits	27
SwissProt Accessions	Q61026, O09001, P97759	Gene names	Ncoa2, Grip1, Tif2
Domain Architecture
Description	Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional intermediary factor 2) (Glucocorticoid receptor-interacting protein 1) (GRIP-1).

SIX5_HUMAN
θ value	1.06291 (rank : 304)	NC score	0.128588 (rank : 328)
Query Neighborhood Hits	426	Target Neighborhood Hits	386	Shared Neighborhood Hits	235
SwissProt Accessions	Q8N196	Gene names	SIX5, DMAHP
Domain Architecture	No domain graphic available
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein).

YETS2_MOUSE
θ value	1.06291 (rank : 305)	NC score	0.044095 (rank : 381)
Query Neighborhood Hits	426	Target Neighborhood Hits	278	Shared Neighborhood Hits	39
SwissProt Accessions	Q3TUF7, Q6PGF8, Q80TI2, Q8CG86	Gene names	Yeats2, Kiaa1197
Domain Architecture	No domain graphic available
Description	YEATS domain-containing protein 2.

ZN750_MOUSE
θ value	1.06291 (rank : 306)	NC score	0.020499 (rank : 411)
Query Neighborhood Hits	426	Target Neighborhood Hits	346	Shared Neighborhood Hits	24
SwissProt Accessions	Q8BH05, Q66JP3, Q8C0L1	Gene names	Znf750
Domain Architecture	No domain graphic available
Description	Protein ZNF750.

ALX4_MOUSE
θ value	1.38821 (rank : 307)	NC score	0.396650 (rank : 208)
Query Neighborhood Hits	426	Target Neighborhood Hits	369	Shared Neighborhood Hits	311
SwissProt Accessions	O35137	Gene names	Alx4
Domain Architecture
Description	Homeobox protein aristaless-like 4 (ALX-4).

DCP1A_MOUSE
θ value	1.38821 (rank : 308)	NC score	0.039424 (rank : 384)
Query Neighborhood Hits	426	Target Neighborhood Hits	103	Shared Neighborhood Hits	16
SwissProt Accessions	Q91YD3, Q6NZE3	Gene names	Dcp1a, Mitc1, Smif
Domain Architecture	No domain graphic available
Description	mRNA decapping enzyme 1A (EC 3.-.-.-) (Transcription factor SMIF) (MAD homolog 4-interacting transcription coactivator 1) (Smad4-interacting transcriptional co-activator).

HXA7_HUMAN
θ value	1.38821 (rank : 309)	NC score	0.366447 (rank : 262)
Query Neighborhood Hits	426	Target Neighborhood Hits	309	Shared Neighborhood Hits	286
SwissProt Accessions	P31268, O43368, O43486, O95655, Q9NSC8, Q9UDM1	Gene names	HOXA7, HOX1A
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1).

NKX24_HUMAN
θ value	1.38821 (rank : 310)	NC score	0.405293 (rank : 179)
Query Neighborhood Hits	426	Target Neighborhood Hits	366	Shared Neighborhood Hits	311
SwissProt Accessions	Q9H2Z4	Gene names	NKX2-4, NKX2D
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

NKX24_MOUSE
θ value	1.38821 (rank : 311)	NC score	0.401214 (rank : 195)
Query Neighborhood Hits	426	Target Neighborhood Hits	356	Shared Neighborhood Hits	308
SwissProt Accessions	Q9EQM3, Q9EQM4	Gene names	Nkx2-4, Nkx2d
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

TITF1_HUMAN
θ value	1.38821 (rank : 312)	NC score	0.386595 (rank : 231)
Query Neighborhood Hits	426	Target Neighborhood Hits	332	Shared Neighborhood Hits	308
SwissProt Accessions	P43699, O14954, O14955, Q9BRJ8	Gene names	TITF1, NKX2-1, NKX2A, TTF1
Domain Architecture
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1) (Homeobox protein NK-2 homolog A).

TITF1_MOUSE
θ value	1.38821 (rank : 313)	NC score	0.387960 (rank : 228)
Query Neighborhood Hits	426	Target Neighborhood Hits	335	Shared Neighborhood Hits	308
SwissProt Accessions	P50220	Gene names	Titf1, Nkx-2.1, Nkx2-1, Ttf1
Domain Architecture	No domain graphic available
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1).

ZEP1_HUMAN
θ value	1.38821 (rank : 314)	NC score	0.007601 (rank : 441)
Query Neighborhood Hits	426	Target Neighborhood Hits	1036	Shared Neighborhood Hits	42
SwissProt Accessions	P15822, Q14122	Gene names	HIVEP1, ZNF40
Domain Architecture	No domain graphic available
Description	Zinc finger protein 40 (Human immunodeficiency virus type I enhancer- binding protein 1) (HIV-EP1) (Major histocompatibility complex-binding protein 1) (MBP-1) (Positive regulatory domain II-binding factor 1) (PRDII-BF1).

ALX4_HUMAN
θ value	1.81305 (rank : 315)	NC score	0.401883 (rank : 193)
Query Neighborhood Hits	426	Target Neighborhood Hits	394	Shared Neighborhood Hits	313
SwissProt Accessions	Q9H161, Q96JN7, Q9H198, Q9HAY9	Gene names	ALX4, KIAA1788
Domain Architecture
Description	Homeobox protein aristaless-like 4.

BARX2_HUMAN
θ value	1.81305 (rank : 316)	NC score	0.406623 (rank : 172)
Query Neighborhood Hits	426	Target Neighborhood Hits	387	Shared Neighborhood Hits	305
SwissProt Accessions	Q9UMQ3, O43518	Gene names	BARX2
Domain Architecture
Description	Homeobox protein BarH-like 2.

DLX4_HUMAN
θ value	1.81305 (rank : 317)	NC score	0.393732 (rank : 216)
Query Neighborhood Hits	426	Target Neighborhood Hits	350	Shared Neighborhood Hits	304
SwissProt Accessions	Q92988, O60480, Q13265, Q6PJK0, Q9HBE0	Gene names	DLX4, BP1, DLX7, DLX8
Domain Architecture	No domain graphic available
Description	Homeobox protein DLX-4 (DLX-7) (DLX-8) (Beta protein 1).

IC1_MOUSE
θ value	1.81305 (rank : 318)	NC score	0.004771 (rank : 444)
Query Neighborhood Hits	426	Target Neighborhood Hits	164	Shared Neighborhood Hits	15
SwissProt Accessions	P97290, O88330, Q99M43, Q9QX09	Gene names	Serping1, C1nh
Domain Architecture
Description	Plasma protease C1 inhibitor precursor (C1 Inh) (C1Inh) (C1 esterase inhibitor) (C1-inhibiting factor).

IRX6_MOUSE
θ value	1.81305 (rank : 319)	NC score	0.140737 (rank : 320)
Query Neighborhood Hits	426	Target Neighborhood Hits	256	Shared Neighborhood Hits	211
SwissProt Accessions	Q9ER75	Gene names	Irx6, Irxb3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

ISL2_HUMAN
θ value	1.81305 (rank : 320)	NC score	0.275914 (rank : 295)
Query Neighborhood Hits	426	Target Neighborhood Hits	435	Shared Neighborhood Hits	296
SwissProt Accessions	Q96A47	Gene names	ISL2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

MEIS3_MOUSE
θ value	1.81305 (rank : 321)	NC score	0.047033 (rank : 379)
Query Neighborhood Hits	426	Target Neighborhood Hits	118	Shared Neighborhood Hits	76
SwissProt Accessions	P97368, Q99L81	Gene names	Meis3, Mrg2
Domain Architecture
Description	Homeobox protein Meis3 (Meis1-related protein 2).

MTR1L_MOUSE
θ value	1.81305 (rank : 322)	NC score	-0.009590 (rank : 471)
Query Neighborhood Hits	426	Target Neighborhood Hits	903	Shared Neighborhood Hits	4
SwissProt Accessions	O88495	Gene names	Gpr50
Domain Architecture
Description	Melatonin-related receptor (G protein-coupled receptor 50) (H9).

NKX32_HUMAN
θ value	1.81305 (rank : 323)	NC score	0.414918 (rank : 135)
Query Neighborhood Hits	426	Target Neighborhood Hits	323	Shared Neighborhood Hits	297
SwissProt Accessions	P78367	Gene names	BAPX1, NKX3B
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

NKX32_MOUSE
θ value	1.81305 (rank : 324)	NC score	0.417943 (rank : 125)
Query Neighborhood Hits	426	Target Neighborhood Hits	326	Shared Neighborhood Hits	297
SwissProt Accessions	P97503	Gene names	Bapx1, Nkx-3.2, Nkx3-2, Nkx3b
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

CART1_MOUSE
θ value	2.36792 (rank : 325)	NC score	0.379193 (rank : 249)
Query Neighborhood Hits	426	Target Neighborhood Hits	344	Shared Neighborhood Hits	303
SwissProt Accessions	Q8C8B0, Q8C370	Gene names	Cart1
Domain Architecture	No domain graphic available
Description	Cartilage homeoprotein 1 (CART-1).

CE290_HUMAN
θ value	2.36792 (rank : 326)	NC score	-0.003619 (rank : 464)
Query Neighborhood Hits	426	Target Neighborhood Hits	1553	Shared Neighborhood Hits	21
SwissProt Accessions	O15078, Q1PSK5, Q66GS8, Q9H2G6, Q9H6Q7, Q9H8I0	Gene names	CEP290, KIAA0373, NPHP6
Domain Architecture	No domain graphic available
Description	Centrosomal protein Cep290 (Nephrocystin-6) (Tumor antigen se2-2).

DOT1L_HUMAN
θ value	2.36792 (rank : 327)	NC score	0.032691 (rank : 388)
Query Neighborhood Hits	426	Target Neighborhood Hits	660	Shared Neighborhood Hits	49
SwissProt Accessions	Q8TEK3, O60379, Q96JL1	Gene names	DOT1L, KIAA1814
Domain Architecture	No domain graphic available
Description	Histone-lysine N-methyltransferase, H3 lysine-79 specific (EC 2.1.1.43) (Histone H3-K79 methyltransferase) (H3-K79-HMTase) (DOT1-like protein).

MUC1_MOUSE
θ value	2.36792 (rank : 328)	NC score	0.054527 (rank : 370)
Query Neighborhood Hits	426	Target Neighborhood Hits	388	Shared Neighborhood Hits	49
SwissProt Accessions	Q02496	Gene names	Muc1, Muc-1
Domain Architecture
Description	Mucin-1 precursor (Polymorphic epithelial mucin) (PEMT) (Episialin).

MUCDL_MOUSE
θ value	2.36792 (rank : 329)	NC score	0.028223 (rank : 396)
Query Neighborhood Hits	426	Target Neighborhood Hits	461	Shared Neighborhood Hits	44
SwissProt Accessions	Q8VHF2, Q8CEJ3, Q9D8I9	Gene names	Mucdhl
Domain Architecture
Description	Mucin and cadherin-like protein precursor (Mu-protocadherin).

NCOA6_HUMAN
θ value	2.36792 (rank : 330)	NC score	0.063163 (rank : 360)
Query Neighborhood Hits	426	Target Neighborhood Hits	1202	Shared Neighborhood Hits	89
SwissProt Accessions	Q14686, Q9NTZ9, Q9UH74, Q9UK86	Gene names	NCOA6, AIB3, KIAA0181, RAP250, TRBP
Domain Architecture	No domain graphic available
Description	Nuclear receptor coactivator 6 (Amplified in breast cancer protein 3) (Cancer-amplified transcriptional coactivator ASC-2) (Activating signal cointegrator 2) (ASC-2) (Peroxisome proliferator-activated receptor-interacting protein) (PPAR-interacting protein) (PRIP) (Nuclear receptor-activating protein, 250 kDa) (Nuclear receptor coactivator RAP250) (NRC RAP250) (Thyroid hormone receptor-binding protein).

NKX22_HUMAN
θ value	2.36792 (rank : 331)	NC score	0.414261 (rank : 137)
Query Neighborhood Hits	426	Target Neighborhood Hits	342	Shared Neighborhood Hits	308
SwissProt Accessions	O95096	Gene names	NKX2-2, NKX2.2, NKX2B
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

NKX22_MOUSE
θ value	2.36792 (rank : 332)	NC score	0.416321 (rank : 129)
Query Neighborhood Hits	426	Target Neighborhood Hits	336	Shared Neighborhood Hits	308
SwissProt Accessions	P42586	Gene names	Nkx2-2, Nkx-2.2, Nkx2b
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

OTP_MOUSE
θ value	2.36792 (rank : 333)	NC score	0.408858 (rank : 164)
Query Neighborhood Hits	426	Target Neighborhood Hits	387	Shared Neighborhood Hits	311
SwissProt Accessions	O09113	Gene names	Otp
Domain Architecture
Description	Homeobox protein orthopedia.

PAPOA_HUMAN
θ value	2.36792 (rank : 334)	NC score	0.021300 (rank : 410)
Query Neighborhood Hits	426	Target Neighborhood Hits	75	Shared Neighborhood Hits	14
SwissProt Accessions	P51003, Q86SX4, Q86TV0, Q8IYF5, Q9BVU2	Gene names	PAPOLA, PAP
Domain Architecture	No domain graphic available
Description	Poly(A) polymerase alpha (EC 2.7.7.19) (PAP) (Polynucleotide adenylyltransferase alpha).

PHX2A_HUMAN
θ value	2.36792 (rank : 335)	NC score	0.379655 (rank : 248)
Query Neighborhood Hits	426	Target Neighborhood Hits	345	Shared Neighborhood Hits	294
SwissProt Accessions	O14813, Q8IVZ2	Gene names	PHOX2A, ARIX, PMX2A
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (Aristaless homeobox protein homolog) (ARIX1 homeodomain protein).

PHX2A_MOUSE
θ value	2.36792 (rank : 336)	NC score	0.380343 (rank : 245)
Query Neighborhood Hits	426	Target Neighborhood Hits	338	Shared Neighborhood Hits	295
SwissProt Accessions	Q62066	Gene names	Phox2a, Arix, Phox2, Pmx2, Pmx2a
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (PHOX2A homeodomain protein) (Aristaless homeobox protein homolog).

PHX2B_HUMAN
θ value	2.36792 (rank : 337)	NC score	0.375074 (rank : 256)
Query Neighborhood Hits	426	Target Neighborhood Hits	407	Shared Neighborhood Hits	302
SwissProt Accessions	Q99453, Q6PJD9	Gene names	PHOX2B, PMX2B
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

PHX2B_MOUSE
θ value	2.36792 (rank : 338)	NC score	0.375074 (rank : 257)
Query Neighborhood Hits	426	Target Neighborhood Hits	407	Shared Neighborhood Hits	302
SwissProt Accessions	O35690	Gene names	Phox2b, Pmx2b
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

SP3_HUMAN
θ value	2.36792 (rank : 339)	NC score	-0.002526 (rank : 461)
Query Neighborhood Hits	426	Target Neighborhood Hits	737	Shared Neighborhood Hits	16
SwissProt Accessions	Q02447, Q8TD56, Q9BQR1	Gene names	SP3
Domain Architecture
Description	Transcription factor Sp3 (SPR-2).

STK10_HUMAN
θ value	2.36792 (rank : 340)	NC score	-0.009112 (rank : 470)
Query Neighborhood Hits	426	Target Neighborhood Hits	1921	Shared Neighborhood Hits	37
SwissProt Accessions	O94804, Q9UIW4	Gene names	STK10, LOK
Domain Architecture
Description	Serine/threonine-protein kinase 10 (EC 2.7.11.1) (Lymphocyte-oriented kinase).

T240L_HUMAN
θ value	2.36792 (rank : 341)	NC score	0.011762 (rank : 424)
Query Neighborhood Hits	426	Target Neighborhood Hits	132	Shared Neighborhood Hits	15
SwissProt Accessions	Q71F56, Q68DN4, Q9H8C0, Q9NSY9, Q9UFD8, Q9UPX5	Gene names	THRAP2, KIAA1025, PROSIT240, TRAP240L
Domain Architecture	No domain graphic available
Description	Thyroid hormone receptor-associated protein 2 (Thyroid hormone receptor-associated protein complex 240 kDa component-like).

ZBT20_HUMAN
θ value	2.36792 (rank : 342)	NC score	-0.005131 (rank : 465)
Query Neighborhood Hits	426	Target Neighborhood Hits	835	Shared Neighborhood Hits	23
SwissProt Accessions	Q9HC78	Gene names	ZBTB20, DPZF, ZNF288
Domain Architecture
Description	Zinc finger and BTB domain-containing protein 20 (Zinc finger protein 288) (Dendritic-derived BTB/POZ zinc finger protein).

DCP1A_HUMAN
θ value	3.0926 (rank : 343)	NC score	0.023601 (rank : 405)
Query Neighborhood Hits	426	Target Neighborhood Hits	228	Shared Neighborhood Hits	25
SwissProt Accessions	Q9NPI6	Gene names	DCP1A, SMIF
Domain Architecture	No domain graphic available
Description	mRNA decapping enzyme 1A (EC 3.-.-.-) (Transcription factor SMIF) (Smad4-interacting transcriptional co-activator).

DUX3_HUMAN
θ value	3.0926 (rank : 344)	NC score	0.326650 (rank : 282)
Query Neighborhood Hits	426	Target Neighborhood Hits	312	Shared Neighborhood Hits	284
SwissProt Accessions	Q96PT4, Q9UND2	Gene names	DUX3
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 3.

HIPK2_MOUSE
θ value	3.0926 (rank : 345)	NC score	-0.002350 (rank : 459)
Query Neighborhood Hits	426	Target Neighborhood Hits	871	Shared Neighborhood Hits	17
SwissProt Accessions	Q9QZR5, O88905, Q99P45, Q99P46, Q9D2E6, Q9D474, Q9EQL2, Q9QZR4	Gene names	Hipk2, Nbak1, Stank
Domain Architecture
Description	Homeodomain-interacting protein kinase 2 (EC 2.7.11.1) (Nuclear body- associated kinase 1) (Sialophorin tail-associated nuclear serine/threonine-protein kinase).

HLX1_HUMAN
θ value	3.0926 (rank : 346)	NC score	0.383764 (rank : 238)
Query Neighborhood Hits	426	Target Neighborhood Hits	370	Shared Neighborhood Hits	297
SwissProt Accessions	Q14774, Q15988	Gene names	HLX1
Domain Architecture
Description	Homeobox protein HLX1 (Homeobox protein HB24).

HLX1_MOUSE
θ value	3.0926 (rank : 347)	NC score	0.385533 (rank : 235)
Query Neighborhood Hits	426	Target Neighborhood Hits	362	Shared Neighborhood Hits	300
SwissProt Accessions	Q61670	Gene names	Hlx1, Hlx
Domain Architecture
Description	Homeobox protein HLX1.

IRX4_HUMAN
θ value	3.0926 (rank : 348)	NC score	0.134807 (rank : 325)
Query Neighborhood Hits	426	Target Neighborhood Hits	276	Shared Neighborhood Hits	230
SwissProt Accessions	P78413, Q9UHR2	Gene names	IRX4, IRXA3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

IRX4_MOUSE
θ value	3.0926 (rank : 349)	NC score	0.135954 (rank : 324)
Query Neighborhood Hits	426	Target Neighborhood Hits	286	Shared Neighborhood Hits	230
SwissProt Accessions	Q9QY61	Gene names	Irx4, Irxa3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

ISL1_HUMAN
θ value	3.0926 (rank : 350)	NC score	0.280718 (rank : 293)
Query Neighborhood Hits	426	Target Neighborhood Hits	421	Shared Neighborhood Hits	293
SwissProt Accessions	P61371, P20663, P47894	Gene names	ISL1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

ISL1_MOUSE
θ value	3.0926 (rank : 351)	NC score	0.280718 (rank : 294)
Query Neighborhood Hits	426	Target Neighborhood Hits	421	Shared Neighborhood Hits	293
SwissProt Accessions	P61372, P20663, P47894, Q812D8	Gene names	Isl1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

ISL2_MOUSE
θ value	3.0926 (rank : 352)	NC score	0.275785 (rank : 296)
Query Neighborhood Hits	426	Target Neighborhood Hits	426	Shared Neighborhood Hits	292
SwissProt Accessions	Q9CXV0	Gene names	Isl2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

K0460_MOUSE
θ value	3.0926 (rank : 353)	NC score	0.032390 (rank : 389)
Query Neighborhood Hits	426	Target Neighborhood Hits	374	Shared Neighborhood Hits	39
SwissProt Accessions	Q6NXI6, Q3U3L8, Q6ZQA7	Gene names	Kiaa0460
Domain Architecture	No domain graphic available
Description	Protein KIAA0460.

MAP4_MOUSE
θ value	3.0926 (rank : 354)	NC score	0.028314 (rank : 395)
Query Neighborhood Hits	426	Target Neighborhood Hits	409	Shared Neighborhood Hits	32
SwissProt Accessions	P27546	Gene names	Map4, Mtap4
Domain Architecture
Description	Microtubule-associated protein 4 (MAP 4).

MRCKB_HUMAN
θ value	3.0926 (rank : 355)	NC score	-0.012681 (rank : 472)
Query Neighborhood Hits	426	Target Neighborhood Hits	2239	Shared Neighborhood Hits	27
SwissProt Accessions	Q9Y5S2, Q2L7A5, Q86TJ1, Q9ULU5	Gene names	CDC42BPB, KIAA1124
Domain Architecture	No domain graphic available
Description	Serine/threonine-protein kinase MRCK beta (EC 2.7.11.1) (CDC42-binding protein kinase beta) (Myotonic dystrophy kinase-related CDC42-binding kinase beta) (Myotonic dystrophy protein kinase-like beta) (MRCK beta) (DMPK-like beta).

ONEC2_HUMAN
θ value	3.0926 (rank : 356)	NC score	0.132017 (rank : 327)
Query Neighborhood Hits	426	Target Neighborhood Hits	115	Shared Neighborhood Hits	82
SwissProt Accessions	O95948	Gene names	ONECUT2
Domain Architecture
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

ONEC2_MOUSE
θ value	3.0926 (rank : 357)	NC score	0.128033 (rank : 329)
Query Neighborhood Hits	426	Target Neighborhood Hits	123	Shared Neighborhood Hits	80
SwissProt Accessions	Q6XBJ3	Gene names	Onecut2, Oc2
Domain Architecture	No domain graphic available
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

PEPP1_HUMAN
θ value	3.0926 (rank : 358)	NC score	0.418098 (rank : 124)
Query Neighborhood Hits	426	Target Neighborhood Hits	338	Shared Neighborhood Hits	304
SwissProt Accessions	Q8NHV9, O95030, Q3SYE0	Gene names	PEPP1, OTEX
Domain Architecture
Description	Paired-like homeobox protein PEPP-1 (Ovary-, testis- and epididymis- expressed gene protein).

SHOX2_HUMAN
θ value	3.0926 (rank : 359)	NC score	0.397194 (rank : 205)
Query Neighborhood Hits	426	Target Neighborhood Hits	353	Shared Neighborhood Hits	304
SwissProt Accessions	O60902, O60465, O60467, O60903	Gene names	SHOX2, OG12X, SHOT
Domain Architecture
Description	Short stature homeobox protein 2 (Paired-related homeobox protein SHOT) (Homeobox protein Og12X).

SHOX2_MOUSE
θ value	3.0926 (rank : 360)	NC score	0.395155 (rank : 213)
Query Neighborhood Hits	426	Target Neighborhood Hits	348	Shared Neighborhood Hits	305
SwissProt Accessions	P70390, P70369	Gene names	Shox2, Og12x, Prx3
Domain Architecture
Description	Short stature homeobox protein 2 (Homeobox protein Og12X) (OG-12) (Paired family homeodomain protein Prx3).

SHOX_HUMAN
θ value	3.0926 (rank : 361)	NC score	0.394014 (rank : 215)
Query Neighborhood Hits	426	Target Neighborhood Hits	363	Shared Neighborhood Hits	305
SwissProt Accessions	O15266, O00412, O00413, O15267	Gene names	SHOX, PHOG
Domain Architecture
Description	Short stature homeobox protein (Short stature homeobox-containing protein) (Pseudoautosomal homeobox-containing osteogenic protein).

SP4_HUMAN
θ value	3.0926 (rank : 362)	NC score	-0.003114 (rank : 462)
Query Neighborhood Hits	426	Target Neighborhood Hits	749	Shared Neighborhood Hits	20
SwissProt Accessions	Q02446, O60402	Gene names	SP4
Domain Architecture
Description	Transcription factor Sp4 (SPR-1).

SP4_MOUSE
θ value	3.0926 (rank : 363)	NC score	-0.002430 (rank : 460)
Query Neighborhood Hits	426	Target Neighborhood Hits	759	Shared Neighborhood Hits	27
SwissProt Accessions	Q62445	Gene names	Sp4
Domain Architecture
Description	Transcription factor Sp4.

TMPS9_HUMAN
θ value	3.0926 (rank : 364)	NC score	-0.003234 (rank : 463)
Query Neighborhood Hits	426	Target Neighborhood Hits	276	Shared Neighborhood Hits	9
SwissProt Accessions	Q7Z410, Q6ZND6, Q7Z411	Gene names	TMPRSS9
Domain Architecture	No domain graphic available
Description	Transmembrane protease, serine 9 (EC 3.4.21.-) (Polyserase-1) (Polyserase-I) (Polyserine protease 1) [Contains: Serase-1; Serase-2; Serase-3].

YETS2_HUMAN
θ value	3.0926 (rank : 365)	NC score	0.029424 (rank : 392)
Query Neighborhood Hits	426	Target Neighborhood Hits	212	Shared Neighborhood Hits	29
SwissProt Accessions	Q9ULM3, Q641P6, Q9NW96	Gene names	YEATS2, KIAA1197
Domain Architecture	No domain graphic available
Description	YEATS domain-containing protein 2.

GRIN1_HUMAN
θ value	4.03905 (rank : 366)	NC score	0.024631 (rank : 403)
Query Neighborhood Hits	426	Target Neighborhood Hits	681	Shared Neighborhood Hits	44
SwissProt Accessions	Q7Z2K8, Q8ND74, Q96PZ4	Gene names	GPRIN1, KIAA1893
Domain Architecture	No domain graphic available
Description	G protein-regulated inducer of neurite outgrowth 1 (GRIN1).

GRIN1_MOUSE
θ value	4.03905 (rank : 367)	NC score	0.029068 (rank : 393)
Query Neighborhood Hits	426	Target Neighborhood Hits	337	Shared Neighborhood Hits	31
SwissProt Accessions	Q3UNH4, Q6PGF9, Q9QZY2	Gene names	Gprin1
Domain Architecture	No domain graphic available
Description	G protein-regulated inducer of neurite outgrowth 1 (GRIN1).

IRX1_MOUSE
θ value	4.03905 (rank : 368)	NC score	0.101164 (rank : 342)
Query Neighborhood Hits	426	Target Neighborhood Hits	269	Shared Neighborhood Hits	199
SwissProt Accessions	P81068, O55120, Q9JLL6	Gene names	Irx1, Irxa1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

IRX6_HUMAN
θ value	4.03905 (rank : 369)	NC score	0.137380 (rank : 323)
Query Neighborhood Hits	426	Target Neighborhood Hits	262	Shared Neighborhood Hits	213
SwissProt Accessions	P78412, Q7Z2K0	Gene names	IRX6, IRX7, IRXB3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

SIX4_MOUSE
θ value	4.03905 (rank : 370)	NC score	0.152127 (rank : 315)
Query Neighborhood Hits	426	Target Neighborhood Hits	341	Shared Neighborhood Hits	268
SwissProt Accessions	Q61321, Q61322, Q61323	Gene names	Six4, Arec3
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4) (Skeletal muscle-specific ARE-binding protein AREC3).

SIX5_MOUSE
θ value	4.03905 (rank : 371)	NC score	0.108291 (rank : 338)
Query Neighborhood Hits	426	Target Neighborhood Hits	354	Shared Neighborhood Hits	211
SwissProt Accessions	P70178	Gene names	Six5, Dmahp
Domain Architecture
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein homolog).

SP3_MOUSE
θ value	4.03905 (rank : 372)	NC score	-0.002310 (rank : 458)
Query Neighborhood Hits	426	Target Neighborhood Hits	731	Shared Neighborhood Hits	16
SwissProt Accessions	O70494, Q68FF2, Q8CF64, Q8K378	Gene names	Sp3
Domain Architecture	No domain graphic available
Description	Transcription factor Sp3.

TPSNR_HUMAN
θ value	4.03905 (rank : 373)	NC score	0.004656 (rank : 445)
Query Neighborhood Hits	426	Target Neighborhood Hits	330	Shared Neighborhood Hits	5
SwissProt Accessions	Q9BX59, Q9NWB8	Gene names	TAPBPL
Domain Architecture	No domain graphic available
Description	Tapasin-related protein precursor (TAPASIN-R) (Tapasin-like) (TAP- binding protein-related protein) (TAPBP-R) (TAP-binding protein-like).

WNK1_MOUSE
θ value	4.03905 (rank : 374)	NC score	-0.000661 (rank : 455)
Query Neighborhood Hits	426	Target Neighborhood Hits	1179	Shared Neighborhood Hits	59
SwissProt Accessions	P83741	Gene names	Wnk1, Prkwnk1
Domain Architecture
Description	Serine/threonine-protein kinase WNK1 (EC 2.7.11.1) (Protein kinase with no lysine 1) (Protein kinase, lysine-deficient 1).

BARX2_MOUSE
θ value	5.27518 (rank : 375)	NC score	0.405530 (rank : 177)
Query Neighborhood Hits	426	Target Neighborhood Hits	335	Shared Neighborhood Hits	302
SwissProt Accessions	O08686	Gene names	Barx2
Domain Architecture
Description	Homeobox protein BarH-like 2.

CAMKV_HUMAN
θ value	5.27518 (rank : 376)	NC score	-0.006756 (rank : 468)
Query Neighborhood Hits	426	Target Neighborhood Hits	1084	Shared Neighborhood Hits	37
SwissProt Accessions	Q8NCB2, Q6FIB8, Q8NBS8, Q8NC85, Q8NDU4, Q8WTT8, Q9BQC9, Q9H0Q5	Gene names	CAMKV
Domain Architecture	No domain graphic available
Description	CaM kinase-like vesicle-associated protein.

CDC5L_MOUSE
θ value	5.27518 (rank : 377)	NC score	0.010540 (rank : 429)
Query Neighborhood Hits	426	Target Neighborhood Hits	205	Shared Neighborhood Hits	11
SwissProt Accessions	Q6A068, Q8K1J9	Gene names	Cdc5l, Kiaa0432
Domain Architecture	No domain graphic available
Description	Cell division cycle 5-related protein (Cdc5-like protein).

DUX4_HUMAN
θ value	5.27518 (rank : 378)	NC score	0.373005 (rank : 258)
Query Neighborhood Hits	426	Target Neighborhood Hits	403	Shared Neighborhood Hits	305
SwissProt Accessions	Q9UBX2	Gene names	DUX4, DUX10
Domain Architecture	No domain graphic available
Description	Double homeobox protein 4 (Double homeobox protein 10) (Double homeobox protein 4/10).

ELF1_HUMAN
θ value	5.27518 (rank : 379)	NC score	0.003977 (rank : 447)
Query Neighborhood Hits	426	Target Neighborhood Hits	104	Shared Neighborhood Hits	10
SwissProt Accessions	P32519, Q9UDE1	Gene names	ELF1
Domain Architecture	No domain graphic available
Description	ETS-related transcription factor Elf-1 (E74-like factor 1).

EP300_HUMAN
θ value	5.27518 (rank : 380)	NC score	0.028891 (rank : 394)
Query Neighborhood Hits	426	Target Neighborhood Hits	821	Shared Neighborhood Hits	64
SwissProt Accessions	Q09472	Gene names	EP300, P300
Domain Architecture
Description	E1A-associated protein p300 (EC 2.3.1.48).

HNF6_HUMAN
θ value	5.27518 (rank : 381)	NC score	0.143178 (rank : 319)
Query Neighborhood Hits	426	Target Neighborhood Hits	127	Shared Neighborhood Hits	81
SwissProt Accessions	Q9UBC0, Q99744, Q9UMR6	Gene names	ONECUT1, HNF6, HNF6A
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

HNF6_MOUSE
θ value	5.27518 (rank : 382)	NC score	0.143982 (rank : 318)
Query Neighborhood Hits	426	Target Neighborhood Hits	124	Shared Neighborhood Hits	83
SwissProt Accessions	O08755	Gene names	Onecut1, Hnf6, Hnf6a
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

IRX1_HUMAN
θ value	5.27518 (rank : 383)	NC score	0.101224 (rank : 341)
Query Neighborhood Hits	426	Target Neighborhood Hits	285	Shared Neighborhood Hits	199
SwissProt Accessions	P78414, Q7Z2F8, Q8N312	Gene names	IRX1, IRXA1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

MLL3_HUMAN
θ value	5.27518 (rank : 384)	NC score	0.013760 (rank : 421)
Query Neighborhood Hits	426	Target Neighborhood Hits	1644	Shared Neighborhood Hits	69
SwissProt Accessions	Q8NEZ4, Q8NC02, Q8NDF6, Q9H9P4, Q9NR13, Q9P222, Q9UDR7	Gene names	MLL3, HALR, KIAA1506
Domain Architecture
Description	Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog (EC 2.1.1.43) (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (Homologous to ALR protein).

MPDZ_MOUSE
θ value	5.27518 (rank : 385)	NC score	0.000946 (rank : 453)
Query Neighborhood Hits	426	Target Neighborhood Hits	298	Shared Neighborhood Hits	8
SwissProt Accessions	Q8VBX6, O08783, Q6P7U4, Q80ZY8, Q8BKJ1, Q8C0H8, Q8VBV5, Q8VBY0, Q9Z1K3	Gene names	Mpdz, Mupp1
Domain Architecture	No domain graphic available
Description	Multiple PDZ domain protein (Multi PDZ domain protein 1) (Multi-PDZ domain protein 1).

NFH_MOUSE
θ value	5.27518 (rank : 386)	NC score	0.008809 (rank : 437)
Query Neighborhood Hits	426	Target Neighborhood Hits	2247	Shared Neighborhood Hits	93
SwissProt Accessions	P19246, Q5SVF6, Q61959	Gene names	Nefh, Nfh
Domain Architecture
Description	Neurofilament triplet H protein (200 kDa neurofilament protein) (Neurofilament heavy polypeptide) (NF-H).

NUPL_MOUSE
θ value	5.27518 (rank : 387)	NC score	0.009297 (rank : 434)
Query Neighborhood Hits	426	Target Neighborhood Hits	113	Shared Neighborhood Hits	12
SwissProt Accessions	Q8K2K6, O70448, Q8BQL5, Q8CDK9	Gene names	Hrb, Rip
Domain Architecture
Description	Nucleoporin-like protein RIP (HIV-1 Rev-binding protein homolog).

OTX2_HUMAN
θ value	5.27518 (rank : 388)	NC score	0.386267 (rank : 234)
Query Neighborhood Hits	426	Target Neighborhood Hits	341	Shared Neighborhood Hits	299
SwissProt Accessions	P32243, Q6GTV3, Q9HAW3, Q9P2R1	Gene names	OTX2
Domain Architecture
Description	Homeobox protein OTX2.

OTX2_MOUSE
θ value	5.27518 (rank : 389)	NC score	0.386792 (rank : 230)
Query Neighborhood Hits	426	Target Neighborhood Hits	345	Shared Neighborhood Hits	302
SwissProt Accessions	P80206	Gene names	Otx2, Otx-2
Domain Architecture
Description	Homeobox protein OTX2.

PDZD2_HUMAN
θ value	5.27518 (rank : 390)	NC score	0.015011 (rank : 419)
Query Neighborhood Hits	426	Target Neighborhood Hits	772	Shared Neighborhood Hits	41
SwissProt Accessions	O15018, Q9BXD4	Gene names	PDZD2, AIPC, KIAA0300, PDZK3
Domain Architecture	No domain graphic available
Description	PDZ domain-containing protein 2 (PDZ domain-containing protein 3) (Activated in prostate cancer protein).

PKNX1_MOUSE
θ value	5.27518 (rank : 391)	NC score	0.028153 (rank : 397)
Query Neighborhood Hits	426	Target Neighborhood Hits	103	Shared Neighborhood Hits	61
SwissProt Accessions	O70477	Gene names	Pknox1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1).

POLS_MOUSE
θ value	5.27518 (rank : 392)	NC score	0.008480 (rank : 438)
Query Neighborhood Hits	426	Target Neighborhood Hits	91	Shared Neighborhood Hits	9
SwissProt Accessions	Q6PB75	Gene names	Pols
Domain Architecture	No domain graphic available
Description	DNA polymerase sigma (EC 2.7.7.7).

R3HD2_MOUSE
θ value	5.27518 (rank : 393)	NC score	0.037024 (rank : 385)
Query Neighborhood Hits	426	Target Neighborhood Hits	397	Shared Neighborhood Hits	34
SwissProt Accessions	Q80TM6, Q80YB1, Q8BLS5, Q9CW50	Gene names	R3hdm2, Kiaa1002
Domain Architecture
Description	R3H domain-containing protein 2.

ZBT24_MOUSE
θ value	5.27518 (rank : 394)	NC score	-0.006556 (rank : 467)
Query Neighborhood Hits	426	Target Neighborhood Hits	894	Shared Neighborhood Hits	19
SwissProt Accessions	Q80X44, Q3UIB7, Q7TPC4, Q8CJC9	Gene names	Zbtb24, Bif1, Bsg1, Znf450
Domain Architecture	No domain graphic available
Description	Zinc finger and BTB domain-containing protein 24 (Zinc finger protein 450) (Bone morphogenetic protein-induced factor 1) (Brain-specific protein 1).

ARHGA_HUMAN
θ value	6.88961 (rank : 395)	NC score	0.001242 (rank : 452)
Query Neighborhood Hits	426	Target Neighborhood Hits	187	Shared Neighborhood Hits	6
SwissProt Accessions	O15013, O14665, Q68D55, Q8IWD9, Q8IY77	Gene names	ARHGEF10, KIAA0294
Domain Architecture
Description	Rho guanine nucleotide exchange factor 10.

ARRD1_MOUSE
θ value	6.88961 (rank : 396)	NC score	0.008375 (rank : 440)
Query Neighborhood Hits	426	Target Neighborhood Hits	90	Shared Neighborhood Hits	8
SwissProt Accessions	Q99KN1, Q3TDT6, Q8VEG7	Gene names	Arrdc1
Domain Architecture	No domain graphic available
Description	Arrestin domain-containing protein 1.

CDC5L_HUMAN
θ value	6.88961 (rank : 397)	NC score	0.008403 (rank : 439)
Query Neighborhood Hits	426	Target Neighborhood Hits	197	Shared Neighborhood Hits	7
SwissProt Accessions	Q99459, Q76N46, Q99974	Gene names	CDC5L, KIAA0432, PCDC5RP
Domain Architecture	No domain graphic available
Description	Cell division cycle 5-like protein (Cdc5-like protein) (Pombe cdc5- related protein).

CO002_HUMAN
θ value	6.88961 (rank : 398)	NC score	0.031423 (rank : 390)
Query Neighborhood Hits	426	Target Neighborhood Hits	387	Shared Neighborhood Hits	42
SwissProt Accessions	Q9NZP6	Gene names	C15orf2
Domain Architecture	No domain graphic available
Description	Protein C15orf2.

CRTC1_MOUSE
θ value	6.88961 (rank : 399)	NC score	0.019353 (rank : 412)
Query Neighborhood Hits	426	Target Neighborhood Hits	230	Shared Neighborhood Hits	28
SwissProt Accessions	Q68ED7, Q6ZQ85	Gene names	Crtc1, Kiaa0616, Mect1
Domain Architecture	No domain graphic available
Description	CREB-regulated transcription coactivator 1 (Mucoepidermoid carcinoma translocated protein 1 homolog).

ECM2_HUMAN
θ value	6.88961 (rank : 400)	NC score	-0.005184 (rank : 466)
Query Neighborhood Hits	426	Target Neighborhood Hits	402	Shared Neighborhood Hits	2
SwissProt Accessions	O94769	Gene names	ECM2
Domain Architecture
Description	Extracellular matrix protein 2 precursor (Matrix glycoprotein SC1/ECM2).

EXOSX_MOUSE
θ value	6.88961 (rank : 401)	NC score	0.010772 (rank : 427)
Query Neighborhood Hits	426	Target Neighborhood Hits	36	Shared Neighborhood Hits	4
SwissProt Accessions	P56960, Q9QYS8, Q9R0B1	Gene names	Exosc10, Pmscl2
Domain Architecture
Description	Exosome component 10 (Polymyositis/scleroderma autoantigen 2 homolog) (Autoantigen PM/Scl 2 homolog).

HEMGN_MOUSE
θ value	6.88961 (rank : 402)	NC score	0.010612 (rank : 428)
Query Neighborhood Hits	426	Target Neighborhood Hits	81	Shared Neighborhood Hits	7
SwissProt Accessions	Q9ERZ0, Q3TAE6, Q80YT2, Q8CF29	Gene names	Hemgn, Ndr
Domain Architecture	No domain graphic available
Description	Hemogen (Hemopoietic gene protein) (Negative differentiation regulator protein) (mNDR).

NPAS4_HUMAN
θ value	6.88961 (rank : 403)	NC score	0.007228 (rank : 443)
Query Neighborhood Hits	426	Target Neighborhood Hits	214	Shared Neighborhood Hits	17
SwissProt Accessions	Q8IUM7, Q8N8S5, Q8N9Q9	Gene names	NPAS4, NXF
Domain Architecture	No domain graphic available
Description	Neuronal PAS domain-containing protein 4 (Neuronal PAS4) (HLH-PAS transcription factor NXF).

NRBF2_HUMAN
θ value	6.88961 (rank : 404)	NC score	0.009219 (rank : 435)
Query Neighborhood Hits	426	Target Neighborhood Hits	122	Shared Neighborhood Hits	4
SwissProt Accessions	Q96F24, Q86UR2, Q96NP6, Q9H0S9, Q9H2I2	Gene names	NRBF2, COPR
Domain Architecture	No domain graphic available
Description	Nuclear receptor-binding factor 2 (NRBF-2) (Comodulator of PPAR and RXR).

PEPP2_HUMAN
θ value	6.88961 (rank : 405)	NC score	0.360134 (rank : 267)
Query Neighborhood Hits	426	Target Neighborhood Hits	316	Shared Neighborhood Hits	281
SwissProt Accessions	Q9BQY4, Q9BR00	Gene names	PEPP2, THG1
Domain Architecture
Description	Paired-like homeobox protein PEPP-2 (Testis homeobox gene 1).

PF21A_HUMAN
θ value	6.88961 (rank : 406)	NC score	0.008975 (rank : 436)
Query Neighborhood Hits	426	Target Neighborhood Hits	303	Shared Neighborhood Hits	16
SwissProt Accessions	Q96BD5, Q6AWA2, Q9C0G7, Q9H8V9, Q9HAK6, Q9NZE9	Gene names	PHF21A, BHC80, KIAA1696
Domain Architecture	No domain graphic available
Description	PHD finger protein 21A (BRAF35-HDAC complex protein BHC80) (BHC80a).

PGCA_MOUSE
θ value	6.88961 (rank : 407)	NC score	0.010410 (rank : 431)
Query Neighborhood Hits	426	Target Neighborhood Hits	643	Shared Neighborhood Hits	40
SwissProt Accessions	Q61282, Q64021	Gene names	Agc1, Agc
Domain Architecture
Description	Aggrecan core protein precursor (Cartilage-specific proteoglycan core protein) (CSPCP).

PRAX_HUMAN
θ value	6.88961 (rank : 408)	NC score	0.014803 (rank : 420)
Query Neighborhood Hits	426	Target Neighborhood Hits	215	Shared Neighborhood Hits	20
SwissProt Accessions	Q9BXM0, Q9BXL9, Q9HCF2	Gene names	PRX, KIAA1620
Domain Architecture
Description	Periaxin.

SIX4_HUMAN
θ value	6.88961 (rank : 409)	NC score	0.149336 (rank : 317)
Query Neighborhood Hits	426	Target Neighborhood Hits	342	Shared Neighborhood Hits	268
SwissProt Accessions	Q9UIU6	Gene names	SIX4
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4).

SYNPO_HUMAN
θ value	6.88961 (rank : 410)	NC score	0.010826 (rank : 426)
Query Neighborhood Hits	426	Target Neighborhood Hits	281	Shared Neighborhood Hits	25
SwissProt Accessions	Q8N3V7, O15271, Q9UPX1	Gene names	SYNPO, KIAA1029
Domain Architecture	No domain graphic available
Description	Synaptopodin.

TITIN_HUMAN
θ value	6.88961 (rank : 411)	NC score	-0.008506 (rank : 469)
Query Neighborhood Hits	426	Target Neighborhood Hits	2923	Shared Neighborhood Hits	55
SwissProt Accessions	Q8WZ42, Q10465, Q10466, Q15598, Q2XUS3, Q32Q60, Q4U1Z6, Q6NSG0, Q6PDB1, Q6PJP0, Q7KYM2, Q7KYN4, Q7KYN5, Q7LDM3, Q7Z2X3, Q8TCG8, Q8WZ51, Q8WZ52, Q8WZ53, Q8WZB3, Q92761, Q92762, Q9UD97, Q9UP84, Q9Y6L9	Gene names	TTN
Domain Architecture	No domain graphic available
Description	Titin (EC 2.7.11.1) (Connectin) (Rhabdomyosarcoma antigen MU-RMS- 40.14).

ZFY16_HUMAN
θ value	6.88961 (rank : 412)	NC score	0.001854 (rank : 451)
Query Neighborhood Hits	426	Target Neighborhood Hits	125	Shared Neighborhood Hits	4
SwissProt Accessions	Q7Z3T8, O15023, Q7LAU7, Q86T69, Q8N5L3, Q8NEK3	Gene names	ZFYVE16, KIAA0305
Domain Architecture	No domain graphic available
Description	Zinc finger FYVE domain-containing protein 16 (Endofin) (Endosome- associated FYVE domain protein).

ATX1_MOUSE
θ value	8.99809 (rank : 413)	NC score	0.027600 (rank : 398)
Query Neighborhood Hits	426	Target Neighborhood Hits	264	Shared Neighborhood Hits	26
SwissProt Accessions	P54254	Gene names	Atxn1, Sca1
Domain Architecture
Description	Ataxin-1 (Spinocerebellar ataxia type 1 protein homolog).

BAZ2A_HUMAN
θ value	8.99809 (rank : 414)	NC score	0.011777 (rank : 423)
Query Neighborhood Hits	426	Target Neighborhood Hits	780	Shared Neighborhood Hits	53
SwissProt Accessions	Q9UIF9, O00536, O15030, Q96H26	Gene names	BAZ2A, KIAA0314, TIP5
Domain Architecture
Description	Bromodomain adjacent to zinc finger domain 2A (Transcription termination factor I-interacting protein 5) (TTF-I-interacting protein 5) (Tip5) (hWALp3).

CIC_MOUSE
θ value	8.99809 (rank : 415)	NC score	0.017090 (rank : 418)
Query Neighborhood Hits	426	Target Neighborhood Hits	742	Shared Neighborhood Hits	57
SwissProt Accessions	Q924A2, Q6PDJ8, Q8CGE4, Q8CHH0, Q9CW61	Gene names	Cic, Kiaa0306
Domain Architecture	No domain graphic available
Description	Protein capicua homolog.

CNOT3_HUMAN
θ value	8.99809 (rank : 416)	NC score	0.018606 (rank : 414)
Query Neighborhood Hits	426	Target Neighborhood Hits	425	Shared Neighborhood Hits	35
SwissProt Accessions	O75175, Q9NZN7, Q9UF76	Gene names	CNOT3, KIAA0691, NOT3
Domain Architecture
Description	CCR4-NOT transcription complex subunit 3 (CCR4-associated factor 3).

DAB2_HUMAN
θ value	8.99809 (rank : 417)	NC score	0.009480 (rank : 432)
Query Neighborhood Hits	426	Target Neighborhood Hits	197	Shared Neighborhood Hits	17
SwissProt Accessions	P98082, Q13598, Q9BTY0, Q9UK04	Gene names	DAB2, DOC2
Domain Architecture
Description	Disabled homolog 2 (Differentially expressed protein 2) (DOC-2).

IRX2_HUMAN
θ value	8.99809 (rank : 418)	NC score	0.106973 (rank : 339)
Query Neighborhood Hits	426	Target Neighborhood Hits	358	Shared Neighborhood Hits	205
SwissProt Accessions	Q9BZI1, Q7Z2I7	Gene names	IRX2, IRXA2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

IRX2_MOUSE
θ value	8.99809 (rank : 419)	NC score	0.098199 (rank : 343)
Query Neighborhood Hits	426	Target Neighborhood Hits	264	Shared Neighborhood Hits	192
SwissProt Accessions	P81066, O55121, Q9ERN1	Gene names	Irx2, Irxa2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

KIF12_MOUSE
θ value	8.99809 (rank : 420)	NC score	-0.000937 (rank : 456)
Query Neighborhood Hits	426	Target Neighborhood Hits	94	Shared Neighborhood Hits	6
SwissProt Accessions	Q9D2Z8, O35061	Gene names	Kif12
Domain Architecture
Description	Kinesin-like protein KIF12.

MEGF9_MOUSE
θ value	8.99809 (rank : 421)	NC score	0.003139 (rank : 450)
Query Neighborhood Hits	426	Target Neighborhood Hits	896	Shared Neighborhood Hits	44
SwissProt Accessions	Q8BH27, Q8BWI4	Gene names	Megf9, Egfl5, Kiaa0818
Domain Architecture
Description	Multiple epidermal growth factor-like domains 9 precursor (EGF-like domain-containing protein 5) (Multiple EGF-like domain protein 5).

PER3_HUMAN
θ value	8.99809 (rank : 422)	NC score	0.010533 (rank : 430)
Query Neighborhood Hits	426	Target Neighborhood Hits	479	Shared Neighborhood Hits	38
SwissProt Accessions	P56645, Q5H8X4, Q969K6, Q96S77, Q96S78, Q9C0J3, Q9NSP9, Q9UGU8	Gene names	PER3
Domain Architecture
Description	Period circadian protein 3 (hPER3).

PKNX1_HUMAN
θ value	8.99809 (rank : 423)	NC score	0.025731 (rank : 401)
Query Neighborhood Hits	426	Target Neighborhood Hits	101	Shared Neighborhood Hits	60
SwissProt Accessions	P55347, O00528, Q8IWT7	Gene names	PKNOX1, PREP1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1) (Homeobox protein PREP-1).

PORIM_MOUSE
θ value	8.99809 (rank : 424)	NC score	0.011485 (rank : 425)
Query Neighborhood Hits	426	Target Neighborhood Hits	43	Shared Neighborhood Hits	7
SwissProt Accessions	Q91Z22, Q3T9F6, Q3TLL2, Q3U1R6, Q8CEX4	Gene names	Tmem123
Domain Architecture	No domain graphic available
Description	Porimin precursor (Transmembrane protein 123).

SYNJ1_HUMAN
θ value	8.99809 (rank : 425)	NC score	0.018492 (rank : 415)
Query Neighborhood Hits	426	Target Neighborhood Hits	498	Shared Neighborhood Hits	40
SwissProt Accessions	O43426, O43425, O94984	Gene names	SYNJ1, KIAA0910
Domain Architecture
Description	Synaptojanin-1 (EC 3.1.3.36) (Synaptic inositol-1,4,5-trisphosphate 5- phosphatase 1).

TSH3_HUMAN
θ value	8.99809 (rank : 426)	NC score	0.004041 (rank : 446)
Query Neighborhood Hits	426	Target Neighborhood Hits	564	Shared Neighborhood Hits	22
SwissProt Accessions	Q63HK5, Q9H0G6, Q9P254	Gene names	TSHZ3, KIAA1474, TSH3, ZNF537
Domain Architecture	No domain graphic available
Description	Teashirt homolog 3 (Zinc finger protein 537).

ADNP_HUMAN
θ value	θ > 10 (rank : 427)	NC score	0.055700 (rank : 366)
Query Neighborhood Hits	426	Target Neighborhood Hits	265	Shared Neighborhood Hits	40
SwissProt Accessions	Q9H2P0, O94881, Q9UG34	Gene names	ADNP, KIAA0784
Domain Architecture
Description	Activity-dependent neuroprotector (Activity-dependent neuroprotective protein).

ADNP_MOUSE
θ value	θ > 10 (rank : 428)	NC score	0.051932 (rank : 371)
Query Neighborhood Hits	426	Target Neighborhood Hits	232	Shared Neighborhood Hits	43
SwissProt Accessions	Q9Z103	Gene names	Adnp
Domain Architecture
Description	Activity-dependent neuroprotector (Activity-dependent neuroprotective protein).

DUX2_HUMAN
θ value	θ > 10 (rank : 429)	NC score	0.211793 (rank : 297)
Query Neighborhood Hits	426	Target Neighborhood Hits	173	Shared Neighborhood Hits	169
SwissProt Accessions	O75505	Gene names	DUX2
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 2.

HMBX1_HUMAN
θ value	θ > 10 (rank : 430)	NC score	0.070229 (rank : 347)
Query Neighborhood Hits	426	Target Neighborhood Hits	118	Shared Neighborhood Hits	88
SwissProt Accessions	Q6NT76, Q3Y6P1, Q96GS5, Q9H701	Gene names	HMBOX1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

HMBX1_MOUSE
θ value	θ > 10 (rank : 431)	NC score	0.069763 (rank : 348)
Query Neighborhood Hits	426	Target Neighborhood Hits	117	Shared Neighborhood Hits	88
SwissProt Accessions	Q8BJA3, Q80WC2, Q8BWE7, Q99LV1	Gene names	Hmbox1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

HOMEZ_HUMAN
θ value	θ > 10 (rank : 432)	NC score	0.057422 (rank : 363)
Query Neighborhood Hits	426	Target Neighborhood Hits	110	Shared Neighborhood Hits	49
SwissProt Accessions	Q8IX15, Q6P049, Q86XB6, Q9P2A5	Gene names	HOMEZ, KIAA1443
Domain Architecture
Description	Homeobox and leucine zipper protein Homez (Homeodomain leucine zipper- containing factor).

HOP_HUMAN
θ value	θ > 10 (rank : 433)	NC score	0.125700 (rank : 330)
Query Neighborhood Hits	426	Target Neighborhood Hits	107	Shared Neighborhood Hits	94
SwissProt Accessions	Q9BPY8, Q8N0V6, Q96CI1	Gene names	HOP, HOD, LAGY, NECC1, OB1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Lung cancer-associated Y protein) (Odd homeobox protein 1) (Not expressed in choriocarcinoma protein 1).

HOP_MOUSE
θ value	θ > 10 (rank : 434)	NC score	0.114628 (rank : 335)
Query Neighborhood Hits	426	Target Neighborhood Hits	102	Shared Neighborhood Hits	88
SwissProt Accessions	Q8R1H0, Q8C1N5, Q8CJ22	Gene names	Hop, Hod, Ob1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Homeobox-only protein) (Odd homeobox protein 1) (mOB1).

IRX3_HUMAN
θ value	θ > 10 (rank : 435)	NC score	0.109797 (rank : 337)
Query Neighborhood Hits	426	Target Neighborhood Hits	342	Shared Neighborhood Hits	198
SwissProt Accessions	P78415, Q7Z4A4, Q7Z4A5, Q8IVC6	Gene names	IRX3, IRXB1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

IRX3_MOUSE
θ value	θ > 10 (rank : 436)	NC score	0.110642 (rank : 336)
Query Neighborhood Hits	426	Target Neighborhood Hits	303	Shared Neighborhood Hits	198
SwissProt Accessions	P81067	Gene names	Irx3, Irxb1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

IRX5_HUMAN
θ value	θ > 10 (rank : 437)	NC score	0.101833 (rank : 340)
Query Neighborhood Hits	426	Target Neighborhood Hits	362	Shared Neighborhood Hits	196
SwissProt Accessions	P78411, P78416, Q7Z2E1	Gene names	IRX5, IRX2A, IRXB2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2) (IRX-2A).

IRX5_MOUSE
θ value	θ > 10 (rank : 438)	NC score	0.097058 (rank : 344)
Query Neighborhood Hits	426	Target Neighborhood Hits	324	Shared Neighborhood Hits	194
SwissProt Accessions	Q9JKQ4, Q80WV4, Q9JLL5	Gene names	Irx5, Irxb2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2).

LHX2_HUMAN
θ value	θ > 10 (rank : 439)	NC score	0.300507 (rank : 287)
Query Neighborhood Hits	426	Target Neighborhood Hits	432	Shared Neighborhood Hits	298
SwissProt Accessions	P50458, O95860, Q8N1Z3	Gene names	LHX2, LH2
Domain Architecture
Description	LIM/homeobox protein Lhx2 (Homeobox protein LH-2).

LHX2_MOUSE
θ value	θ > 10 (rank : 440)	NC score	0.300419 (rank : 288)
Query Neighborhood Hits	426	Target Neighborhood Hits	431	Shared Neighborhood Hits	298
SwissProt Accessions	Q9Z0S2	Gene names	Lhx2
Domain Architecture
Description	LIM/homeobox protein Lhx2.

LHX8_MOUSE
θ value	θ > 10 (rank : 441)	NC score	0.323200 (rank : 283)
Query Neighborhood Hits	426	Target Neighborhood Hits	406	Shared Neighborhood Hits	285
SwissProt Accessions	O35652, O70163, O88707	Gene names	Lhx8, Lhx7
Domain Architecture
Description	LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3).

LHX9_HUMAN
θ value	θ > 10 (rank : 442)	NC score	0.297033 (rank : 291)
Query Neighborhood Hits	426	Target Neighborhood Hits	444	Shared Neighborhood Hits	297
SwissProt Accessions	Q9NQ69, Q5VUE3, Q9BYU6, Q9NQ70	Gene names	LHX9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

LHX9_MOUSE
θ value	θ > 10 (rank : 443)	NC score	0.297174 (rank : 290)
Query Neighborhood Hits	426	Target Neighborhood Hits	445	Shared Neighborhood Hits	297
SwissProt Accessions	Q9WUH2, Q9QYQ5, Q9QYQ6, Q9QZ00, Q9WU44	Gene names	Lhx9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

LMO3_HUMAN
θ value	θ > 10 (rank : 444)	NC score	0.066778 (rank : 355)
Query Neighborhood Hits	426	Target Neighborhood Hits	111	Shared Neighborhood Hits	19
SwissProt Accessions	Q8TAP4, Q8N974, Q9UDD5	Gene names	LMO3, RBTN3, RHOM3
Domain Architecture
Description	LIM-only protein 3 (Neuronal-specific transcription factor DAT1) (Rhombotin-3).

LMO3_MOUSE
θ value	θ > 10 (rank : 445)	NC score	0.066778 (rank : 356)
Query Neighborhood Hits	426	Target Neighborhood Hits	111	Shared Neighborhood Hits	19
SwissProt Accessions	Q8BZL8	Gene names	Lmo3
Domain Architecture
Description	LIM-only protein 3 (Neuronal-specific transcription factor DAT1).

LMO4_HUMAN
θ value	θ > 10 (rank : 446)	NC score	0.068781 (rank : 349)
Query Neighborhood Hits	426	Target Neighborhood Hits	111	Shared Neighborhood Hits	19
SwissProt Accessions	P61968, O00158, O88894	Gene names	LMO4
Domain Architecture
Description	LIM domain transcription factor LMO4 (LIM domain only protein 4) (LMO- 4) (Breast tumor autoantigen).

LMO4_MOUSE
θ value	θ > 10 (rank : 447)	NC score	0.068781 (rank : 350)
Query Neighborhood Hits	426	Target Neighborhood Hits	111	Shared Neighborhood Hits	19
SwissProt Accessions	P61969, O00158, O88894	Gene names	Lmo4
Domain Architecture
Description	LIM domain transcription factor LMO4 (LIM domain only protein 4) (LMO- 4) (Breast tumor autoantigen).

MEIS3_HUMAN
θ value	θ > 10 (rank : 448)	NC score	0.051776 (rank : 372)
Query Neighborhood Hits	426	Target Neighborhood Hits	118	Shared Neighborhood Hits	79
SwissProt Accessions	Q99687, Q6NT73, Q8TC66, Q9NPW2	Gene names	MEIS3, MRG2
Domain Architecture	No domain graphic available
Description	Homeobox protein Meis3 (Meis1-related protein 2).

PAX2_HUMAN
θ value	θ > 10 (rank : 449)	NC score	0.055365 (rank : 369)
Query Neighborhood Hits	426	Target Neighborhood Hits	84	Shared Neighborhood Hits	53
SwissProt Accessions	Q02962, Q15105, Q15110, Q15837	Gene names	PAX2
Domain Architecture
Description	Paired box protein Pax-2.

PAX2_MOUSE
θ value	θ > 10 (rank : 450)	NC score	0.055644 (rank : 367)
Query Neighborhood Hits	426	Target Neighborhood Hits	86	Shared Neighborhood Hits	53
SwissProt Accessions	P32114	Gene names	Pax2, Pax-2
Domain Architecture
Description	Paired box protein Pax-2.

PAX5_HUMAN
θ value	θ > 10 (rank : 451)	NC score	0.051399 (rank : 374)
Query Neighborhood Hits	426	Target Neighborhood Hits	106	Shared Neighborhood Hits	49
SwissProt Accessions	Q02548, O75933	Gene names	PAX5
Domain Architecture
Description	Paired box protein Pax-5 (B-cell-specific transcription factor) (BSAP).

PAX5_MOUSE
θ value	θ > 10 (rank : 452)	NC score	0.051474 (rank : 373)
Query Neighborhood Hits	426	Target Neighborhood Hits	106	Shared Neighborhood Hits	51
SwissProt Accessions	Q02650	Gene names	Pax5, Pax-5
Domain Architecture
Description	Paired box protein Pax-5 (B-cell-specific transcription factor) (BSAP).

PBX1_HUMAN
θ value	θ > 10 (rank : 453)	NC score	0.157715 (rank : 312)
Query Neighborhood Hits	426	Target Neighborhood Hits	317	Shared Neighborhood Hits	263
SwissProt Accessions	P40424	Gene names	PBX1, PRL
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1) (Homeobox protein PRL).

PBX1_MOUSE
θ value	θ > 10 (rank : 454)	NC score	0.157715 (rank : 313)
Query Neighborhood Hits	426	Target Neighborhood Hits	317	Shared Neighborhood Hits	263
SwissProt Accessions	P41778	Gene names	Pbx1, Pbx-1
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1).

PBX2_HUMAN
θ value	θ > 10 (rank : 455)	NC score	0.172299 (rank : 304)
Query Neighborhood Hits	426	Target Neighborhood Hits	350	Shared Neighborhood Hits	271
SwissProt Accessions	P40425	Gene names	PBX2, G17
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2) (Protein G17).

PBX2_MOUSE
θ value	θ > 10 (rank : 456)	NC score	0.175294 (rank : 302)
Query Neighborhood Hits	426	Target Neighborhood Hits	341	Shared Neighborhood Hits	271
SwissProt Accessions	O35984	Gene names	Pbx2
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2).

PBX3_HUMAN
θ value	θ > 10 (rank : 457)	NC score	0.161009 (rank : 311)
Query Neighborhood Hits	426	Target Neighborhood Hits	306	Shared Neighborhood Hits	262
SwissProt Accessions	P40426, Q96PF9, Q96PG0	Gene names	PBX3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX3_MOUSE
θ value	θ > 10 (rank : 458)	NC score	0.161031 (rank : 310)
Query Neighborhood Hits	426	Target Neighborhood Hits	306	Shared Neighborhood Hits	262
SwissProt Accessions	O35317, Q925W2	Gene names	Pbx3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX4_MOUSE
θ value	θ > 10 (rank : 459)	NC score	0.156043 (rank : 314)
Query Neighborhood Hits	426	Target Neighborhood Hits	324	Shared Neighborhood Hits	263
SwissProt Accessions	Q99NE9, Q8CFL2, Q99NE8	Gene names	Pbx4
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 4 (Homeobox protein PBX4).

RBTN1_HUMAN
θ value	θ > 10 (rank : 460)	NC score	0.067139 (rank : 353)
Query Neighborhood Hits	426	Target Neighborhood Hits	110	Shared Neighborhood Hits	19
SwissProt Accessions	P25800, Q4VBC5	Gene names	LMO1, RBTN1, RHOM1, TTG1
Domain Architecture
Description	Rhombotin-1 (Cysteine-rich protein TTG-1) (T-cell translocation protein 1) (LIM-only protein 1).

RBTN1_MOUSE
θ value	θ > 10 (rank : 461)	NC score	0.067117 (rank : 354)
Query Neighborhood Hits	426	Target Neighborhood Hits	109	Shared Neighborhood Hits	19
SwissProt Accessions	Q924W9	Gene names	Lmo1, Rbtn1, Rhom1, Ttg1
Domain Architecture	No domain graphic available
Description	Rhombotin-1 (Cysteine-rich protein TTG-1) (LIM-only protein 1).

RBTN2_HUMAN
θ value	θ > 10 (rank : 462)	NC score	0.064242 (rank : 359)
Query Neighborhood Hits	426	Target Neighborhood Hits	114	Shared Neighborhood Hits	19
SwissProt Accessions	P25791, Q9HD58	Gene names	LMO2, RBTN2, RHOM2, TTG2
Domain Architecture
Description	Rhombotin-2 (Cysteine-rich protein TTG-2) (T-cell translocation protein 2) (LIM-only protein 2).

RBTN2_MOUSE
θ value	θ > 10 (rank : 463)	NC score	0.064244 (rank : 358)
Query Neighborhood Hits	426	Target Neighborhood Hits	114	Shared Neighborhood Hits	19
SwissProt Accessions	P25801	Gene names	Lmo2, Rbtn-2, Rbtn2, Rhom-2
Domain Architecture
Description	Rhombotin-2 (Cysteine-rich protein TTG-2) (T-cell translocation protein 2) (LIM-only protein 2).

RHOX5_MOUSE
θ value	θ > 10 (rank : 464)	NC score	0.078852 (rank : 345)
Query Neighborhood Hits	426	Target Neighborhood Hits	69	Shared Neighborhood Hits	54
SwissProt Accessions	P52651	Gene names	Rhox5, Pem
Domain Architecture	No domain graphic available
Description	Homeobox protein Rhox5 (Reproductive homeobox on chromosome X 5) (Homeobox protein Pem) (Placenta and embryonic expression protein).

SIX1_HUMAN
θ value	θ > 10 (rank : 465)	NC score	0.163275 (rank : 309)
Query Neighborhood Hits	426	Target Neighborhood Hits	343	Shared Neighborhood Hits	285
SwissProt Accessions	Q15475, Q96H64	Gene names	SIX1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

SIX1_MOUSE
θ value	θ > 10 (rank : 466)	NC score	0.163569 (rank : 308)
Query Neighborhood Hits	426	Target Neighborhood Hits	341	Shared Neighborhood Hits	285
SwissProt Accessions	Q62231, Q8CIL7	Gene names	Six1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

SIX2_HUMAN
θ value	θ > 10 (rank : 467)	NC score	0.167063 (rank : 306)
Query Neighborhood Hits	426	Target Neighborhood Hits	345	Shared Neighborhood Hits	277
SwissProt Accessions	Q9NPC8, Q9BXH7	Gene names	SIX2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

SIX2_MOUSE
θ value	θ > 10 (rank : 468)	NC score	0.172650 (rank : 303)
Query Neighborhood Hits	426	Target Neighborhood Hits	376	Shared Neighborhood Hits	295
SwissProt Accessions	Q62232, P70179	Gene names	Six2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

SIX3_HUMAN
θ value	θ > 10 (rank : 469)	NC score	0.124449 (rank : 331)
Query Neighborhood Hits	426	Target Neighborhood Hits	285	Shared Neighborhood Hits	236
SwissProt Accessions	O95343	Gene names	SIX3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX3_MOUSE
θ value	θ > 10 (rank : 470)	NC score	0.124420 (rank : 332)
Query Neighborhood Hits	426	Target Neighborhood Hits	289	Shared Neighborhood Hits	236
SwissProt Accessions	Q62233, P70176, P70177	Gene names	Six3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX6_HUMAN
θ value	θ > 10 (rank : 471)	NC score	0.120839 (rank : 333)
Query Neighborhood Hits	426	Target Neighborhood Hits	269	Shared Neighborhood Hits	224
SwissProt Accessions	O95475, Q9P1X8	Gene names	SIX6, OPTX2, SIX9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Homeodomain protein OPTX2).

SIX6_MOUSE
θ value	θ > 10 (rank : 472)	NC score	0.116224 (rank : 334)
Query Neighborhood Hits	426	Target Neighborhood Hits	267	Shared Neighborhood Hits	224
SwissProt Accessions	Q9QZ28, O88423	Gene names	Six6, Optx2, Six9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Six9 protein).

Hits sorted by NC score

PO2F1_HUMAN
NC score	0.999962 (rank : 1)	θ value	2.67656e-153 (rank : 1)
Query Neighborhood Hits	426	Target Neighborhood Hits	426	Shared Neighborhood Hits	426
SwissProt Accessions	P14859, Q5TBT7, Q6PK46, Q8NEU9, Q9BPV1	Gene names	POU2F1, OCT1, OTF1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

PO2F1_MOUSE
NC score	0.984730 (rank : 2)	θ value	1.42583e-138 (rank : 2)
Query Neighborhood Hits	426	Target Neighborhood Hits	408	Shared Neighborhood Hits	359
SwissProt Accessions	P25425, Q61994, Q63891, Q6Y681, Q7TSD0, Q8BT04, Q8K570, Q99JH0, Q9WTZ4, Q9WTZ5, Q9WTZ6	Gene names	Pou2f1, Oct-1, Otf-1, Otf1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

PO2F2_MOUSE
NC score	0.968293 (rank : 3)	θ value	1.5519e-76 (rank : 4)
Query Neighborhood Hits	426	Target Neighborhood Hits	353	Shared Neighborhood Hits	305
SwissProt Accessions	Q00196, Q00197, Q00198, Q00199, Q00200, Q00201, Q05882, Q61995, Q61996, Q64245	Gene names	Pou2f2, Oct2, Otf2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

PO2F2_HUMAN
NC score	0.966097 (rank : 4)	θ value	8.22888e-78 (rank : 3)
Query Neighborhood Hits	426	Target Neighborhood Hits	379	Shared Neighborhood Hits	306
SwissProt Accessions	P09086, Q16648, Q9BRS4	Gene names	POU2F2, OCT2, OTF2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

PO2F3_HUMAN
NC score	0.964134 (rank : 5)	θ value	3.96481e-64 (rank : 6)
Query Neighborhood Hits	426	Target Neighborhood Hits	319	Shared Neighborhood Hits	300
SwissProt Accessions	Q9UKI9, Q9UKR7, Q9Y504	Gene names	POU2F3, OTF11, PLA1
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Transcription factor Skn-1) (PLA-1 protein).

PO2F3_MOUSE
NC score	0.963584 (rank : 6)	θ value	7.98882e-65 (rank : 5)
Query Neighborhood Hits	426	Target Neighborhood Hits	328	Shared Neighborhood Hits	302
SwissProt Accessions	P31362	Gene names	Pou2f3, Epoc1, Oct11, Otf-11, Otf11
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Epoc-1).

PO3F3_HUMAN
NC score	0.941576 (rank : 7)	θ value	4.11246e-53 (rank : 9)
Query Neighborhood Hits	426	Target Neighborhood Hits	311	Shared Neighborhood Hits	271
SwissProt Accessions	P20264, P78379	Gene names	POU3F3, BRN1, OTF8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

PO3F3_MOUSE
NC score	0.941495 (rank : 8)	θ value	4.11246e-53 (rank : 10)
Query Neighborhood Hits	426	Target Neighborhood Hits	308	Shared Neighborhood Hits	270
SwissProt Accessions	P31361	Gene names	Pou3f3, Brn-1, Brn1, Otf8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

PO3F1_MOUSE
NC score	0.941166 (rank : 9)	θ value	1.01294e-51 (rank : 14)
Query Neighborhood Hits	426	Target Neighborhood Hits	261	Shared Neighborhood Hits	242
SwissProt Accessions	P21952	Gene names	Pou3f1, Oct6, Otf-6, Otf6, Scip
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

PO3F1_HUMAN
NC score	0.940790 (rank : 10)	θ value	1.01294e-51 (rank : 13)
Query Neighborhood Hits	426	Target Neighborhood Hits	256	Shared Neighborhood Hits	241
SwissProt Accessions	Q03052	Gene names	POU3F1, OCT6, OTF6
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

PO3F2_MOUSE
NC score	0.940561 (rank : 11)	θ value	3.1488e-53 (rank : 8)
Query Neighborhood Hits	426	Target Neighborhood Hits	313	Shared Neighborhood Hits	275
SwissProt Accessions	P31360	Gene names	Pou3f2, Brn-2, Brn2, Otf7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

PO3F2_HUMAN
NC score	0.940524 (rank : 12)	θ value	3.1488e-53 (rank : 7)
Query Neighborhood Hits	426	Target Neighborhood Hits	308	Shared Neighborhood Hits	274
SwissProt Accessions	P20265, Q14960, Q86V54, Q9UJL0	Gene names	POU3F2, BRN2, OCT7, OTF7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

PIT1_MOUSE
NC score	0.938280 (rank : 13)	θ value	4.71619e-41 (rank : 17)
Query Neighborhood Hits	426	Target Neighborhood Hits	313	Shared Neighborhood Hits	289
SwissProt Accessions	Q00286	Gene names	Pou1f1, Pit-1, Pit1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

PIT1_HUMAN
NC score	0.933397 (rank : 14)	θ value	2.34062e-40 (rank : 18)
Query Neighborhood Hits	426	Target Neighborhood Hits	292	Shared Neighborhood Hits	278
SwissProt Accessions	P28069, O75757, Q15132, Q15133, Q9UEL3	Gene names	POU1F1, GHF1, PIT1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

PO3F4_MOUSE
NC score	0.933070 (rank : 15)	θ value	2.041e-52 (rank : 11)
Query Neighborhood Hits	426	Target Neighborhood Hits	281	Shared Neighborhood Hits	246
SwissProt Accessions	P62515, P25216	Gene names	Pou3f4, Brn-4, Brn4, Otf9
Domain Architecture	No domain graphic available
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

PO3F4_HUMAN
NC score	0.931407 (rank : 16)	θ value	5.93839e-52 (rank : 12)
Query Neighborhood Hits	426	Target Neighborhood Hits	297	Shared Neighborhood Hits	248
SwissProt Accessions	P49335, Q5H9G9, Q99410	Gene names	POU3F4, BRN4, OTF9
Domain Architecture
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

PO5F1_MOUSE
NC score	0.913109 (rank : 17)	θ value	1.46607e-42 (rank : 15)
Query Neighborhood Hits	426	Target Neighborhood Hits	305	Shared Neighborhood Hits	257
SwissProt Accessions	P20263, Q63843	Gene names	Pou5f1, Oct-3, Oct-4, Otf-3, Otf3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4) (NF-A3).

PO4F1_MOUSE
NC score	0.904543 (rank : 18)	θ value	3.3877e-31 (rank : 27)
Query Neighborhood Hits	426	Target Neighborhood Hits	345	Shared Neighborhood Hits	287
SwissProt Accessions	P17208	Gene names	Pou4f1, Brn-3, Brn3, Brn3a
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Brn-3.0).

PO5F1_HUMAN
NC score	0.904424 (rank : 19)	θ value	1.91475e-42 (rank : 16)
Query Neighborhood Hits	426	Target Neighborhood Hits	321	Shared Neighborhood Hits	260
SwissProt Accessions	Q01860, P31359, Q15167, Q15168, Q16422	Gene names	POU5F1, OCT3, OCT4, OTF3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4).

PO4F2_MOUSE
NC score	0.902969 (rank : 20)	θ value	2.59387e-31 (rank : 25)
Query Neighborhood Hits	426	Target Neighborhood Hits	312	Shared Neighborhood Hits	287
SwissProt Accessions	Q63934, Q63954	Gene names	Pou4f2, Brn3b
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B) (Brn-3.2).

PO4F2_HUMAN
NC score	0.901359 (rank : 21)	θ value	9.8567e-31 (rank : 29)
Query Neighborhood Hits	426	Target Neighborhood Hits	310	Shared Neighborhood Hits	287
SwissProt Accessions	Q12837, Q13883, Q14987	Gene names	POU4F2, BRN3B
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B).

PO4F1_HUMAN
NC score	0.901328 (rank : 22)	θ value	3.3877e-31 (rank : 26)
Query Neighborhood Hits	426	Target Neighborhood Hits	342	Shared Neighborhood Hits	287
SwissProt Accessions	Q01851, Q14986, Q15318	Gene names	POU4F1, BRN3A, RDC1
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Oct-T1) (Homeobox/POU domain protein RDC-1).

PO4F3_HUMAN
NC score	0.898786 (rank : 23)	θ value	1.98606e-31 (rank : 23)
Query Neighborhood Hits	426	Target Neighborhood Hits	307	Shared Neighborhood Hits	284
SwissProt Accessions	Q15319, O60557	Gene names	POU4F3, BRN3C
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

PO4F3_MOUSE
NC score	0.898688 (rank : 24)	θ value	1.98606e-31 (rank : 24)
Query Neighborhood Hits	426	Target Neighborhood Hits	311	Shared Neighborhood Hits	284
SwissProt Accessions	Q63955	Gene names	Pou4f3, Brn-3c, Brn3c
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

PO6F1_HUMAN
NC score	0.898057 (rank : 25)	θ value	5.77852e-31 (rank : 28)
Query Neighborhood Hits	426	Target Neighborhood Hits	370	Shared Neighborhood Hits	304
SwissProt Accessions	Q14863	Gene names	POU6F1, BRN5, MPOU, TCFB1
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (mPOU homeobox protein) (Brain-specific homeobox/POU domain protein 5) (Brain-5) (Brn-5 protein).

PO5FM_HUMAN
NC score	0.888741 (rank : 26)	θ value	3.99248e-40 (rank : 19)
Query Neighborhood Hits	426	Target Neighborhood Hits	212	Shared Neighborhood Hits	181
SwissProt Accessions	Q9BZV7	Gene names	POU5F1P1, POU5FLC20
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 2.

PO5FL_HUMAN
NC score	0.887067 (rank : 27)	θ value	4.41421e-39 (rank : 21)
Query Neighborhood Hits	426	Target Neighborhood Hits	214	Shared Neighborhood Hits	178
SwissProt Accessions	Q06416, Q9BZV9	Gene names	POU5F1P1, OTF3C, POU5FLC8
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 1 (Octamer- binding protein 3-like).

PO5FN_HUMAN
NC score	0.877903 (rank : 28)	θ value	6.81017e-40 (rank : 20)
Query Neighborhood Hits	426	Target Neighborhood Hits	134	Shared Neighborhood Hits	111
SwissProt Accessions	Q9BZW0	Gene names	POU5FLC1
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 3.

PO6F1_MOUSE
NC score	0.871197 (rank : 29)	θ value	4.72714e-33 (rank : 22)
Query Neighborhood Hits	426	Target Neighborhood Hits	581	Shared Neighborhood Hits	312
SwissProt Accessions	Q07916, Q91XK3	Gene names	Pou6f1, Emb
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (Octamer-binding transcription factor EMB) (Transcription regulatory protein MCP-1).

SPRM1_HUMAN
NC score	0.850145 (rank : 30)	θ value	2.87452e-22 (rank : 31)
Query Neighborhood Hits	426	Target Neighborhood Hits	72	Shared Neighborhood Hits	66
SwissProt Accessions	Q8N7G0, Q8N748	Gene names	SPRM1
Domain Architecture
Description	Sperm 1 POU-domain transcription factor (SPRM-1).

SPRM1_MOUSE
NC score	0.840866 (rank : 31)	θ value	2.59989e-23 (rank : 30)
Query Neighborhood Hits	426	Target Neighborhood Hits	73	Shared Neighborhood Hits	62
SwissProt Accessions	Q9DAC9	Gene names	Sprm1
Domain Architecture
Description	Sperm 1 POU-domain transcription factor (SPRM-1).

PO6F2_HUMAN
NC score	0.817707 (rank : 32)	θ value	7.0802e-21 (rank : 33)
Query Neighborhood Hits	426	Target Neighborhood Hits	618	Shared Neighborhood Hits	314
SwissProt Accessions	P78424, P78425, Q75ME8, Q86UM6, Q9UDS7	Gene names	POU6F2, RPF1
Domain Architecture
Description	POU domain, class 6, transcription factor 2 (Retina-derived POU-domain factor 1) (RPF-1).

PO6F2_MOUSE
NC score	0.815319 (rank : 33)	θ value	1.09232e-21 (rank : 32)
Query Neighborhood Hits	426	Target Neighborhood Hits	639	Shared Neighborhood Hits	325
SwissProt Accessions	Q8BJI4	Gene names	Pou6f2
Domain Architecture	No domain graphic available
Description	POU domain, class 6, transcription factor 2.

VAX2_HUMAN
NC score	0.496074 (rank : 34)	θ value	0.000461057 (rank : 49)
Query Neighborhood Hits	426	Target Neighborhood Hits	337	Shared Neighborhood Hits	303
SwissProt Accessions	Q9UIW0	Gene names	VAX2
Domain Architecture
Description	Ventral anterior homeobox 2.

VAX2_MOUSE
NC score	0.496030 (rank : 35)	θ value	0.000461057 (rank : 50)
Query Neighborhood Hits	426	Target Neighborhood Hits	338	Shared Neighborhood Hits	304
SwissProt Accessions	Q9WTP9	Gene names	Vax2, Vex
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 2 (Ventral retina homeodomain protein).

VAX1_MOUSE
NC score	0.493921 (rank : 36)	θ value	0.000461057 (rank : 48)
Query Neighborhood Hits	426	Target Neighborhood Hits	351	Shared Neighborhood Hits	304
SwissProt Accessions	Q2NKI2, O88880	Gene names	Vax1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

VAX1_HUMAN
NC score	0.493624 (rank : 37)	θ value	0.000461057 (rank : 47)
Query Neighborhood Hits	426	Target Neighborhood Hits	355	Shared Neighborhood Hits	303
SwissProt Accessions	Q5SQQ9, Q6ZSX0	Gene names	VAX1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

HESX1_MOUSE
NC score	0.490732 (rank : 38)	θ value	0.00298849 (rank : 75)
Query Neighborhood Hits	426	Target Neighborhood Hits	331	Shared Neighborhood Hits	304
SwissProt Accessions	Q61658, Q61047	Gene names	Hesx1, Hes-1, Rpx
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (Anterior- restricted homeobox protein) (Rathke pouch homeo box).

HXD12_MOUSE
NC score	0.488165 (rank : 39)	θ value	0.000786445 (rank : 56)
Query Neighborhood Hits	426	Target Neighborhood Hits	370	Shared Neighborhood Hits	298
SwissProt Accessions	P23812	Gene names	Hoxd12, Hox-4.7, Hoxd-12
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4.7) (Hox-5.6).

HESX1_HUMAN
NC score	0.483209 (rank : 40)	θ value	0.00390308 (rank : 81)
Query Neighborhood Hits	426	Target Neighborhood Hits	326	Shared Neighborhood Hits	305
SwissProt Accessions	Q9UBX0, Q99667	Gene names	HESX1, HANF
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (hAnf).

HXD12_HUMAN
NC score	0.481182 (rank : 41)	θ value	0.00134147 (rank : 67)
Query Neighborhood Hits	426	Target Neighborhood Hits	334	Shared Neighborhood Hits	298
SwissProt Accessions	P35452, Q9NS03	Gene names	HOXD12, HOX4H
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4H).

GBX1_HUMAN
NC score	0.476081 (rank : 42)	θ value	0.000270298 (rank : 44)
Query Neighborhood Hits	426	Target Neighborhood Hits	334	Shared Neighborhood Hits	292
SwissProt Accessions	Q14549	Gene names	GBX1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

HXC12_HUMAN
NC score	0.475549 (rank : 43)	θ value	7.1131e-05 (rank : 40)
Query Neighborhood Hits	426	Target Neighborhood Hits	313	Shared Neighborhood Hits	290
SwissProt Accessions	P31275, Q9BXJ6	Gene names	HOXC12, HOX3F
Domain Architecture
Description	Homeobox protein Hox-C12 (Hox-3F).

HXC12_MOUSE
NC score	0.475218 (rank : 44)	θ value	7.1131e-05 (rank : 41)
Query Neighborhood Hits	426	Target Neighborhood Hits	316	Shared Neighborhood Hits	291
SwissProt Accessions	Q8K5B8	Gene names	Hoxc12, Hox-3.8, Hoxc-12
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C12 (Hox-3.8).

MSX2_MOUSE
NC score	0.466308 (rank : 45)	θ value	0.000602161 (rank : 53)
Query Neighborhood Hits	426	Target Neighborhood Hits	345	Shared Neighborhood Hits	303
SwissProt Accessions	Q03358, Q63856	Gene names	Msx2, Hox-8.1, Msx-2
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8.1).

GBX2_HUMAN
NC score	0.466153 (rank : 46)	θ value	0.00102713 (rank : 59)
Query Neighborhood Hits	426	Target Neighborhood Hits	322	Shared Neighborhood Hits	295
SwissProt Accessions	P52951, O43833, Q53RX5, Q9Y5Y1	Gene names	GBX2
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2).

GBX1_MOUSE
NC score	0.466083 (rank : 47)	θ value	0.000602161 (rank : 52)
Query Neighborhood Hits	426	Target Neighborhood Hits	350	Shared Neighborhood Hits	292
SwissProt Accessions	P82976, Q8CGW5	Gene names	Gbx1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

ESX1L_HUMAN
NC score	0.465732 (rank : 48)	θ value	0.00509761 (rank : 91)
Query Neighborhood Hits	426	Target Neighborhood Hits	498	Shared Neighborhood Hits	318
SwissProt Accessions	Q8N693, Q7Z6K7	Gene names	ESX1L, ESX1R
Domain Architecture
Description	Extraembryonic, spermatogenesis, homeobox 1-like protein.

GBX2_MOUSE
NC score	0.465224 (rank : 49)	θ value	0.00102713 (rank : 60)
Query Neighborhood Hits	426	Target Neighborhood Hits	326	Shared Neighborhood Hits	296
SwissProt Accessions	P48031	Gene names	Gbx2, Mmoxa, Stra7
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2) (Homeobox protein STRA7).

MEOX1_HUMAN
NC score	0.463220 (rank : 50)	θ value	0.00175202 (rank : 70)
Query Neighborhood Hits	426	Target Neighborhood Hits	342	Shared Neighborhood Hits	300
SwissProt Accessions	P50221	Gene names	MEOX1, MOX1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

MSX2_HUMAN
NC score	0.463191 (rank : 51)	θ value	0.00035302 (rank : 46)
Query Neighborhood Hits	426	Target Neighborhood Hits	337	Shared Neighborhood Hits	303
SwissProt Accessions	P35548	Gene names	MSX2, HOX8
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8).

MEOX1_MOUSE
NC score	0.459024 (rank : 52)	θ value	0.00175202 (rank : 71)
Query Neighborhood Hits	426	Target Neighborhood Hits	345	Shared Neighborhood Hits	304
SwissProt Accessions	P32442	Gene names	Meox1, Mox-1, Mox1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

GSC_HUMAN
NC score	0.453179 (rank : 53)	θ value	0.0330416 (rank : 158)
Query Neighborhood Hits	426	Target Neighborhood Hits	369	Shared Neighborhood Hits	315
SwissProt Accessions	P56915, Q86YR1	Gene names	GSC
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid.

GSCL_HUMAN
NC score	0.452951 (rank : 54)	θ value	0.0113563 (rank : 122)
Query Neighborhood Hits	426	Target Neighborhood Hits	343	Shared Neighborhood Hits	305
SwissProt Accessions	O15499	Gene names	GSCL
Domain Architecture
Description	Homeobox protein goosecoid-like (GSC-2).

GSC_MOUSE
NC score	0.452759 (rank : 55)	θ value	0.0330416 (rank : 159)
Query Neighborhood Hits	426	Target Neighborhood Hits	368	Shared Neighborhood Hits	314
SwissProt Accessions	Q02591	Gene names	Gsc
Domain Architecture
Description	Homeobox protein goosecoid.

MSX1_HUMAN
NC score	0.449688 (rank : 56)	θ value	0.00509761 (rank : 92)
Query Neighborhood Hits	426	Target Neighborhood Hits	374	Shared Neighborhood Hits	300
SwissProt Accessions	P28360, Q96NY4	Gene names	MSX1, HOX7
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7).

EVX1_MOUSE
NC score	0.449421 (rank : 57)	θ value	0.0330416 (rank : 156)
Query Neighborhood Hits	426	Target Neighborhood Hits	350	Shared Neighborhood Hits	304
SwissProt Accessions	P23683	Gene names	Evx1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

MSX3_MOUSE
NC score	0.448981 (rank : 58)	θ value	0.00665767 (rank : 107)
Query Neighborhood Hits	426	Target Neighborhood Hits	330	Shared Neighborhood Hits	300
SwissProt Accessions	P70354, P70246, Q03360, Q80W10	Gene names	Msx3, Msx-3
Domain Architecture
Description	Homeobox protein MSX-3.

EVX1_HUMAN
NC score	0.448770 (rank : 59)	θ value	0.0330416 (rank : 155)
Query Neighborhood Hits	426	Target Neighborhood Hits	349	Shared Neighborhood Hits	305
SwissProt Accessions	P49640	Gene names	EVX1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

MEOX2_HUMAN
NC score	0.447127 (rank : 60)	θ value	0.0563607 (rank : 181)
Query Neighborhood Hits	426	Target Neighborhood Hits	340	Shared Neighborhood Hits	299
SwissProt Accessions	P50222, O75263, Q9UPL6	Gene names	MEOX2, GAX, MOX2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth arrest-specific homeobox).

BSH_MOUSE
NC score	0.446960 (rank : 61)	θ value	0.0330416 (rank : 153)
Query Neighborhood Hits	426	Target Neighborhood Hits	349	Shared Neighborhood Hits	307
SwissProt Accessions	Q810B3	Gene names	Bsx
Domain Architecture	No domain graphic available
Description	Brain-specific homeobox protein homolog.

EVX2_MOUSE
NC score	0.446716 (rank : 62)	θ value	0.0148317 (rank : 132)
Query Neighborhood Hits	426	Target Neighborhood Hits	327	Shared Neighborhood Hits	301
SwissProt Accessions	P49749	Gene names	Evx2, Evx-2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

HMX3_MOUSE
NC score	0.446651 (rank : 63)	θ value	0.0563607 (rank : 176)
Query Neighborhood Hits	426	Target Neighborhood Hits	342	Shared Neighborhood Hits	300
SwissProt Accessions	P42581	Gene names	Hmx3, Nkx-5.1, Nkx5-1
Domain Architecture
Description	Homeobox protein HMX3 (Homeobox protein Nkx-5.1).

MEOX2_MOUSE
NC score	0.446349 (rank : 64)	θ value	0.0563607 (rank : 182)
Query Neighborhood Hits	426	Target Neighborhood Hits	341	Shared Neighborhood Hits	299
SwissProt Accessions	P32443, Q544T6	Gene names	Meox2, Gax, Mox-2, Mox2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2).

MSX1_MOUSE
NC score	0.445120 (rank : 65)	θ value	0.00509761 (rank : 93)
Query Neighborhood Hits	426	Target Neighborhood Hits	322	Shared Neighborhood Hits	298
SwissProt Accessions	P13297	Gene names	Msx1, Hox7, Hox7.1
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7) (Hox- 7.1).

EVX2_HUMAN
NC score	0.444309 (rank : 66)	θ value	0.0148317 (rank : 131)
Query Neighborhood Hits	426	Target Neighborhood Hits	325	Shared Neighborhood Hits	298
SwissProt Accessions	Q03828	Gene names	EVX2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

LBX1_HUMAN
NC score	0.442014 (rank : 67)	θ value	0.00134147 (rank : 68)
Query Neighborhood Hits	426	Target Neighborhood Hits	357	Shared Neighborhood Hits	310
SwissProt Accessions	P52954	Gene names	LBX1
Domain Architecture
Description	Transcription factor LBX1.

GSCL_MOUSE
NC score	0.441906 (rank : 68)	θ value	0.0330416 (rank : 157)
Query Neighborhood Hits	426	Target Neighborhood Hits	339	Shared Neighborhood Hits	306
SwissProt Accessions	P56916	Gene names	Gscl
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid-like (GSC-2).

HXC11_HUMAN
NC score	0.441381 (rank : 69)	θ value	0.00390308 (rank : 84)
Query Neighborhood Hits	426	Target Neighborhood Hits	349	Shared Neighborhood Hits	299
SwissProt Accessions	O43248, Q96DH2	Gene names	HOXC11
Domain Architecture
Description	Homeobox protein Hox-C11.

LBX1_MOUSE
NC score	0.439773 (rank : 70)	θ value	0.0113563 (rank : 127)
Query Neighborhood Hits	426	Target Neighborhood Hits	349	Shared Neighborhood Hits	307
SwissProt Accessions	P52955	Gene names	Lbx1, Lbx1h
Domain Architecture
Description	Transcription factor LBX1.

NKX31_HUMAN
NC score	0.439393 (rank : 71)	θ value	0.365318 (rank : 260)
Query Neighborhood Hits	426	Target Neighborhood Hits	331	Shared Neighborhood Hits	295
SwissProt Accessions	Q99801, O15465, Q9H2P4, Q9H2P5, Q9H2P6, Q9H2P7, Q9HBG0	Gene names	NKX3-1, NKX3.1, NKX3A
Domain Architecture
Description	Homeobox protein Nkx-3.1.

TLX2_MOUSE
NC score	0.439129 (rank : 72)	θ value	0.00665767 (rank : 110)
Query Neighborhood Hits	426	Target Neighborhood Hits	336	Shared Neighborhood Hits	296
SwissProt Accessions	Q61663	Gene names	Tlx2, Hox11l1, Tlx1l1
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Homeobox TLX-2) (PMUR10F).

TLX2_HUMAN
NC score	0.438751 (rank : 73)	θ value	0.00665767 (rank : 109)
Query Neighborhood Hits	426	Target Neighborhood Hits	352	Shared Neighborhood Hits	300
SwissProt Accessions	O43763, Q9UQ48	Gene names	TLX2, HOX11L1, NCX
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Neural crest homeobox protein).

HMX2_MOUSE
NC score	0.438708 (rank : 74)	θ value	0.365318 (rank : 256)
Query Neighborhood Hits	426	Target Neighborhood Hits	354	Shared Neighborhood Hits	303
SwissProt Accessions	P43687, Q8R1Q2	Gene names	Hmx2, Nkx-5.2, Nkx5-2
Domain Architecture
Description	Homeobox protein HMX2 (Homeobox protein Nkx-5.2).

HXD11_HUMAN
NC score	0.438191 (rank : 75)	θ value	0.00390308 (rank : 85)
Query Neighborhood Hits	426	Target Neighborhood Hits	353	Shared Neighborhood Hits	295
SwissProt Accessions	P31277, Q9NS02	Gene names	HOXD11, HOX4F
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4F).

DLX2_HUMAN
NC score	0.437568 (rank : 76)	θ value	0.365318 (rank : 252)
Query Neighborhood Hits	426	Target Neighborhood Hits	355	Shared Neighborhood Hits	312
SwissProt Accessions	Q07687	Gene names	DLX2
Domain Architecture
Description	Homeobox protein DLX-2.

DBX1_MOUSE
NC score	0.437263 (rank : 77)	θ value	0.0330416 (rank : 154)
Query Neighborhood Hits	426	Target Neighborhood Hits	346	Shared Neighborhood Hits	305
SwissProt Accessions	P52950	Gene names	Dbx1, Dbx
Domain Architecture
Description	Homeobox protein DBX1.

DLX2_MOUSE
NC score	0.435730 (rank : 78)	θ value	0.365318 (rank : 253)
Query Neighborhood Hits	426	Target Neighborhood Hits	352	Shared Neighborhood Hits	311
SwissProt Accessions	P40764	Gene names	Dlx2, Tes-1, Tes1
Domain Architecture
Description	Homeobox protein DLX-2 (Homeobox protein TES-1).

NKX28_MOUSE
NC score	0.435584 (rank : 79)	θ value	0.00869519 (rank : 117)
Query Neighborhood Hits	426	Target Neighborhood Hits	347	Shared Neighborhood Hits	306
SwissProt Accessions	O70584	Gene names	Nkx2-8, Nkx-2.9, Nkx2-9, Nkx2h
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H) (Homeobox protein Nkx-2.9).

ARX_MOUSE
NC score	0.435492 (rank : 80)	θ value	0.00390308 (rank : 80)
Query Neighborhood Hits	426	Target Neighborhood Hits	398	Shared Neighborhood Hits	306
SwissProt Accessions	O35085, Q9QYT4	Gene names	Arx
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

DLX5_HUMAN
NC score	0.434913 (rank : 81)	θ value	0.00869519 (rank : 112)
Query Neighborhood Hits	426	Target Neighborhood Hits	405	Shared Neighborhood Hits	309
SwissProt Accessions	P56178, Q9UPL1	Gene names	DLX5
Domain Architecture
Description	Homeobox protein DLX-5.

HME2_HUMAN
NC score	0.434250 (rank : 82)	θ value	0.813845 (rank : 288)
Query Neighborhood Hits	426	Target Neighborhood Hits	355	Shared Neighborhood Hits	309
SwissProt Accessions	P19622	Gene names	EN2
Domain Architecture
Description	Homeobox protein engrailed-2 (Hu-En-2).

HXD11_MOUSE
NC score	0.433816 (rank : 83)	θ value	0.00390308 (rank : 86)
Query Neighborhood Hits	426	Target Neighborhood Hits	376	Shared Neighborhood Hits	297
SwissProt Accessions	P23813	Gene names	Hoxd11, Hox-4.6, Hoxd-11
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5).

ARX_HUMAN
NC score	0.432799 (rank : 84)	θ value	0.00509761 (rank : 90)
Query Neighborhood Hits	426	Target Neighborhood Hits	401	Shared Neighborhood Hits	308
SwissProt Accessions	Q96QS3	Gene names	ARX
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

HME2_MOUSE
NC score	0.432402 (rank : 85)	θ value	0.813845 (rank : 289)
Query Neighborhood Hits	426	Target Neighborhood Hits	352	Shared Neighborhood Hits	309
SwissProt Accessions	P09066	Gene names	En2, En-2
Domain Architecture
Description	Homeobox protein engrailed-2 (Mo-En-2).

EMX1_HUMAN
NC score	0.432203 (rank : 86)	θ value	0.0252991 (rank : 145)
Query Neighborhood Hits	426	Target Neighborhood Hits	336	Shared Neighborhood Hits	306
SwissProt Accessions	Q04741, Q86XB0	Gene names	EMX1
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty spiracles- like protein 1).

DLX3_MOUSE
NC score	0.431861 (rank : 87)	θ value	0.0961366 (rank : 209)
Query Neighborhood Hits	426	Target Neighborhood Hits	367	Shared Neighborhood Hits	313
SwissProt Accessions	Q64205	Gene names	Dlx3
Domain Architecture
Description	Homeobox protein DLX-3.

HXA11_MOUSE
NC score	0.431829 (rank : 88)	θ value	0.00175202 (rank : 69)
Query Neighborhood Hits	426	Target Neighborhood Hits	327	Shared Neighborhood Hits	286
SwissProt Accessions	P31311, Q3V026	Gene names	Hoxa11, Hox-1.9, Hoxa-11
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1.9).

DLX3_HUMAN
NC score	0.431807 (rank : 89)	θ value	0.0961366 (rank : 208)
Query Neighborhood Hits	426	Target Neighborhood Hits	369	Shared Neighborhood Hits	313
SwissProt Accessions	O60479	Gene names	DLX3
Domain Architecture
Description	Homeobox protein DLX-3.

NKX31_MOUSE
NC score	0.431500 (rank : 90)	θ value	0.0563607 (rank : 185)
Query Neighborhood Hits	426	Target Neighborhood Hits	379	Shared Neighborhood Hits	300
SwissProt Accessions	P97436, O09087	Gene names	Nkx3-1, Nkx-3.1, Nkx3a
Domain Architecture
Description	Homeobox protein Nkx-3.1.

HXA11_HUMAN
NC score	0.429642 (rank : 91)	θ value	0.00390308 (rank : 83)
Query Neighborhood Hits	426	Target Neighborhood Hits	334	Shared Neighborhood Hits	286
SwissProt Accessions	P31270	Gene names	HOXA11, HOX1I
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1I).

DLX5_MOUSE
NC score	0.429382 (rank : 92)	θ value	0.0193708 (rank : 137)
Query Neighborhood Hits	426	Target Neighborhood Hits	434	Shared Neighborhood Hits	309
SwissProt Accessions	P70396, O54876, O54877, O54878, Q9JJ45	Gene names	Dlx5
Domain Architecture
Description	Homeobox protein DLX-5.

EMX2_MOUSE
NC score	0.428977 (rank : 93)	θ value	0.0193708 (rank : 139)
Query Neighborhood Hits	426	Target Neighborhood Hits	340	Shared Neighborhood Hits	305
SwissProt Accessions	Q04744, Q80UE7	Gene names	Emx2, Emx-2
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

EMX2_HUMAN
NC score	0.428944 (rank : 94)	θ value	0.0193708 (rank : 138)
Query Neighborhood Hits	426	Target Neighborhood Hits	341	Shared Neighborhood Hits	305
SwissProt Accessions	Q04743, Q96NN8, Q9BQF4	Gene names	EMX2
Domain Architecture
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

PROP1_MOUSE
NC score	0.428617 (rank : 95)	θ value	0.279714 (rank : 247)
Query Neighborhood Hits	426	Target Neighborhood Hits	361	Shared Neighborhood Hits	310
SwissProt Accessions	P97458	Gene names	Prop1, Prop-1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

LHX5_HUMAN
NC score	0.428288 (rank : 96)	θ value	1.69304e-06 (rank : 34)
Query Neighborhood Hits	426	Target Neighborhood Hits	453	Shared Neighborhood Hits	308
SwissProt Accessions	Q9H2C1	Gene names	LHX5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

HME1_HUMAN
NC score	0.427813 (rank : 97)	θ value	0.62314 (rank : 279)
Query Neighborhood Hits	426	Target Neighborhood Hits	384	Shared Neighborhood Hits	311
SwissProt Accessions	Q05925	Gene names	EN1
Domain Architecture
Description	Homeobox protein engrailed-1 (Hu-En-1).

HME1_MOUSE
NC score	0.427333 (rank : 98)	θ value	0.62314 (rank : 280)
Query Neighborhood Hits	426	Target Neighborhood Hits	397	Shared Neighborhood Hits	309
SwissProt Accessions	P09065	Gene names	En1, En-1
Domain Architecture
Description	Homeobox protein engrailed-1 (Mo-En-1).

CRX_MOUSE
NC score	0.427242 (rank : 99)	θ value	0.0563607 (rank : 172)
Query Neighborhood Hits	426	Target Neighborhood Hits	359	Shared Neighborhood Hits	307
SwissProt Accessions	O54751	Gene names	Crx
Domain Architecture
Description	Cone-rod homeobox protein.

CDX4_HUMAN
NC score	0.427169 (rank : 100)	θ value	0.00134147 (rank : 64)
Query Neighborhood Hits	426	Target Neighborhood Hits	366	Shared Neighborhood Hits	307
SwissProt Accessions	O14627, Q5JS20	Gene names	CDX4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

HLXB9_HUMAN
NC score	0.426520 (rank : 101)	θ value	0.47712 (rank : 271)
Query Neighborhood Hits	426	Target Neighborhood Hits	336	Shared Neighborhood Hits	301
SwissProt Accessions	P50219, Q9Y648	Gene names	HLXB9
Domain Architecture
Description	Homeobox protein HB9.

NKX12_MOUSE
NC score	0.426320 (rank : 102)	θ value	0.62314 (rank : 285)
Query Neighborhood Hits	426	Target Neighborhood Hits	332	Shared Neighborhood Hits	296
SwissProt Accessions	P42580, Q9JHF2, Q9JKW5, Q9JKW6, Q9JKW9, Q9JKX0, Q9JKX1	Gene names	Nkx1-2, Nkx1.1, Sax1
Domain Architecture
Description	NK1 transcription factor-related protein 2 (Homeobox protein SAX-1) (NKX-1.1).

HLXB9_MOUSE
NC score	0.426211 (rank : 103)	θ value	0.47712 (rank : 272)
Query Neighborhood Hits	426	Target Neighborhood Hits	354	Shared Neighborhood Hits	307
SwissProt Accessions	Q9QZW9	Gene names	Hlxb9
Domain Architecture
Description	Homeobox protein HB9.

CRX_HUMAN
NC score	0.426028 (rank : 104)	θ value	0.47712 (rank : 269)
Query Neighborhood Hits	426	Target Neighborhood Hits	360	Shared Neighborhood Hits	309
SwissProt Accessions	O43186	Gene names	CRX, CORD2
Domain Architecture
Description	Cone-rod homeobox protein.

PRRX2_HUMAN
NC score	0.424900 (rank : 105)	θ value	0.0736092 (rank : 199)
Query Neighborhood Hits	426	Target Neighborhood Hits	348	Shared Neighborhood Hits	305
SwissProt Accessions	Q99811, Q9UIB3	Gene names	PRRX2, PMX2, PRX2
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Paired-related homeobox protein 2).

NKX25_HUMAN
NC score	0.423927 (rank : 106)	θ value	0.21417 (rank : 234)
Query Neighborhood Hits	426	Target Neighborhood Hits	338	Shared Neighborhood Hits	307
SwissProt Accessions	P52952	Gene names	NKX2-5, CSX, NKX2.5, NKX2E
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

DLX6_HUMAN
NC score	0.423819 (rank : 107)	θ value	0.21417 (rank : 231)
Query Neighborhood Hits	426	Target Neighborhood Hits	341	Shared Neighborhood Hits	309
SwissProt Accessions	P56179, Q3ZAR6, Q9UPL2	Gene names	DLX6
Domain Architecture
Description	Homeobox protein DLX-6.

HXB2_MOUSE
NC score	0.423319 (rank : 108)	θ value	0.00665767 (rank : 100)
Query Neighborhood Hits	426	Target Neighborhood Hits	350	Shared Neighborhood Hits	301
SwissProt Accessions	P0C1T1	Gene names	Hoxb2, Hox-2.8
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-B2 (Hox-2.8).

LHX5_MOUSE
NC score	0.423316 (rank : 109)	θ value	5.44631e-05 (rank : 39)
Query Neighborhood Hits	426	Target Neighborhood Hits	456	Shared Neighborhood Hits	307
SwissProt Accessions	P61375, P50459	Gene names	Lhx5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

PRRX2_MOUSE
NC score	0.422815 (rank : 110)	θ value	0.0431538 (rank : 169)
Query Neighborhood Hits	426	Target Neighborhood Hits	351	Shared Neighborhood Hits	306
SwissProt Accessions	Q06348, Q61651	Gene names	Prrx2, Prx2, S8
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Homeobox protein S8).

BARH1_MOUSE
NC score	0.422757 (rank : 111)	θ value	0.00134147 (rank : 63)
Query Neighborhood Hits	426	Target Neighborhood Hits	350	Shared Neighborhood Hits	309
SwissProt Accessions	P63157, Q9JK26	Gene names	Barhl1, Bhx1, Mbh2
Domain Architecture	No domain graphic available
Description	BarH-like 1 homeobox protein (Bar-class homeodomain protein MBH2) (BarH-related homeobox protein 1).

BARH1_HUMAN
NC score	0.422658 (rank : 112)	θ value	0.00102713 (rank : 58)
Query Neighborhood Hits	426	Target Neighborhood Hits	373	Shared Neighborhood Hits	311
SwissProt Accessions	Q9BZE3, Q9NY88	Gene names	BARHL1
Domain Architecture
Description	BarH-like 1 homeobox protein.

DLX1_HUMAN
NC score	0.421983 (rank : 113)	θ value	0.62314 (rank : 276)
Query Neighborhood Hits	426	Target Neighborhood Hits	343	Shared Neighborhood Hits	309
SwissProt Accessions	P56177, Q53ZU4, Q8IYB2	Gene names	DLX1
Domain Architecture
Description	Homeobox protein DLX-1.

NKX28_HUMAN
NC score	0.421783 (rank : 114)	θ value	0.0563607 (rank : 184)
Query Neighborhood Hits	426	Target Neighborhood Hits	352	Shared Neighborhood Hits	307
SwissProt Accessions	O15522	Gene names	NKX2-8, NKX-2.8, NKX2G, NKX2H
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H).

HXB1_HUMAN
NC score	0.421637 (rank : 115)	θ value	0.00665767 (rank : 99)
Query Neighborhood Hits	426	Target Neighborhood Hits	356	Shared Neighborhood Hits	299
SwissProt Accessions	P14653	Gene names	HOXB1, HOX2I
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2I).

BARH2_HUMAN
NC score	0.420616 (rank : 116)	θ value	0.0113563 (rank : 120)
Query Neighborhood Hits	426	Target Neighborhood Hits	419	Shared Neighborhood Hits	312
SwissProt Accessions	Q9NY43, Q7Z4N7	Gene names	BARHL2
Domain Architecture
Description	BarH-like 2 homeobox protein.

PRRXL_MOUSE
NC score	0.420396 (rank : 117)	θ value	0.365318 (rank : 264)
Query Neighborhood Hits	426	Target Neighborhood Hits	350	Shared Neighborhood Hits	309
SwissProt Accessions	Q8BYH0, Q8K3F8	Gene names	Prrxl1, Drg11
Domain Architecture	No domain graphic available
Description	Paired-related homeobox protein-like 1 (Dorsal root ganglion 11) (Homeobox protein DRG11).

HXC4_MOUSE
NC score	0.420337 (rank : 118)	θ value	0.00869519 (rank : 113)
Query Neighborhood Hits	426	Target Neighborhood Hits	365	Shared Neighborhood Hits	301
SwissProt Accessions	Q08624	Gene names	Hoxc4, Hox-3.5, Hoxc-4
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3.5).

HXB1_MOUSE
NC score	0.420248 (rank : 119)	θ value	0.0431538 (rank : 165)
Query Neighborhood Hits	426	Target Neighborhood Hits	341	Shared Neighborhood Hits	299
SwissProt Accessions	P17919, Q3ZAY6, Q9CYH3	Gene names	Hoxb1, Hox-2.9, Hoxb-1
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2.9).

DLX1_MOUSE
NC score	0.420081 (rank : 120)	θ value	0.62314 (rank : 277)
Query Neighborhood Hits	426	Target Neighborhood Hits	343	Shared Neighborhood Hits	309
SwissProt Accessions	Q64317	Gene names	Dlx1
Domain Architecture
Description	Homeobox protein DLX-1.

HXA1_MOUSE
NC score	0.419905 (rank : 121)	θ value	0.0431538 (rank : 164)
Query Neighborhood Hits	426	Target Neighborhood Hits	341	Shared Neighborhood Hits	299
SwissProt Accessions	P09022, P15463	Gene names	Hoxa1, Era-1, Hox-1.6, Hoxa-1
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399).

PROP1_HUMAN
NC score	0.418779 (rank : 122)	θ value	0.365318 (rank : 263)
Query Neighborhood Hits	426	Target Neighborhood Hits	354	Shared Neighborhood Hits	310
SwissProt Accessions	O75360	Gene names	PROP1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

CDX4_MOUSE
NC score	0.418511 (rank : 123)	θ value	0.00665767 (rank : 97)
Query Neighborhood Hits	426	Target Neighborhood Hits	378	Shared Neighborhood Hits	305
SwissProt Accessions	Q07424	Gene names	Cdx4, Cdx-4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

PEPP1_HUMAN
NC score	0.418098 (rank : 124)	θ value	3.0926 (rank : 358)
Query Neighborhood Hits	426	Target Neighborhood Hits	338	Shared Neighborhood Hits	304
SwissProt Accessions	Q8NHV9, O95030, Q3SYE0	Gene names	PEPP1, OTEX
Domain Architecture
Description	Paired-like homeobox protein PEPP-1 (Ovary-, testis- and epididymis- expressed gene protein).

NKX32_MOUSE
NC score	0.417943 (rank : 125)	θ value	1.81305 (rank : 324)
Query Neighborhood Hits	426	Target Neighborhood Hits	326	Shared Neighborhood Hits	297
SwissProt Accessions	P97503	Gene names	Bapx1, Nkx-3.2, Nkx3-2, Nkx3b
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

HXB2_HUMAN
NC score	0.417786 (rank : 126)	θ value	0.163984 (rank : 225)
Query Neighborhood Hits	426	Target Neighborhood Hits	367	Shared Neighborhood Hits	303
SwissProt Accessions	P14652, P10913, P17485	Gene names	HOXB2, HOX2H
Domain Architecture
Description	Homeobox protein Hox-B2 (Hox-2H) (Hox-2.8) (K8).

BARH2_MOUSE
NC score	0.416952 (rank : 127)	θ value	0.0113563 (rank : 121)
Query Neighborhood Hits	426	Target Neighborhood Hits	397	Shared Neighborhood Hits	308
SwissProt Accessions	Q8VIB5, Q66L43	Gene names	Barhl2, Barh1, Mbh1
Domain Architecture	No domain graphic available
Description	BarH-like 2 homeobox protein (Bar-class homeodomain protein MBH1) (Homeobox protein B-H1).

HXA1_HUMAN
NC score	0.416724 (rank : 128)	θ value	0.0431538 (rank : 163)
Query Neighborhood Hits	426	Target Neighborhood Hits	334	Shared Neighborhood Hits	298
SwissProt Accessions	P49639, O43363	Gene names	HOXA1, HOX1F
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1F).

NKX22_MOUSE
NC score	0.416321 (rank : 129)	θ value	2.36792 (rank : 332)
Query Neighborhood Hits	426	Target Neighborhood Hits	336	Shared Neighborhood Hits	308
SwissProt Accessions	P42586	Gene names	Nkx2-2, Nkx-2.2, Nkx2b
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

NKX25_MOUSE
NC score	0.415685 (rank : 130)	θ value	0.21417 (rank : 235)
Query Neighborhood Hits	426	Target Neighborhood Hits	347	Shared Neighborhood Hits	307
SwissProt Accessions	P42582, P97335	Gene names	Nkx2-5, Csx, Nkx-2.5, Nkx2e
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

HXD10_HUMAN
NC score	0.415634 (rank : 131)	θ value	0.00298849 (rank : 76)
Query Neighborhood Hits	426	Target Neighborhood Hits	392	Shared Neighborhood Hits	300
SwissProt Accessions	P28358	Gene names	HOXD10, HOX4D
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4D) (Hox-4E).

LHX1_HUMAN
NC score	0.415543 (rank : 132)	θ value	5.44631e-05 (rank : 37)
Query Neighborhood Hits	426	Target Neighborhood Hits	453	Shared Neighborhood Hits	307
SwissProt Accessions	P48742, Q3MIW0	Gene names	LHX1, LIM1
Domain Architecture
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

HXD10_MOUSE
NC score	0.415174 (rank : 133)	θ value	0.00298849 (rank : 77)
Query Neighborhood Hits	426	Target Neighborhood Hits	392	Shared Neighborhood Hits	296
SwissProt Accessions	P28359, Q91WU9	Gene names	Hoxd10, Hox-4.5, Hoxd-10
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4.5) (Hox-5.3).

NKX26_MOUSE
NC score	0.415162 (rank : 134)	θ value	0.0961366 (rank : 214)
Query Neighborhood Hits	426	Target Neighborhood Hits	343	Shared Neighborhood Hits	303
SwissProt Accessions	P43688	Gene names	Nkx2-6, Nkx-2.6, Nkx2f
Domain Architecture
Description	Homeobox protein Nkx-2.6 (Homeobox protein NK-2 homolog F).

NKX32_HUMAN
NC score	0.414918 (rank : 135)	θ value	1.81305 (rank : 323)
Query Neighborhood Hits	426	Target Neighborhood Hits	323	Shared Neighborhood Hits	297
SwissProt Accessions	P78367	Gene names	BAPX1, NKX3B
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

ZFHX2_HUMAN
NC score	0.414663 (rank : 136)	θ value	0.00298849 (rank : 79)
Query Neighborhood Hits	426	Target Neighborhood Hits	1178	Shared Neighborhood Hits	328
SwissProt Accessions	Q9C0A1	Gene names	ZFHX2, KIAA1762
Domain Architecture
Description	Zinc finger homeobox protein 2.

NKX22_HUMAN
NC score	0.414261 (rank : 137)	θ value	2.36792 (rank : 331)
Query Neighborhood Hits	426	Target Neighborhood Hits	342	Shared Neighborhood Hits	308
SwissProt Accessions	O95096	Gene names	NKX2-2, NKX2.2, NKX2B
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

HXB9_HUMAN
NC score	0.413658 (rank : 138)	θ value	0.00102713 (rank : 61)
Query Neighborhood Hits	426	Target Neighborhood Hits	344	Shared Neighborhood Hits	299
SwissProt Accessions	P17482, Q9H1I1	Gene names	HOXB9, HOX2E
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5).

HXB9_MOUSE
NC score	0.412755 (rank : 139)	θ value	0.00102713 (rank : 62)
Query Neighborhood Hits	426	Target Neighborhood Hits	344	Shared Neighborhood Hits	298
SwissProt Accessions	P20615	Gene names	Hoxb9, Hox-2.5, Hoxb-9
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2.5).

LHX1_MOUSE
NC score	0.412445 (rank : 140)	θ value	5.44631e-05 (rank : 38)
Query Neighborhood Hits	426	Target Neighborhood Hits	453	Shared Neighborhood Hits	307
SwissProt Accessions	P63006, P36199	Gene names	Lhx1, Lim-1, Lim1
Domain Architecture	No domain graphic available
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

HXA9_MOUSE
NC score	0.412413 (rank : 141)	θ value	8.40245e-06 (rank : 36)
Query Neighborhood Hits	426	Target Neighborhood Hits	334	Shared Neighborhood Hits	294
SwissProt Accessions	P09631, O70154, O70155	Gene names	Hoxa9, Hox-1.7, Hoxa-9
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1.7).

NKX23_HUMAN
NC score	0.412222 (rank : 142)	θ value	0.813845 (rank : 292)
Query Neighborhood Hits	426	Target Neighborhood Hits	346	Shared Neighborhood Hits	311
SwissProt Accessions	Q8TAU0, Q9NYS6	Gene names	NKX2-3, NKX23, NKX2C
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NKX-2.3) (Homeobox protein NK-2 homolog C).

PITX3_MOUSE
NC score	0.412177 (rank : 143)	θ value	0.0563607 (rank : 189)
Query Neighborhood Hits	426	Target Neighborhood Hits	380	Shared Neighborhood Hits	312
SwissProt Accessions	O35160	Gene names	Pitx3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

HXA9_HUMAN
NC score	0.412095 (rank : 144)	θ value	8.40245e-06 (rank : 35)
Query Neighborhood Hits	426	Target Neighborhood Hits	332	Shared Neighborhood Hits	294
SwissProt Accessions	P31269, O43369, O43429, Q99820	Gene names	HOXA9, HOX1G
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1G).

RX_HUMAN
NC score	0.411757 (rank : 145)	θ value	0.163984 (rank : 230)
Query Neighborhood Hits	426	Target Neighborhood Hits	423	Shared Neighborhood Hits	313
SwissProt Accessions	Q9Y2V3	Gene names	RAX, RX
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

HXA2_MOUSE
NC score	0.411721 (rank : 146)	θ value	0.163984 (rank : 224)
Query Neighborhood Hits	426	Target Neighborhood Hits	338	Shared Neighborhood Hits	296
SwissProt Accessions	P31245, Q149U3, Q920T8	Gene names	Hoxa2, Hox-1.11, Hoxa-2
Domain Architecture
Description	Homeobox protein Hox-A2 (Hox-1.11) (Hox1.11).

BARX1_HUMAN
NC score	0.411450 (rank : 147)	θ value	0.0961366 (rank : 204)
Query Neighborhood Hits	426	Target Neighborhood Hits	326	Shared Neighborhood Hits	297
SwissProt Accessions	Q9HBU1	Gene names	BARX1
Domain Architecture
Description	Homeobox protein BarH-like 1.

BARX1_MOUSE
NC score	0.411108 (rank : 148)	θ value	0.0961366 (rank : 205)
Query Neighborhood Hits	426	Target Neighborhood Hits	324	Shared Neighborhood Hits	297
SwissProt Accessions	Q9ER42, O09066, P70159, Q9ERV2	Gene names	Barx1
Domain Architecture
Description	Homeobox protein BarH-like 1.

CDX1_HUMAN
NC score	0.410985 (rank : 149)	θ value	0.0193708 (rank : 135)
Query Neighborhood Hits	426	Target Neighborhood Hits	382	Shared Neighborhood Hits	298
SwissProt Accessions	P47902, Q4VAU4, Q9NYK8	Gene names	CDX1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

PITX3_HUMAN
NC score	0.410816 (rank : 150)	θ value	0.0330416 (rank : 161)
Query Neighborhood Hits	426	Target Neighborhood Hits	366	Shared Neighborhood Hits	311
SwissProt Accessions	O75364	Gene names	PITX3, PTX3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

TLX3_HUMAN
NC score	0.410593 (rank : 151)	θ value	0.0736092 (rank : 200)
Query Neighborhood Hits	426	Target Neighborhood Hits	403	Shared Neighborhood Hits	299
SwissProt Accessions	O43711, Q96AD3	Gene names	TLX3, HOX11L2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox protein Hox-11L2).

CDX2_MOUSE
NC score	0.410503 (rank : 152)	θ value	0.0736092 (rank : 190)
Query Neighborhood Hits	426	Target Neighborhood Hits	336	Shared Neighborhood Hits	291
SwissProt Accessions	P43241	Gene names	Cdx2, Cdx-2
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2).

HXC13_HUMAN
NC score	0.410244 (rank : 153)	θ value	0.0252991 (rank : 148)
Query Neighborhood Hits	426	Target Neighborhood Hits	336	Shared Neighborhood Hits	300
SwissProt Accessions	P31276, Q96J32, Q9NR24, Q9NYD5	Gene names	HOXC13, HOX3G
Domain Architecture
Description	Homeobox protein Hox-C13 (Hox-3G).

DLX4_MOUSE
NC score	0.410180 (rank : 154)	θ value	0.279714 (rank : 239)
Query Neighborhood Hits	426	Target Neighborhood Hits	352	Shared Neighborhood Hits	304
SwissProt Accessions	P70436, Q3UM51, Q8R4I3	Gene names	Dlx4, Dlx7
Domain Architecture
Description	Homeobox protein DLX-4 (DLX-7).

HXC13_MOUSE
NC score	0.410180 (rank : 155)	θ value	0.0252991 (rank : 149)
Query Neighborhood Hits	426	Target Neighborhood Hits	337	Shared Neighborhood Hits	300
SwissProt Accessions	P50207, Q53Z78, Q920I7	Gene names	Hoxc13, Hoxc-13
Domain Architecture
Description	Homeobox protein Hox-C13.

HXD3_MOUSE
NC score	0.410095 (rank : 156)	θ value	0.00020696 (rank : 42)
Query Neighborhood Hits	426	Target Neighborhood Hits	435	Shared Neighborhood Hits	305
SwissProt Accessions	P09027, Q3UUD3	Gene names	Hoxd3, Hox-4.1, Hoxd-3
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4.1) (Homeobox protein MH-19).

TLX3_MOUSE
NC score	0.409717 (rank : 157)	θ value	0.0736092 (rank : 201)
Query Neighborhood Hits	426	Target Neighborhood Hits	346	Shared Neighborhood Hits	301
SwissProt Accessions	O55144	Gene names	Tlx3, Hox11l2, Rnx, Tlx1l2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox TLX-3) (Homeobox protein Hox-11L2) (Respiratory neuron homeobox protein).

RX_MOUSE
NC score	0.409669 (rank : 158)	θ value	0.0431538 (rank : 170)
Query Neighborhood Hits	426	Target Neighborhood Hits	429	Shared Neighborhood Hits	310
SwissProt Accessions	O35602, O08748	Gene names	Rax, Rx
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

PRRX1_MOUSE
NC score	0.409644 (rank : 159)	θ value	0.125558 (rank : 220)
Query Neighborhood Hits	426	Target Neighborhood Hits	346	Shared Neighborhood Hits	305
SwissProt Accessions	P63013, P43271, Q02810	Gene names	Prrx1, Pmx, Pmx1
Domain Architecture	No domain graphic available
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein mHox) (Homeobox protein K-2).

PRRX1_HUMAN
NC score	0.409561 (rank : 160)	θ value	0.125558 (rank : 219)
Query Neighborhood Hits	426	Target Neighborhood Hits	347	Shared Neighborhood Hits	305
SwissProt Accessions	P54821, O60807	Gene names	PRRX1, PMX1
Domain Architecture
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein PHOX1).

HXB4_HUMAN
NC score	0.409400 (rank : 161)	θ value	0.279714 (rank : 241)
Query Neighborhood Hits	426	Target Neighborhood Hits	376	Shared Neighborhood Hits	298
SwissProt Accessions	P17483, Q9NTA0	Gene names	HOXB4, HOX2F
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2F) (Hox-2.6).

NKX23_MOUSE
NC score	0.409076 (rank : 162)	θ value	0.813845 (rank : 293)
Query Neighborhood Hits	426	Target Neighborhood Hits	340	Shared Neighborhood Hits	311
SwissProt Accessions	P97334, Q9QZ60, Q9WV67	Gene names	Nkx2-3, Nkx-2.3, Nkx2c
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NK-2 homolog C) (Nkx2-C) (Homeobox protein NK-2 homolog 3).

HXA4_HUMAN
NC score	0.408994 (rank : 163)	θ value	0.47712 (rank : 273)
Query Neighborhood Hits	426	Target Neighborhood Hits	370	Shared Neighborhood Hits	296
SwissProt Accessions	Q00056, O43366	Gene names	HOXA4, HOX1D
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4).

OTP_MOUSE
NC score	0.408858 (rank : 164)	θ value	2.36792 (rank : 333)
Query Neighborhood Hits	426	Target Neighborhood Hits	387	Shared Neighborhood Hits	311
SwissProt Accessions	O09113	Gene names	Otp
Domain Architecture
Description	Homeobox protein orthopedia.

GSHI_HUMAN
NC score	0.408746 (rank : 165)	θ value	0.0563607 (rank : 173)
Query Neighborhood Hits	426	Target Neighborhood Hits	314	Shared Neighborhood Hits	291
SwissProt Accessions	Q9H4S2	Gene names	GSH1
Domain Architecture
Description	Homeobox protein GSH-1.

TLX1_HUMAN
NC score	0.408564 (rank : 166)	θ value	0.279714 (rank : 248)
Query Neighborhood Hits	426	Target Neighborhood Hits	347	Shared Neighborhood Hits	301
SwissProt Accessions	P31314, O75699, Q9HCA0	Gene names	TLX1, HOX11, TCL3
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (TCL-3 proto-oncogene).

TLX1_MOUSE
NC score	0.408198 (rank : 167)	θ value	0.279714 (rank : 249)
Query Neighborhood Hits	426	Target Neighborhood Hits	347	Shared Neighborhood Hits	298
SwissProt Accessions	P43345	Gene names	Tlx1, Hox11, Tlx-1
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (Homeobox TLX-1).

HXA2_HUMAN
NC score	0.408013 (rank : 168)	θ value	0.163984 (rank : 223)
Query Neighborhood Hits	426	Target Neighborhood Hits	370	Shared Neighborhood Hits	296
SwissProt Accessions	O43364	Gene names	HOXA2
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A2.

HXB4_MOUSE
NC score	0.407941 (rank : 169)	θ value	0.279714 (rank : 242)
Query Neighborhood Hits	426	Target Neighborhood Hits	375	Shared Neighborhood Hits	296
SwissProt Accessions	P10284, Q3UZB4, Q4VBG0	Gene names	Hoxb4, Hox-2.6, Hoxb-4
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2.6).

CDX1_MOUSE
NC score	0.407294 (rank : 170)	θ value	0.0193708 (rank : 136)
Query Neighborhood Hits	426	Target Neighborhood Hits	379	Shared Neighborhood Hits	292
SwissProt Accessions	P18111, Q8VCF7	Gene names	Cdx1, Cdx-1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

GSHI_MOUSE
NC score	0.407290 (rank : 171)	θ value	0.0563607 (rank : 174)
Query Neighborhood Hits	426	Target Neighborhood Hits	313	Shared Neighborhood Hits	289
SwissProt Accessions	P31315	Gene names	Gsh1, Gsh-1
Domain Architecture
Description	Homeobox protein GSH-1.

BARX2_HUMAN
NC score	0.406623 (rank : 172)	θ value	1.81305 (rank : 316)
Query Neighborhood Hits	426	Target Neighborhood Hits	387	Shared Neighborhood Hits	305
SwissProt Accessions	Q9UMQ3, O43518	Gene names	BARX2
Domain Architecture
Description	Homeobox protein BarH-like 2.

HXC4_HUMAN
NC score	0.406324 (rank : 173)	θ value	0.0252991 (rank : 150)
Query Neighborhood Hits	426	Target Neighborhood Hits	361	Shared Neighborhood Hits	301
SwissProt Accessions	P09017	Gene names	HOXC4, HOX3E
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3E) (CP19).

HXC10_MOUSE
NC score	0.406273 (rank : 174)	θ value	0.000786445 (rank : 55)
Query Neighborhood Hits	426	Target Neighborhood Hits	417	Shared Neighborhood Hits	292
SwissProt Accessions	P31257, P31312, Q7TMT7	Gene names	Hoxc10, Hox-3.6, Hoxc-10
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C10 (Hox-3.6).

OTX1_HUMAN
NC score	0.406003 (rank : 175)	θ value	0.0563607 (rank : 186)
Query Neighborhood Hits	426	Target Neighborhood Hits	379	Shared Neighborhood Hits	313
SwissProt Accessions	P32242, Q53TG6	Gene names	OTX1
Domain Architecture
Description	Homeobox protein OTX1.

HXC10_HUMAN
NC score	0.405785 (rank : 176)	θ value	0.000786445 (rank : 54)
Query Neighborhood Hits	426	Target Neighborhood Hits	417	Shared Neighborhood Hits	294
SwissProt Accessions	Q9NYD6, O15219, O15220, Q9BVD5	Gene names	HOXC10
Domain Architecture
Description	Homeobox protein Hox-C10.

BARX2_MOUSE
NC score	0.405530 (rank : 177)	θ value	5.27518 (rank : 375)
Query Neighborhood Hits	426	Target Neighborhood Hits	335	Shared Neighborhood Hits	302
SwissProt Accessions	O08686	Gene names	Barx2
Domain Architecture
Description	Homeobox protein BarH-like 2.

CDX2_HUMAN
NC score	0.405331 (rank : 178)	θ value	0.0148317 (rank : 130)
Query Neighborhood Hits	426	Target Neighborhood Hits	330	Shared Neighborhood Hits	286
SwissProt Accessions	Q99626, O00503, Q969L8	Gene names	CDX2, CDX3
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2) (CDX-3).

NKX24_HUMAN
NC score	0.405293 (rank : 179)	θ value	1.38821 (rank : 310)
Query Neighborhood Hits	426	Target Neighborhood Hits	366	Shared Neighborhood Hits	311
SwissProt Accessions	Q9H2Z4	Gene names	NKX2-4, NKX2D
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

HXD3_HUMAN
NC score	0.405217 (rank : 180)	θ value	0.00035302 (rank : 45)
Query Neighborhood Hits	426	Target Neighborhood Hits	433	Shared Neighborhood Hits	300
SwissProt Accessions	P31249, Q99955, Q9BSC5	Gene names	HOXD3, HOX4A
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4A).

HXA4_MOUSE
NC score	0.404267 (rank : 181)	θ value	0.365318 (rank : 257)
Query Neighborhood Hits	426	Target Neighborhood Hits	379	Shared Neighborhood Hits	291
SwissProt Accessions	P06798, Q61684, Q64388, Q8BPE6	Gene names	Hoxa4, Hox-1.4, Hoxa-4
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1.4) (Homeobox protein MH-3).

PAX4_HUMAN
NC score	0.404164 (rank : 182)	θ value	0.0113563 (rank : 128)
Query Neighborhood Hits	426	Target Neighborhood Hits	367	Shared Neighborhood Hits	314
SwissProt Accessions	O43316, O95161, Q6B0H0	Gene names	PAX4
Domain Architecture
Description	Paired box protein Pax-4.

OTX1_MOUSE
NC score	0.403769 (rank : 183)	θ value	0.0431538 (rank : 168)
Query Neighborhood Hits	426	Target Neighborhood Hits	372	Shared Neighborhood Hits	310
SwissProt Accessions	P80205	Gene names	Otx1, Otx-1
Domain Architecture
Description	Homeobox protein OTX1.

HXC9_MOUSE
NC score	0.403462 (rank : 184)	θ value	0.00134147 (rank : 66)
Query Neighborhood Hits	426	Target Neighborhood Hits	338	Shared Neighborhood Hits	293
SwissProt Accessions	P09633	Gene names	Hoxc9, Hox-3.2, Hoxc-9
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3.2).

HXC9_HUMAN
NC score	0.403345 (rank : 185)	θ value	0.00134147 (rank : 65)
Query Neighborhood Hits	426	Target Neighborhood Hits	339	Shared Neighborhood Hits	293
SwissProt Accessions	P31274, Q9H1I0	Gene names	HOXC9, HOX3B
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3B).

PAX4_MOUSE
NC score	0.403343 (rank : 186)	θ value	0.0193708 (rank : 144)
Query Neighborhood Hits	426	Target Neighborhood Hits	370	Shared Neighborhood Hits	313
SwissProt Accessions	P32115, P97341, Q9QUR1, Q9R091	Gene names	Pax4, Pax-4
Domain Architecture
Description	Paired box protein Pax-4.

HXB8_MOUSE
NC score	0.402907 (rank : 187)	θ value	0.0736092 (rank : 195)
Query Neighborhood Hits	426	Target Neighborhood Hits	325	Shared Neighborhood Hits	296
SwissProt Accessions	P09632	Gene names	Hoxb8, Hox-2.4, Hoxb-8
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2.4).

HXB8_HUMAN
NC score	0.402813 (rank : 188)	θ value	0.0736092 (rank : 194)
Query Neighborhood Hits	426	Target Neighborhood Hits	324	Shared Neighborhood Hits	295
SwissProt Accessions	P17481, Q9H1I2	Gene names	HOXB8, HOX2D
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4).

HXD9_HUMAN
NC score	0.402701 (rank : 189)	θ value	0.00665767 (rank : 101)
Query Neighborhood Hits	426	Target Neighborhood Hits	352	Shared Neighborhood Hits	294
SwissProt Accessions	P28356	Gene names	HOXD9, HOX4C
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2).

VSX1_HUMAN
NC score	0.402469 (rank : 190)	θ value	0.0736092 (rank : 202)
Query Neighborhood Hits	426	Target Neighborhood Hits	344	Shared Neighborhood Hits	305
SwissProt Accessions	Q9NZR4, Q5TF40, Q5TF41, Q9HCU3, Q9NU27	Gene names	VSX1, RINX
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

ALX3_MOUSE
NC score	0.402433 (rank : 191)	θ value	0.47712 (rank : 267)
Query Neighborhood Hits	426	Target Neighborhood Hits	386	Shared Neighborhood Hits	311
SwissProt Accessions	O70137	Gene names	Alx3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

PITX2_MOUSE
NC score	0.402350 (rank : 192)	θ value	0.0563607 (rank : 188)
Query Neighborhood Hits	426	Target Neighborhood Hits	383	Shared Neighborhood Hits	313
SwissProt Accessions	P97474, O08646, O70336, P97933, Q9JLA0, Q9QXB8, Q9R1V9, Q9Z141	Gene names	Pitx2, Arp1, Brx1, Otlx2, Ptx2, Rgs
Domain Architecture
Description	Pituitary homeobox 2 (Orthodenticle-like homeobox 2) (Solurshin) (ALL1-responsive protein ARP1) (BRX1 homeoprotein) (Paired-like homeodomain transcription factor Munc 30).

ALX4_HUMAN
NC score	0.401883 (rank : 193)	θ value	1.81305 (rank : 315)
Query Neighborhood Hits	426	Target Neighborhood Hits	394	Shared Neighborhood Hits	313
SwissProt Accessions	Q9H161, Q96JN7, Q9H198, Q9HAY9	Gene names	ALX4, KIAA1788
Domain Architecture
Description	Homeobox protein aristaless-like 4.

PITX2_HUMAN
NC score	0.401513 (rank : 194)	θ value	0.0563607 (rank : 187)
Query Neighborhood Hits	426	Target Neighborhood Hits	381	Shared Neighborhood Hits	313
SwissProt Accessions	Q99697, O60578, O60579, O60580, Q9BY17	Gene names	PITX2, ARP1, RGS, RIEG, RIEG1
Domain Architecture
Description	Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription factor) (Solurshin) (ALL1-responsive protein ARP1).

NKX24_MOUSE
NC score	0.401214 (rank : 195)	θ value	1.38821 (rank : 311)
Query Neighborhood Hits	426	Target Neighborhood Hits	356	Shared Neighborhood Hits	308
SwissProt Accessions	Q9EQM3, Q9EQM4	Gene names	Nkx2-4, Nkx2d
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

ALX3_HUMAN
NC score	0.400974 (rank : 196)	θ value	0.47712 (rank : 266)
Query Neighborhood Hits	426	Target Neighborhood Hits	380	Shared Neighborhood Hits	311
SwissProt Accessions	O95076, O95075	Gene names	ALX3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

GSH2_HUMAN
NC score	0.399943 (rank : 197)	θ value	0.0961366 (rank : 210)
Query Neighborhood Hits	426	Target Neighborhood Hits	324	Shared Neighborhood Hits	292
SwissProt Accessions	Q9BZM3	Gene names	GSH2
Domain Architecture
Description	Homeobox protein GSH-2.

GSH2_MOUSE
NC score	0.399550 (rank : 198)	θ value	0.0736092 (rank : 193)
Query Neighborhood Hits	426	Target Neighborhood Hits	319	Shared Neighborhood Hits	291
SwissProt Accessions	P31316	Gene names	Gsh2, Gsh-2
Domain Architecture
Description	Homeobox protein GSH-2.

HXA13_HUMAN
NC score	0.399246 (rank : 199)	θ value	0.0113563 (rank : 123)
Query Neighborhood Hits	426	Target Neighborhood Hits	353	Shared Neighborhood Hits	298
SwissProt Accessions	P31271, O43371	Gene names	HOXA13, HOX1J
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1J).

HXD1_MOUSE
NC score	0.399084 (rank : 200)	θ value	0.00228821 (rank : 74)
Query Neighborhood Hits	426	Target Neighborhood Hits	381	Shared Neighborhood Hits	301
SwissProt Accessions	Q01822	Gene names	Hoxd1, Hox-4.9, Hoxd-1
Domain Architecture
Description	Homeobox protein Hox-D1 (Hox-4.9).

HXA13_MOUSE
NC score	0.398968 (rank : 201)	θ value	0.0113563 (rank : 124)
Query Neighborhood Hits	426	Target Neighborhood Hits	351	Shared Neighborhood Hits	298
SwissProt Accessions	Q62424	Gene names	Hoxa13, Hox-1.10
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1.10).

HXD9_MOUSE
NC score	0.398637 (rank : 202)	θ value	0.00665767 (rank : 102)
Query Neighborhood Hits	426	Target Neighborhood Hits	359	Shared Neighborhood Hits	297
SwissProt Accessions	P28357, Q3UYS2	Gene names	Hoxd9, Hox-4.4, Hoxd-9
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4.4) (Hox-5.2).

VSX1_MOUSE
NC score	0.398600 (rank : 203)	θ value	0.0736092 (rank : 203)
Query Neighborhood Hits	426	Target Neighborhood Hits	356	Shared Neighborhood Hits	303
SwissProt Accessions	Q91V10	Gene names	Vsx1, Rinx
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

HXA3_MOUSE
NC score	0.398165 (rank : 204)	θ value	0.00228821 (rank : 73)
Query Neighborhood Hits	426	Target Neighborhood Hits	558	Shared Neighborhood Hits	322
SwissProt Accessions	P02831, Q4V9Z8, Q61197	Gene names	Hoxa3, Hox-1.5, Hoxa-3
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1.5) (MO-10).

SHOX2_HUMAN
NC score	0.397194 (rank : 205)	θ value	3.0926 (rank : 359)
Query Neighborhood Hits	426	Target Neighborhood Hits	353	Shared Neighborhood Hits	304
SwissProt Accessions	O60902, O60465, O60467, O60903	Gene names	SHOX2, OG12X, SHOT
Domain Architecture
Description	Short stature homeobox protein 2 (Paired-related homeobox protein SHOT) (Homeobox protein Og12X).

IPF1_MOUSE
NC score	0.397154 (rank : 206)	θ value	0.125558 (rank : 218)
Query Neighborhood Hits	426	Target Neighborhood Hits	340	Shared Neighborhood Hits	294
SwissProt Accessions	P52946	Gene names	Ipf1, Pdx1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Islet/duodenum homeobox 1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Pancreas/duodenum homeobox 1).

IPF1_HUMAN
NC score	0.396821 (rank : 207)	θ value	0.125558 (rank : 217)
Query Neighborhood Hits	426	Target Neighborhood Hits	330	Shared Neighborhood Hits	290
SwissProt Accessions	P52945, O60594	Gene names	IPF1, PDX1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Pancreas/duodenum homeobox 1) (PDX- 1) (Islet/duodenum homeobox-1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Insulin upstream factor 1) (IUF-1) (Glucose- sensitive factor) (GSF).

ALX4_MOUSE
NC score	0.396650 (rank : 208)	θ value	1.38821 (rank : 307)
Query Neighborhood Hits	426	Target Neighborhood Hits	369	Shared Neighborhood Hits	311
SwissProt Accessions	O35137	Gene names	Alx4
Domain Architecture
Description	Homeobox protein aristaless-like 4 (ALX-4).

HXA3_HUMAN
NC score	0.396649 (rank : 209)	θ value	0.0193708 (rank : 141)
Query Neighborhood Hits	426	Target Neighborhood Hits	535	Shared Neighborhood Hits	322
SwissProt Accessions	O43365	Gene names	HOXA3, HOX1E
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1E).

HXA10_MOUSE
NC score	0.396333 (rank : 210)	θ value	0.00228821 (rank : 72)
Query Neighborhood Hits	426	Target Neighborhood Hits	365	Shared Neighborhood Hits	287
SwissProt Accessions	P31310, Q80Y22	Gene names	Hoxa10, Hox-1.8, Hoxa-10
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1.8).

HXA10_HUMAN
NC score	0.395843 (rank : 211)	θ value	0.00390308 (rank : 82)
Query Neighborhood Hits	426	Target Neighborhood Hits	334	Shared Neighborhood Hits	281
SwissProt Accessions	P31260, O43370, O43605, Q15949	Gene names	HOXA10, HOX1H
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL).

HXD1_HUMAN
NC score	0.395667 (rank : 212)	θ value	0.0563607 (rank : 180)
Query Neighborhood Hits	426	Target Neighborhood Hits	337	Shared Neighborhood Hits	294
SwissProt Accessions	Q9GZZ0	Gene names	HOXD1
Domain Architecture
Description	Homeobox protein Hox-D1.

SHOX2_MOUSE
NC score	0.395155 (rank : 213)	θ value	3.0926 (rank : 360)
Query Neighborhood Hits	426	Target Neighborhood Hits	348	Shared Neighborhood Hits	305
SwissProt Accessions	P70390, P70369	Gene names	Shox2, Og12x, Prx3
Domain Architecture
Description	Short stature homeobox protein 2 (Homeobox protein Og12X) (OG-12) (Paired family homeodomain protein Prx3).

PITX1_MOUSE
NC score	0.395149 (rank : 214)	θ value	0.163984 (rank : 229)
Query Neighborhood Hits	426	Target Neighborhood Hits	362	Shared Neighborhood Hits	313
SwissProt Accessions	P70314, O54742, P70427	Gene names	Pitx1, Bft, Potx, Ptx1
Domain Architecture
Description	Pituitary homeobox 1 (Homeobox protein P-OTX) (Pituitary OTX-related factor) (Hindlimb expressed homeobox protein backfoot) (Ptx1).

SHOX_HUMAN
NC score	0.394014 (rank : 215)	θ value	3.0926 (rank : 361)
Query Neighborhood Hits	426	Target Neighborhood Hits	363	Shared Neighborhood Hits	305
SwissProt Accessions	O15266, O00412, O00413, O15267	Gene names	SHOX, PHOG
Domain Architecture
Description	Short stature homeobox protein (Short stature homeobox-containing protein) (Pseudoautosomal homeobox-containing osteogenic protein).

DLX4_HUMAN
NC score	0.393732 (rank : 216)	θ value	1.81305 (rank : 317)
Query Neighborhood Hits	426	Target Neighborhood Hits	350	Shared Neighborhood Hits	304
SwissProt Accessions	Q92988, O60480, Q13265, Q6PJK0, Q9HBE0	Gene names	DLX4, BP1, DLX7, DLX8
Domain Architecture	No domain graphic available
Description	Homeobox protein DLX-4 (DLX-7) (DLX-8) (Beta protein 1).

PITX1_HUMAN
NC score	0.393290 (rank : 217)	θ value	0.163984 (rank : 228)
Query Neighborhood Hits	426	Target Neighborhood Hits	353	Shared Neighborhood Hits	310
SwissProt Accessions	P78337, O14677, O60425, Q9BTI5	Gene names	PITX1, BFT, PTX1
Domain Architecture
Description	Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot).

HXD8_HUMAN
NC score	0.392249 (rank : 218)	θ value	0.163984 (rank : 226)
Query Neighborhood Hits	426	Target Neighborhood Hits	338	Shared Neighborhood Hits	296
SwissProt Accessions	P13378	Gene names	HOXD8, HOX4E
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4).

HXB13_HUMAN
NC score	0.391132 (rank : 219)	θ value	0.0252991 (rank : 146)
Query Neighborhood Hits	426	Target Neighborhood Hits	377	Shared Neighborhood Hits	299
SwissProt Accessions	Q92826, Q96QM4, Q99810	Gene names	HOXB13
Domain Architecture
Description	Homeobox protein Hox-B13.

NKX61_HUMAN
NC score	0.390544 (rank : 220)	θ value	0.365318 (rank : 261)
Query Neighborhood Hits	426	Target Neighborhood Hits	431	Shared Neighborhood Hits	310
SwissProt Accessions	P78426	Gene names	NKX6-1, NKX6A
Domain Architecture
Description	Homeobox protein Nkx-6.1.

NKX61_MOUSE
NC score	0.390233 (rank : 221)	θ value	0.365318 (rank : 262)
Query Neighborhood Hits	426	Target Neighborhood Hits	439	Shared Neighborhood Hits	311
SwissProt Accessions	Q99MA9, Q9ERQ7	Gene names	Nkx6-1, Nkx6.1, Nkx6a
Domain Architecture
Description	Homeobox protein Nkx-6.1.

HXD4_HUMAN
NC score	0.389821 (rank : 222)	θ value	0.47712 (rank : 274)
Query Neighborhood Hits	426	Target Neighborhood Hits	337	Shared Neighborhood Hits	290
SwissProt Accessions	P09016, Q96AU0	Gene names	HOXD4, HOX4B
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4B) (Hox-5.1) (HHO.C13).

LHX3_MOUSE
NC score	0.389628 (rank : 223)	θ value	0.00869519 (rank : 115)
Query Neighborhood Hits	426	Target Neighborhood Hits	451	Shared Neighborhood Hits	312
SwissProt Accessions	P50481, Q61800, Q61801	Gene names	Lhx3, Lim-3, Lim3, Plim
Domain Architecture
Description	LIM/homeobox protein Lhx3 (Homeobox protein LIM-3) (Homeobox protein P-LIM) (LIM homeobox protein 3).

HXD8_MOUSE
NC score	0.389625 (rank : 224)	θ value	0.163984 (rank : 227)
Query Neighborhood Hits	426	Target Neighborhood Hits	333	Shared Neighborhood Hits	295
SwissProt Accessions	P23463	Gene names	Hoxd8, Hox-4.3, Hoxd-8
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4).

HXB13_MOUSE
NC score	0.389194 (rank : 225)	θ value	0.0563607 (rank : 177)
Query Neighborhood Hits	426	Target Neighborhood Hits	384	Shared Neighborhood Hits	295
SwissProt Accessions	P70321, Q80Y12	Gene names	Hoxb13
Domain Architecture
Description	Homeobox protein Hox-B13.

HXB3_MOUSE
NC score	0.388955 (rank : 226)	θ value	0.0563607 (rank : 179)
Query Neighborhood Hits	426	Target Neighborhood Hits	493	Shared Neighborhood Hits	300
SwissProt Accessions	P09026, P10285, Q4PJ06, Q61680	Gene names	Hoxb3, Hox-2.7, Hoxb-3
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2.7) (Homeobox protein MH-23).

LHX3_HUMAN
NC score	0.388707 (rank : 227)	θ value	0.00869519 (rank : 114)
Query Neighborhood Hits	426	Target Neighborhood Hits	474	Shared Neighborhood Hits	317
SwissProt Accessions	Q9UBR4, Q9NZB5, Q9P0I8, Q9P0I9	Gene names	LHX3
Domain Architecture
Description	LIM/homeobox protein Lhx3.

TITF1_MOUSE
NC score	0.387960 (rank : 228)	θ value	1.38821 (rank : 313)
Query Neighborhood Hits	426	Target Neighborhood Hits	335	Shared Neighborhood Hits	308
SwissProt Accessions	P50220	Gene names	Titf1, Nkx-2.1, Nkx2-1, Ttf1
Domain Architecture	No domain graphic available
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1).

HHEX_MOUSE
NC score	0.387143 (rank : 229)	θ value	0.365318 (rank : 254)
Query Neighborhood Hits	426	Target Neighborhood Hits	350	Shared Neighborhood Hits	297
SwissProt Accessions	P43120	Gene names	Hhex, Prhx
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

OTX2_MOUSE
NC score	0.386792 (rank : 230)	θ value	5.27518 (rank : 389)
Query Neighborhood Hits	426	Target Neighborhood Hits	345	Shared Neighborhood Hits	302
SwissProt Accessions	P80206	Gene names	Otx2, Otx-2
Domain Architecture
Description	Homeobox protein OTX2.

TITF1_HUMAN
NC score	0.386595 (rank : 231)	θ value	1.38821 (rank : 312)
Query Neighborhood Hits	426	Target Neighborhood Hits	332	Shared Neighborhood Hits	308
SwissProt Accessions	P43699, O14954, O14955, Q9BRJ8	Gene names	TITF1, NKX2-1, NKX2A, TTF1
Domain Architecture
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1) (Homeobox protein NK-2 homolog A).

HHEX_HUMAN
NC score	0.386487 (rank : 232)	θ value	0.47712 (rank : 270)
Query Neighborhood Hits	426	Target Neighborhood Hits	358	Shared Neighborhood Hits	296
SwissProt Accessions	Q03014	Gene names	HHEX, HEX, PRH, PRHX
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

HXD4_MOUSE
NC score	0.386470 (rank : 233)	θ value	0.47712 (rank : 275)
Query Neighborhood Hits	426	Target Neighborhood Hits	339	Shared Neighborhood Hits	288
SwissProt Accessions	P10628, P97451, Q3UXL6	Gene names	Hoxd4, Hox-4.2, Hoxd-4
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4.2) (Hox-5.1).

OTX2_HUMAN
NC score	0.386267 (rank : 234)	θ value	5.27518 (rank : 388)
Query Neighborhood Hits	426	Target Neighborhood Hits	341	Shared Neighborhood Hits	299
SwissProt Accessions	P32243, Q6GTV3, Q9HAW3, Q9P2R1	Gene names	OTX2
Domain Architecture
Description	Homeobox protein OTX2.

HLX1_MOUSE
NC score	0.385533 (rank : 235)	θ value	3.0926 (rank : 347)
Query Neighborhood Hits	426	Target Neighborhood Hits	362	Shared Neighborhood Hits	300
SwissProt Accessions	Q61670	Gene names	Hlx1, Hlx
Domain Architecture
Description	Homeobox protein HLX1.

HXC5_HUMAN
NC score	0.384057 (rank : 236)	θ value	0.0961366 (rank : 212)
Query Neighborhood Hits	426	Target Neighborhood Hits	316	Shared Neighborhood Hits	285
SwissProt Accessions	Q00444	Gene names	HOXC5, HOX3D
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3D) (CP11).

HXC5_MOUSE
NC score	0.383768 (rank : 237)	θ value	0.0961366 (rank : 213)
Query Neighborhood Hits	426	Target Neighborhood Hits	316	Shared Neighborhood Hits	284
SwissProt Accessions	P32043, Q8BJW4	Gene names	Hoxc5, Hox-3.4, Hoxc-5
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3.4) (Hox-6.2).

HLX1_HUMAN
NC score	0.383764 (rank : 238)	θ value	3.0926 (rank : 346)
Query Neighborhood Hits	426	Target Neighborhood Hits	370	Shared Neighborhood Hits	297
SwissProt Accessions	Q14774, Q15988	Gene names	HLX1
Domain Architecture
Description	Homeobox protein HLX1 (Homeobox protein HB24).

CART1_HUMAN
NC score	0.383671 (rank : 239)	θ value	0.813845 (rank : 286)
Query Neighborhood Hits	426	Target Neighborhood Hits	348	Shared Neighborhood Hits	304
SwissProt Accessions	Q15699, Q546C8, Q96FH4	Gene names	CART1
Domain Architecture
Description	Cartilage homeoprotein 1 (CART-1).

HXB3_HUMAN
NC score	0.383325 (rank : 240)	θ value	0.0563607 (rank : 178)
Query Neighborhood Hits	426	Target Neighborhood Hits	559	Shared Neighborhood Hits	305
SwissProt Accessions	P14651, O95615, P17484	Gene names	HOXB3, HOX2G
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7).

HXD13_HUMAN
NC score	0.383067 (rank : 241)	θ value	0.0113563 (rank : 125)
Query Neighborhood Hits	426	Target Neighborhood Hits	332	Shared Neighborhood Hits	296
SwissProt Accessions	P35453	Gene names	HOXD13, HOX4I
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4I).

HXD13_MOUSE
NC score	0.382821 (rank : 242)	θ value	0.0113563 (rank : 126)
Query Neighborhood Hits	426	Target Neighborhood Hits	324	Shared Neighborhood Hits	293
SwissProt Accessions	P70217, Q2VPB0, Q2VPB1, Q64177	Gene names	Hoxd13, Hox-4.8
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4.8).

LHX4_HUMAN
NC score	0.382056 (rank : 243)	θ value	0.00665767 (rank : 103)
Query Neighborhood Hits	426	Target Neighborhood Hits	455	Shared Neighborhood Hits	315
SwissProt Accessions	Q969G2, Q8NHE0, Q8TCJ1, Q8WWX2, Q969W2	Gene names	LHX4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

LHX4_MOUSE
NC score	0.382013 (rank : 244)	θ value	0.00665767 (rank : 104)
Query Neighborhood Hits	426	Target Neighborhood Hits	457	Shared Neighborhood Hits	315
SwissProt Accessions	P53776, O08916, Q9R280	Gene names	Lhx4, Gsh-4, Gsh4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

PHX2A_MOUSE
NC score	0.380343 (rank : 245)	θ value	2.36792 (rank : 336)
Query Neighborhood Hits	426	Target Neighborhood Hits	338	Shared Neighborhood Hits	295
SwissProt Accessions	Q62066	Gene names	Phox2a, Arix, Phox2, Pmx2, Pmx2a
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (PHOX2A homeodomain protein) (Aristaless homeobox protein homolog).

HXA5_MOUSE
NC score	0.379981 (rank : 246)	θ value	0.21417 (rank : 233)
Query Neighborhood Hits	426	Target Neighborhood Hits	338	Shared Neighborhood Hits	289
SwissProt Accessions	P09021, Q91VQ5	Gene names	Hoxa5, Hox-1.3, Hoxa-5
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1.3) (M2).

HXA5_HUMAN
NC score	0.379671 (rank : 247)	θ value	0.21417 (rank : 232)
Query Neighborhood Hits	426	Target Neighborhood Hits	336	Shared Neighborhood Hits	291
SwissProt Accessions	P20719, O43367, Q96CY6	Gene names	HOXA5, HOX1C
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1C).

PHX2A_HUMAN
NC score	0.379655 (rank : 248)	θ value	2.36792 (rank : 335)
Query Neighborhood Hits	426	Target Neighborhood Hits	345	Shared Neighborhood Hits	294
SwissProt Accessions	O14813, Q8IVZ2	Gene names	PHOX2A, ARIX, PMX2A
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (Aristaless homeobox protein homolog) (ARIX1 homeodomain protein).

CART1_MOUSE
NC score	0.379193 (rank : 249)	θ value	2.36792 (rank : 325)
Query Neighborhood Hits	426	Target Neighborhood Hits	344	Shared Neighborhood Hits	303
SwissProt Accessions	Q8C8B0, Q8C370	Gene names	Cart1
Domain Architecture	No domain graphic available
Description	Cartilage homeoprotein 1 (CART-1).

CHX10_MOUSE
NC score	0.378946 (rank : 250)	θ value	0.365318 (rank : 251)
Query Neighborhood Hits	426	Target Neighborhood Hits	340	Shared Neighborhood Hits	305
SwissProt Accessions	Q61412	Gene names	Chx10, Vsx2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

CHX10_HUMAN
NC score	0.378696 (rank : 251)	θ value	0.365318 (rank : 250)
Query Neighborhood Hits	426	Target Neighborhood Hits	340	Shared Neighborhood Hits	303
SwissProt Accessions	P58304	Gene names	CHX10, VSX2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

HXB7_MOUSE
NC score	0.377025 (rank : 252)	θ value	0.0193708 (rank : 142)
Query Neighborhood Hits	426	Target Neighborhood Hits	314	Shared Neighborhood Hits	288
SwissProt Accessions	P09024, Q3UW15	Gene names	Hoxb7, Hox-2.3, Hoxb-7
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2.3) (MUB1) (Homeobox protein MH-22B).

HXC8_MOUSE
NC score	0.376895 (rank : 253)	θ value	0.0431538 (rank : 167)
Query Neighborhood Hits	426	Target Neighborhood Hits	327	Shared Neighborhood Hits	290
SwissProt Accessions	P09025	Gene names	Hoxc8, Hox-3.1, Hoxc-8
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3.1) (M31).

HXC8_HUMAN
NC score	0.376890 (rank : 254)	θ value	0.0431538 (rank : 166)
Query Neighborhood Hits	426	Target Neighborhood Hits	327	Shared Neighborhood Hits	290
SwissProt Accessions	P31273, O15221, O15362	Gene names	HOXC8, HOX3A
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3A).

HXB7_HUMAN
NC score	0.376116 (rank : 255)	θ value	0.0252991 (rank : 147)
Query Neighborhood Hits	426	Target Neighborhood Hits	311	Shared Neighborhood Hits	288
SwissProt Accessions	P09629, Q15957	Gene names	HOXB7, HOX2C
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2C) (HHO.C1).

PHX2B_HUMAN
NC score	0.375074 (rank : 256)	θ value	2.36792 (rank : 337)
Query Neighborhood Hits	426	Target Neighborhood Hits	407	Shared Neighborhood Hits	302
SwissProt Accessions	Q99453, Q6PJD9	Gene names	PHOX2B, PMX2B
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

PHX2B_MOUSE
NC score	0.375074 (rank : 257)	θ value	2.36792 (rank : 338)
Query Neighborhood Hits	426	Target Neighborhood Hits	407	Shared Neighborhood Hits	302
SwissProt Accessions	O35690	Gene names	Phox2b, Pmx2b
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

DUX4_HUMAN
NC score	0.373005 (rank : 258)	θ value	5.27518 (rank : 378)
Query Neighborhood Hits	426	Target Neighborhood Hits	403	Shared Neighborhood Hits	305
SwissProt Accessions	Q9UBX2	Gene names	DUX4, DUX10
Domain Architecture	No domain graphic available
Description	Double homeobox protein 4 (Double homeobox protein 10) (Double homeobox protein 4/10).

HXB5_HUMAN
NC score	0.370418 (rank : 259)	θ value	0.279714 (rank : 243)
Query Neighborhood Hits	426	Target Neighborhood Hits	332	Shared Neighborhood Hits	288
SwissProt Accessions	P09067, P09069	Gene names	HOXB5, HOX2A
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2A) (HHO.C10) (HU-1).

HXA7_MOUSE
NC score	0.370035 (rank : 260)	θ value	0.0961366 (rank : 211)
Query Neighborhood Hits	426	Target Neighborhood Hits	318	Shared Neighborhood Hits	289
SwissProt Accessions	P02830, Q544P0	Gene names	Hoxa7, Hox-1.1, Hoxa-7
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1.1) (M6-12) (M6).

HXB5_MOUSE
NC score	0.369925 (rank : 261)	θ value	0.279714 (rank : 244)
Query Neighborhood Hits	426	Target Neighborhood Hits	337	Shared Neighborhood Hits	287
SwissProt Accessions	P09079, Q3ZAY8	Gene names	Hoxb5, Hox-2.1, Hoxb-5
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2.1) (MU-1) (H24.1).

HXA7_HUMAN
NC score	0.366447 (rank : 262)	θ value	1.38821 (rank : 309)
Query Neighborhood Hits	426	Target Neighborhood Hits	309	Shared Neighborhood Hits	286
SwissProt Accessions	P31268, O43368, O43486, O95655, Q9NSC8, Q9UDM1	Gene names	HOXA7, HOX1A
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1).

PAX3_MOUSE
NC score	0.361954 (rank : 263)	θ value	0.0330416 (rank : 160)
Query Neighborhood Hits	426	Target Neighborhood Hits	478	Shared Neighborhood Hits	321
SwissProt Accessions	P24610, Q3UFQ9, Q8BRE7, Q9CXI6	Gene names	Pax3, Pax-3
Domain Architecture
Description	Paired box protein Pax-3.

PAX3_HUMAN
NC score	0.361796 (rank : 264)	θ value	0.00390308 (rank : 88)
Query Neighborhood Hits	426	Target Neighborhood Hits	513	Shared Neighborhood Hits	322
SwissProt Accessions	P23760, Q16448	Gene names	PAX3, HUP2
Domain Architecture
Description	Paired box protein Pax-3 (HUP2).

PAX6_HUMAN
NC score	0.361527 (rank : 265)	θ value	0.00509761 (rank : 94)
Query Neighborhood Hits	426	Target Neighborhood Hits	383	Shared Neighborhood Hits	308
SwissProt Accessions	P26367, Q6N006, Q99413	Gene names	PAX6, AN2
Domain Architecture
Description	Paired box protein Pax-6 (Oculorhombin) (Aniridia type II protein).

PAX6_MOUSE
NC score	0.361527 (rank : 266)	θ value	0.00509761 (rank : 95)
Query Neighborhood Hits	426	Target Neighborhood Hits	383	Shared Neighborhood Hits	308
SwissProt Accessions	P63015, P32117, P70601, Q62222, Q64037, Q8CEI5, Q8VDB5, Q921Q8	Gene names	Pax6, Pax-6, Sey
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-6 (Oculorhombin).

PEPP2_HUMAN
NC score	0.360134 (rank : 267)	θ value	6.88961 (rank : 405)
Query Neighborhood Hits	426	Target Neighborhood Hits	316	Shared Neighborhood Hits	281
SwissProt Accessions	Q9BQY4, Q9BR00	Gene names	PEPP2, THG1
Domain Architecture
Description	Paired-like homeobox protein PEPP-2 (Testis homeobox gene 1).

PAX7_HUMAN
NC score	0.359031 (rank : 268)	θ value	0.0736092 (rank : 197)
Query Neighborhood Hits	426	Target Neighborhood Hits	456	Shared Neighborhood Hits	321
SwissProt Accessions	P23759	Gene names	PAX7, HUP1
Domain Architecture
Description	Paired box protein Pax-7 (HUP1).

DUX1_HUMAN
NC score	0.358933 (rank : 269)	θ value	1.06291 (rank : 298)
Query Neighborhood Hits	426	Target Neighborhood Hits	330	Shared Neighborhood Hits	301
SwissProt Accessions	O43812	Gene names	DUX1
Domain Architecture	No domain graphic available
Description	Double homeobox protein 1.

PAX7_MOUSE
NC score	0.358796 (rank : 270)	θ value	0.0736092 (rank : 198)
Query Neighborhood Hits	426	Target Neighborhood Hits	422	Shared Neighborhood Hits	319
SwissProt Accessions	P47239, Q9ES16	Gene names	Pax7, Pax-7
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-7.

HXC6_HUMAN
NC score	0.357085 (rank : 271)	θ value	0.62314 (rank : 282)
Query Neighborhood Hits	426	Target Neighborhood Hits	306	Shared Neighborhood Hits	283
SwissProt Accessions	P09630	Gene names	HOXC6, HOX3C
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3C) (HHO.C8) (CP25).

HXC6_MOUSE
NC score	0.357085 (rank : 272)	θ value	0.62314 (rank : 283)
Query Neighborhood Hits	426	Target Neighborhood Hits	306	Shared Neighborhood Hits	283
SwissProt Accessions	P10629, Q61683	Gene names	Hoxc6, Hox-3.3, Hoxc-6
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3.3) (Hox-6.1).

DUX5_HUMAN
NC score	0.356611 (rank : 273)	θ value	1.06291 (rank : 299)
Query Neighborhood Hits	426	Target Neighborhood Hits	330	Shared Neighborhood Hits	301
SwissProt Accessions	Q96PT3	Gene names	DUX5
Domain Architecture	No domain graphic available
Description	Double homeobox protein 5.

HXB6_HUMAN
NC score	0.356410 (rank : 274)	θ value	1.06291 (rank : 300)
Query Neighborhood Hits	426	Target Neighborhood Hits	307	Shared Neighborhood Hits	281
SwissProt Accessions	P17509, P09068, Q9HB11, Q9UGH2	Gene names	HOXB6, HOX2B
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2).

HXB6_MOUSE
NC score	0.356334 (rank : 275)	θ value	1.06291 (rank : 301)
Query Neighborhood Hits	426	Target Neighborhood Hits	309	Shared Neighborhood Hits	281
SwissProt Accessions	P09023	Gene names	Hoxb6, Hox-2.2, Hoxb-6
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2.2) (Homeobox protein MH-22A).

HXA6_HUMAN
NC score	0.354916 (rank : 276)	θ value	0.365318 (rank : 258)
Query Neighborhood Hits	426	Target Neighborhood Hits	309	Shared Neighborhood Hits	282
SwissProt Accessions	P31267, Q9UPM0	Gene names	HOXA6, HOX1B
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A6 (Hox-1B).

HXA6_MOUSE
NC score	0.352064 (rank : 277)	θ value	0.365318 (rank : 259)
Query Neighborhood Hits	426	Target Neighborhood Hits	304	Shared Neighborhood Hits	280
SwissProt Accessions	P09092, Q9JI98	Gene names	Hoxa6, Hox-1.2, Hoxa-6
Domain Architecture
Description	Homeobox protein Hox-A6 (Hox-1.2) (M5-4).

LMX1B_HUMAN
NC score	0.337980 (rank : 278)	θ value	0.0148317 (rank : 133)
Query Neighborhood Hits	426	Target Neighborhood Hits	404	Shared Neighborhood Hits	295
SwissProt Accessions	O60663, O75463	Gene names	LMX1B
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

LMX1B_MOUSE
NC score	0.337539 (rank : 279)	θ value	0.0148317 (rank : 134)
Query Neighborhood Hits	426	Target Neighborhood Hits	394	Shared Neighborhood Hits	294
SwissProt Accessions	O88609	Gene names	Lmx1b
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

LMX1A_HUMAN
NC score	0.335218 (rank : 280)	θ value	0.00665767 (rank : 106)
Query Neighborhood Hits	426	Target Neighborhood Hits	406	Shared Neighborhood Hits	300
SwissProt Accessions	Q8TE12, Q8TE11	Gene names	LMX1A
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

LMX1A_MOUSE
NC score	0.333376 (rank : 281)	θ value	0.0252991 (rank : 151)
Query Neighborhood Hits	426	Target Neighborhood Hits	405	Shared Neighborhood Hits	298
SwissProt Accessions	Q9JKU8	Gene names	Lmx1a
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

DUX3_HUMAN
NC score	0.326650 (rank : 282)	θ value	3.0926 (rank : 344)
Query Neighborhood Hits	426	Target Neighborhood Hits	312	Shared Neighborhood Hits	284
SwissProt Accessions	Q96PT4, Q9UND2	Gene names	DUX3
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 3.

LHX8_MOUSE
NC score	0.323200 (rank : 283)	θ value	θ > 10 (rank : 441)
Query Neighborhood Hits	426	Target Neighborhood Hits	406	Shared Neighborhood Hits	285
SwissProt Accessions	O35652, O70163, O88707	Gene names	Lhx8, Lhx7
Domain Architecture
Description	LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3).

LHX6_MOUSE
NC score	0.304378 (rank : 284)	θ value	0.00869519 (rank : 116)
Query Neighborhood Hits	426	Target Neighborhood Hits	399	Shared Neighborhood Hits	284
SwissProt Accessions	O88706	Gene names	Lhx6
Domain Architecture
Description	LIM/homeobox protein Lhx6.

LHX61_HUMAN
NC score	0.303215 (rank : 285)	θ value	0.00390308 (rank : 87)
Query Neighborhood Hits	426	Target Neighborhood Hits	412	Shared Neighborhood Hits	284
SwissProt Accessions	Q9UPM6, Q5T7S8, Q9NTK3, Q9UPM5	Gene names	LHX6, LHX6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1 (Lhx6).

ATBF1_HUMAN
NC score	0.302157 (rank : 286)	θ value	0.000270298 (rank : 43)
Query Neighborhood Hits	426	Target Neighborhood Hits	1547	Shared Neighborhood Hits	355
SwissProt Accessions	Q15911, O15101, Q13719	Gene names	ATBF1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

LHX2_HUMAN
NC score	0.300507 (rank : 287)	θ value	θ > 10 (rank : 439)
Query Neighborhood Hits	426	Target Neighborhood Hits	432	Shared Neighborhood Hits	298
SwissProt Accessions	P50458, O95860, Q8N1Z3	Gene names	LHX2, LH2
Domain Architecture
Description	LIM/homeobox protein Lhx2 (Homeobox protein LH-2).

LHX2_MOUSE
NC score	0.300419 (rank : 288)	θ value	θ > 10 (rank : 440)
Query Neighborhood Hits	426	Target Neighborhood Hits	431	Shared Neighborhood Hits	298
SwissProt Accessions	Q9Z0S2	Gene names	Lhx2
Domain Architecture
Description	LIM/homeobox protein Lhx2.

ATBF1_MOUSE
NC score	0.297403 (rank : 289)	θ value	0.000602161 (rank : 51)
Query Neighborhood Hits	426	Target Neighborhood Hits	1841	Shared Neighborhood Hits	362
SwissProt Accessions	Q61329	Gene names	Atbf1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

LHX9_MOUSE
NC score	0.297174 (rank : 290)	θ value	θ > 10 (rank : 443)
Query Neighborhood Hits	426	Target Neighborhood Hits	445	Shared Neighborhood Hits	297
SwissProt Accessions	Q9WUH2, Q9QYQ5, Q9QYQ6, Q9QZ00, Q9WU44	Gene names	Lhx9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

LHX9_HUMAN
NC score	0.297033 (rank : 291)	θ value	θ > 10 (rank : 442)
Query Neighborhood Hits	426	Target Neighborhood Hits	444	Shared Neighborhood Hits	297
SwissProt Accessions	Q9NQ69, Q5VUE3, Q9BYU6, Q9NQ70	Gene names	LHX9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

LHX61_MOUSE
NC score	0.286797 (rank : 292)	θ value	0.00665767 (rank : 105)
Query Neighborhood Hits	426	Target Neighborhood Hits	396	Shared Neighborhood Hits	272
SwissProt Accessions	Q9R1R0, Q9R1R1	Gene names	Lhx6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1.

ISL1_HUMAN
NC score	0.280718 (rank : 293)	θ value	3.0926 (rank : 350)
Query Neighborhood Hits	426	Target Neighborhood Hits	421	Shared Neighborhood Hits	293
SwissProt Accessions	P61371, P20663, P47894	Gene names	ISL1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

ISL1_MOUSE
NC score	0.280718 (rank : 294)	θ value	3.0926 (rank : 351)
Query Neighborhood Hits	426	Target Neighborhood Hits	421	Shared Neighborhood Hits	293
SwissProt Accessions	P61372, P20663, P47894, Q812D8	Gene names	Isl1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

ISL2_HUMAN
NC score	0.275914 (rank : 295)	θ value	1.81305 (rank : 320)
Query Neighborhood Hits	426	Target Neighborhood Hits	435	Shared Neighborhood Hits	296
SwissProt Accessions	Q96A47	Gene names	ISL2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

ISL2_MOUSE
NC score	0.275785 (rank : 296)	θ value	3.0926 (rank : 352)
Query Neighborhood Hits	426	Target Neighborhood Hits	426	Shared Neighborhood Hits	292
SwissProt Accessions	Q9CXV0	Gene names	Isl2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

DUX2_HUMAN
NC score	0.211793 (rank : 297)	θ value	θ > 10 (rank : 429)
Query Neighborhood Hits	426	Target Neighborhood Hits	173	Shared Neighborhood Hits	169
SwissProt Accessions	O75505	Gene names	DUX2
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 2.

ZHX3_HUMAN
NC score	0.199427 (rank : 298)	θ value	0.125558 (rank : 222)
Query Neighborhood Hits	426	Target Neighborhood Hits	331	Shared Neighborhood Hits	202
SwissProt Accessions	Q9H4I2, O43145	Gene names	ZHX3, KIAA0395, TIX1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

CUTL2_HUMAN
NC score	0.182386 (rank : 299)	θ value	0.0961366 (rank : 207)
Query Neighborhood Hits	426	Target Neighborhood Hits	906	Shared Neighborhood Hits	172
SwissProt Accessions	O14529	Gene names	CUTL2, KIAA0293
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

CUTL2_MOUSE
NC score	0.180322 (rank : 300)	θ value	0.0736092 (rank : 192)
Query Neighborhood Hits	426	Target Neighborhood Hits	771	Shared Neighborhood Hits	170
SwissProt Accessions	P70298	Gene names	Cutl2
Domain Architecture
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

ZHX3_MOUSE
NC score	0.179214 (rank : 301)	θ value	0.365318 (rank : 265)
Query Neighborhood Hits	426	Target Neighborhood Hits	321	Shared Neighborhood Hits	196
SwissProt Accessions	Q8C0Q2, Q80U14	Gene names	Zhx3, Kiaa0395, Tix1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

PBX2_MOUSE
NC score	0.175294 (rank : 302)	θ value	θ > 10 (rank : 456)
Query Neighborhood Hits	426	Target Neighborhood Hits	341	Shared Neighborhood Hits	271
SwissProt Accessions	O35984	Gene names	Pbx2
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2).

SIX2_MOUSE
NC score	0.172650 (rank : 303)	θ value	θ > 10 (rank : 468)
Query Neighborhood Hits	426	Target Neighborhood Hits	376	Shared Neighborhood Hits	295
SwissProt Accessions	Q62232, P70179	Gene names	Six2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

PBX2_HUMAN
NC score	0.172299 (rank : 304)	θ value	θ > 10 (rank : 455)
Query Neighborhood Hits	426	Target Neighborhood Hits	350	Shared Neighborhood Hits	271
SwissProt Accessions	P40425	Gene names	PBX2, G17
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2) (Protein G17).

ZHX1_MOUSE
NC score	0.171438 (rank : 305)	θ value	0.00390308 (rank : 89)
Query Neighborhood Hits	426	Target Neighborhood Hits	334	Shared Neighborhood Hits	203
SwissProt Accessions	P70121, Q8BQ68, Q8C6T4, Q8CJG3	Gene names	Zhx1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

SIX2_HUMAN
NC score	0.167063 (rank : 306)	θ value	θ > 10 (rank : 467)
Query Neighborhood Hits	426	Target Neighborhood Hits	345	Shared Neighborhood Hits	277
SwissProt Accessions	Q9NPC8, Q9BXH7	Gene names	SIX2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

ZHX1_HUMAN
NC score	0.163623 (rank : 307)	θ value	0.00509761 (rank : 96)
Query Neighborhood Hits	426	Target Neighborhood Hits	307	Shared Neighborhood Hits	188
SwissProt Accessions	Q9UKY1, Q8IWD8	Gene names	ZHX1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

SIX1_MOUSE
NC score	0.163569 (rank : 308)	θ value	θ > 10 (rank : 466)
Query Neighborhood Hits	426	Target Neighborhood Hits	341	Shared Neighborhood Hits	285
SwissProt Accessions	Q62231, Q8CIL7	Gene names	Six1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

SIX1_HUMAN
NC score	0.163275 (rank : 309)	θ value	θ > 10 (rank : 465)
Query Neighborhood Hits	426	Target Neighborhood Hits	343	Shared Neighborhood Hits	285
SwissProt Accessions	Q15475, Q96H64	Gene names	SIX1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

PBX3_MOUSE
NC score	0.161031 (rank : 310)	θ value	θ > 10 (rank : 458)
Query Neighborhood Hits	426	Target Neighborhood Hits	306	Shared Neighborhood Hits	262
SwissProt Accessions	O35317, Q925W2	Gene names	Pbx3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX3_HUMAN
NC score	0.161009 (rank : 311)	θ value	θ > 10 (rank : 457)
Query Neighborhood Hits	426	Target Neighborhood Hits	306	Shared Neighborhood Hits	262
SwissProt Accessions	P40426, Q96PF9, Q96PG0	Gene names	PBX3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX1_HUMAN
NC score	0.157715 (rank : 312)	θ value	θ > 10 (rank : 453)
Query Neighborhood Hits	426	Target Neighborhood Hits	317	Shared Neighborhood Hits	263
SwissProt Accessions	P40424	Gene names	PBX1, PRL
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1) (Homeobox protein PRL).

PBX1_MOUSE
NC score	0.157715 (rank : 313)	θ value	θ > 10 (rank : 454)
Query Neighborhood Hits	426	Target Neighborhood Hits	317	Shared Neighborhood Hits	263
SwissProt Accessions	P41778	Gene names	Pbx1, Pbx-1
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1).

PBX4_MOUSE
NC score	0.156043 (rank : 314)	θ value	θ > 10 (rank : 459)
Query Neighborhood Hits	426	Target Neighborhood Hits	324	Shared Neighborhood Hits	263
SwissProt Accessions	Q99NE9, Q8CFL2, Q99NE8	Gene names	Pbx4
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 4 (Homeobox protein PBX4).

SIX4_MOUSE
NC score	0.152127 (rank : 315)	θ value	4.03905 (rank : 370)
Query Neighborhood Hits	426	Target Neighborhood Hits	341	Shared Neighborhood Hits	268
SwissProt Accessions	Q61321, Q61322, Q61323	Gene names	Six4, Arec3
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4) (Skeletal muscle-specific ARE-binding protein AREC3).

ZHX2_HUMAN
NC score	0.150325 (rank : 316)	θ value	0.0961366 (rank : 215)
Query Neighborhood Hits	426	Target Neighborhood Hits	347	Shared Neighborhood Hits	170
SwissProt Accessions	Q9Y6X8	Gene names	ZHX2, AFR1, KIAA0854, RAF
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

SIX4_HUMAN
NC score	0.149336 (rank : 317)	θ value	6.88961 (rank : 409)
Query Neighborhood Hits	426	Target Neighborhood Hits	342	Shared Neighborhood Hits	268
SwissProt Accessions	Q9UIU6	Gene names	SIX4
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4).

HNF6_MOUSE
NC score	0.143982 (rank : 318)	θ value	5.27518 (rank : 382)
Query Neighborhood Hits	426	Target Neighborhood Hits	124	Shared Neighborhood Hits	83
SwissProt Accessions	O08755	Gene names	Onecut1, Hnf6, Hnf6a
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

HNF6_HUMAN
NC score	0.143178 (rank : 319)	θ value	5.27518 (rank : 381)
Query Neighborhood Hits	426	Target Neighborhood Hits	127	Shared Neighborhood Hits	81
SwissProt Accessions	Q9UBC0, Q99744, Q9UMR6	Gene names	ONECUT1, HNF6, HNF6A
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

IRX6_MOUSE
NC score	0.140737 (rank : 320)	θ value	1.81305 (rank : 319)
Query Neighborhood Hits	426	Target Neighborhood Hits	256	Shared Neighborhood Hits	211
SwissProt Accessions	Q9ER75	Gene names	Irx6, Irxb3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

ZHX2_MOUSE
NC score	0.140598 (rank : 321)	θ value	0.125558 (rank : 221)
Query Neighborhood Hits	426	Target Neighborhood Hits	435	Shared Neighborhood Hits	170
SwissProt Accessions	Q8C0C0	Gene names	Zhx2, Afr1, Raf
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

CUTL1_MOUSE
NC score	0.139270 (rank : 322)	θ value	0.125558 (rank : 216)
Query Neighborhood Hits	426	Target Neighborhood Hits	1620	Shared Neighborhood Hits	232
SwissProt Accessions	P53564, O08994, P70301, Q571L6, Q91ZD2	Gene names	Cutl1, Cux, Cux1, Kiaa4047
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP) (Homeobox protein Cux).

IRX6_HUMAN
NC score	0.137380 (rank : 323)	θ value	4.03905 (rank : 369)
Query Neighborhood Hits	426	Target Neighborhood Hits	262	Shared Neighborhood Hits	213
SwissProt Accessions	P78412, Q7Z2K0	Gene names	IRX6, IRX7, IRXB3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

IRX4_MOUSE
NC score	0.135954 (rank : 324)	θ value	3.0926 (rank : 349)
Query Neighborhood Hits	426	Target Neighborhood Hits	286	Shared Neighborhood Hits	230
SwissProt Accessions	Q9QY61	Gene names	Irx4, Irxa3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

IRX4_HUMAN
NC score	0.134807 (rank : 325)	θ value	3.0926 (rank : 348)
Query Neighborhood Hits	426	Target Neighborhood Hits	276	Shared Neighborhood Hits	230
SwissProt Accessions	P78413, Q9UHR2	Gene names	IRX4, IRXA3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

CUTL1_HUMAN
NC score	0.133931 (rank : 326)	θ value	0.0736092 (rank : 191)
Query Neighborhood Hits	426	Target Neighborhood Hits	1574	Shared Neighborhood Hits	219
SwissProt Accessions	P39880, Q6NYH4, Q9UEV5	Gene names	CUTL1
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP).

ONEC2_HUMAN
NC score	0.132017 (rank : 327)	θ value	3.0926 (rank : 356)
Query Neighborhood Hits	426	Target Neighborhood Hits	115	Shared Neighborhood Hits	82
SwissProt Accessions	O95948	Gene names	ONECUT2
Domain Architecture
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

SIX5_HUMAN
NC score	0.128588 (rank : 328)	θ value	1.06291 (rank : 304)
Query Neighborhood Hits	426	Target Neighborhood Hits	386	Shared Neighborhood Hits	235
SwissProt Accessions	Q8N196	Gene names	SIX5, DMAHP
Domain Architecture	No domain graphic available
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein).

ONEC2_MOUSE
NC score	0.128033 (rank : 329)	θ value	3.0926 (rank : 357)
Query Neighborhood Hits	426	Target Neighborhood Hits	123	Shared Neighborhood Hits	80
SwissProt Accessions	Q6XBJ3	Gene names	Onecut2, Oc2
Domain Architecture	No domain graphic available
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

HOP_HUMAN
NC score	0.125700 (rank : 330)	θ value	θ > 10 (rank : 433)
Query Neighborhood Hits	426	Target Neighborhood Hits	107	Shared Neighborhood Hits	94
SwissProt Accessions	Q9BPY8, Q8N0V6, Q96CI1	Gene names	HOP, HOD, LAGY, NECC1, OB1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Lung cancer-associated Y protein) (Odd homeobox protein 1) (Not expressed in choriocarcinoma protein 1).

SIX3_HUMAN
NC score	0.124449 (rank : 331)	θ value	θ > 10 (rank : 469)
Query Neighborhood Hits	426	Target Neighborhood Hits	285	Shared Neighborhood Hits	236
SwissProt Accessions	O95343	Gene names	SIX3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX3_MOUSE
NC score	0.124420 (rank : 332)	θ value	θ > 10 (rank : 470)
Query Neighborhood Hits	426	Target Neighborhood Hits	289	Shared Neighborhood Hits	236
SwissProt Accessions	Q62233, P70176, P70177	Gene names	Six3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX6_HUMAN
NC score	0.120839 (rank : 333)	θ value	θ > 10 (rank : 471)
Query Neighborhood Hits	426	Target Neighborhood Hits	269	Shared Neighborhood Hits	224
SwissProt Accessions	O95475, Q9P1X8	Gene names	SIX6, OPTX2, SIX9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Homeodomain protein OPTX2).

SIX6_MOUSE
NC score	0.116224 (rank : 334)	θ value	θ > 10 (rank : 472)
Query Neighborhood Hits	426	Target Neighborhood Hits	267	Shared Neighborhood Hits	224
SwissProt Accessions	Q9QZ28, O88423	Gene names	Six6, Optx2, Six9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Six9 protein).

HOP_MOUSE
NC score	0.114628 (rank : 335)	θ value	θ > 10 (rank : 434)
Query Neighborhood Hits	426	Target Neighborhood Hits	102	Shared Neighborhood Hits	88
SwissProt Accessions	Q8R1H0, Q8C1N5, Q8CJ22	Gene names	Hop, Hod, Ob1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Homeobox-only protein) (Odd homeobox protein 1) (mOB1).

IRX3_MOUSE
NC score	0.110642 (rank : 336)	θ value	θ > 10 (rank : 436)
Query Neighborhood Hits	426	Target Neighborhood Hits	303	Shared Neighborhood Hits	198
SwissProt Accessions	P81067	Gene names	Irx3, Irxb1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

IRX3_HUMAN
NC score	0.109797 (rank : 337)	θ value	θ > 10 (rank : 435)
Query Neighborhood Hits	426	Target Neighborhood Hits	342	Shared Neighborhood Hits	198
SwissProt Accessions	P78415, Q7Z4A4, Q7Z4A5, Q8IVC6	Gene names	IRX3, IRXB1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

SIX5_MOUSE
NC score	0.108291 (rank : 338)	θ value	4.03905 (rank : 371)
Query Neighborhood Hits	426	Target Neighborhood Hits	354	Shared Neighborhood Hits	211
SwissProt Accessions	P70178	Gene names	Six5, Dmahp
Domain Architecture
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein homolog).

IRX2_HUMAN
NC score	0.106973 (rank : 339)	θ value	8.99809 (rank : 418)
Query Neighborhood Hits	426	Target Neighborhood Hits	358	Shared Neighborhood Hits	205
SwissProt Accessions	Q9BZI1, Q7Z2I7	Gene names	IRX2, IRXA2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

IRX5_HUMAN
NC score	0.101833 (rank : 340)	θ value	θ > 10 (rank : 437)
Query Neighborhood Hits	426	Target Neighborhood Hits	362	Shared Neighborhood Hits	196
SwissProt Accessions	P78411, P78416, Q7Z2E1	Gene names	IRX5, IRX2A, IRXB2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2) (IRX-2A).

IRX1_HUMAN
NC score	0.101224 (rank : 341)	θ value	5.27518 (rank : 383)
Query Neighborhood Hits	426	Target Neighborhood Hits	285	Shared Neighborhood Hits	199
SwissProt Accessions	P78414, Q7Z2F8, Q8N312	Gene names	IRX1, IRXA1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

IRX1_MOUSE
NC score	0.101164 (rank : 342)	θ value	4.03905 (rank : 368)
Query Neighborhood Hits	426	Target Neighborhood Hits	269	Shared Neighborhood Hits	199
SwissProt Accessions	P81068, O55120, Q9JLL6	Gene names	Irx1, Irxa1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-1 (Iroquois homeobox protein 1) (Homeodomain protein IRXA1).

IRX2_MOUSE
NC score	0.098199 (rank : 343)	θ value	8.99809 (rank : 419)
Query Neighborhood Hits	426	Target Neighborhood Hits	264	Shared Neighborhood Hits	192
SwissProt Accessions	P81066, O55121, Q9ERN1	Gene names	Irx2, Irxa2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

IRX5_MOUSE
NC score	0.097058 (rank : 344)	θ value	θ > 10 (rank : 438)
Query Neighborhood Hits	426	Target Neighborhood Hits	324	Shared Neighborhood Hits	194
SwissProt Accessions	Q9JKQ4, Q80WV4, Q9JLL5	Gene names	Irx5, Irxb2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-5 (Iroquois homeobox protein 5) (Homeodomain protein IRXB2).

RHOX5_MOUSE
NC score	0.078852 (rank : 345)	θ value	θ > 10 (rank : 464)
Query Neighborhood Hits	426	Target Neighborhood Hits	69	Shared Neighborhood Hits	54
SwissProt Accessions	P52651	Gene names	Rhox5, Pem
Domain Architecture	No domain graphic available
Description	Homeobox protein Rhox5 (Reproductive homeobox on chromosome X 5) (Homeobox protein Pem) (Placenta and embryonic expression protein).

CK024_MOUSE
NC score	0.073830 (rank : 346)	θ value	0.279714 (rank : 238)
Query Neighborhood Hits	426	Target Neighborhood Hits	307	Shared Neighborhood Hits	51
SwissProt Accessions	Q9D8N1, Q8VCP2	Gene names
Domain Architecture	No domain graphic available
Description	Uncharacterized protein C11orf24 homolog precursor.

HMBX1_HUMAN
NC score	0.070229 (rank : 347)	θ value	θ > 10 (rank : 430)
Query Neighborhood Hits	426	Target Neighborhood Hits	118	Shared Neighborhood Hits	88
SwissProt Accessions	Q6NT76, Q3Y6P1, Q96GS5, Q9H701	Gene names	HMBOX1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

HMBX1_MOUSE
NC score	0.069763 (rank : 348)	θ value	θ > 10 (rank : 431)
Query Neighborhood Hits	426	Target Neighborhood Hits	117	Shared Neighborhood Hits	88
SwissProt Accessions	Q8BJA3, Q80WC2, Q8BWE7, Q99LV1	Gene names	Hmbox1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

LMO4_HUMAN
NC score	0.068781 (rank : 349)	θ value	θ > 10 (rank : 446)
Query Neighborhood Hits	426	Target Neighborhood Hits	111	Shared Neighborhood Hits	19
SwissProt Accessions	P61968, O00158, O88894	Gene names	LMO4
Domain Architecture
Description	LIM domain transcription factor LMO4 (LIM domain only protein 4) (LMO- 4) (Breast tumor autoantigen).

LMO4_MOUSE
NC score	0.068781 (rank : 350)	θ value	θ > 10 (rank : 447)
Query Neighborhood Hits	426	Target Neighborhood Hits	111	Shared Neighborhood Hits	19
SwissProt Accessions	P61969, O00158, O88894	Gene names	Lmo4
Domain Architecture
Description	LIM domain transcription factor LMO4 (LIM domain only protein 4) (LMO- 4) (Breast tumor autoantigen).

SATB1_MOUSE
NC score	0.068593 (rank : 351)	θ value	0.00869519 (rank : 119)
Query Neighborhood Hits	426	Target Neighborhood Hits	130	Shared Neighborhood Hits	56
SwissProt Accessions	Q60611	Gene names	Satb1
Domain Architecture
Description	DNA-binding protein SATB1 (Special AT-rich sequence-binding protein 1).

SATB1_HUMAN
NC score	0.067322 (rank : 352)	θ value	0.00869519 (rank : 118)
Query Neighborhood Hits	426	Target Neighborhood Hits	130	Shared Neighborhood Hits	51
SwissProt Accessions	Q01826	Gene names	SATB1
Domain Architecture
Description	DNA-binding protein SATB1 (Special AT-rich sequence-binding protein 1).

RBTN1_HUMAN
NC score	0.067139 (rank : 353)	θ value	θ > 10 (rank : 460)
Query Neighborhood Hits	426	Target Neighborhood Hits	110	Shared Neighborhood Hits	19
SwissProt Accessions	P25800, Q4VBC5	Gene names	LMO1, RBTN1, RHOM1, TTG1
Domain Architecture
Description	Rhombotin-1 (Cysteine-rich protein TTG-1) (T-cell translocation protein 1) (LIM-only protein 1).

RBTN1_MOUSE
NC score	0.067117 (rank : 354)	θ value	θ > 10 (rank : 461)
Query Neighborhood Hits	426	Target Neighborhood Hits	109	Shared Neighborhood Hits	19
SwissProt Accessions	Q924W9	Gene names	Lmo1, Rbtn1, Rhom1, Ttg1
Domain Architecture	No domain graphic available
Description	Rhombotin-1 (Cysteine-rich protein TTG-1) (LIM-only protein 1).

LMO3_HUMAN
NC score	0.066778 (rank : 355)	θ value	θ > 10 (rank : 444)
Query Neighborhood Hits	426	Target Neighborhood Hits	111	Shared Neighborhood Hits	19
SwissProt Accessions	Q8TAP4, Q8N974, Q9UDD5	Gene names	LMO3, RBTN3, RHOM3
Domain Architecture
Description	LIM-only protein 3 (Neuronal-specific transcription factor DAT1) (Rhombotin-3).

LMO3_MOUSE
NC score	0.066778 (rank : 356)	θ value	θ > 10 (rank : 445)
Query Neighborhood Hits	426	Target Neighborhood Hits	111	Shared Neighborhood Hits	19
SwissProt Accessions	Q8BZL8	Gene names	Lmo3
Domain Architecture
Description	LIM-only protein 3 (Neuronal-specific transcription factor DAT1).

NCOA6_MOUSE
NC score	0.065391 (rank : 357)	θ value	0.279714 (rank : 246)
Query Neighborhood Hits	426	Target Neighborhood Hits	1076	Shared Neighborhood Hits	84
SwissProt Accessions	Q9JL19, Q9JLT9	Gene names	Ncoa6, Aib3, Prip, Rap250, Trbp
Domain Architecture	No domain graphic available
Description	Nuclear receptor coactivator 6 (Amplified in breast cancer protein 3) (Cancer-amplified transcriptional coactivator ASC-2) (Activating signal cointegrator 2) (ASC-2) (Peroxisome proliferator-activated receptor-interacting protein) (PPAR-interacting protein) (Nuclear receptor-activating protein, 250 kDa) (Nuclear receptor coactivator RAP250) (NRC) (Thyroid hormone receptor-binding protein).

RBTN2_MOUSE
NC score	0.064244 (rank : 358)	θ value	θ > 10 (rank : 463)
Query Neighborhood Hits	426	Target Neighborhood Hits	114	Shared Neighborhood Hits	19
SwissProt Accessions	P25801	Gene names	Lmo2, Rbtn-2, Rbtn2, Rhom-2
Domain Architecture
Description	Rhombotin-2 (Cysteine-rich protein TTG-2) (T-cell translocation protein 2) (LIM-only protein 2).

RBTN2_HUMAN
NC score	0.064242 (rank : 359)	θ value	θ > 10 (rank : 462)
Query Neighborhood Hits	426	Target Neighborhood Hits	114	Shared Neighborhood Hits	19
SwissProt Accessions	P25791, Q9HD58	Gene names	LMO2, RBTN2, RHOM2, TTG2
Domain Architecture
Description	Rhombotin-2 (Cysteine-rich protein TTG-2) (T-cell translocation protein 2) (LIM-only protein 2).

NCOA6_HUMAN
NC score	0.063163 (rank : 360)	θ value	2.36792 (rank : 330)
Query Neighborhood Hits	426	Target Neighborhood Hits	1202	Shared Neighborhood Hits	89
SwissProt Accessions	Q14686, Q9NTZ9, Q9UH74, Q9UK86	Gene names	NCOA6, AIB3, KIAA0181, RAP250, TRBP
Domain Architecture	No domain graphic available
Description	Nuclear receptor coactivator 6 (Amplified in breast cancer protein 3) (Cancer-amplified transcriptional coactivator ASC-2) (Activating signal cointegrator 2) (ASC-2) (Peroxisome proliferator-activated receptor-interacting protein) (PPAR-interacting protein) (PRIP) (Nuclear receptor-activating protein, 250 kDa) (Nuclear receptor coactivator RAP250) (NRC RAP250) (Thyroid hormone receptor-binding protein).

PARM1_MOUSE
NC score	0.059600 (rank : 361)	θ value	0.00665767 (rank : 108)
Query Neighborhood Hits	426	Target Neighborhood Hits	140	Shared Neighborhood Hits	25
SwissProt Accessions	Q923D3, Q3TTV0, Q3UFU4	Gene names
Domain Architecture	No domain graphic available
Description	Protein PARM-1 precursor.

LEUK_HUMAN
NC score	0.059380 (rank : 362)	θ value	0.279714 (rank : 245)
Query Neighborhood Hits	426	Target Neighborhood Hits	213	Shared Neighborhood Hits	39
SwissProt Accessions	P16150	Gene names	SPN, CD43
Domain Architecture	No domain graphic available
Description	Leukosialin precursor (Leukocyte sialoglycoprotein) (Sialophorin) (Galactoglycoprotein) (GALGP) (CD43 antigen).

HOMEZ_HUMAN
NC score	0.057422 (rank : 363)	θ value	θ > 10 (rank : 432)
Query Neighborhood Hits	426	Target Neighborhood Hits	110	Shared Neighborhood Hits	49
SwissProt Accessions	Q8IX15, Q6P049, Q86XB6, Q9P2A5	Gene names	HOMEZ, KIAA1443
Domain Architecture
Description	Homeobox and leucine zipper protein Homez (Homeodomain leucine zipper- containing factor).

HNF1A_MOUSE
NC score	0.055887 (rank : 364)	θ value	0.62314 (rank : 281)
Query Neighborhood Hits	426	Target Neighborhood Hits	212	Shared Neighborhood Hits	54
SwissProt Accessions	P22361	Gene names	Tcf1, Hnf-1, Hnf-1a, Hnf1a
Domain Architecture
Description	Hepatocyte nuclear factor 1-alpha (HNF-1A) (Liver-specific transcription factor LF-B1) (LFB1).

MDC1_HUMAN
NC score	0.055873 (rank : 365)	θ value	0.00298849 (rank : 78)
Query Neighborhood Hits	426	Target Neighborhood Hits	1446	Shared Neighborhood Hits	81
SwissProt Accessions	Q14676, Q5JP55, Q5JP56, Q5ST83, Q68CQ3, Q86Z06, Q96QC2	Gene names	MDC1, KIAA0170, NFBD1
Domain Architecture	No domain graphic available
Description	Mediator of DNA damage checkpoint protein 1 (Nuclear factor with BRCT domains 1).

ADNP_HUMAN
NC score	0.055700 (rank : 366)	θ value	θ > 10 (rank : 427)
Query Neighborhood Hits	426	Target Neighborhood Hits	265	Shared Neighborhood Hits	40
SwissProt Accessions	Q9H2P0, O94881, Q9UG34	Gene names	ADNP, KIAA0784
Domain Architecture
Description	Activity-dependent neuroprotector (Activity-dependent neuroprotective protein).

PAX2_MOUSE
NC score	0.055644 (rank : 367)	θ value	θ > 10 (rank : 450)
Query Neighborhood Hits	426	Target Neighborhood Hits	86	Shared Neighborhood Hits	53
SwissProt Accessions	P32114	Gene names	Pax2, Pax-2
Domain Architecture
Description	Paired box protein Pax-2.

NACAM_MOUSE
NC score	0.055610 (rank : 368)	θ value	0.000786445 (rank : 57)
Query Neighborhood Hits	426	Target Neighborhood Hits	1866	Shared Neighborhood Hits	113
SwissProt Accessions	P70670	Gene names	Naca
Domain Architecture	No domain graphic available
Description	Nascent polypeptide-associated complex subunit alpha, muscle-specific form (Alpha-NAC, muscle-specific form).

PAX2_HUMAN
NC score	0.055365 (rank : 369)	θ value	θ > 10 (rank : 449)
Query Neighborhood Hits	426	Target Neighborhood Hits	84	Shared Neighborhood Hits	53
SwissProt Accessions	Q02962, Q15105, Q15110, Q15837	Gene names	PAX2
Domain Architecture
Description	Paired box protein Pax-2.

MUC1_MOUSE
NC score	0.054527 (rank : 370)	θ value	2.36792 (rank : 328)
Query Neighborhood Hits	426	Target Neighborhood Hits	388	Shared Neighborhood Hits	49
SwissProt Accessions	Q02496	Gene names	Muc1, Muc-1
Domain Architecture
Description	Mucin-1 precursor (Polymorphic epithelial mucin) (PEMT) (Episialin).

ADNP_MOUSE
NC score	0.051932 (rank : 371)	θ value	θ > 10 (rank : 428)
Query Neighborhood Hits	426	Target Neighborhood Hits	232	Shared Neighborhood Hits	43
SwissProt Accessions	Q9Z103	Gene names	Adnp
Domain Architecture
Description	Activity-dependent neuroprotector (Activity-dependent neuroprotective protein).

MEIS3_HUMAN
NC score	0.051776 (rank : 372)	θ value	θ > 10 (rank : 448)
Query Neighborhood Hits	426	Target Neighborhood Hits	118	Shared Neighborhood Hits	79
SwissProt Accessions	Q99687, Q6NT73, Q8TC66, Q9NPW2	Gene names	MEIS3, MRG2
Domain Architecture	No domain graphic available
Description	Homeobox protein Meis3 (Meis1-related protein 2).

PAX5_MOUSE
NC score	0.051474 (rank : 373)	θ value	θ > 10 (rank : 452)
Query Neighborhood Hits	426	Target Neighborhood Hits	106	Shared Neighborhood Hits	51
SwissProt Accessions	Q02650	Gene names	Pax5, Pax-5
Domain Architecture
Description	Paired box protein Pax-5 (B-cell-specific transcription factor) (BSAP).

PAX5_HUMAN
NC score	0.051399 (rank : 374)	θ value	θ > 10 (rank : 451)
Query Neighborhood Hits	426	Target Neighborhood Hits	106	Shared Neighborhood Hits	49
SwissProt Accessions	Q02548, O75933	Gene names	PAX5
Domain Architecture
Description	Paired box protein Pax-5 (B-cell-specific transcription factor) (BSAP).

HNF1A_HUMAN
NC score	0.050544 (rank : 375)	θ value	0.813845 (rank : 290)
Query Neighborhood Hits	426	Target Neighborhood Hits	193	Shared Neighborhood Hits	43
SwissProt Accessions	P20823, Q99861	Gene names	TCF1, HNF1A
Domain Architecture
Description	Hepatocyte nuclear factor 1-alpha (HNF-1A) (Liver-specific transcription factor LF-B1) (LFB1) (Transcription factor 1) (TCF-1).

GTSE1_MOUSE
NC score	0.049954 (rank : 376)	θ value	0.00665767 (rank : 98)
Query Neighborhood Hits	426	Target Neighborhood Hits	245	Shared Neighborhood Hits	24
SwissProt Accessions	Q8R080, O89015, Q9CSG9	Gene names	Gtse1, B99
Domain Architecture	No domain graphic available
Description	G2 and S phase expressed protein 1 (Gtse-1) (B99 protein).

HCFC1_MOUSE
NC score	0.049489 (rank : 377)	θ value	0.0431538 (rank : 162)
Query Neighborhood Hits	426	Target Neighborhood Hits	348	Shared Neighborhood Hits	39
SwissProt Accessions	Q61191, Q684R1, Q7TSB0, Q8C2D0, Q9QWH2	Gene names	Hcfc1
Domain Architecture	No domain graphic available
Description	Host cell factor (HCF) (HCF-1) (C1 factor) [Contains: HCF N-terminal chain 1; HCF N-terminal chain 2; HCF N-terminal chain 3; HCF N- terminal chain 4; HCF N-terminal chain 5; HCF N-terminal chain 6; HCF C-terminal chain 1; HCF C-terminal chain 2; HCF C-terminal chain 3; HCF C-terminal chain 4; HCF C-terminal chain 5; HCF C-terminal chain 6].

HCFC1_HUMAN
NC score	0.047300 (rank : 378)	θ value	0.0563607 (rank : 175)
Query Neighborhood Hits	426	Target Neighborhood Hits	331	Shared Neighborhood Hits	31
SwissProt Accessions	P51610, Q6P4G5	Gene names	HCFC1, HCF1
Domain Architecture	No domain graphic available
Description	Host cell factor (HCF) (HCF-1) (C1 factor) (VP16 accessory protein) (VCAF) (CFF) [Contains: HCF N-terminal chain 1; HCF N-terminal chain 2; HCF N-terminal chain 3; HCF N-terminal chain 4; HCF N-terminal chain 5; HCF N-terminal chain 6; HCF C-terminal chain 1; HCF C- terminal chain 2; HCF C-terminal chain 3; HCF C-terminal chain 4; HCF C-terminal chain 5; HCF C-terminal chain 6].

MEIS3_MOUSE
NC score	0.047033 (rank : 379)	θ value	1.81305 (rank : 321)
Query Neighborhood Hits	426	Target Neighborhood Hits	118	Shared Neighborhood Hits	76
SwissProt Accessions	P97368, Q99L81	Gene names	Meis3, Mrg2
Domain Architecture
Description	Homeobox protein Meis3 (Meis1-related protein 2).

MDC1_MOUSE
NC score	0.046697 (rank : 380)	θ value	0.62314 (rank : 284)
Query Neighborhood Hits	426	Target Neighborhood Hits	998	Shared Neighborhood Hits	65
SwissProt Accessions	Q5PSV9, Q5U4D3, Q6ZQH7	Gene names	Mdc1, Kiaa0170
Domain Architecture	No domain graphic available
Description	Mediator of DNA damage checkpoint protein 1.

YETS2_MOUSE
NC score	0.044095 (rank : 381)	θ value	1.06291 (rank : 305)
Query Neighborhood Hits	426	Target Neighborhood Hits	278	Shared Neighborhood Hits	39
SwissProt Accessions	Q3TUF7, Q6PGF8, Q80TI2, Q8CG86	Gene names	Yeats2, Kiaa1197
Domain Architecture	No domain graphic available
Description	YEATS domain-containing protein 2.

ARID2_HUMAN
NC score	0.041290 (rank : 382)	θ value	0.47712 (rank : 268)
Query Neighborhood Hits	426	Target Neighborhood Hits	302	Shared Neighborhood Hits	33
SwissProt Accessions	Q68CP9, Q5EB51, Q645I3, Q6ZRY5, Q7Z3I5, Q86T28, Q96SJ6, Q9HCL5	Gene names	ARID2, KIAA1557
Domain Architecture	No domain graphic available
Description	AT-rich interactive domain-containing protein 2 (ARID domain- containing protein 2) (BRG1-associated factor 200) (BAF200).

TP53B_MOUSE
NC score	0.039531 (rank : 383)	θ value	0.00665767 (rank : 111)
Query Neighborhood Hits	426	Target Neighborhood Hits	644	Shared Neighborhood Hits	36
SwissProt Accessions	P70399, Q68FD0, Q8CI97, Q91YC9	Gene names	Tp53bp1, Trp53bp1
Domain Architecture	No domain graphic available
Description	Tumor suppressor p53-binding protein 1 (p53-binding protein 1) (p53BP1) (53BP1).

DCP1A_MOUSE
NC score	0.039424 (rank : 384)	θ value	1.38821 (rank : 308)
Query Neighborhood Hits	426	Target Neighborhood Hits	103	Shared Neighborhood Hits	16
SwissProt Accessions	Q91YD3, Q6NZE3	Gene names	Dcp1a, Mitc1, Smif
Domain Architecture	No domain graphic available
Description	mRNA decapping enzyme 1A (EC 3.-.-.-) (Transcription factor SMIF) (MAD homolog 4-interacting transcription coactivator 1) (Smad4-interacting transcriptional co-activator).

R3HD2_MOUSE
NC score	0.037024 (rank : 385)	θ value	5.27518 (rank : 393)
Query Neighborhood Hits	426	Target Neighborhood Hits	397	Shared Neighborhood Hits	34
SwissProt Accessions	Q80TM6, Q80YB1, Q8BLS5, Q9CW50	Gene names	R3hdm2, Kiaa1002
Domain Architecture
Description	R3H domain-containing protein 2.

TCF8_HUMAN
NC score	0.036439 (rank : 386)	θ value	0.0431538 (rank : 171)
Query Neighborhood Hits	426	Target Neighborhood Hits	1057	Shared Neighborhood Hits	56
SwissProt Accessions	P37275, Q12924, Q13800	Gene names	TCF8, AREB6
Domain Architecture
Description	Transcription factor 8 (NIL-2-A zinc finger protein) (Negative regulator of IL2).

MAGE1_HUMAN
NC score	0.034876 (rank : 387)	θ value	0.0193708 (rank : 143)
Query Neighborhood Hits	426	Target Neighborhood Hits	1389	Shared Neighborhood Hits	102
SwissProt Accessions	Q9HCI5, Q86TG0, Q8TD92, Q9H216	Gene names	MAGEE1, HCA1, KIAA1587
Domain Architecture	No domain graphic available
Description	Melanoma-associated antigen E1 (MAGE-E1 antigen) (Hepatocellular carcinoma-associated protein 1).

DOT1L_HUMAN
NC score	0.032691 (rank : 388)	θ value	2.36792 (rank : 327)
Query Neighborhood Hits	426	Target Neighborhood Hits	660	Shared Neighborhood Hits	49
SwissProt Accessions	Q8TEK3, O60379, Q96JL1	Gene names	DOT1L, KIAA1814
Domain Architecture	No domain graphic available
Description	Histone-lysine N-methyltransferase, H3 lysine-79 specific (EC 2.1.1.43) (Histone H3-K79 methyltransferase) (H3-K79-HMTase) (DOT1-like protein).

K0460_MOUSE
NC score	0.032390 (rank : 389)	θ value	3.0926 (rank : 353)
Query Neighborhood Hits	426	Target Neighborhood Hits	374	Shared Neighborhood Hits	39
SwissProt Accessions	Q6NXI6, Q3U3L8, Q6ZQA7	Gene names	Kiaa0460
Domain Architecture	No domain graphic available
Description	Protein KIAA0460.

CO002_HUMAN
NC score	0.031423 (rank : 390)	θ value	6.88961 (rank : 398)
Query Neighborhood Hits	426	Target Neighborhood Hits	387	Shared Neighborhood Hits	42
SwissProt Accessions	Q9NZP6	Gene names	C15orf2
Domain Architecture	No domain graphic available
Description	Protein C15orf2.

MUC1_HUMAN
NC score	0.030157 (rank : 391)	θ value	0.0736092 (rank : 196)
Query Neighborhood Hits	426	Target Neighborhood Hits	975	Shared Neighborhood Hits	72
SwissProt Accessions	P15941, P13931, P15942, P17626, Q14128, Q14876, Q16437, Q16442, Q16615, Q9BXA4, Q9UE75, Q9UE76, Q9UQL1, Q9Y4J2	Gene names	MUC1
Domain Architecture
Description	Mucin-1 precursor (MUC-1) (Polymorphic epithelial mucin) (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) (H23AG) (Peanut- reactive urinary mucin) (PUM) (Breast carcinoma-associated antigen DF3) (CD227 antigen).

YETS2_HUMAN
NC score	0.029424 (rank : 392)	θ value	3.0926 (rank : 365)
Query Neighborhood Hits	426	Target Neighborhood Hits	212	Shared Neighborhood Hits	29
SwissProt Accessions	Q9ULM3, Q641P6, Q9NW96	Gene names	YEATS2, KIAA1197
Domain Architecture	No domain graphic available
Description	YEATS domain-containing protein 2.

GRIN1_MOUSE
NC score	0.029068 (rank : 393)	θ value	4.03905 (rank : 367)
Query Neighborhood Hits	426	Target Neighborhood Hits	337	Shared Neighborhood Hits	31
SwissProt Accessions	Q3UNH4, Q6PGF9, Q9QZY2	Gene names	Gprin1
Domain Architecture	No domain graphic available
Description	G protein-regulated inducer of neurite outgrowth 1 (GRIN1).

EP300_HUMAN
NC score	0.028891 (rank : 394)	θ value	5.27518 (rank : 380)
Query Neighborhood Hits	426	Target Neighborhood Hits	821	Shared Neighborhood Hits	64
SwissProt Accessions	Q09472	Gene names	EP300, P300
Domain Architecture
Description	E1A-associated protein p300 (EC 2.3.1.48).

MAP4_MOUSE
NC score	0.028314 (rank : 395)	θ value	3.0926 (rank : 354)
Query Neighborhood Hits	426	Target Neighborhood Hits	409	Shared Neighborhood Hits	32
SwissProt Accessions	P27546	Gene names	Map4, Mtap4
Domain Architecture
Description	Microtubule-associated protein 4 (MAP 4).

MUCDL_MOUSE
NC score	0.028223 (rank : 396)	θ value	2.36792 (rank : 329)
Query Neighborhood Hits	426	Target Neighborhood Hits	461	Shared Neighborhood Hits	44
SwissProt Accessions	Q8VHF2, Q8CEJ3, Q9D8I9	Gene names	Mucdhl
Domain Architecture
Description	Mucin and cadherin-like protein precursor (Mu-protocadherin).

PKNX1_MOUSE
NC score	0.028153 (rank : 397)	θ value	5.27518 (rank : 391)
Query Neighborhood Hits	426	Target Neighborhood Hits	103	Shared Neighborhood Hits	61
SwissProt Accessions	O70477	Gene names	Pknox1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1).

ATX1_MOUSE
NC score	0.027600 (rank : 398)	θ value	8.99809 (rank : 413)
Query Neighborhood Hits	426	Target Neighborhood Hits	264	Shared Neighborhood Hits	26
SwissProt Accessions	P54254	Gene names	Atxn1, Sca1
Domain Architecture
Description	Ataxin-1 (Spinocerebellar ataxia type 1 protein homolog).

GP112_HUMAN
NC score	0.026412 (rank : 399)	θ value	0.0193708 (rank : 140)
Query Neighborhood Hits	426	Target Neighborhood Hits	441	Shared Neighborhood Hits	41
SwissProt Accessions	Q8IZF6, Q86SM6	Gene names	GPR112
Domain Architecture	No domain graphic available
Description	Probable G-protein coupled receptor 112.

PF21B_MOUSE
NC score	0.026175 (rank : 400)	θ value	0.21417 (rank : 236)
Query Neighborhood Hits	426	Target Neighborhood Hits	278	Shared Neighborhood Hits	29
SwissProt Accessions	Q8C966	Gene names	Phf21b
Domain Architecture	No domain graphic available
Description	PHD finger protein 21B.

PKNX1_HUMAN
NC score	0.025731 (rank : 401)	θ value	8.99809 (rank : 423)
Query Neighborhood Hits	426	Target Neighborhood Hits	101	Shared Neighborhood Hits	60
SwissProt Accessions	P55347, O00528, Q8IWT7	Gene names	PKNOX1, PREP1
Domain Architecture
Description	Homeobox protein PKNOX1 (PBX/knotted homeobox 1) (Homeobox protein PREP-1).

ZCPW1_MOUSE
NC score	0.024829 (rank : 402)	θ value	0.813845 (rank : 296)
Query Neighborhood Hits	426	Target Neighborhood Hits	307	Shared Neighborhood Hits	14
SwissProt Accessions	Q6IR42	Gene names	Zcwpw1
Domain Architecture	No domain graphic available
Description	Zinc finger CW-type PWWP domain protein 1 homolog.

GRIN1_HUMAN
NC score	0.024631 (rank : 403)	θ value	4.03905 (rank : 366)
Query Neighborhood Hits	426	Target Neighborhood Hits	681	Shared Neighborhood Hits	44
SwissProt Accessions	Q7Z2K8, Q8ND74, Q96PZ4	Gene names	GPRIN1, KIAA1893
Domain Architecture	No domain graphic available
Description	G protein-regulated inducer of neurite outgrowth 1 (GRIN1).

NFAT5_HUMAN
NC score	0.024408 (rank : 404)	θ value	0.813845 (rank : 291)
Query Neighborhood Hits	426	Target Neighborhood Hits	217	Shared Neighborhood Hits	22
SwissProt Accessions	O94916, O95693, Q9UN18	Gene names	NFAT5, KIAA0827, TONEBP
Domain Architecture
Description	Nuclear factor of activated T-cells 5 (T-cell transcription factor NFAT5) (NF-AT5) (Tonicity-responsive enhancer-binding protein) (TonE- binding protein) (TonEBP).

DCP1A_HUMAN
NC score	0.023601 (rank : 405)	θ value	3.0926 (rank : 343)
Query Neighborhood Hits	426	Target Neighborhood Hits	228	Shared Neighborhood Hits	25
SwissProt Accessions	Q9NPI6	Gene names	DCP1A, SMIF
Domain Architecture	No domain graphic available
Description	mRNA decapping enzyme 1A (EC 3.-.-.-) (Transcription factor SMIF) (Smad4-interacting transcriptional co-activator).

NCOA2_HUMAN
NC score	0.023413 (rank : 406)	θ value	1.06291 (rank : 302)
Query Neighborhood Hits	426	Target Neighborhood Hits	281	Shared Neighborhood Hits	24
SwissProt Accessions	Q15596	Gene names	NCOA2, TIF2
Domain Architecture
Description	Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional intermediary factor 2).

PAPOB_HUMAN
NC score	0.023137 (rank : 407)	θ value	0.0252991 (rank : 152)
Query Neighborhood Hits	426	Target Neighborhood Hits	25	Shared Neighborhood Hits	6
SwissProt Accessions	Q9NRJ5, Q8NE14	Gene names	PAPOLB, PAPT
Domain Architecture
Description	Poly(A) polymerase beta (EC 2.7.7.19) (PAP beta) (Polynucleotide adenylyltransferase beta) (Testis-specific poly(A) polymerase).

NCOA2_MOUSE
NC score	0.022126 (rank : 408)	θ value	1.06291 (rank : 303)
Query Neighborhood Hits	426	Target Neighborhood Hits	281	Shared Neighborhood Hits	27
SwissProt Accessions	Q61026, O09001, P97759	Gene names	Ncoa2, Grip1, Tif2
Domain Architecture
Description	Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional intermediary factor 2) (Glucocorticoid receptor-interacting protein 1) (GRIP-1).

TCF8_MOUSE
NC score	0.021814 (rank : 409)	θ value	0.0113563 (rank : 129)
Query Neighborhood Hits	426	Target Neighborhood Hits	1067	Shared Neighborhood Hits	68
SwissProt Accessions	Q64318, Q62519	Gene names	Tcf8, Zfhx1a, Zfx1a, Zfx1ha
Domain Architecture
Description	Transcription factor 8 (Zinc finger homeobox protein 1a) (MEB1) (Delta EF1).

PAPOA_HUMAN
NC score	0.021300 (rank : 410)	θ value	2.36792 (rank : 334)
Query Neighborhood Hits	426	Target Neighborhood Hits	75	Shared Neighborhood Hits	14
SwissProt Accessions	P51003, Q86SX4, Q86TV0, Q8IYF5, Q9BVU2	Gene names	PAPOLA, PAP
Domain Architecture	No domain graphic available
Description	Poly(A) polymerase alpha (EC 2.7.7.19) (PAP) (Polynucleotide adenylyltransferase alpha).

ZN750_MOUSE
NC score	0.020499 (rank : 411)	θ value	1.06291 (rank : 306)
Query Neighborhood Hits	426	Target Neighborhood Hits	346	Shared Neighborhood Hits	24
SwissProt Accessions	Q8BH05, Q66JP3, Q8C0L1	Gene names	Znf750
Domain Architecture	No domain graphic available
Description	Protein ZNF750.

CRTC1_MOUSE
NC score	0.019353 (rank : 412)	θ value	6.88961 (rank : 399)
Query Neighborhood Hits	426	Target Neighborhood Hits	230	Shared Neighborhood Hits	28
SwissProt Accessions	Q68ED7, Q6ZQ85	Gene names	Crtc1, Kiaa0616, Mect1
Domain Architecture	No domain graphic available
Description	CREB-regulated transcription coactivator 1 (Mucoepidermoid carcinoma translocated protein 1 homolog).

ATX7_MOUSE
NC score	0.018821 (rank : 413)	θ value	1.06291 (rank : 297)
Query Neighborhood Hits	426	Target Neighborhood Hits	328	Shared Neighborhood Hits	19
SwissProt Accessions	Q8R4I1, Q8BL17	Gene names	Atxn7, Sca7
Domain Architecture	No domain graphic available
Description	Ataxin-7 (Spinocerebellar ataxia type 7 protein homolog).

CNOT3_HUMAN
NC score	0.018606 (rank : 414)	θ value	8.99809 (rank : 416)
Query Neighborhood Hits	426	Target Neighborhood Hits	425	Shared Neighborhood Hits	35
SwissProt Accessions	O75175, Q9NZN7, Q9UF76	Gene names	CNOT3, KIAA0691, NOT3
Domain Architecture
Description	CCR4-NOT transcription complex subunit 3 (CCR4-associated factor 3).

SYNJ1_HUMAN
NC score	0.018492 (rank : 415)	θ value	8.99809 (rank : 425)
Query Neighborhood Hits	426	Target Neighborhood Hits	498	Shared Neighborhood Hits	40
SwissProt Accessions	O43426, O43425, O94984	Gene names	SYNJ1, KIAA0910
Domain Architecture
Description	Synaptojanin-1 (EC 3.1.3.36) (Synaptic inositol-1,4,5-trisphosphate 5- phosphatase 1).

PLAK_HUMAN
NC score	0.017777 (rank : 416)	θ value	0.813845 (rank : 294)
Query Neighborhood Hits	426	Target Neighborhood Hits	53	Shared Neighborhood Hits	3
SwissProt Accessions	P14923, Q9HCX9	Gene names	JUP, DP3
Domain Architecture
Description	Junction plakoglobin (Desmoplakin-3) (Desmoplakin III).

PLAK_MOUSE
NC score	0.017404 (rank : 417)	θ value	0.813845 (rank : 295)
Query Neighborhood Hits	426	Target Neighborhood Hits	55	Shared Neighborhood Hits	3
SwissProt Accessions	Q02257, Q8CGD3	Gene names	Jup
Domain Architecture	No domain graphic available
Description	Junction plakoglobin (Desmoplakin-3) (Desmoplakin III).

CIC_MOUSE
NC score	0.017090 (rank : 418)	θ value	8.99809 (rank : 415)
Query Neighborhood Hits	426	Target Neighborhood Hits	742	Shared Neighborhood Hits	57
SwissProt Accessions	Q924A2, Q6PDJ8, Q8CGE4, Q8CHH0, Q9CW61	Gene names	Cic, Kiaa0306
Domain Architecture	No domain graphic available
Description	Protein capicua homolog.

PDZD2_HUMAN
NC score	0.015011 (rank : 419)	θ value	5.27518 (rank : 390)
Query Neighborhood Hits	426	Target Neighborhood Hits	772	Shared Neighborhood Hits	41
SwissProt Accessions	O15018, Q9BXD4	Gene names	PDZD2, AIPC, KIAA0300, PDZK3
Domain Architecture	No domain graphic available
Description	PDZ domain-containing protein 2 (PDZ domain-containing protein 3) (Activated in prostate cancer protein).

PRAX_HUMAN
NC score	0.014803 (rank : 420)	θ value	6.88961 (rank : 408)
Query Neighborhood Hits	426	Target Neighborhood Hits	215	Shared Neighborhood Hits	20
SwissProt Accessions	Q9BXM0, Q9BXL9, Q9HCF2	Gene names	PRX, KIAA1620
Domain Architecture
Description	Periaxin.

MLL3_HUMAN
NC score	0.013760 (rank : 421)	θ value	5.27518 (rank : 384)
Query Neighborhood Hits	426	Target Neighborhood Hits	1644	Shared Neighborhood Hits	69
SwissProt Accessions	Q8NEZ4, Q8NC02, Q8NDF6, Q9H9P4, Q9NR13, Q9P222, Q9UDR7	Gene names	MLL3, HALR, KIAA1506
Domain Architecture
Description	Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog (EC 2.1.1.43) (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (Homologous to ALR protein).

EPN2_HUMAN
NC score	0.013622 (rank : 422)	θ value	0.813845 (rank : 287)
Query Neighborhood Hits	426	Target Neighborhood Hits	156	Shared Neighborhood Hits	15
SwissProt Accessions	O95208, O95207, Q9H7Z2, Q9UPT7	Gene names	EPN2, KIAA1065
Domain Architecture
Description	Epsin-2 (EPS-15-interacting protein 2).

BAZ2A_HUMAN
NC score	0.011777 (rank : 423)	θ value	8.99809 (rank : 414)
Query Neighborhood Hits	426	Target Neighborhood Hits	780	Shared Neighborhood Hits	53
SwissProt Accessions	Q9UIF9, O00536, O15030, Q96H26	Gene names	BAZ2A, KIAA0314, TIP5
Domain Architecture
Description	Bromodomain adjacent to zinc finger domain 2A (Transcription termination factor I-interacting protein 5) (TTF-I-interacting protein 5) (Tip5) (hWALp3).

T240L_HUMAN
NC score	0.011762 (rank : 424)	θ value	2.36792 (rank : 341)
Query Neighborhood Hits	426	Target Neighborhood Hits	132	Shared Neighborhood Hits	15
SwissProt Accessions	Q71F56, Q68DN4, Q9H8C0, Q9NSY9, Q9UFD8, Q9UPX5	Gene names	THRAP2, KIAA1025, PROSIT240, TRAP240L
Domain Architecture	No domain graphic available
Description	Thyroid hormone receptor-associated protein 2 (Thyroid hormone receptor-associated protein complex 240 kDa component-like).

PORIM_MOUSE
NC score	0.011485 (rank : 425)	θ value	8.99809 (rank : 424)
Query Neighborhood Hits	426	Target Neighborhood Hits	43	Shared Neighborhood Hits	7
SwissProt Accessions	Q91Z22, Q3T9F6, Q3TLL2, Q3U1R6, Q8CEX4	Gene names	Tmem123
Domain Architecture	No domain graphic available
Description	Porimin precursor (Transmembrane protein 123).

SYNPO_HUMAN
NC score	0.010826 (rank : 426)	θ value	6.88961 (rank : 410)
Query Neighborhood Hits	426	Target Neighborhood Hits	281	Shared Neighborhood Hits	25
SwissProt Accessions	Q8N3V7, O15271, Q9UPX1	Gene names	SYNPO, KIAA1029
Domain Architecture	No domain graphic available
Description	Synaptopodin.

EXOSX_MOUSE
NC score	0.010772 (rank : 427)	θ value	6.88961 (rank : 401)
Query Neighborhood Hits	426	Target Neighborhood Hits	36	Shared Neighborhood Hits	4
SwissProt Accessions	P56960, Q9QYS8, Q9R0B1	Gene names	Exosc10, Pmscl2
Domain Architecture
Description	Exosome component 10 (Polymyositis/scleroderma autoantigen 2 homolog) (Autoantigen PM/Scl 2 homolog).

HEMGN_MOUSE
NC score	0.010612 (rank : 428)	θ value	6.88961 (rank : 402)
Query Neighborhood Hits	426	Target Neighborhood Hits	81	Shared Neighborhood Hits	7
SwissProt Accessions	Q9ERZ0, Q3TAE6, Q80YT2, Q8CF29	Gene names	Hemgn, Ndr
Domain Architecture	No domain graphic available
Description	Hemogen (Hemopoietic gene protein) (Negative differentiation regulator protein) (mNDR).

CDC5L_MOUSE
NC score	0.010540 (rank : 429)	θ value	5.27518 (rank : 377)
Query Neighborhood Hits	426	Target Neighborhood Hits	205	Shared Neighborhood Hits	11
SwissProt Accessions	Q6A068, Q8K1J9	Gene names	Cdc5l, Kiaa0432
Domain Architecture	No domain graphic available
Description	Cell division cycle 5-related protein (Cdc5-like protein).

PER3_HUMAN
NC score	0.010533 (rank : 430)	θ value	8.99809 (rank : 422)
Query Neighborhood Hits	426	Target Neighborhood Hits	479	Shared Neighborhood Hits	38
SwissProt Accessions	P56645, Q5H8X4, Q969K6, Q96S77, Q96S78, Q9C0J3, Q9NSP9, Q9UGU8	Gene names	PER3
Domain Architecture
Description	Period circadian protein 3 (hPER3).

PGCA_MOUSE
NC score	0.010410 (rank : 431)	θ value	6.88961 (rank : 407)
Query Neighborhood Hits	426	Target Neighborhood Hits	643	Shared Neighborhood Hits	40
SwissProt Accessions	Q61282, Q64021	Gene names	Agc1, Agc
Domain Architecture
Description	Aggrecan core protein precursor (Cartilage-specific proteoglycan core protein) (CSPCP).

DAB2_HUMAN
NC score	0.009480 (rank : 432)	θ value	8.99809 (rank : 417)
Query Neighborhood Hits	426	Target Neighborhood Hits	197	Shared Neighborhood Hits	17
SwissProt Accessions	P98082, Q13598, Q9BTY0, Q9UK04	Gene names	DAB2, DOC2
Domain Architecture
Description	Disabled homolog 2 (Differentially expressed protein 2) (DOC-2).

SIP1_MOUSE
NC score	0.009395 (rank : 433)	θ value	0.21417 (rank : 237)
Query Neighborhood Hits	426	Target Neighborhood Hits	870	Shared Neighborhood Hits	42
SwissProt Accessions	Q9R0G7	Gene names	Zfhx1b, Sip1, Zfx1b
Domain Architecture
Description	Zinc finger homeobox protein 1b (Smad-interacting protein 1).

NUPL_MOUSE
NC score	0.009297 (rank : 434)	θ value	5.27518 (rank : 387)
Query Neighborhood Hits	426	Target Neighborhood Hits	113	Shared Neighborhood Hits	12
SwissProt Accessions	Q8K2K6, O70448, Q8BQL5, Q8CDK9	Gene names	Hrb, Rip
Domain Architecture
Description	Nucleoporin-like protein RIP (HIV-1 Rev-binding protein homolog).

NRBF2_HUMAN
NC score	0.009219 (rank : 435)	θ value	6.88961 (rank : 404)
Query Neighborhood Hits	426	Target Neighborhood Hits	122	Shared Neighborhood Hits	4
SwissProt Accessions	Q96F24, Q86UR2, Q96NP6, Q9H0S9, Q9H2I2	Gene names	NRBF2, COPR
Domain Architecture	No domain graphic available
Description	Nuclear receptor-binding factor 2 (NRBF-2) (Comodulator of PPAR and RXR).

PF21A_HUMAN
NC score	0.008975 (rank : 436)	θ value	6.88961 (rank : 406)
Query Neighborhood Hits	426	Target Neighborhood Hits	303	Shared Neighborhood Hits	16
SwissProt Accessions	Q96BD5, Q6AWA2, Q9C0G7, Q9H8V9, Q9HAK6, Q9NZE9	Gene names	PHF21A, BHC80, KIAA1696
Domain Architecture	No domain graphic available
Description	PHD finger protein 21A (BRAF35-HDAC complex protein BHC80) (BHC80a).

NFH_MOUSE
NC score	0.008809 (rank : 437)	θ value	5.27518 (rank : 386)
Query Neighborhood Hits	426	Target Neighborhood Hits	2247	Shared Neighborhood Hits	93
SwissProt Accessions	P19246, Q5SVF6, Q61959	Gene names	Nefh, Nfh
Domain Architecture
Description	Neurofilament triplet H protein (200 kDa neurofilament protein) (Neurofilament heavy polypeptide) (NF-H).

POLS_MOUSE
NC score	0.008480 (rank : 438)	θ value	5.27518 (rank : 392)
Query Neighborhood Hits	426	Target Neighborhood Hits	91	Shared Neighborhood Hits	9
SwissProt Accessions	Q6PB75	Gene names	Pols
Domain Architecture	No domain graphic available
Description	DNA polymerase sigma (EC 2.7.7.7).

CDC5L_HUMAN
NC score	0.008403 (rank : 439)	θ value	6.88961 (rank : 397)
Query Neighborhood Hits	426	Target Neighborhood Hits	197	Shared Neighborhood Hits	7
SwissProt Accessions	Q99459, Q76N46, Q99974	Gene names	CDC5L, KIAA0432, PCDC5RP
Domain Architecture	No domain graphic available
Description	Cell division cycle 5-like protein (Cdc5-like protein) (Pombe cdc5- related protein).

ARRD1_MOUSE
NC score	0.008375 (rank : 440)	θ value	6.88961 (rank : 396)
Query Neighborhood Hits	426	Target Neighborhood Hits	90	Shared Neighborhood Hits	8
SwissProt Accessions	Q99KN1, Q3TDT6, Q8VEG7	Gene names	Arrdc1
Domain Architecture	No domain graphic available
Description	Arrestin domain-containing protein 1.

ZEP1_HUMAN
NC score	0.007601 (rank : 441)	θ value	1.38821 (rank : 314)
Query Neighborhood Hits	426	Target Neighborhood Hits	1036	Shared Neighborhood Hits	42
SwissProt Accessions	P15822, Q14122	Gene names	HIVEP1, ZNF40
Domain Architecture	No domain graphic available
Description	Zinc finger protein 40 (Human immunodeficiency virus type I enhancer- binding protein 1) (HIV-EP1) (Major histocompatibility complex-binding protein 1) (MBP-1) (Positive regulatory domain II-binding factor 1) (PRDII-BF1).

CD45_HUMAN
NC score	0.007362 (rank : 442)	θ value	0.0961366 (rank : 206)
Query Neighborhood Hits	426	Target Neighborhood Hits	243	Shared Neighborhood Hits	21
SwissProt Accessions	P08575, Q16614, Q9H0Y6	Gene names	PTPRC, CD45
Domain Architecture
Description	Leukocyte common antigen precursor (EC 3.1.3.48) (L-CA) (CD45 antigen) (T200).

NPAS4_HUMAN
NC score	0.007228 (rank : 443)	θ value	6.88961 (rank : 403)
Query Neighborhood Hits	426	Target Neighborhood Hits	214	Shared Neighborhood Hits	17
SwissProt Accessions	Q8IUM7, Q8N8S5, Q8N9Q9	Gene names	NPAS4, NXF
Domain Architecture	No domain graphic available
Description	Neuronal PAS domain-containing protein 4 (Neuronal PAS4) (HLH-PAS transcription factor NXF).

IC1_MOUSE
NC score	0.004771 (rank : 444)	θ value	1.81305 (rank : 318)
Query Neighborhood Hits	426	Target Neighborhood Hits	164	Shared Neighborhood Hits	15
SwissProt Accessions	P97290, O88330, Q99M43, Q9QX09	Gene names	Serping1, C1nh
Domain Architecture
Description	Plasma protease C1 inhibitor precursor (C1 Inh) (C1Inh) (C1 esterase inhibitor) (C1-inhibiting factor).

TPSNR_HUMAN
NC score	0.004656 (rank : 445)	θ value	4.03905 (rank : 373)
Query Neighborhood Hits	426	Target Neighborhood Hits	330	Shared Neighborhood Hits	5
SwissProt Accessions	Q9BX59, Q9NWB8	Gene names	TAPBPL
Domain Architecture	No domain graphic available
Description	Tapasin-related protein precursor (TAPASIN-R) (Tapasin-like) (TAP- binding protein-related protein) (TAPBP-R) (TAP-binding protein-like).

TSH3_HUMAN
NC score	0.004041 (rank : 446)	θ value	8.99809 (rank : 426)
Query Neighborhood Hits	426	Target Neighborhood Hits	564	Shared Neighborhood Hits	22
SwissProt Accessions	Q63HK5, Q9H0G6, Q9P254	Gene names	TSHZ3, KIAA1474, TSH3, ZNF537
Domain Architecture	No domain graphic available
Description	Teashirt homolog 3 (Zinc finger protein 537).

ELF1_HUMAN
NC score	0.003977 (rank : 447)	θ value	5.27518 (rank : 379)
Query Neighborhood Hits	426	Target Neighborhood Hits	104	Shared Neighborhood Hits	10
SwissProt Accessions	P32519, Q9UDE1	Gene names	ELF1
Domain Architecture	No domain graphic available
Description	ETS-related transcription factor Elf-1 (E74-like factor 1).

FOXGA_HUMAN
NC score	0.003877 (rank : 448)	θ value	0.279714 (rank : 240)
Query Neighborhood Hits	426	Target Neighborhood Hits	132	Shared Neighborhood Hits	5
SwissProt Accessions	P55316	Gene names	FOXG1A, FKHL2
Domain Architecture
Description	Forkhead box protein G1A (Forkhead-related protein FKHL2) (Transcription factor BF-2) (Brain factor 2) (BF2) (HFK2).

MY18B_HUMAN
NC score	0.003681 (rank : 449)	θ value	0.0563607 (rank : 183)
Query Neighborhood Hits	426	Target Neighborhood Hits	1299	Shared Neighborhood Hits	33
SwissProt Accessions	Q8IUG5, Q8NDI8, Q8TE65, Q8WWS0, Q96KH2, Q96KR8, Q96KR9	Gene names	MYO18B
Domain Architecture
Description	Myosin-18B (Myosin XVIIIb).

MEGF9_MOUSE
NC score	0.003139 (rank : 450)	θ value	8.99809 (rank : 421)
Query Neighborhood Hits	426	Target Neighborhood Hits	896	Shared Neighborhood Hits	44
SwissProt Accessions	Q8BH27, Q8BWI4	Gene names	Megf9, Egfl5, Kiaa0818
Domain Architecture
Description	Multiple epidermal growth factor-like domains 9 precursor (EGF-like domain-containing protein 5) (Multiple EGF-like domain protein 5).

ZFY16_HUMAN
NC score	0.001854 (rank : 451)	θ value	6.88961 (rank : 412)
Query Neighborhood Hits	426	Target Neighborhood Hits	125	Shared Neighborhood Hits	4
SwissProt Accessions	Q7Z3T8, O15023, Q7LAU7, Q86T69, Q8N5L3, Q8NEK3	Gene names	ZFYVE16, KIAA0305
Domain Architecture	No domain graphic available
Description	Zinc finger FYVE domain-containing protein 16 (Endofin) (Endosome- associated FYVE domain protein).

ARHGA_HUMAN
NC score	0.001242 (rank : 452)	θ value	6.88961 (rank : 395)
Query Neighborhood Hits	426	Target Neighborhood Hits	187	Shared Neighborhood Hits	6
SwissProt Accessions	O15013, O14665, Q68D55, Q8IWD9, Q8IY77	Gene names	ARHGEF10, KIAA0294
Domain Architecture
Description	Rho guanine nucleotide exchange factor 10.

MPDZ_MOUSE
NC score	0.000946 (rank : 453)	θ value	5.27518 (rank : 385)
Query Neighborhood Hits	426	Target Neighborhood Hits	298	Shared Neighborhood Hits	8
SwissProt Accessions	Q8VBX6, O08783, Q6P7U4, Q80ZY8, Q8BKJ1, Q8C0H8, Q8VBV5, Q8VBY0, Q9Z1K3	Gene names	Mpdz, Mupp1
Domain Architecture	No domain graphic available
Description	Multiple PDZ domain protein (Multi PDZ domain protein 1) (Multi-PDZ domain protein 1).

DSG2_MOUSE
NC score	0.000324 (rank : 454)	θ value	0.62314 (rank : 278)
Query Neighborhood Hits	426	Target Neighborhood Hits	174	Shared Neighborhood Hits	5
SwissProt Accessions	O55111, Q8K069, Q8R517	Gene names	Dsg2
Domain Architecture
Description	Desmoglein-2 precursor.

WNK1_MOUSE
NC score	-0.000661 (rank : 455)	θ value	4.03905 (rank : 374)
Query Neighborhood Hits	426	Target Neighborhood Hits	1179	Shared Neighborhood Hits	59
SwissProt Accessions	P83741	Gene names	Wnk1, Prkwnk1
Domain Architecture
Description	Serine/threonine-protein kinase WNK1 (EC 2.7.11.1) (Protein kinase with no lysine 1) (Protein kinase, lysine-deficient 1).

KIF12_MOUSE
NC score	-0.000937 (rank : 456)	θ value	8.99809 (rank : 420)
Query Neighborhood Hits	426	Target Neighborhood Hits	94	Shared Neighborhood Hits	6
SwissProt Accessions	Q9D2Z8, O35061	Gene names	Kif12
Domain Architecture
Description	Kinesin-like protein KIF12.

HIPK2_HUMAN
NC score	-0.001292 (rank : 457)	θ value	0.365318 (rank : 255)
Query Neighborhood Hits	426	Target Neighborhood Hits	845	Shared Neighborhood Hits	16
SwissProt Accessions	Q9H2X6, Q75MR7, Q8WWI4, Q9H2Y1	Gene names	HIPK2
Domain Architecture
Description	Homeodomain-interacting protein kinase 2 (EC 2.7.11.1) (hHIPk2).

SP3_MOUSE
NC score	-0.002310 (rank : 458)	θ value	4.03905 (rank : 372)
Query Neighborhood Hits	426	Target Neighborhood Hits	731	Shared Neighborhood Hits	16
SwissProt Accessions	O70494, Q68FF2, Q8CF64, Q8K378	Gene names	Sp3
Domain Architecture	No domain graphic available
Description	Transcription factor Sp3.

HIPK2_MOUSE
NC score	-0.002350 (rank : 459)	θ value	3.0926 (rank : 345)
Query Neighborhood Hits	426	Target Neighborhood Hits	871	Shared Neighborhood Hits	17
SwissProt Accessions	Q9QZR5, O88905, Q99P45, Q99P46, Q9D2E6, Q9D474, Q9EQL2, Q9QZR4	Gene names	Hipk2, Nbak1, Stank
Domain Architecture
Description	Homeodomain-interacting protein kinase 2 (EC 2.7.11.1) (Nuclear body- associated kinase 1) (Sialophorin tail-associated nuclear serine/threonine-protein kinase).

SP4_MOUSE
NC score	-0.002430 (rank : 460)	θ value	3.0926 (rank : 363)
Query Neighborhood Hits	426	Target Neighborhood Hits	759	Shared Neighborhood Hits	27
SwissProt Accessions	Q62445	Gene names	Sp4
Domain Architecture
Description	Transcription factor Sp4.

SP3_HUMAN
NC score	-0.002526 (rank : 461)	θ value	2.36792 (rank : 339)
Query Neighborhood Hits	426	Target Neighborhood Hits	737	Shared Neighborhood Hits	16
SwissProt Accessions	Q02447, Q8TD56, Q9BQR1	Gene names	SP3
Domain Architecture
Description	Transcription factor Sp3 (SPR-2).

SP4_HUMAN
NC score	-0.003114 (rank : 462)	θ value	3.0926 (rank : 362)
Query Neighborhood Hits	426	Target Neighborhood Hits	749	Shared Neighborhood Hits	20
SwissProt Accessions	Q02446, O60402	Gene names	SP4
Domain Architecture
Description	Transcription factor Sp4 (SPR-1).

TMPS9_HUMAN
NC score	-0.003234 (rank : 463)	θ value	3.0926 (rank : 364)
Query Neighborhood Hits	426	Target Neighborhood Hits	276	Shared Neighborhood Hits	9
SwissProt Accessions	Q7Z410, Q6ZND6, Q7Z411	Gene names	TMPRSS9
Domain Architecture	No domain graphic available
Description	Transmembrane protease, serine 9 (EC 3.4.21.-) (Polyserase-1) (Polyserase-I) (Polyserine protease 1) [Contains: Serase-1; Serase-2; Serase-3].

CE290_HUMAN
NC score	-0.003619 (rank : 464)	θ value	2.36792 (rank : 326)
Query Neighborhood Hits	426	Target Neighborhood Hits	1553	Shared Neighborhood Hits	21
SwissProt Accessions	O15078, Q1PSK5, Q66GS8, Q9H2G6, Q9H6Q7, Q9H8I0	Gene names	CEP290, KIAA0373, NPHP6
Domain Architecture	No domain graphic available
Description	Centrosomal protein Cep290 (Nephrocystin-6) (Tumor antigen se2-2).

ZBT20_HUMAN
NC score	-0.005131 (rank : 465)	θ value	2.36792 (rank : 342)
Query Neighborhood Hits	426	Target Neighborhood Hits	835	Shared Neighborhood Hits	23
SwissProt Accessions	Q9HC78	Gene names	ZBTB20, DPZF, ZNF288
Domain Architecture
Description	Zinc finger and BTB domain-containing protein 20 (Zinc finger protein 288) (Dendritic-derived BTB/POZ zinc finger protein).

ECM2_HUMAN
NC score	-0.005184 (rank : 466)	θ value	6.88961 (rank : 400)
Query Neighborhood Hits	426	Target Neighborhood Hits	402	Shared Neighborhood Hits	2
SwissProt Accessions	O94769	Gene names	ECM2
Domain Architecture
Description	Extracellular matrix protein 2 precursor (Matrix glycoprotein SC1/ECM2).

ZBT24_MOUSE
NC score	-0.006556 (rank : 467)	θ value	5.27518 (rank : 394)
Query Neighborhood Hits	426	Target Neighborhood Hits	894	Shared Neighborhood Hits	19
SwissProt Accessions	Q80X44, Q3UIB7, Q7TPC4, Q8CJC9	Gene names	Zbtb24, Bif1, Bsg1, Znf450
Domain Architecture	No domain graphic available
Description	Zinc finger and BTB domain-containing protein 24 (Zinc finger protein 450) (Bone morphogenetic protein-induced factor 1) (Brain-specific protein 1).

CAMKV_HUMAN
NC score	-0.006756 (rank : 468)	θ value	5.27518 (rank : 376)
Query Neighborhood Hits	426	Target Neighborhood Hits	1084	Shared Neighborhood Hits	37
SwissProt Accessions	Q8NCB2, Q6FIB8, Q8NBS8, Q8NC85, Q8NDU4, Q8WTT8, Q9BQC9, Q9H0Q5	Gene names	CAMKV
Domain Architecture	No domain graphic available
Description	CaM kinase-like vesicle-associated protein.

TITIN_HUMAN
NC score	-0.008506 (rank : 469)	θ value	6.88961 (rank : 411)
Query Neighborhood Hits	426	Target Neighborhood Hits	2923	Shared Neighborhood Hits	55
SwissProt Accessions	Q8WZ42, Q10465, Q10466, Q15598, Q2XUS3, Q32Q60, Q4U1Z6, Q6NSG0, Q6PDB1, Q6PJP0, Q7KYM2, Q7KYN4, Q7KYN5, Q7LDM3, Q7Z2X3, Q8TCG8, Q8WZ51, Q8WZ52, Q8WZ53, Q8WZB3, Q92761, Q92762, Q9UD97, Q9UP84, Q9Y6L9	Gene names	TTN
Domain Architecture	No domain graphic available
Description	Titin (EC 2.7.11.1) (Connectin) (Rhabdomyosarcoma antigen MU-RMS- 40.14).

STK10_HUMAN
NC score	-0.009112 (rank : 470)	θ value	2.36792 (rank : 340)
Query Neighborhood Hits	426	Target Neighborhood Hits	1921	Shared Neighborhood Hits	37
SwissProt Accessions	O94804, Q9UIW4	Gene names	STK10, LOK
Domain Architecture
Description	Serine/threonine-protein kinase 10 (EC 2.7.11.1) (Lymphocyte-oriented kinase).

MTR1L_MOUSE
NC score	-0.009590 (rank : 471)	θ value	1.81305 (rank : 322)
Query Neighborhood Hits	426	Target Neighborhood Hits	903	Shared Neighborhood Hits	4
SwissProt Accessions	O88495	Gene names	Gpr50
Domain Architecture
Description	Melatonin-related receptor (G protein-coupled receptor 50) (H9).

MRCKB_HUMAN
NC score	-0.012681 (rank : 472)	θ value	3.0926 (rank : 355)
Query Neighborhood Hits	426	Target Neighborhood Hits	2239	Shared Neighborhood Hits	27
SwissProt Accessions	Q9Y5S2, Q2L7A5, Q86TJ1, Q9ULU5	Gene names	CDC42BPB, KIAA1124
Domain Architecture	No domain graphic available
Description	Serine/threonine-protein kinase MRCK beta (EC 2.7.11.1) (CDC42-binding protein kinase beta) (Myotonic dystrophy kinase-related CDC42-binding kinase beta) (Myotonic dystrophy protein kinase-like beta) (MRCK beta) (DMPK-like beta).