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Network neighborhood for query Sequence : PO3F4_HUMAN

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PO3F4_HUMAN
SwissProt Accessions	P49335, Q5H9G9, Q99410	Gene names	POU3F4, BRN4, OTF9
Domain Architecture
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).
Rank Plots	Jump to hits sorted by θ Jump to hits sorted by NC score

Hits sorted by θ

PO3F4_HUMAN
θ value	0 (rank : 1)	NC score	0.999962 (rank : 1)
Query Neighborhood Hits	297	Target Neighborhood Hits	297	Shared Neighborhood Hits	297
SwissProt Accessions	P49335, Q5H9G9, Q99410	Gene names	POU3F4, BRN4, OTF9
Domain Architecture
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

PO3F4_MOUSE
θ value	0 (rank : 2)	NC score	0.998913 (rank : 2)
Query Neighborhood Hits	297	Target Neighborhood Hits	281	Shared Neighborhood Hits	275
SwissProt Accessions	P62515, P25216	Gene names	Pou3f4, Brn-4, Brn4, Otf9
Domain Architecture	No domain graphic available
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

PO3F2_HUMAN
θ value	1.17728e-108 (rank : 3)	NC score	0.985969 (rank : 3)
Query Neighborhood Hits	297	Target Neighborhood Hits	308	Shared Neighborhood Hits	252
SwissProt Accessions	P20265, Q14960, Q86V54, Q9UJL0	Gene names	POU3F2, BRN2, OCT7, OTF7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

PO3F2_MOUSE
θ value	2.00813e-108 (rank : 4)	NC score	0.985897 (rank : 4)
Query Neighborhood Hits	297	Target Neighborhood Hits	313	Shared Neighborhood Hits	252
SwissProt Accessions	P31360	Gene names	Pou3f2, Brn-2, Brn2, Otf7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

PO3F3_MOUSE
θ value	1.87955e-106 (rank : 5)	NC score	0.985266 (rank : 5)
Query Neighborhood Hits	297	Target Neighborhood Hits	308	Shared Neighborhood Hits	250
SwissProt Accessions	P31361	Gene names	Pou3f3, Brn-1, Brn1, Otf8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

PO3F3_HUMAN
θ value	1.75921e-104 (rank : 6)	NC score	0.985238 (rank : 6)
Query Neighborhood Hits	297	Target Neighborhood Hits	311	Shared Neighborhood Hits	250
SwissProt Accessions	P20264, P78379	Gene names	POU3F3, BRN1, OTF8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

PO3F1_HUMAN
θ value	1.54831e-84 (rank : 7)	NC score	0.984321 (rank : 7)
Query Neighborhood Hits	297	Target Neighborhood Hits	256	Shared Neighborhood Hits	230
SwissProt Accessions	Q03052	Gene names	POU3F1, OCT6, OTF6
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

PO3F1_MOUSE
θ value	4.50487e-84 (rank : 8)	NC score	0.983516 (rank : 8)
Query Neighborhood Hits	297	Target Neighborhood Hits	261	Shared Neighborhood Hits	231
SwissProt Accessions	P21952	Gene names	Pou3f1, Oct6, Otf-6, Otf6, Scip
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

PO2F1_HUMAN
θ value	5.93839e-52 (rank : 9)	NC score	0.931407 (rank : 15)
Query Neighborhood Hits	297	Target Neighborhood Hits	426	Shared Neighborhood Hits	248
SwissProt Accessions	P14859, Q5TBT7, Q6PK46, Q8NEU9, Q9BPV1	Gene names	POU2F1, OCT1, OTF1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

PO2F1_MOUSE
θ value	2.25659e-51 (rank : 10)	NC score	0.932590 (rank : 14)
Query Neighborhood Hits	297	Target Neighborhood Hits	408	Shared Neighborhood Hits	241
SwissProt Accessions	P25425, Q61994, Q63891, Q6Y681, Q7TSD0, Q8BT04, Q8K570, Q99JH0, Q9WTZ4, Q9WTZ5, Q9WTZ6	Gene names	Pou2f1, Oct-1, Otf-1, Otf1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

PO2F3_HUMAN
θ value	1.11993e-50 (rank : 11)	NC score	0.937869 (rank : 11)
Query Neighborhood Hits	297	Target Neighborhood Hits	319	Shared Neighborhood Hits	242
SwissProt Accessions	Q9UKI9, Q9UKR7, Q9Y504	Gene names	POU2F3, OTF11, PLA1
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Transcription factor Skn-1) (PLA-1 protein).

PO2F3_MOUSE
θ value	1.11993e-50 (rank : 12)	NC score	0.935922 (rank : 12)
Query Neighborhood Hits	297	Target Neighborhood Hits	328	Shared Neighborhood Hits	243
SwissProt Accessions	P31362	Gene names	Pou2f3, Epoc1, Oct11, Otf-11, Otf11
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Epoc-1).

PO2F2_HUMAN
θ value	5.55816e-50 (rank : 13)	NC score	0.928106 (rank : 17)
Query Neighborhood Hits	297	Target Neighborhood Hits	379	Shared Neighborhood Hits	238
SwissProt Accessions	P09086, Q16648, Q9BRS4	Gene names	POU2F2, OCT2, OTF2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

PO2F2_MOUSE
θ value	9.48078e-50 (rank : 14)	NC score	0.929636 (rank : 16)
Query Neighborhood Hits	297	Target Neighborhood Hits	353	Shared Neighborhood Hits	235
SwissProt Accessions	Q00196, Q00197, Q00198, Q00199, Q00200, Q00201, Q05882, Q61995, Q61996, Q64245	Gene names	Pou2f2, Oct2, Otf2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

PO5F1_HUMAN
θ value	3.98324e-48 (rank : 15)	NC score	0.926601 (rank : 19)
Query Neighborhood Hits	297	Target Neighborhood Hits	321	Shared Neighborhood Hits	220
SwissProt Accessions	Q01860, P31359, Q15167, Q15168, Q16422	Gene names	POU5F1, OCT3, OCT4, OTF3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4).

PO5F1_MOUSE
θ value	7.51208e-47 (rank : 16)	NC score	0.934475 (rank : 13)
Query Neighborhood Hits	297	Target Neighborhood Hits	305	Shared Neighborhood Hits	222
SwissProt Accessions	P20263, Q63843	Gene names	Pou5f1, Oct-3, Oct-4, Otf-3, Otf3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4) (NF-A3).

PO5FN_HUMAN
θ value	9.81109e-47 (rank : 17)	NC score	0.925522 (rank : 21)
Query Neighborhood Hits	297	Target Neighborhood Hits	134	Shared Neighborhood Hits	101
SwissProt Accessions	Q9BZW0	Gene names	POU5FLC1
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 3.

PO5FM_HUMAN
θ value	1.67352e-46 (rank : 18)	NC score	0.927463 (rank : 18)
Query Neighborhood Hits	297	Target Neighborhood Hits	212	Shared Neighborhood Hits	167
SwissProt Accessions	Q9BZV7	Gene names	POU5F1P1, POU5FLC20
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 2.

PIT1_MOUSE
θ value	6.35935e-46 (rank : 19)	NC score	0.943608 (rank : 9)
Query Neighborhood Hits	297	Target Neighborhood Hits	313	Shared Neighborhood Hits	245
SwissProt Accessions	Q00286	Gene names	Pou1f1, Pit-1, Pit1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

PO5FL_HUMAN
θ value	1.85029e-45 (rank : 20)	NC score	0.926039 (rank : 20)
Query Neighborhood Hits	297	Target Neighborhood Hits	214	Shared Neighborhood Hits	164
SwissProt Accessions	Q06416, Q9BZV9	Gene names	POU5F1P1, OTF3C, POU5FLC8
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 1 (Octamer- binding protein 3-like).

PIT1_HUMAN
θ value	4.122e-45 (rank : 21)	NC score	0.940676 (rank : 10)
Query Neighborhood Hits	297	Target Neighborhood Hits	292	Shared Neighborhood Hits	237
SwissProt Accessions	P28069, O75757, Q15132, Q15133, Q9UEL3	Gene names	POU1F1, GHF1, PIT1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

PO4F1_HUMAN
θ value	1.28434e-38 (rank : 22)	NC score	0.907679 (rank : 24)
Query Neighborhood Hits	297	Target Neighborhood Hits	342	Shared Neighborhood Hits	242
SwissProt Accessions	Q01851, Q14986, Q15318	Gene names	POU4F1, BRN3A, RDC1
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Oct-T1) (Homeobox/POU domain protein RDC-1).

PO4F1_MOUSE
θ value	1.6774e-38 (rank : 23)	NC score	0.910393 (rank : 22)
Query Neighborhood Hits	297	Target Neighborhood Hits	345	Shared Neighborhood Hits	242
SwissProt Accessions	P17208	Gene names	Pou4f1, Brn-3, Brn3, Brn3a
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Brn-3.0).

PO4F2_MOUSE
θ value	4.13158e-37 (rank : 24)	NC score	0.907104 (rank : 25)
Query Neighborhood Hits	297	Target Neighborhood Hits	312	Shared Neighborhood Hits	236
SwissProt Accessions	Q63934, Q63954	Gene names	Pou4f2, Brn3b
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B) (Brn-3.2).

PO4F2_HUMAN
θ value	2.67802e-36 (rank : 25)	NC score	0.905409 (rank : 26)
Query Neighborhood Hits	297	Target Neighborhood Hits	310	Shared Neighborhood Hits	236
SwissProt Accessions	Q12837, Q13883, Q14987	Gene names	POU4F2, BRN3B
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B).

PO4F3_HUMAN
θ value	1.32909e-35 (rank : 26)	NC score	0.901366 (rank : 27)
Query Neighborhood Hits	297	Target Neighborhood Hits	307	Shared Neighborhood Hits	234
SwissProt Accessions	Q15319, O60557	Gene names	POU4F3, BRN3C
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

PO4F3_MOUSE
θ value	1.32909e-35 (rank : 27)	NC score	0.900987 (rank : 28)
Query Neighborhood Hits	297	Target Neighborhood Hits	311	Shared Neighborhood Hits	235
SwissProt Accessions	Q63955	Gene names	Pou4f3, Brn-3c, Brn3c
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

SPRM1_HUMAN
θ value	3.27365e-34 (rank : 28)	NC score	0.909512 (rank : 23)
Query Neighborhood Hits	297	Target Neighborhood Hits	72	Shared Neighborhood Hits	66
SwissProt Accessions	Q8N7G0, Q8N748	Gene names	SPRM1
Domain Architecture
Description	Sperm 1 POU-domain transcription factor (SPRM-1).

SPRM1_MOUSE
θ value	5.22648e-32 (rank : 29)	NC score	0.895875 (rank : 29)
Query Neighborhood Hits	297	Target Neighborhood Hits	73	Shared Neighborhood Hits	59
SwissProt Accessions	Q9DAC9	Gene names	Sprm1
Domain Architecture
Description	Sperm 1 POU-domain transcription factor (SPRM-1).

PO6F1_HUMAN
θ value	9.8567e-31 (rank : 30)	NC score	0.869879 (rank : 30)
Query Neighborhood Hits	297	Target Neighborhood Hits	370	Shared Neighborhood Hits	239
SwissProt Accessions	Q14863	Gene names	POU6F1, BRN5, MPOU, TCFB1
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (mPOU homeobox protein) (Brain-specific homeobox/POU domain protein 5) (Brain-5) (Brn-5 protein).

PO6F1_MOUSE
θ value	4.89182e-30 (rank : 31)	NC score	0.842343 (rank : 31)
Query Neighborhood Hits	297	Target Neighborhood Hits	581	Shared Neighborhood Hits	247
SwissProt Accessions	Q07916, Q91XK3	Gene names	Pou6f1, Emb
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (Octamer-binding transcription factor EMB) (Transcription regulatory protein MCP-1).

PO6F2_HUMAN
θ value	9.87957e-23 (rank : 32)	NC score	0.781705 (rank : 32)
Query Neighborhood Hits	297	Target Neighborhood Hits	618	Shared Neighborhood Hits	248
SwissProt Accessions	P78424, P78425, Q75ME8, Q86UM6, Q9UDS7	Gene names	POU6F2, RPF1
Domain Architecture
Description	POU domain, class 6, transcription factor 2 (Retina-derived POU-domain factor 1) (RPF-1).

PO6F2_MOUSE
θ value	2.87452e-22 (rank : 33)	NC score	0.776315 (rank : 33)
Query Neighborhood Hits	297	Target Neighborhood Hits	639	Shared Neighborhood Hits	253
SwissProt Accessions	Q8BJI4	Gene names	Pou6f2
Domain Architecture	No domain graphic available
Description	POU domain, class 6, transcription factor 2.

LHX5_HUMAN
θ value	2.88788e-06 (rank : 34)	NC score	0.373918 (rank : 34)
Query Neighborhood Hits	297	Target Neighborhood Hits	453	Shared Neighborhood Hits	248
SwissProt Accessions	Q9H2C1	Gene names	LHX5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

LHX5_MOUSE
θ value	3.77169e-06 (rank : 35)	NC score	0.370657 (rank : 35)
Query Neighborhood Hits	297	Target Neighborhood Hits	456	Shared Neighborhood Hits	248
SwissProt Accessions	P61375, P50459	Gene names	Lhx5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

LHX3_HUMAN
θ value	5.44631e-05 (rank : 36)	NC score	0.341068 (rank : 45)
Query Neighborhood Hits	297	Target Neighborhood Hits	474	Shared Neighborhood Hits	247
SwissProt Accessions	Q9UBR4, Q9NZB5, Q9P0I8, Q9P0I9	Gene names	LHX3
Domain Architecture
Description	LIM/homeobox protein Lhx3.

LHX3_MOUSE
θ value	5.44631e-05 (rank : 37)	NC score	0.342383 (rank : 44)
Query Neighborhood Hits	297	Target Neighborhood Hits	451	Shared Neighborhood Hits	247
SwissProt Accessions	P50481, Q61800, Q61801	Gene names	Lhx3, Lim-3, Lim3, Plim
Domain Architecture
Description	LIM/homeobox protein Lhx3 (Homeobox protein LIM-3) (Homeobox protein P-LIM) (LIM homeobox protein 3).

LHX1_HUMAN
θ value	7.1131e-05 (rank : 38)	NC score	0.362864 (rank : 36)
Query Neighborhood Hits	297	Target Neighborhood Hits	453	Shared Neighborhood Hits	246
SwissProt Accessions	P48742, Q3MIW0	Gene names	LHX1, LIM1
Domain Architecture
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

LHX1_MOUSE
θ value	0.000121331 (rank : 39)	NC score	0.359288 (rank : 39)
Query Neighborhood Hits	297	Target Neighborhood Hits	453	Shared Neighborhood Hits	246
SwissProt Accessions	P63006, P36199	Gene names	Lhx1, Lim-1, Lim1
Domain Architecture	No domain graphic available
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

LHX6_MOUSE
θ value	0.000270298 (rank : 40)	NC score	0.258799 (rank : 180)
Query Neighborhood Hits	297	Target Neighborhood Hits	399	Shared Neighborhood Hits	229
SwissProt Accessions	O88706	Gene names	Lhx6
Domain Architecture
Description	LIM/homeobox protein Lhx6.

LHX4_HUMAN
θ value	0.000461057 (rank : 41)	NC score	0.333676 (rank : 48)
Query Neighborhood Hits	297	Target Neighborhood Hits	455	Shared Neighborhood Hits	248
SwissProt Accessions	Q969G2, Q8NHE0, Q8TCJ1, Q8WWX2, Q969W2	Gene names	LHX4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

LHX4_MOUSE
θ value	0.000461057 (rank : 42)	NC score	0.333550 (rank : 49)
Query Neighborhood Hits	297	Target Neighborhood Hits	457	Shared Neighborhood Hits	248
SwissProt Accessions	P53776, O08916, Q9R280	Gene names	Lhx4, Gsh-4, Gsh4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

LHX61_HUMAN
θ value	0.000461057 (rank : 43)	NC score	0.257222 (rank : 183)
Query Neighborhood Hits	297	Target Neighborhood Hits	412	Shared Neighborhood Hits	229
SwissProt Accessions	Q9UPM6, Q5T7S8, Q9NTK3, Q9UPM5	Gene names	LHX6, LHX6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1 (Lhx6).

VAX1_HUMAN
θ value	0.000786445 (rank : 44)	NC score	0.357722 (rank : 41)
Query Neighborhood Hits	297	Target Neighborhood Hits	355	Shared Neighborhood Hits	244
SwissProt Accessions	Q5SQQ9, Q6ZSX0	Gene names	VAX1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

VAX1_MOUSE
θ value	0.000786445 (rank : 45)	NC score	0.358127 (rank : 40)
Query Neighborhood Hits	297	Target Neighborhood Hits	351	Shared Neighborhood Hits	244
SwissProt Accessions	Q2NKI2, O88880	Gene names	Vax1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

HXD12_MOUSE
θ value	0.00102713 (rank : 46)	NC score	0.330077 (rank : 54)
Query Neighborhood Hits	297	Target Neighborhood Hits	370	Shared Neighborhood Hits	246
SwissProt Accessions	P23812	Gene names	Hoxd12, Hox-4.7, Hoxd-12
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4.7) (Hox-5.6).

LHX61_MOUSE
θ value	0.00134147 (rank : 47)	NC score	0.246368 (rank : 210)
Query Neighborhood Hits	297	Target Neighborhood Hits	396	Shared Neighborhood Hits	218
SwissProt Accessions	Q9R1R0, Q9R1R1	Gene names	Lhx6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1.

GBX1_HUMAN
θ value	0.00175202 (rank : 48)	NC score	0.330408 (rank : 53)
Query Neighborhood Hits	297	Target Neighborhood Hits	334	Shared Neighborhood Hits	240
SwissProt Accessions	Q14549	Gene names	GBX1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

VAX2_HUMAN
θ value	0.00175202 (rank : 49)	NC score	0.359587 (rank : 37)
Query Neighborhood Hits	297	Target Neighborhood Hits	337	Shared Neighborhood Hits	244
SwissProt Accessions	Q9UIW0	Gene names	VAX2
Domain Architecture
Description	Ventral anterior homeobox 2.

VAX2_MOUSE
θ value	0.00175202 (rank : 50)	NC score	0.359315 (rank : 38)
Query Neighborhood Hits	297	Target Neighborhood Hits	338	Shared Neighborhood Hits	244
SwissProt Accessions	Q9WTP9	Gene names	Vax2, Vex
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 2 (Ventral retina homeodomain protein).

ZFHX2_HUMAN
θ value	0.00228821 (rank : 51)	NC score	0.331252 (rank : 52)
Query Neighborhood Hits	297	Target Neighborhood Hits	1178	Shared Neighborhood Hits	247
SwissProt Accessions	Q9C0A1	Gene names	ZFHX2, KIAA1762
Domain Architecture
Description	Zinc finger homeobox protein 2.

TLX2_HUMAN
θ value	0.00509761 (rank : 52)	NC score	0.310804 (rank : 72)
Query Neighborhood Hits	297	Target Neighborhood Hits	352	Shared Neighborhood Hits	238
SwissProt Accessions	O43763, Q9UQ48	Gene names	TLX2, HOX11L1, NCX
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Neural crest homeobox protein).

TLX2_MOUSE
θ value	0.00509761 (rank : 53)	NC score	0.310904 (rank : 71)
Query Neighborhood Hits	297	Target Neighborhood Hits	336	Shared Neighborhood Hits	236
SwissProt Accessions	Q61663	Gene names	Tlx2, Hox11l1, Tlx1l1
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Homeobox TLX-2) (PMUR10F).

GBX2_HUMAN
θ value	0.00665767 (rank : 54)	NC score	0.321244 (rank : 57)
Query Neighborhood Hits	297	Target Neighborhood Hits	322	Shared Neighborhood Hits	241
SwissProt Accessions	P52951, O43833, Q53RX5, Q9Y5Y1	Gene names	GBX2
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2).

HMX3_MOUSE
θ value	0.00665767 (rank : 55)	NC score	0.319432 (rank : 60)
Query Neighborhood Hits	297	Target Neighborhood Hits	342	Shared Neighborhood Hits	242
SwissProt Accessions	P42581	Gene names	Hmx3, Nkx-5.1, Nkx5-1
Domain Architecture
Description	Homeobox protein HMX3 (Homeobox protein Nkx-5.1).

HXC12_HUMAN
θ value	0.00869519 (rank : 56)	NC score	0.313859 (rank : 64)
Query Neighborhood Hits	297	Target Neighborhood Hits	313	Shared Neighborhood Hits	238
SwissProt Accessions	P31275, Q9BXJ6	Gene names	HOXC12, HOX3F
Domain Architecture
Description	Homeobox protein Hox-C12 (Hox-3F).

HXC12_MOUSE
θ value	0.00869519 (rank : 57)	NC score	0.311796 (rank : 69)
Query Neighborhood Hits	297	Target Neighborhood Hits	316	Shared Neighborhood Hits	238
SwissProt Accessions	Q8K5B8	Gene names	Hoxc12, Hox-3.8, Hoxc-12
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C12 (Hox-3.8).

ALX3_MOUSE
θ value	0.0113563 (rank : 58)	NC score	0.293470 (rank : 107)
Query Neighborhood Hits	297	Target Neighborhood Hits	386	Shared Neighborhood Hits	245
SwissProt Accessions	O70137	Gene names	Alx3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

DLX2_HUMAN
θ value	0.0113563 (rank : 59)	NC score	0.314061 (rank : 63)
Query Neighborhood Hits	297	Target Neighborhood Hits	355	Shared Neighborhood Hits	247
SwissProt Accessions	Q07687	Gene names	DLX2
Domain Architecture
Description	Homeobox protein DLX-2.

DLX2_MOUSE
θ value	0.0113563 (rank : 60)	NC score	0.312254 (rank : 67)
Query Neighborhood Hits	297	Target Neighborhood Hits	352	Shared Neighborhood Hits	246
SwissProt Accessions	P40764	Gene names	Dlx2, Tes-1, Tes1
Domain Architecture
Description	Homeobox protein DLX-2 (Homeobox protein TES-1).

GBX2_MOUSE
θ value	0.0113563 (rank : 61)	NC score	0.319490 (rank : 59)
Query Neighborhood Hits	297	Target Neighborhood Hits	326	Shared Neighborhood Hits	241
SwissProt Accessions	P48031	Gene names	Gbx2, Mmoxa, Stra7
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2) (Homeobox protein STRA7).

DLX5_HUMAN
θ value	0.0148317 (rank : 62)	NC score	0.310430 (rank : 73)
Query Neighborhood Hits	297	Target Neighborhood Hits	405	Shared Neighborhood Hits	244
SwissProt Accessions	P56178, Q9UPL1	Gene names	DLX5
Domain Architecture
Description	Homeobox protein DLX-5.

DLX5_MOUSE
θ value	0.0148317 (rank : 63)	NC score	0.305118 (rank : 80)
Query Neighborhood Hits	297	Target Neighborhood Hits	434	Shared Neighborhood Hits	245
SwissProt Accessions	P70396, O54876, O54877, O54878, Q9JJ45	Gene names	Dlx5
Domain Architecture
Description	Homeobox protein DLX-5.

GBX1_MOUSE
θ value	0.0148317 (rank : 64)	NC score	0.318626 (rank : 62)
Query Neighborhood Hits	297	Target Neighborhood Hits	350	Shared Neighborhood Hits	240
SwissProt Accessions	P82976, Q8CGW5	Gene names	Gbx1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

MSX2_MOUSE
θ value	0.0148317 (rank : 65)	NC score	0.325172 (rank : 55)
Query Neighborhood Hits	297	Target Neighborhood Hits	345	Shared Neighborhood Hits	241
SwissProt Accessions	Q03358, Q63856	Gene names	Msx2, Hox-8.1, Msx-2
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8.1).

NKX22_MOUSE
θ value	0.0193708 (rank : 66)	NC score	0.297056 (rank : 99)
Query Neighborhood Hits	297	Target Neighborhood Hits	336	Shared Neighborhood Hits	243
SwissProt Accessions	P42586	Gene names	Nkx2-2, Nkx-2.2, Nkx2b
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

NKX31_HUMAN
θ value	0.0193708 (rank : 67)	NC score	0.312580 (rank : 66)
Query Neighborhood Hits	297	Target Neighborhood Hits	331	Shared Neighborhood Hits	240
SwissProt Accessions	Q99801, O15465, Q9H2P4, Q9H2P5, Q9H2P6, Q9H2P7, Q9HBG0	Gene names	NKX3-1, NKX3.1, NKX3A
Domain Architecture
Description	Homeobox protein Nkx-3.1.

HESX1_MOUSE
θ value	0.0252991 (rank : 68)	NC score	0.356331 (rank : 42)
Query Neighborhood Hits	297	Target Neighborhood Hits	331	Shared Neighborhood Hits	245
SwissProt Accessions	Q61658, Q61047	Gene names	Hesx1, Hes-1, Rpx
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (Anterior- restricted homeobox protein) (Rathke pouch homeo box).

HXD12_HUMAN
θ value	0.0252991 (rank : 69)	NC score	0.319066 (rank : 61)
Query Neighborhood Hits	297	Target Neighborhood Hits	334	Shared Neighborhood Hits	245
SwissProt Accessions	P35452, Q9NS03	Gene names	HOXD12, HOX4H
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4H).

MSX2_HUMAN
θ value	0.0252991 (rank : 70)	NC score	0.320900 (rank : 58)
Query Neighborhood Hits	297	Target Neighborhood Hits	337	Shared Neighborhood Hits	240
SwissProt Accessions	P35548	Gene names	MSX2, HOX8
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8).

NKX28_MOUSE
θ value	0.0252991 (rank : 71)	NC score	0.303784 (rank : 83)
Query Neighborhood Hits	297	Target Neighborhood Hits	347	Shared Neighborhood Hits	239
SwissProt Accessions	O70584	Gene names	Nkx2-8, Nkx-2.9, Nkx2-9, Nkx2h
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H) (Homeobox protein Nkx-2.9).

BARX2_HUMAN
θ value	0.0330416 (rank : 72)	NC score	0.275846 (rank : 153)
Query Neighborhood Hits	297	Target Neighborhood Hits	387	Shared Neighborhood Hits	243
SwissProt Accessions	Q9UMQ3, O43518	Gene names	BARX2
Domain Architecture
Description	Homeobox protein BarH-like 2.

BARX2_MOUSE
θ value	0.0330416 (rank : 73)	NC score	0.274758 (rank : 156)
Query Neighborhood Hits	297	Target Neighborhood Hits	335	Shared Neighborhood Hits	242
SwissProt Accessions	O08686	Gene names	Barx2
Domain Architecture
Description	Homeobox protein BarH-like 2.

NKX12_MOUSE
θ value	0.0330416 (rank : 74)	NC score	0.288802 (rank : 120)
Query Neighborhood Hits	297	Target Neighborhood Hits	332	Shared Neighborhood Hits	235
SwissProt Accessions	P42580, Q9JHF2, Q9JKW5, Q9JKW6, Q9JKW9, Q9JKX0, Q9JKX1	Gene names	Nkx1-2, Nkx1.1, Sax1
Domain Architecture
Description	NK1 transcription factor-related protein 2 (Homeobox protein SAX-1) (NKX-1.1).

NKX22_HUMAN
θ value	0.0330416 (rank : 75)	NC score	0.292751 (rank : 109)
Query Neighborhood Hits	297	Target Neighborhood Hits	342	Shared Neighborhood Hits	243
SwissProt Accessions	O95096	Gene names	NKX2-2, NKX2.2, NKX2B
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

NKX28_HUMAN
θ value	0.0330416 (rank : 76)	NC score	0.290501 (rank : 113)
Query Neighborhood Hits	297	Target Neighborhood Hits	352	Shared Neighborhood Hits	242
SwissProt Accessions	O15522	Gene names	NKX2-8, NKX-2.8, NKX2G, NKX2H
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H).

ALX3_HUMAN
θ value	0.0431538 (rank : 77)	NC score	0.289923 (rank : 115)
Query Neighborhood Hits	297	Target Neighborhood Hits	380	Shared Neighborhood Hits	245
SwissProt Accessions	O95076, O95075	Gene names	ALX3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

ATBF1_HUMAN
θ value	0.0431538 (rank : 78)	NC score	0.226945 (rank : 248)
Query Neighborhood Hits	297	Target Neighborhood Hits	1547	Shared Neighborhood Hits	262
SwissProt Accessions	Q15911, O15101, Q13719	Gene names	ATBF1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

BARH2_HUMAN
θ value	0.0431538 (rank : 79)	NC score	0.286281 (rank : 127)
Query Neighborhood Hits	297	Target Neighborhood Hits	419	Shared Neighborhood Hits	242
SwissProt Accessions	Q9NY43, Q7Z4N7	Gene names	BARHL2
Domain Architecture
Description	BarH-like 2 homeobox protein.

BARH2_MOUSE
θ value	0.0431538 (rank : 80)	NC score	0.282815 (rank : 133)
Query Neighborhood Hits	297	Target Neighborhood Hits	397	Shared Neighborhood Hits	243
SwissProt Accessions	Q8VIB5, Q66L43	Gene names	Barhl2, Barh1, Mbh1
Domain Architecture	No domain graphic available
Description	BarH-like 2 homeobox protein (Bar-class homeodomain protein MBH1) (Homeobox protein B-H1).

HXC11_HUMAN
θ value	0.0431538 (rank : 81)	NC score	0.275203 (rank : 155)
Query Neighborhood Hits	297	Target Neighborhood Hits	349	Shared Neighborhood Hits	242
SwissProt Accessions	O43248, Q96DH2	Gene names	HOXC11
Domain Architecture
Description	Homeobox protein Hox-C11.

NKX31_MOUSE
θ value	0.0431538 (rank : 82)	NC score	0.301599 (rank : 89)
Query Neighborhood Hits	297	Target Neighborhood Hits	379	Shared Neighborhood Hits	242
SwissProt Accessions	P97436, O09087	Gene names	Nkx3-1, Nkx-3.1, Nkx3a
Domain Architecture
Description	Homeobox protein Nkx-3.1.

ALX4_HUMAN
θ value	0.0563607 (rank : 83)	NC score	0.285573 (rank : 128)
Query Neighborhood Hits	297	Target Neighborhood Hits	394	Shared Neighborhood Hits	246
SwissProt Accessions	Q9H161, Q96JN7, Q9H198, Q9HAY9	Gene names	ALX4, KIAA1788
Domain Architecture
Description	Homeobox protein aristaless-like 4.

BARH1_HUMAN
θ value	0.0563607 (rank : 84)	NC score	0.282112 (rank : 136)
Query Neighborhood Hits	297	Target Neighborhood Hits	373	Shared Neighborhood Hits	243
SwissProt Accessions	Q9BZE3, Q9NY88	Gene names	BARHL1
Domain Architecture
Description	BarH-like 1 homeobox protein.

BARH1_MOUSE
θ value	0.0563607 (rank : 85)	NC score	0.283681 (rank : 131)
Query Neighborhood Hits	297	Target Neighborhood Hits	350	Shared Neighborhood Hits	243
SwissProt Accessions	P63157, Q9JK26	Gene names	Barhl1, Bhx1, Mbh2
Domain Architecture	No domain graphic available
Description	BarH-like 1 homeobox protein (Bar-class homeodomain protein MBH2) (BarH-related homeobox protein 1).

CRX_HUMAN
θ value	0.0563607 (rank : 86)	NC score	0.311892 (rank : 68)
Query Neighborhood Hits	297	Target Neighborhood Hits	360	Shared Neighborhood Hits	245
SwissProt Accessions	O43186	Gene names	CRX, CORD2
Domain Architecture
Description	Cone-rod homeobox protein.

DLX6_HUMAN
θ value	0.0563607 (rank : 87)	NC score	0.298357 (rank : 97)
Query Neighborhood Hits	297	Target Neighborhood Hits	341	Shared Neighborhood Hits	244
SwissProt Accessions	P56179, Q3ZAR6, Q9UPL2	Gene names	DLX6
Domain Architecture
Description	Homeobox protein DLX-6.

ESX1L_HUMAN
θ value	0.0563607 (rank : 88)	NC score	0.336621 (rank : 46)
Query Neighborhood Hits	297	Target Neighborhood Hits	498	Shared Neighborhood Hits	252
SwissProt Accessions	Q8N693, Q7Z6K7	Gene names	ESX1L, ESX1R
Domain Architecture
Description	Extraembryonic, spermatogenesis, homeobox 1-like protein.

HESX1_HUMAN
θ value	0.0563607 (rank : 89)	NC score	0.347324 (rank : 43)
Query Neighborhood Hits	297	Target Neighborhood Hits	326	Shared Neighborhood Hits	245
SwissProt Accessions	Q9UBX0, Q99667	Gene names	HESX1, HANF
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (hAnf).

HMX2_MOUSE
θ value	0.0563607 (rank : 90)	NC score	0.311075 (rank : 70)
Query Neighborhood Hits	297	Target Neighborhood Hits	354	Shared Neighborhood Hits	241
SwissProt Accessions	P43687, Q8R1Q2	Gene names	Hmx2, Nkx-5.2, Nkx5-2
Domain Architecture
Description	Homeobox protein HMX2 (Homeobox protein Nkx-5.2).

MSX1_HUMAN
θ value	0.0563607 (rank : 91)	NC score	0.308509 (rank : 74)
Query Neighborhood Hits	297	Target Neighborhood Hits	374	Shared Neighborhood Hits	240
SwissProt Accessions	P28360, Q96NY4	Gene names	MSX1, HOX7
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7).

PAX4_HUMAN
θ value	0.0563607 (rank : 92)	NC score	0.288799 (rank : 121)
Query Neighborhood Hits	297	Target Neighborhood Hits	367	Shared Neighborhood Hits	246
SwissProt Accessions	O43316, O95161, Q6B0H0	Gene names	PAX4
Domain Architecture
Description	Paired box protein Pax-4.

ATBF1_MOUSE
θ value	0.0736092 (rank : 93)	NC score	0.221780 (rank : 256)
Query Neighborhood Hits	297	Target Neighborhood Hits	1841	Shared Neighborhood Hits	262
SwissProt Accessions	Q61329	Gene names	Atbf1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

BSH_MOUSE
θ value	0.0736092 (rank : 94)	NC score	0.308066 (rank : 75)
Query Neighborhood Hits	297	Target Neighborhood Hits	349	Shared Neighborhood Hits	245
SwissProt Accessions	Q810B3	Gene names	Bsx
Domain Architecture	No domain graphic available
Description	Brain-specific homeobox protein homolog.

CRX_MOUSE
θ value	0.0736092 (rank : 95)	NC score	0.312585 (rank : 65)
Query Neighborhood Hits	297	Target Neighborhood Hits	359	Shared Neighborhood Hits	248
SwissProt Accessions	O54751	Gene names	Crx
Domain Architecture
Description	Cone-rod homeobox protein.

DLX3_HUMAN
θ value	0.0736092 (rank : 96)	NC score	0.306363 (rank : 79)
Query Neighborhood Hits	297	Target Neighborhood Hits	369	Shared Neighborhood Hits	248
SwissProt Accessions	O60479	Gene names	DLX3
Domain Architecture
Description	Homeobox protein DLX-3.

DLX3_MOUSE
θ value	0.0736092 (rank : 97)	NC score	0.306397 (rank : 78)
Query Neighborhood Hits	297	Target Neighborhood Hits	367	Shared Neighborhood Hits	247
SwissProt Accessions	Q64205	Gene names	Dlx3
Domain Architecture
Description	Homeobox protein DLX-3.

NKX32_HUMAN
θ value	0.0736092 (rank : 98)	NC score	0.290067 (rank : 114)
Query Neighborhood Hits	297	Target Neighborhood Hits	323	Shared Neighborhood Hits	236
SwissProt Accessions	P78367	Gene names	BAPX1, NKX3B
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

NKX32_MOUSE
θ value	0.0736092 (rank : 99)	NC score	0.292967 (rank : 108)
Query Neighborhood Hits	297	Target Neighborhood Hits	326	Shared Neighborhood Hits	236
SwissProt Accessions	P97503	Gene names	Bapx1, Nkx-3.2, Nkx3-2, Nkx3b
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

TLX3_HUMAN
θ value	0.0736092 (rank : 100)	NC score	0.282890 (rank : 132)
Query Neighborhood Hits	297	Target Neighborhood Hits	403	Shared Neighborhood Hits	239
SwissProt Accessions	O43711, Q96AD3	Gene names	TLX3, HOX11L2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox protein Hox-11L2).

TLX3_MOUSE
θ value	0.0736092 (rank : 101)	NC score	0.282144 (rank : 135)
Query Neighborhood Hits	297	Target Neighborhood Hits	346	Shared Neighborhood Hits	240
SwissProt Accessions	O55144	Gene names	Tlx3, Hox11l2, Rnx, Tlx1l2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox TLX-3) (Homeobox protein Hox-11L2) (Respiratory neuron homeobox protein).

EMX2_HUMAN
θ value	0.0961366 (rank : 102)	NC score	0.294428 (rank : 106)
Query Neighborhood Hits	297	Target Neighborhood Hits	341	Shared Neighborhood Hits	241
SwissProt Accessions	Q04743, Q96NN8, Q9BQF4	Gene names	EMX2
Domain Architecture
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

EMX2_MOUSE
θ value	0.0961366 (rank : 103)	NC score	0.294707 (rank : 105)
Query Neighborhood Hits	297	Target Neighborhood Hits	340	Shared Neighborhood Hits	243
SwissProt Accessions	Q04744, Q80UE7	Gene names	Emx2, Emx-2
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

TLX1_HUMAN
θ value	0.0961366 (rank : 104)	NC score	0.278512 (rank : 147)
Query Neighborhood Hits	297	Target Neighborhood Hits	347	Shared Neighborhood Hits	238
SwissProt Accessions	P31314, O75699, Q9HCA0	Gene names	TLX1, HOX11, TCL3
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (TCL-3 proto-oncogene).

TLX1_MOUSE
θ value	0.0961366 (rank : 105)	NC score	0.279019 (rank : 141)
Query Neighborhood Hits	297	Target Neighborhood Hits	347	Shared Neighborhood Hits	239
SwissProt Accessions	P43345	Gene names	Tlx1, Hox11, Tlx-1
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (Homeobox TLX-1).

AFAD_HUMAN
θ value	0.125558 (rank : 106)	NC score	0.023205 (rank : 354)
Query Neighborhood Hits	297	Target Neighborhood Hits	689	Shared Neighborhood Hits	15
SwissProt Accessions	P55196, O75087, O75088, O75089, Q5TIG6, Q9NSN7, Q9NU92	Gene names	MLLT4, AF6
Domain Architecture
Description	Afadin (Protein AF-6).

ALX4_MOUSE
θ value	0.125558 (rank : 107)	NC score	0.279217 (rank : 140)
Query Neighborhood Hits	297	Target Neighborhood Hits	369	Shared Neighborhood Hits	244
SwissProt Accessions	O35137	Gene names	Alx4
Domain Architecture
Description	Homeobox protein aristaless-like 4 (ALX-4).

GSC_HUMAN
θ value	0.125558 (rank : 108)	NC score	0.333309 (rank : 50)
Query Neighborhood Hits	297	Target Neighborhood Hits	369	Shared Neighborhood Hits	249
SwissProt Accessions	P56915, Q86YR1	Gene names	GSC
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid.

GSC_MOUSE
θ value	0.125558 (rank : 109)	NC score	0.332950 (rank : 51)
Query Neighborhood Hits	297	Target Neighborhood Hits	368	Shared Neighborhood Hits	249
SwissProt Accessions	Q02591	Gene names	Gsc
Domain Architecture
Description	Homeobox protein goosecoid.

HXB8_HUMAN
θ value	0.125558 (rank : 110)	NC score	0.240161 (rank : 228)
Query Neighborhood Hits	297	Target Neighborhood Hits	324	Shared Neighborhood Hits	239
SwissProt Accessions	P17481, Q9H1I2	Gene names	HOXB8, HOX2D
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4).

HXB8_MOUSE
θ value	0.125558 (rank : 111)	NC score	0.240155 (rank : 229)
Query Neighborhood Hits	297	Target Neighborhood Hits	325	Shared Neighborhood Hits	239
SwissProt Accessions	P09632	Gene names	Hoxb8, Hox-2.4, Hoxb-8
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2.4).

ISL2_MOUSE
θ value	0.125558 (rank : 112)	NC score	0.244161 (rank : 215)
Query Neighborhood Hits	297	Target Neighborhood Hits	426	Shared Neighborhood Hits	236
SwissProt Accessions	Q9CXV0	Gene names	Isl2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

LMX1A_HUMAN
θ value	0.125558 (rank : 113)	NC score	0.274376 (rank : 157)
Query Neighborhood Hits	297	Target Neighborhood Hits	406	Shared Neighborhood Hits	235
SwissProt Accessions	Q8TE12, Q8TE11	Gene names	LMX1A
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

LMX1A_MOUSE
θ value	0.125558 (rank : 114)	NC score	0.273086 (rank : 159)
Query Neighborhood Hits	297	Target Neighborhood Hits	405	Shared Neighborhood Hits	236
SwissProt Accessions	Q9JKU8	Gene names	Lmx1a
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

LMX1B_HUMAN
θ value	0.125558 (rank : 115)	NC score	0.278972 (rank : 142)
Query Neighborhood Hits	297	Target Neighborhood Hits	404	Shared Neighborhood Hits	230
SwissProt Accessions	O60663, O75463	Gene names	LMX1B
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

LMX1B_MOUSE
θ value	0.125558 (rank : 116)	NC score	0.278618 (rank : 145)
Query Neighborhood Hits	297	Target Neighborhood Hits	394	Shared Neighborhood Hits	230
SwissProt Accessions	O88609	Gene names	Lmx1b
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

NKX25_HUMAN
θ value	0.125558 (rank : 117)	NC score	0.299162 (rank : 91)
Query Neighborhood Hits	297	Target Neighborhood Hits	338	Shared Neighborhood Hits	242
SwissProt Accessions	P52952	Gene names	NKX2-5, CSX, NKX2.5, NKX2E
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

PAX4_MOUSE
θ value	0.125558 (rank : 118)	NC score	0.288778 (rank : 122)
Query Neighborhood Hits	297	Target Neighborhood Hits	370	Shared Neighborhood Hits	246
SwissProt Accessions	P32115, P97341, Q9QUR1, Q9R091	Gene names	Pax4, Pax-4
Domain Architecture
Description	Paired box protein Pax-4.

EMX1_HUMAN
θ value	0.163984 (rank : 119)	NC score	0.295864 (rank : 103)
Query Neighborhood Hits	297	Target Neighborhood Hits	336	Shared Neighborhood Hits	242
SwissProt Accessions	Q04741, Q86XB0	Gene names	EMX1
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty spiracles- like protein 1).

GSCL_HUMAN
θ value	0.163984 (rank : 120)	NC score	0.334744 (rank : 47)
Query Neighborhood Hits	297	Target Neighborhood Hits	343	Shared Neighborhood Hits	247
SwissProt Accessions	O15499	Gene names	GSCL
Domain Architecture
Description	Homeobox protein goosecoid-like (GSC-2).

OTX1_MOUSE
θ value	0.163984 (rank : 121)	NC score	0.290504 (rank : 112)
Query Neighborhood Hits	297	Target Neighborhood Hits	372	Shared Neighborhood Hits	245
SwissProt Accessions	P80205	Gene names	Otx1, Otx-1
Domain Architecture
Description	Homeobox protein OTX1.

TCF8_HUMAN
θ value	0.163984 (rank : 122)	NC score	0.033540 (rank : 350)
Query Neighborhood Hits	297	Target Neighborhood Hits	1057	Shared Neighborhood Hits	48
SwissProt Accessions	P37275, Q12924, Q13800	Gene names	TCF8, AREB6
Domain Architecture
Description	Transcription factor 8 (NIL-2-A zinc finger protein) (Negative regulator of IL2).

EVX1_HUMAN
θ value	0.21417 (rank : 123)	NC score	0.303533 (rank : 84)
Query Neighborhood Hits	297	Target Neighborhood Hits	349	Shared Neighborhood Hits	246
SwissProt Accessions	P49640	Gene names	EVX1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

EVX1_MOUSE
θ value	0.21417 (rank : 124)	NC score	0.302811 (rank : 86)
Query Neighborhood Hits	297	Target Neighborhood Hits	350	Shared Neighborhood Hits	245
SwissProt Accessions	P23683	Gene names	Evx1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

GMIP_HUMAN
θ value	0.21417 (rank : 125)	NC score	0.013543 (rank : 365)
Query Neighborhood Hits	297	Target Neighborhood Hits	225	Shared Neighborhood Hits	4
SwissProt Accessions	Q9P107	Gene names	GMIP
Domain Architecture	No domain graphic available
Description	GEM-interacting protein (GMIP).

HXA1_HUMAN
θ value	0.21417 (rank : 126)	NC score	0.256564 (rank : 186)
Query Neighborhood Hits	297	Target Neighborhood Hits	334	Shared Neighborhood Hits	238
SwissProt Accessions	P49639, O43363	Gene names	HOXA1, HOX1F
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1F).

HXA2_HUMAN
θ value	0.21417 (rank : 127)	NC score	0.249172 (rank : 202)
Query Neighborhood Hits	297	Target Neighborhood Hits	370	Shared Neighborhood Hits	238
SwissProt Accessions	O43364	Gene names	HOXA2
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A2.

HXA2_MOUSE
θ value	0.21417 (rank : 128)	NC score	0.252451 (rank : 195)
Query Neighborhood Hits	297	Target Neighborhood Hits	338	Shared Neighborhood Hits	238
SwissProt Accessions	P31245, Q149U3, Q920T8	Gene names	Hoxa2, Hox-1.11, Hoxa-2
Domain Architecture
Description	Homeobox protein Hox-A2 (Hox-1.11) (Hox1.11).

HXB2_HUMAN
θ value	0.21417 (rank : 129)	NC score	0.255884 (rank : 187)
Query Neighborhood Hits	297	Target Neighborhood Hits	367	Shared Neighborhood Hits	234
SwissProt Accessions	P14652, P10913, P17485	Gene names	HOXB2, HOX2H
Domain Architecture
Description	Homeobox protein Hox-B2 (Hox-2H) (Hox-2.8) (K8).

ISL1_HUMAN
θ value	0.21417 (rank : 130)	NC score	0.250310 (rank : 198)
Query Neighborhood Hits	297	Target Neighborhood Hits	421	Shared Neighborhood Hits	237
SwissProt Accessions	P61371, P20663, P47894	Gene names	ISL1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

ISL1_MOUSE
θ value	0.21417 (rank : 131)	NC score	0.250310 (rank : 199)
Query Neighborhood Hits	297	Target Neighborhood Hits	421	Shared Neighborhood Hits	237
SwissProt Accessions	P61372, P20663, P47894, Q812D8	Gene names	Isl1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

MSX1_MOUSE
θ value	0.21417 (rank : 132)	NC score	0.302553 (rank : 87)
Query Neighborhood Hits	297	Target Neighborhood Hits	322	Shared Neighborhood Hits	238
SwissProt Accessions	P13297	Gene names	Msx1, Hox7, Hox7.1
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7) (Hox- 7.1).

OTX1_HUMAN
θ value	0.21417 (rank : 133)	NC score	0.291317 (rank : 110)
Query Neighborhood Hits	297	Target Neighborhood Hits	379	Shared Neighborhood Hits	246
SwissProt Accessions	P32242, Q53TG6	Gene names	OTX1
Domain Architecture
Description	Homeobox protein OTX1.

PRRX1_HUMAN
θ value	0.21417 (rank : 134)	NC score	0.298465 (rank : 95)
Query Neighborhood Hits	297	Target Neighborhood Hits	347	Shared Neighborhood Hits	244
SwissProt Accessions	P54821, O60807	Gene names	PRRX1, PMX1
Domain Architecture
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein PHOX1).

PRRX1_MOUSE
θ value	0.21417 (rank : 135)	NC score	0.298443 (rank : 96)
Query Neighborhood Hits	297	Target Neighborhood Hits	346	Shared Neighborhood Hits	244
SwissProt Accessions	P63013, P43271, Q02810	Gene names	Prrx1, Pmx, Pmx1
Domain Architecture	No domain graphic available
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein mHox) (Homeobox protein K-2).

PRRX2_HUMAN
θ value	0.21417 (rank : 136)	NC score	0.307376 (rank : 76)
Query Neighborhood Hits	297	Target Neighborhood Hits	348	Shared Neighborhood Hits	244
SwissProt Accessions	Q99811, Q9UIB3	Gene names	PRRX2, PMX2, PRX2
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Paired-related homeobox protein 2).

DLX1_HUMAN
θ value	0.279714 (rank : 137)	NC score	0.296851 (rank : 100)
Query Neighborhood Hits	297	Target Neighborhood Hits	343	Shared Neighborhood Hits	244
SwissProt Accessions	P56177, Q53ZU4, Q8IYB2	Gene names	DLX1
Domain Architecture
Description	Homeobox protein DLX-1.

DLX1_MOUSE
θ value	0.279714 (rank : 138)	NC score	0.295235 (rank : 104)
Query Neighborhood Hits	297	Target Neighborhood Hits	343	Shared Neighborhood Hits	244
SwissProt Accessions	Q64317	Gene names	Dlx1
Domain Architecture
Description	Homeobox protein DLX-1.

HXA1_MOUSE
θ value	0.279714 (rank : 139)	NC score	0.260617 (rank : 176)
Query Neighborhood Hits	297	Target Neighborhood Hits	341	Shared Neighborhood Hits	239
SwissProt Accessions	P09022, P15463	Gene names	Hoxa1, Era-1, Hox-1.6, Hoxa-1
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399).

HXB2_MOUSE
θ value	0.279714 (rank : 140)	NC score	0.260556 (rank : 178)
Query Neighborhood Hits	297	Target Neighborhood Hits	350	Shared Neighborhood Hits	234
SwissProt Accessions	P0C1T1	Gene names	Hoxb2, Hox-2.8
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-B2 (Hox-2.8).

MSX3_MOUSE
θ value	0.279714 (rank : 141)	NC score	0.302400 (rank : 88)
Query Neighborhood Hits	297	Target Neighborhood Hits	330	Shared Neighborhood Hits	242
SwissProt Accessions	P70354, P70246, Q03360, Q80W10	Gene names	Msx3, Msx-3
Domain Architecture
Description	Homeobox protein MSX-3.

NKX23_HUMAN
θ value	0.279714 (rank : 142)	NC score	0.289252 (rank : 117)
Query Neighborhood Hits	297	Target Neighborhood Hits	346	Shared Neighborhood Hits	246
SwissProt Accessions	Q8TAU0, Q9NYS6	Gene names	NKX2-3, NKX23, NKX2C
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NKX-2.3) (Homeobox protein NK-2 homolog C).

NKX23_MOUSE
θ value	0.279714 (rank : 143)	NC score	0.286626 (rank : 126)
Query Neighborhood Hits	297	Target Neighborhood Hits	340	Shared Neighborhood Hits	247
SwissProt Accessions	P97334, Q9QZ60, Q9WV67	Gene names	Nkx2-3, Nkx-2.3, Nkx2c
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NK-2 homolog C) (Nkx2-C) (Homeobox protein NK-2 homolog 3).

NKX25_MOUSE
θ value	0.279714 (rank : 144)	NC score	0.289146 (rank : 118)
Query Neighborhood Hits	297	Target Neighborhood Hits	347	Shared Neighborhood Hits	243
SwissProt Accessions	P42582, P97335	Gene names	Nkx2-5, Csx, Nkx-2.5, Nkx2e
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

NKX26_MOUSE
θ value	0.279714 (rank : 145)	NC score	0.288924 (rank : 119)
Query Neighborhood Hits	297	Target Neighborhood Hits	343	Shared Neighborhood Hits	243
SwissProt Accessions	P43688	Gene names	Nkx2-6, Nkx-2.6, Nkx2f
Domain Architecture
Description	Homeobox protein Nkx-2.6 (Homeobox protein NK-2 homolog F).

ARX_MOUSE
θ value	0.365318 (rank : 146)	NC score	0.305075 (rank : 81)
Query Neighborhood Hits	297	Target Neighborhood Hits	398	Shared Neighborhood Hits	246
SwissProt Accessions	O35085, Q9QYT4	Gene names	Arx
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

CUTL1_HUMAN
θ value	0.365318 (rank : 147)	NC score	0.109512 (rank : 309)
Query Neighborhood Hits	297	Target Neighborhood Hits	1574	Shared Neighborhood Hits	178
SwissProt Accessions	P39880, Q6NYH4, Q9UEV5	Gene names	CUTL1
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP).

DLX4_MOUSE
θ value	0.365318 (rank : 148)	NC score	0.278552 (rank : 146)
Query Neighborhood Hits	297	Target Neighborhood Hits	352	Shared Neighborhood Hits	242
SwissProt Accessions	P70436, Q3UM51, Q8R4I3	Gene names	Dlx4, Dlx7
Domain Architecture
Description	Homeobox protein DLX-4 (DLX-7).

GSCL_MOUSE
θ value	0.365318 (rank : 149)	NC score	0.322642 (rank : 56)
Query Neighborhood Hits	297	Target Neighborhood Hits	339	Shared Neighborhood Hits	245
SwissProt Accessions	P56916	Gene names	Gscl
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid-like (GSC-2).

PRRX2_MOUSE
θ value	0.365318 (rank : 150)	NC score	0.304547 (rank : 82)
Query Neighborhood Hits	297	Target Neighborhood Hits	351	Shared Neighborhood Hits	244
SwissProt Accessions	Q06348, Q61651	Gene names	Prrx2, Prx2, S8
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Homeobox protein S8).

RERE_HUMAN
θ value	0.365318 (rank : 151)	NC score	0.024508 (rank : 352)
Query Neighborhood Hits	297	Target Neighborhood Hits	779	Shared Neighborhood Hits	36
SwissProt Accessions	Q9P2R6, O43393, O75046, O75359, Q5VXL9, Q6P6B9, Q9Y2W4	Gene names	RERE, ARG, ARP, ATN1L, KIAA0458
Domain Architecture	No domain graphic available
Description	Arginine-glutamic acid dipeptide repeats protein (Atrophin-1-like protein) (Atrophin-1-related protein).

ADNP_HUMAN
θ value	0.47712 (rank : 152)	NC score	0.084351 (rank : 328)
Query Neighborhood Hits	297	Target Neighborhood Hits	265	Shared Neighborhood Hits	33
SwissProt Accessions	Q9H2P0, O94881, Q9UG34	Gene names	ADNP, KIAA0784
Domain Architecture
Description	Activity-dependent neuroprotector (Activity-dependent neuroprotective protein).

EVX2_MOUSE
θ value	0.47712 (rank : 153)	NC score	0.298921 (rank : 93)
Query Neighborhood Hits	297	Target Neighborhood Hits	327	Shared Neighborhood Hits	243
SwissProt Accessions	P49749	Gene names	Evx2, Evx-2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

ISL2_HUMAN
θ value	0.47712 (rank : 154)	NC score	0.240742 (rank : 227)
Query Neighborhood Hits	297	Target Neighborhood Hits	435	Shared Neighborhood Hits	241
SwissProt Accessions	Q96A47	Gene names	ISL2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

PRRXL_MOUSE
θ value	0.47712 (rank : 155)	NC score	0.299050 (rank : 92)
Query Neighborhood Hits	297	Target Neighborhood Hits	350	Shared Neighborhood Hits	244
SwissProt Accessions	Q8BYH0, Q8K3F8	Gene names	Prrxl1, Drg11
Domain Architecture	No domain graphic available
Description	Paired-related homeobox protein-like 1 (Dorsal root ganglion 11) (Homeobox protein DRG11).

CART1_HUMAN
θ value	0.62314 (rank : 156)	NC score	0.269939 (rank : 166)
Query Neighborhood Hits	297	Target Neighborhood Hits	348	Shared Neighborhood Hits	242
SwissProt Accessions	Q15699, Q546C8, Q96FH4	Gene names	CART1
Domain Architecture
Description	Cartilage homeoprotein 1 (CART-1).

CDX2_MOUSE
θ value	0.62314 (rank : 157)	NC score	0.244039 (rank : 216)
Query Neighborhood Hits	297	Target Neighborhood Hits	336	Shared Neighborhood Hits	238
SwissProt Accessions	P43241	Gene names	Cdx2, Cdx-2
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2).

CUTL1_MOUSE
θ value	0.62314 (rank : 158)	NC score	0.112119 (rank : 307)
Query Neighborhood Hits	297	Target Neighborhood Hits	1620	Shared Neighborhood Hits	185
SwissProt Accessions	P53564, O08994, P70301, Q571L6, Q91ZD2	Gene names	Cutl1, Cux, Cux1, Kiaa4047
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP) (Homeobox protein Cux).

EVX2_HUMAN
θ value	0.62314 (rank : 159)	NC score	0.296276 (rank : 102)
Query Neighborhood Hits	297	Target Neighborhood Hits	325	Shared Neighborhood Hits	242
SwissProt Accessions	Q03828	Gene names	EVX2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

HXB1_MOUSE
θ value	0.62314 (rank : 160)	NC score	0.261885 (rank : 173)
Query Neighborhood Hits	297	Target Neighborhood Hits	341	Shared Neighborhood Hits	239
SwissProt Accessions	P17919, Q3ZAY6, Q9CYH3	Gene names	Hoxb1, Hox-2.9, Hoxb-1
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2.9).

HXD10_HUMAN
θ value	0.62314 (rank : 161)	NC score	0.235729 (rank : 238)
Query Neighborhood Hits	297	Target Neighborhood Hits	392	Shared Neighborhood Hits	238
SwissProt Accessions	P28358	Gene names	HOXD10, HOX4D
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4D) (Hox-4E).

HXD10_MOUSE
θ value	0.62314 (rank : 162)	NC score	0.235800 (rank : 237)
Query Neighborhood Hits	297	Target Neighborhood Hits	392	Shared Neighborhood Hits	238
SwissProt Accessions	P28359, Q91WU9	Gene names	Hoxd10, Hox-4.5, Hoxd-10
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4.5) (Hox-5.3).

NKX24_HUMAN
θ value	0.62314 (rank : 163)	NC score	0.281709 (rank : 137)
Query Neighborhood Hits	297	Target Neighborhood Hits	366	Shared Neighborhood Hits	245
SwissProt Accessions	Q9H2Z4	Gene names	NKX2-4, NKX2D
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

RX_HUMAN
θ value	0.62314 (rank : 164)	NC score	0.281703 (rank : 138)
Query Neighborhood Hits	297	Target Neighborhood Hits	423	Shared Neighborhood Hits	246
SwissProt Accessions	Q9Y2V3	Gene names	RAX, RX
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

ADNP_MOUSE
θ value	0.813845 (rank : 165)	NC score	0.080100 (rank : 329)
Query Neighborhood Hits	297	Target Neighborhood Hits	232	Shared Neighborhood Hits	37
SwissProt Accessions	Q9Z103	Gene names	Adnp
Domain Architecture
Description	Activity-dependent neuroprotector (Activity-dependent neuroprotective protein).

ARX_HUMAN
θ value	0.813845 (rank : 166)	NC score	0.301156 (rank : 90)
Query Neighborhood Hits	297	Target Neighborhood Hits	401	Shared Neighborhood Hits	245
SwissProt Accessions	Q96QS3	Gene names	ARX
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

CDX1_HUMAN
θ value	0.813845 (rank : 167)	NC score	0.242849 (rank : 220)
Query Neighborhood Hits	297	Target Neighborhood Hits	382	Shared Neighborhood Hits	235
SwissProt Accessions	P47902, Q4VAU4, Q9NYK8	Gene names	CDX1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

CDX1_MOUSE
θ value	0.813845 (rank : 168)	NC score	0.239681 (rank : 230)
Query Neighborhood Hits	297	Target Neighborhood Hits	379	Shared Neighborhood Hits	231
SwissProt Accessions	P18111, Q8VCF7	Gene names	Cdx1, Cdx-1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

CDX4_HUMAN
θ value	0.813845 (rank : 169)	NC score	0.260469 (rank : 179)
Query Neighborhood Hits	297	Target Neighborhood Hits	366	Shared Neighborhood Hits	246
SwissProt Accessions	O14627, Q5JS20	Gene names	CDX4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

DUX4_HUMAN
θ value	0.813845 (rank : 170)	NC score	0.266968 (rank : 167)
Query Neighborhood Hits	297	Target Neighborhood Hits	403	Shared Neighborhood Hits	242
SwissProt Accessions	Q9UBX2	Gene names	DUX4, DUX10
Domain Architecture	No domain graphic available
Description	Double homeobox protein 4 (Double homeobox protein 10) (Double homeobox protein 4/10).

FOXC2_HUMAN
θ value	0.813845 (rank : 171)	NC score	0.006417 (rank : 376)
Query Neighborhood Hits	297	Target Neighborhood Hits	236	Shared Neighborhood Hits	14
SwissProt Accessions	Q99958	Gene names	FOXC2, FKHL14, MFH1
Domain Architecture
Description	Forkhead box protein C2 (Forkhead-related protein FKHL14) (Mesenchyme fork head protein 1) (MFH-1 protein) (Transcription factor FKH-14).

HLXB9_MOUSE
θ value	0.813845 (rank : 172)	NC score	0.272797 (rank : 161)
Query Neighborhood Hits	297	Target Neighborhood Hits	354	Shared Neighborhood Hits	243
SwissProt Accessions	Q9QZW9	Gene names	Hlxb9
Domain Architecture
Description	Homeobox protein HB9.

HXB4_HUMAN
θ value	0.813845 (rank : 173)	NC score	0.244669 (rank : 214)
Query Neighborhood Hits	297	Target Neighborhood Hits	376	Shared Neighborhood Hits	243
SwissProt Accessions	P17483, Q9NTA0	Gene names	HOXB4, HOX2F
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2F) (Hox-2.6).

HXB4_MOUSE
θ value	0.813845 (rank : 174)	NC score	0.243967 (rank : 217)
Query Neighborhood Hits	297	Target Neighborhood Hits	375	Shared Neighborhood Hits	243
SwissProt Accessions	P10284, Q3UZB4, Q4VBG0	Gene names	Hoxb4, Hox-2.6, Hoxb-4
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2.6).

HXD11_HUMAN
θ value	0.813845 (rank : 175)	NC score	0.263769 (rank : 171)
Query Neighborhood Hits	297	Target Neighborhood Hits	353	Shared Neighborhood Hits	237
SwissProt Accessions	P31277, Q9NS02	Gene names	HOXD11, HOX4F
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4F).

HXD8_HUMAN
θ value	0.813845 (rank : 176)	NC score	0.225717 (rank : 249)
Query Neighborhood Hits	297	Target Neighborhood Hits	338	Shared Neighborhood Hits	241
SwissProt Accessions	P13378	Gene names	HOXD8, HOX4E
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4).

HXD8_MOUSE
θ value	0.813845 (rank : 177)	NC score	0.223042 (rank : 254)
Query Neighborhood Hits	297	Target Neighborhood Hits	333	Shared Neighborhood Hits	239
SwissProt Accessions	P23463	Gene names	Hoxd8, Hox-4.3, Hoxd-8
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4).

MEOX1_HUMAN
θ value	0.813845 (rank : 178)	NC score	0.303069 (rank : 85)
Query Neighborhood Hits	297	Target Neighborhood Hits	342	Shared Neighborhood Hits	244
SwissProt Accessions	P50221	Gene names	MEOX1, MOX1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

MEOX1_MOUSE
θ value	0.813845 (rank : 179)	NC score	0.298805 (rank : 94)
Query Neighborhood Hits	297	Target Neighborhood Hits	345	Shared Neighborhood Hits	244
SwissProt Accessions	P32442	Gene names	Meox1, Mox-1, Mox1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

NKX24_MOUSE
θ value	0.813845 (rank : 180)	NC score	0.276332 (rank : 149)
Query Neighborhood Hits	297	Target Neighborhood Hits	356	Shared Neighborhood Hits	247
SwissProt Accessions	Q9EQM3, Q9EQM4	Gene names	Nkx2-4, Nkx2d
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

OTX2_HUMAN
θ value	0.813845 (rank : 181)	NC score	0.278802 (rank : 144)
Query Neighborhood Hits	297	Target Neighborhood Hits	341	Shared Neighborhood Hits	244
SwissProt Accessions	P32243, Q6GTV3, Q9HAW3, Q9P2R1	Gene names	OTX2
Domain Architecture
Description	Homeobox protein OTX2.

OTX2_MOUSE
θ value	0.813845 (rank : 182)	NC score	0.278971 (rank : 143)
Query Neighborhood Hits	297	Target Neighborhood Hits	345	Shared Neighborhood Hits	244
SwissProt Accessions	P80206	Gene names	Otx2, Otx-2
Domain Architecture
Description	Homeobox protein OTX2.

SHAN1_HUMAN
θ value	0.813845 (rank : 183)	NC score	0.003027 (rank : 385)
Query Neighborhood Hits	297	Target Neighborhood Hits	1041	Shared Neighborhood Hits	22
SwissProt Accessions	Q9Y566, Q9NYW9	Gene names	SHANK1
Domain Architecture
Description	SH3 and multiple ankyrin repeat domains protein 1 (Shank1) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP).

ATX2_MOUSE
θ value	1.06291 (rank : 184)	NC score	0.024661 (rank : 351)
Query Neighborhood Hits	297	Target Neighborhood Hits	445	Shared Neighborhood Hits	25
SwissProt Accessions	O70305, P97421	Gene names	Atxn2, Atx2, Sca2
Domain Architecture	No domain graphic available
Description	Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog).

CART1_MOUSE
θ value	1.06291 (rank : 185)	NC score	0.264962 (rank : 169)
Query Neighborhood Hits	297	Target Neighborhood Hits	344	Shared Neighborhood Hits	242
SwissProt Accessions	Q8C8B0, Q8C370	Gene names	Cart1
Domain Architecture	No domain graphic available
Description	Cartilage homeoprotein 1 (CART-1).

FOXJ2_HUMAN
θ value	1.06291 (rank : 186)	NC score	0.006056 (rank : 378)
Query Neighborhood Hits	297	Target Neighborhood Hits	239	Shared Neighborhood Hits	14
SwissProt Accessions	Q9P0K8, Q96PS9, Q9NSN5	Gene names	FOXJ2, FHX
Domain Architecture
Description	Forkhead box protein J2 (Fork head homologous X).

HLXB9_HUMAN
θ value	1.06291 (rank : 187)	NC score	0.272585 (rank : 162)
Query Neighborhood Hits	297	Target Neighborhood Hits	336	Shared Neighborhood Hits	241
SwissProt Accessions	P50219, Q9Y648	Gene names	HLXB9
Domain Architecture
Description	Homeobox protein HB9.

HXB1_HUMAN
θ value	1.06291 (rank : 188)	NC score	0.261241 (rank : 174)
Query Neighborhood Hits	297	Target Neighborhood Hits	356	Shared Neighborhood Hits	239
SwissProt Accessions	P14653	Gene names	HOXB1, HOX2I
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2I).

MEOX2_HUMAN
θ value	1.06291 (rank : 189)	NC score	0.288520 (rank : 123)
Query Neighborhood Hits	297	Target Neighborhood Hits	340	Shared Neighborhood Hits	242
SwissProt Accessions	P50222, O75263, Q9UPL6	Gene names	MEOX2, GAX, MOX2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth arrest-specific homeobox).

MEOX2_MOUSE
θ value	1.06291 (rank : 190)	NC score	0.287925 (rank : 124)
Query Neighborhood Hits	297	Target Neighborhood Hits	341	Shared Neighborhood Hits	242
SwissProt Accessions	P32443, Q544T6	Gene names	Meox2, Gax, Mox-2, Mox2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2).

OTP_MOUSE
θ value	1.06291 (rank : 191)	NC score	0.283857 (rank : 130)
Query Neighborhood Hits	297	Target Neighborhood Hits	387	Shared Neighborhood Hits	245
SwissProt Accessions	O09113	Gene names	Otp
Domain Architecture
Description	Homeobox protein orthopedia.

SIX1_HUMAN
θ value	1.06291 (rank : 192)	NC score	0.130881 (rank : 302)
Query Neighborhood Hits	297	Target Neighborhood Hits	343	Shared Neighborhood Hits	221
SwissProt Accessions	Q15475, Q96H64	Gene names	SIX1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

SIX1_MOUSE
θ value	1.06291 (rank : 193)	NC score	0.130985 (rank : 301)
Query Neighborhood Hits	297	Target Neighborhood Hits	341	Shared Neighborhood Hits	221
SwissProt Accessions	Q62231, Q8CIL7	Gene names	Six1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

TULP4_HUMAN
θ value	1.06291 (rank : 194)	NC score	0.021820 (rank : 357)
Query Neighborhood Hits	297	Target Neighborhood Hits	426	Shared Neighborhood Hits	20
SwissProt Accessions	Q9NRJ4, Q9HD22, Q9P2F0	Gene names	TULP4, KIAA1397, TUSP
Domain Architecture
Description	Tubby-like protein 4 (Tubby superfamily protein).

VSX1_MOUSE
θ value	1.06291 (rank : 195)	NC score	0.276312 (rank : 150)
Query Neighborhood Hits	297	Target Neighborhood Hits	356	Shared Neighborhood Hits	241
SwissProt Accessions	Q91V10	Gene names	Vsx1, Rinx
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

ARI1B_HUMAN
θ value	1.38821 (rank : 196)	NC score	0.021860 (rank : 356)
Query Neighborhood Hits	297	Target Neighborhood Hits	567	Shared Neighborhood Hits	29
SwissProt Accessions	Q8NFD5, Q5JRD1, Q5VYC4, Q8IZY8, Q8TEV0, Q8TF02, Q99491, Q9ULI5	Gene names	ARID1B, DAN15, KIAA1235, OSA2
Domain Architecture	No domain graphic available
Description	AT-rich interactive domain-containing protein 1B (ARID domain- containing protein 1B) (Osa homolog 2) (hOsa2) (p250R) (BRG1-binding protein hELD/OSA1) (BRG1-associated factor 250b) (BAF250B).

CDX4_MOUSE
θ value	1.38821 (rank : 197)	NC score	0.251099 (rank : 197)
Query Neighborhood Hits	297	Target Neighborhood Hits	378	Shared Neighborhood Hits	244
SwissProt Accessions	Q07424	Gene names	Cdx4, Cdx-4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

HXA11_MOUSE
θ value	1.38821 (rank : 198)	NC score	0.256871 (rank : 185)
Query Neighborhood Hits	297	Target Neighborhood Hits	327	Shared Neighborhood Hits	236
SwissProt Accessions	P31311, Q3V026	Gene names	Hoxa11, Hox-1.9, Hoxa-11
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1.9).

K0460_MOUSE
θ value	1.38821 (rank : 199)	NC score	0.021133 (rank : 358)
Query Neighborhood Hits	297	Target Neighborhood Hits	374	Shared Neighborhood Hits	16
SwissProt Accessions	Q6NXI6, Q3U3L8, Q6ZQA7	Gene names	Kiaa0460
Domain Architecture	No domain graphic available
Description	Protein KIAA0460.

NCOR2_HUMAN
θ value	1.38821 (rank : 200)	NC score	0.011942 (rank : 366)
Query Neighborhood Hits	297	Target Neighborhood Hits	870	Shared Neighborhood Hits	27
SwissProt Accessions	Q9Y618, O00613, O15416, Q13354, Q9Y5U0	Gene names	NCOR2, CTG26
Domain Architecture
Description	Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor- associating factor) (TRAC) (CTG repeat protein 26) (SMAP270).

RX_MOUSE
θ value	1.38821 (rank : 201)	NC score	0.276274 (rank : 151)
Query Neighborhood Hits	297	Target Neighborhood Hits	429	Shared Neighborhood Hits	246
SwissProt Accessions	O35602, O08748	Gene names	Rax, Rx
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

VSX1_HUMAN
θ value	1.38821 (rank : 202)	NC score	0.280003 (rank : 139)
Query Neighborhood Hits	297	Target Neighborhood Hits	344	Shared Neighborhood Hits	240
SwissProt Accessions	Q9NZR4, Q5TF40, Q5TF41, Q9HCU3, Q9NU27	Gene names	VSX1, RINX
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

BARX1_HUMAN
θ value	1.81305 (rank : 203)	NC score	0.270177 (rank : 165)
Query Neighborhood Hits	297	Target Neighborhood Hits	326	Shared Neighborhood Hits	239
SwissProt Accessions	Q9HBU1	Gene names	BARX1
Domain Architecture
Description	Homeobox protein BarH-like 1.

BARX1_MOUSE
θ value	1.81305 (rank : 204)	NC score	0.270578 (rank : 164)
Query Neighborhood Hits	297	Target Neighborhood Hits	324	Shared Neighborhood Hits	239
SwissProt Accessions	Q9ER42, O09066, P70159, Q9ERV2	Gene names	Barx1
Domain Architecture
Description	Homeobox protein BarH-like 1.

CBP_HUMAN
θ value	1.81305 (rank : 205)	NC score	0.024232 (rank : 353)
Query Neighborhood Hits	297	Target Neighborhood Hits	941	Shared Neighborhood Hits	35
SwissProt Accessions	Q92793, O00147, Q16376	Gene names	CREBBP, CBP
Domain Architecture
Description	CREB-binding protein (EC 2.3.1.48).

CBP_MOUSE
θ value	1.81305 (rank : 206)	NC score	0.023018 (rank : 355)
Query Neighborhood Hits	297	Target Neighborhood Hits	1051	Shared Neighborhood Hits	40
SwissProt Accessions	P45481	Gene names	Crebbp, Cbp
Domain Architecture
Description	CREB-binding protein (EC 2.3.1.48).

HXC4_MOUSE
θ value	1.81305 (rank : 207)	NC score	0.253559 (rank : 191)
Query Neighborhood Hits	297	Target Neighborhood Hits	365	Shared Neighborhood Hits	240
SwissProt Accessions	Q08624	Gene names	Hoxc4, Hox-3.5, Hoxc-4
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3.5).

HXD11_MOUSE
θ value	1.81305 (rank : 208)	NC score	0.257744 (rank : 181)
Query Neighborhood Hits	297	Target Neighborhood Hits	376	Shared Neighborhood Hits	237
SwissProt Accessions	P23813	Gene names	Hoxd11, Hox-4.6, Hoxd-11
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5).

SYN3_HUMAN
θ value	1.81305 (rank : 209)	NC score	0.015348 (rank : 361)
Query Neighborhood Hits	297	Target Neighborhood Hits	203	Shared Neighborhood Hits	9
SwissProt Accessions	O14994	Gene names	SYN3
Domain Architecture
Description	Synapsin-3 (Synapsin III).

HCN4_MOUSE
θ value	2.36792 (rank : 210)	NC score	0.002995 (rank : 386)
Query Neighborhood Hits	297	Target Neighborhood Hits	284	Shared Neighborhood Hits	8
SwissProt Accessions	O70507	Gene names	Hcn4, Bcng3
Domain Architecture
Description	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 (Brain cyclic nucleotide-gated channel 3) (BCNG-3).

HXA3_HUMAN
θ value	2.36792 (rank : 211)	NC score	0.226993 (rank : 247)
Query Neighborhood Hits	297	Target Neighborhood Hits	535	Shared Neighborhood Hits	245
SwissProt Accessions	O43365	Gene names	HOXA3, HOX1E
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1E).

LMO6_MOUSE
θ value	2.36792 (rank : 212)	NC score	0.035948 (rank : 349)
Query Neighborhood Hits	297	Target Neighborhood Hits	277	Shared Neighborhood Hits	27
SwissProt Accessions	Q80VL3, Q8CAY9	Gene names	Lmo6
Domain Architecture	No domain graphic available
Description	LIM domain only protein 6 (Triple LIM domain protein 6).

PAX6_HUMAN
θ value	2.36792 (rank : 213)	NC score	0.245744 (rank : 211)
Query Neighborhood Hits	297	Target Neighborhood Hits	383	Shared Neighborhood Hits	245
SwissProt Accessions	P26367, Q6N006, Q99413	Gene names	PAX6, AN2
Domain Architecture
Description	Paired box protein Pax-6 (Oculorhombin) (Aniridia type II protein).

PAX6_MOUSE
θ value	2.36792 (rank : 214)	NC score	0.245744 (rank : 212)
Query Neighborhood Hits	297	Target Neighborhood Hits	383	Shared Neighborhood Hits	245
SwissProt Accessions	P63015, P32117, P70601, Q62222, Q64037, Q8CEI5, Q8VDB5, Q921Q8	Gene names	Pax6, Pax-6, Sey
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-6 (Oculorhombin).

RNF13_MOUSE
θ value	2.36792 (rank : 215)	NC score	0.011636 (rank : 367)
Query Neighborhood Hits	297	Target Neighborhood Hits	164	Shared Neighborhood Hits	3
SwissProt Accessions	O54965, O54966	Gene names	Rnf13, Rzf
Domain Architecture
Description	RING finger protein 13.

SIX2_HUMAN
θ value	2.36792 (rank : 216)	NC score	0.128952 (rank : 303)
Query Neighborhood Hits	297	Target Neighborhood Hits	345	Shared Neighborhood Hits	211
SwissProt Accessions	Q9NPC8, Q9BXH7	Gene names	SIX2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

SIX2_MOUSE
θ value	2.36792 (rank : 217)	NC score	0.132320 (rank : 300)
Query Neighborhood Hits	297	Target Neighborhood Hits	376	Shared Neighborhood Hits	228
SwissProt Accessions	Q62232, P70179	Gene names	Six2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

TITF1_HUMAN
θ value	2.36792 (rank : 218)	NC score	0.260838 (rank : 175)
Query Neighborhood Hits	297	Target Neighborhood Hits	332	Shared Neighborhood Hits	244
SwissProt Accessions	P43699, O14954, O14955, Q9BRJ8	Gene names	TITF1, NKX2-1, NKX2A, TTF1
Domain Architecture
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1) (Homeobox protein NK-2 homolog A).

TITF1_MOUSE
θ value	2.36792 (rank : 219)	NC score	0.262085 (rank : 172)
Query Neighborhood Hits	297	Target Neighborhood Hits	335	Shared Neighborhood Hits	245
SwissProt Accessions	P50220	Gene names	Titf1, Nkx-2.1, Nkx2-1, Ttf1
Domain Architecture	No domain graphic available
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1).

CDX2_HUMAN
θ value	3.0926 (rank : 220)	NC score	0.238276 (rank : 232)
Query Neighborhood Hits	297	Target Neighborhood Hits	330	Shared Neighborhood Hits	235
SwissProt Accessions	Q99626, O00503, Q969L8	Gene names	CDX2, CDX3
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2) (CDX-3).

DBX1_MOUSE
θ value	3.0926 (rank : 221)	NC score	0.296839 (rank : 101)
Query Neighborhood Hits	297	Target Neighborhood Hits	346	Shared Neighborhood Hits	246
SwissProt Accessions	P52950	Gene names	Dbx1, Dbx
Domain Architecture
Description	Homeobox protein DBX1.

GLIS3_MOUSE
θ value	3.0926 (rank : 222)	NC score	-0.004146 (rank : 391)
Query Neighborhood Hits	297	Target Neighborhood Hits	861	Shared Neighborhood Hits	10
SwissProt Accessions	Q6XP49, Q8BI60	Gene names	Glis3
Domain Architecture	No domain graphic available
Description	Zinc finger protein GLIS3 (GLI-similar 3).

HHEX_MOUSE
θ value	3.0926 (rank : 223)	NC score	0.241135 (rank : 224)
Query Neighborhood Hits	297	Target Neighborhood Hits	350	Shared Neighborhood Hits	236
SwissProt Accessions	P43120	Gene names	Hhex, Prhx
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

HME2_HUMAN
θ value	3.0926 (rank : 224)	NC score	0.284153 (rank : 129)
Query Neighborhood Hits	297	Target Neighborhood Hits	355	Shared Neighborhood Hits	241
SwissProt Accessions	P19622	Gene names	EN2
Domain Architecture
Description	Homeobox protein engrailed-2 (Hu-En-2).

HME2_MOUSE
θ value	3.0926 (rank : 225)	NC score	0.282394 (rank : 134)
Query Neighborhood Hits	297	Target Neighborhood Hits	352	Shared Neighborhood Hits	241
SwissProt Accessions	P09066	Gene names	En2, En-2
Domain Architecture
Description	Homeobox protein engrailed-2 (Mo-En-2).

HNRL1_HUMAN
θ value	3.0926 (rank : 226)	NC score	0.015967 (rank : 359)
Query Neighborhood Hits	297	Target Neighborhood Hits	173	Shared Neighborhood Hits	14
SwissProt Accessions	Q9BUJ2, O76022, Q6ZSZ0, Q7L8P4, Q8N6Z4, Q96G37, Q9HAL3, Q9UG75	Gene names	HNRPUL1, E1BAP5
Domain Architecture	No domain graphic available
Description	Heterogeneous nuclear ribonucleoprotein U-like protein 1 (Adenovirus early region 1B-associated protein 5) (E1B-55 kDa-associated protein 5) (E1B-AP5).

HXA11_HUMAN
θ value	3.0926 (rank : 227)	NC score	0.254039 (rank : 188)
Query Neighborhood Hits	297	Target Neighborhood Hits	334	Shared Neighborhood Hits	237
SwissProt Accessions	P31270	Gene names	HOXA11, HOX1I
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1I).

HXA3_MOUSE
θ value	3.0926 (rank : 228)	NC score	0.228350 (rank : 244)
Query Neighborhood Hits	297	Target Neighborhood Hits	558	Shared Neighborhood Hits	244
SwissProt Accessions	P02831, Q4V9Z8, Q61197	Gene names	Hoxa3, Hox-1.5, Hoxa-3
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1.5) (MO-10).

HXD1_MOUSE
θ value	3.0926 (rank : 229)	NC score	0.233185 (rank : 240)
Query Neighborhood Hits	297	Target Neighborhood Hits	381	Shared Neighborhood Hits	240
SwissProt Accessions	Q01822	Gene names	Hoxd1, Hox-4.9, Hoxd-1
Domain Architecture
Description	Homeobox protein Hox-D1 (Hox-4.9).

PEPP1_HUMAN
θ value	3.0926 (rank : 230)	NC score	0.297309 (rank : 98)
Query Neighborhood Hits	297	Target Neighborhood Hits	338	Shared Neighborhood Hits	245
SwissProt Accessions	Q8NHV9, O95030, Q3SYE0	Gene names	PEPP1, OTEX
Domain Architecture
Description	Paired-like homeobox protein PEPP-1 (Ovary-, testis- and epididymis- expressed gene protein).

ROBO3_HUMAN
θ value	3.0926 (rank : 231)	NC score	-0.002924 (rank : 390)
Query Neighborhood Hits	297	Target Neighborhood Hits	570	Shared Neighborhood Hits	3
SwissProt Accessions	Q96MS0	Gene names	ROBO3
Domain Architecture
Description	Roundabout homolog 3 precursor (Roundabout-like protein 3).

SHOX2_HUMAN
θ value	3.0926 (rank : 232)	NC score	0.276421 (rank : 148)
Query Neighborhood Hits	297	Target Neighborhood Hits	353	Shared Neighborhood Hits	247
SwissProt Accessions	O60902, O60465, O60467, O60903	Gene names	SHOX2, OG12X, SHOT
Domain Architecture
Description	Short stature homeobox protein 2 (Paired-related homeobox protein SHOT) (Homeobox protein Og12X).

SHOX2_MOUSE
θ value	3.0926 (rank : 233)	NC score	0.274124 (rank : 158)
Query Neighborhood Hits	297	Target Neighborhood Hits	348	Shared Neighborhood Hits	247
SwissProt Accessions	P70390, P70369	Gene names	Shox2, Og12x, Prx3
Domain Architecture
Description	Short stature homeobox protein 2 (Homeobox protein Og12X) (OG-12) (Paired family homeodomain protein Prx3).

SHOX_HUMAN
θ value	3.0926 (rank : 234)	NC score	0.273028 (rank : 160)
Query Neighborhood Hits	297	Target Neighborhood Hits	363	Shared Neighborhood Hits	248
SwissProt Accessions	O15266, O00412, O00413, O15267	Gene names	SHOX, PHOG
Domain Architecture
Description	Short stature homeobox protein (Short stature homeobox-containing protein) (Pseudoautosomal homeobox-containing osteogenic protein).

SMAD1_HUMAN
θ value	3.0926 (rank : 235)	NC score	0.006552 (rank : 375)
Query Neighborhood Hits	297	Target Neighborhood Hits	59	Shared Neighborhood Hits	3
SwissProt Accessions	Q15797, Q16636	Gene names	SMAD1, BSP1, MADH1, MADR1
Domain Architecture
Description	Mothers against decapentaplegic homolog 1 (SMAD 1) (Mothers against DPP homolog 1) (Mad-related protein 1) (Transforming growth factor- beta signaling protein 1) (BSP-1) (hSMAD1) (JV4-1).

SMAD1_MOUSE
θ value	3.0926 (rank : 236)	NC score	0.006666 (rank : 374)
Query Neighborhood Hits	297	Target Neighborhood Hits	56	Shared Neighborhood Hits	4
SwissProt Accessions	P70340, P70442, Q9CYK6	Gene names	Smad1, Madh1, Madr1
Domain Architecture
Description	Mothers against decapentaplegic homolog 1 (SMAD 1) (Mothers against DPP homolog 1) (Mad-related protein 1) (Mothers-against-DPP-related 1) (mMad1) (Dwarfin-A) (Dwf-A).

SOX1_MOUSE
θ value	3.0926 (rank : 237)	NC score	0.005322 (rank : 380)
Query Neighborhood Hits	297	Target Neighborhood Hits	90	Shared Neighborhood Hits	4
SwissProt Accessions	P53783	Gene names	Sox1, Sox-1
Domain Architecture
Description	SOX-1 protein.

DUX1_HUMAN
θ value	4.03905 (rank : 238)	NC score	0.247487 (rank : 207)
Query Neighborhood Hits	297	Target Neighborhood Hits	330	Shared Neighborhood Hits	243
SwissProt Accessions	O43812	Gene names	DUX1
Domain Architecture	No domain graphic available
Description	Double homeobox protein 1.

DUX5_HUMAN
θ value	4.03905 (rank : 239)	NC score	0.245723 (rank : 213)
Query Neighborhood Hits	297	Target Neighborhood Hits	330	Shared Neighborhood Hits	243
SwissProt Accessions	Q96PT3	Gene names	DUX5
Domain Architecture	No domain graphic available
Description	Double homeobox protein 5.

FBX42_MOUSE
θ value	4.03905 (rank : 240)	NC score	0.010235 (rank : 368)
Query Neighborhood Hits	297	Target Neighborhood Hits	84	Shared Neighborhood Hits	3
SwissProt Accessions	Q6PDJ6, Q8CE76, Q99KY2	Gene names	Fbxo42
Domain Architecture	No domain graphic available
Description	F-box only protein 42.

HNRL1_MOUSE
θ value	4.03905 (rank : 241)	NC score	0.014402 (rank : 364)
Query Neighborhood Hits	297	Target Neighborhood Hits	200	Shared Neighborhood Hits	15
SwissProt Accessions	Q8VDM6, Q3U201, Q3UPB0, Q6AZA7, Q8BY45, Q8K365	Gene names	Hnrpul1
Domain Architecture	No domain graphic available
Description	Heterogeneous nuclear ribonucleoprotein U-like protein 1.

IF4G1_HUMAN
θ value	4.03905 (rank : 242)	NC score	0.004805 (rank : 381)
Query Neighborhood Hits	297	Target Neighborhood Hits	347	Shared Neighborhood Hits	13
SwissProt Accessions	Q04637, O43177, O95066, Q5HYG0, Q6ZN21, Q8N102	Gene names	EIF4G1, EIF4G, EIF4GI
Domain Architecture
Description	Eukaryotic translation initiation factor 4 gamma 1 (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220).

IRX2_HUMAN
θ value	4.03905 (rank : 243)	NC score	0.053634 (rank : 347)
Query Neighborhood Hits	297	Target Neighborhood Hits	358	Shared Neighborhood Hits	138
SwissProt Accessions	Q9BZI1, Q7Z2I7	Gene names	IRX2, IRXA2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

NIPBL_HUMAN
θ value	4.03905 (rank : 244)	NC score	0.003567 (rank : 384)
Query Neighborhood Hits	297	Target Neighborhood Hits	1311	Shared Neighborhood Hits	18
SwissProt Accessions	Q6KC79, Q6KCD6, Q6N080, Q6ZT92, Q7Z2E6, Q8N4M5, Q9Y6Y3, Q9Y6Y4	Gene names	NIPBL, IDN3
Domain Architecture	No domain graphic available
Description	Nipped-B-like protein (Delangin) (SCC2 homolog).

NKX61_HUMAN
θ value	4.03905 (rank : 245)	NC score	0.253876 (rank : 189)
Query Neighborhood Hits	297	Target Neighborhood Hits	431	Shared Neighborhood Hits	238
SwissProt Accessions	P78426	Gene names	NKX6-1, NKX6A
Domain Architecture
Description	Homeobox protein Nkx-6.1.

NKX61_MOUSE
θ value	4.03905 (rank : 246)	NC score	0.253574 (rank : 190)
Query Neighborhood Hits	297	Target Neighborhood Hits	439	Shared Neighborhood Hits	237
SwissProt Accessions	Q99MA9, Q9ERQ7	Gene names	Nkx6-1, Nkx6.1, Nkx6a
Domain Architecture
Description	Homeobox protein Nkx-6.1.

NPBL_MOUSE
θ value	4.03905 (rank : 247)	NC score	0.006760 (rank : 373)
Query Neighborhood Hits	297	Target Neighborhood Hits	1041	Shared Neighborhood Hits	21
SwissProt Accessions	Q6KCD5, Q6KC78, Q7TNS4, Q8BKV4, Q8CES9, Q9CUC6	Gene names	Nipbl
Domain Architecture	No domain graphic available
Description	Nipped-B-like protein (Delangin homolog) (SCC2 homolog).

PROP1_MOUSE
θ value	4.03905 (rank : 248)	NC score	0.306674 (rank : 77)
Query Neighborhood Hits	297	Target Neighborhood Hits	361	Shared Neighborhood Hits	246
SwissProt Accessions	P97458	Gene names	Prop1, Prop-1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

ZCH11_HUMAN
θ value	4.03905 (rank : 249)	NC score	0.009986 (rank : 370)
Query Neighborhood Hits	297	Target Neighborhood Hits	278	Shared Neighborhood Hits	7
SwissProt Accessions	Q5TAX3, Q12764, Q5TAX4, Q86XZ3	Gene names	ZCCHC11, KIAA0191
Domain Architecture	No domain graphic available
Description	Zinc finger CCHC domain-containing protein 11.

ATX2_HUMAN
θ value	5.27518 (rank : 250)	NC score	0.015218 (rank : 362)
Query Neighborhood Hits	297	Target Neighborhood Hits	375	Shared Neighborhood Hits	15
SwissProt Accessions	Q99700, Q6ZQZ7, Q99493	Gene names	ATXN2, ATX2, SCA2, TNRC13
Domain Architecture	No domain graphic available
Description	Ataxin-2 (Spinocerebellar ataxia type 2 protein) (Trinucleotide repeat-containing gene 13 protein).

CHX10_HUMAN
θ value	5.27518 (rank : 251)	NC score	0.253398 (rank : 193)
Query Neighborhood Hits	297	Target Neighborhood Hits	340	Shared Neighborhood Hits	239
SwissProt Accessions	P58304	Gene names	CHX10, VSX2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

CHX10_MOUSE
θ value	5.27518 (rank : 252)	NC score	0.253506 (rank : 192)
Query Neighborhood Hits	297	Target Neighborhood Hits	340	Shared Neighborhood Hits	239
SwissProt Accessions	Q61412	Gene names	Chx10, Vsx2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

HHEX_HUMAN
θ value	5.27518 (rank : 253)	NC score	0.241244 (rank : 223)
Query Neighborhood Hits	297	Target Neighborhood Hits	358	Shared Neighborhood Hits	236
SwissProt Accessions	Q03014	Gene names	HHEX, HEX, PRH, PRHX
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

HXD9_HUMAN
θ value	5.27518 (rank : 254)	NC score	0.213819 (rank : 269)
Query Neighborhood Hits	297	Target Neighborhood Hits	352	Shared Neighborhood Hits	235
SwissProt Accessions	P28356	Gene names	HOXD9, HOX4C
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2).

HXD9_MOUSE
θ value	5.27518 (rank : 255)	NC score	0.209294 (rank : 274)
Query Neighborhood Hits	297	Target Neighborhood Hits	359	Shared Neighborhood Hits	235
SwissProt Accessions	P28357, Q3UYS2	Gene names	Hoxd9, Hox-4.4, Hoxd-9
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4.4) (Hox-5.2).

K0240_HUMAN
θ value	5.27518 (rank : 256)	NC score	0.014880 (rank : 363)
Query Neighborhood Hits	297	Target Neighborhood Hits	96	Shared Neighborhood Hits	9
SwissProt Accessions	Q6AI39, Q5TFZ3, Q92514	Gene names	KIAA0240
Domain Architecture	No domain graphic available
Description	Protein KIAA0240.

PAX3_HUMAN
θ value	5.27518 (rank : 257)	NC score	0.243860 (rank : 218)
Query Neighborhood Hits	297	Target Neighborhood Hits	513	Shared Neighborhood Hits	252
SwissProt Accessions	P23760, Q16448	Gene names	PAX3, HUP2
Domain Architecture
Description	Paired box protein Pax-3 (HUP2).

PAX3_MOUSE
θ value	5.27518 (rank : 258)	NC score	0.243752 (rank : 219)
Query Neighborhood Hits	297	Target Neighborhood Hits	478	Shared Neighborhood Hits	247
SwissProt Accessions	P24610, Q3UFQ9, Q8BRE7, Q9CXI6	Gene names	Pax3, Pax-3
Domain Architecture
Description	Paired box protein Pax-3.

PAX7_HUMAN
θ value	5.27518 (rank : 259)	NC score	0.241890 (rank : 221)
Query Neighborhood Hits	297	Target Neighborhood Hits	456	Shared Neighborhood Hits	252
SwissProt Accessions	P23759	Gene names	PAX7, HUP1
Domain Architecture
Description	Paired box protein Pax-7 (HUP1).

PAX7_MOUSE
θ value	5.27518 (rank : 260)	NC score	0.241641 (rank : 222)
Query Neighborhood Hits	297	Target Neighborhood Hits	422	Shared Neighborhood Hits	250
SwissProt Accessions	P47239, Q9ES16	Gene names	Pax7, Pax-7
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-7.

PROP1_HUMAN
θ value	5.27518 (rank : 261)	NC score	0.290940 (rank : 111)
Query Neighborhood Hits	297	Target Neighborhood Hits	354	Shared Neighborhood Hits	245
SwissProt Accessions	O75360	Gene names	PROP1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

ZHX3_MOUSE
θ value	5.27518 (rank : 262)	NC score	0.108641 (rank : 310)
Query Neighborhood Hits	297	Target Neighborhood Hits	321	Shared Neighborhood Hits	166
SwissProt Accessions	Q8C0Q2, Q80U14	Gene names	Zhx3, Kiaa0395, Tix1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

ANR40_MOUSE
θ value	6.88961 (rank : 263)	NC score	0.002169 (rank : 387)
Query Neighborhood Hits	297	Target Neighborhood Hits	228	Shared Neighborhood Hits	4
SwissProt Accessions	Q5SUE8, Q8R595, Q9CU71	Gene names	Ankrd40
Domain Architecture	No domain graphic available
Description	Ankyrin repeat domain-containing protein 40.

CHD8_HUMAN
θ value	6.88961 (rank : 264)	NC score	0.001533 (rank : 389)
Query Neighborhood Hits	297	Target Neighborhood Hits	235	Shared Neighborhood Hits	6
SwissProt Accessions	Q9HCK8, Q68DQ0, Q8N3Z9, Q8NCY4, Q8TBR9, Q96F26	Gene names	CHD8, HELSNF1, KIAA1564
Domain Architecture	No domain graphic available
Description	Chromodomain-helicase-DNA-binding protein 8 (EC 3.6.1.-) (ATP- dependent helicase CHD8) (CHD-8) (Helicase with SNF2 domain 1).

DLX4_HUMAN
θ value	6.88961 (rank : 265)	NC score	0.260570 (rank : 177)
Query Neighborhood Hits	297	Target Neighborhood Hits	350	Shared Neighborhood Hits	240
SwissProt Accessions	Q92988, O60480, Q13265, Q6PJK0, Q9HBE0	Gene names	DLX4, BP1, DLX7, DLX8
Domain Architecture	No domain graphic available
Description	Homeobox protein DLX-4 (DLX-7) (DLX-8) (Beta protein 1).

FREM1_MOUSE
θ value	6.88961 (rank : 266)	NC score	0.004142 (rank : 383)
Query Neighborhood Hits	297	Target Neighborhood Hits	163	Shared Neighborhood Hits	4
SwissProt Accessions	Q684R7, Q5H8C2, Q5M7B3, Q8C732	Gene names	Frem1
Domain Architecture	No domain graphic available
Description	FRAS1-related extracellular matrix protein 1 precursor (Protein QBRICK).

GLIS3_HUMAN
θ value	6.88961 (rank : 267)	NC score	-0.005731 (rank : 393)
Query Neighborhood Hits	297	Target Neighborhood Hits	758	Shared Neighborhood Hits	7
SwissProt Accessions	Q8NEA6	Gene names	GLIS3, ZNF515
Domain Architecture	No domain graphic available
Description	Zinc finger protein GLIS3 (GLI-similar 3) (Zinc finger protein 515).

HME1_HUMAN
θ value	6.88961 (rank : 268)	NC score	0.275771 (rank : 154)
Query Neighborhood Hits	297	Target Neighborhood Hits	384	Shared Neighborhood Hits	236
SwissProt Accessions	Q05925	Gene names	EN1
Domain Architecture
Description	Homeobox protein engrailed-1 (Hu-En-1).

HME1_MOUSE
θ value	6.88961 (rank : 269)	NC score	0.275881 (rank : 152)
Query Neighborhood Hits	297	Target Neighborhood Hits	397	Shared Neighborhood Hits	236
SwissProt Accessions	P09065	Gene names	En1, En-1
Domain Architecture
Description	Homeobox protein engrailed-1 (Mo-En-1).

HXC13_HUMAN
θ value	6.88961 (rank : 270)	NC score	0.232229 (rank : 241)
Query Neighborhood Hits	297	Target Neighborhood Hits	336	Shared Neighborhood Hits	237
SwissProt Accessions	P31276, Q96J32, Q9NR24, Q9NYD5	Gene names	HOXC13, HOX3G
Domain Architecture
Description	Homeobox protein Hox-C13 (Hox-3G).

HXC13_MOUSE
θ value	6.88961 (rank : 271)	NC score	0.232177 (rank : 242)
Query Neighborhood Hits	297	Target Neighborhood Hits	337	Shared Neighborhood Hits	237
SwissProt Accessions	P50207, Q53Z78, Q920I7	Gene names	Hoxc13, Hoxc-13
Domain Architecture
Description	Homeobox protein Hox-C13.

HXC4_HUMAN
θ value	6.88961 (rank : 272)	NC score	0.237604 (rank : 234)
Query Neighborhood Hits	297	Target Neighborhood Hits	361	Shared Neighborhood Hits	238
SwissProt Accessions	P09017	Gene names	HOXC4, HOX3E
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3E) (CP19).

K0240_MOUSE
θ value	6.88961 (rank : 273)	NC score	0.010011 (rank : 369)
Query Neighborhood Hits	297	Target Neighborhood Hits	211	Shared Neighborhood Hits	8
SwissProt Accessions	Q8CHH5	Gene names	Kiaa0240
Domain Architecture	No domain graphic available
Description	Protein KIAA0240.

MAFB_MOUSE
θ value	6.88961 (rank : 274)	NC score	0.008304 (rank : 371)
Query Neighborhood Hits	297	Target Neighborhood Hits	92	Shared Neighborhood Hits	4
SwissProt Accessions	P54841	Gene names	Mafb, Krml, Maf1
Domain Architecture
Description	Transcription factor MafB (V-maf musculoaponeurotic fibrosarcoma oncogene homolog B) (Transcription factor MAF1) (Segmentation protein KR) (Kreisler).

PROM1_MOUSE
θ value	6.88961 (rank : 275)	NC score	0.006161 (rank : 377)
Query Neighborhood Hits	297	Target Neighborhood Hits	77	Shared Neighborhood Hits	2
SwissProt Accessions	O54990, O35408	Gene names	Prom1, Prom, Proml1
Domain Architecture
Description	Prominin-1 precursor (Prominin-like protein 1) (Antigen AC133 homolog).

SLUG_MOUSE
θ value	6.88961 (rank : 276)	NC score	-0.006081 (rank : 394)
Query Neighborhood Hits	297	Target Neighborhood Hits	712	Shared Neighborhood Hits	9
SwissProt Accessions	P97469, O09096, Q9R211	Gene names	Snai2, Slug, Slugh
Domain Architecture	No domain graphic available
Description	Zinc finger protein SLUG (Neural crest transcription factor Slug) (Snail homolog 2).

TCF8_MOUSE
θ value	6.88961 (rank : 277)	NC score	0.015443 (rank : 360)
Query Neighborhood Hits	297	Target Neighborhood Hits	1067	Shared Neighborhood Hits	49
SwissProt Accessions	Q64318, Q62519	Gene names	Tcf8, Zfhx1a, Zfx1a, Zfx1ha
Domain Architecture
Description	Transcription factor 8 (Zinc finger homeobox protein 1a) (MEB1) (Delta EF1).

ZHX2_HUMAN
θ value	6.88961 (rank : 278)	NC score	0.088902 (rank : 323)
Query Neighborhood Hits	297	Target Neighborhood Hits	347	Shared Neighborhood Hits	144
SwissProt Accessions	Q9Y6X8	Gene names	ZHX2, AFR1, KIAA0854, RAF
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

HNF6_HUMAN
θ value	8.99809 (rank : 279)	NC score	0.112839 (rank : 305)
Query Neighborhood Hits	297	Target Neighborhood Hits	127	Shared Neighborhood Hits	72
SwissProt Accessions	Q9UBC0, Q99744, Q9UMR6	Gene names	ONECUT1, HNF6, HNF6A
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

HXA10_MOUSE
θ value	8.99809 (rank : 280)	NC score	0.209068 (rank : 275)
Query Neighborhood Hits	297	Target Neighborhood Hits	365	Shared Neighborhood Hits	228
SwissProt Accessions	P31310, Q80Y22	Gene names	Hoxa10, Hox-1.8, Hoxa-10
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1.8).

HXB3_HUMAN
θ value	8.99809 (rank : 281)	NC score	0.217229 (rank : 262)
Query Neighborhood Hits	297	Target Neighborhood Hits	559	Shared Neighborhood Hits	248
SwissProt Accessions	P14651, O95615, P17484	Gene names	HOXB3, HOX2G
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7).

HXB3_MOUSE
θ value	8.99809 (rank : 282)	NC score	0.221393 (rank : 257)
Query Neighborhood Hits	297	Target Neighborhood Hits	493	Shared Neighborhood Hits	242
SwissProt Accessions	P09026, P10285, Q4PJ06, Q61680	Gene names	Hoxb3, Hox-2.7, Hoxb-3
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2.7) (Homeobox protein MH-23).

HXB9_HUMAN
θ value	8.99809 (rank : 283)	NC score	0.222738 (rank : 255)
Query Neighborhood Hits	297	Target Neighborhood Hits	344	Shared Neighborhood Hits	235
SwissProt Accessions	P17482, Q9H1I1	Gene names	HOXB9, HOX2E
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5).

HXB9_MOUSE
θ value	8.99809 (rank : 284)	NC score	0.221280 (rank : 258)
Query Neighborhood Hits	297	Target Neighborhood Hits	344	Shared Neighborhood Hits	233
SwissProt Accessions	P20615	Gene names	Hoxb9, Hox-2.5, Hoxb-9
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2.5).

HXC9_HUMAN
θ value	8.99809 (rank : 285)	NC score	0.212945 (rank : 272)
Query Neighborhood Hits	297	Target Neighborhood Hits	339	Shared Neighborhood Hits	233
SwissProt Accessions	P31274, Q9H1I0	Gene names	HOXC9, HOX3B
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3B).

HXC9_MOUSE
θ value	8.99809 (rank : 286)	NC score	0.213115 (rank : 271)
Query Neighborhood Hits	297	Target Neighborhood Hits	338	Shared Neighborhood Hits	233
SwissProt Accessions	P09633	Gene names	Hoxc9, Hox-3.2, Hoxc-9
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3.2).

LBX1_HUMAN
θ value	8.99809 (rank : 287)	NC score	0.289465 (rank : 116)
Query Neighborhood Hits	297	Target Neighborhood Hits	357	Shared Neighborhood Hits	244
SwissProt Accessions	P52954	Gene names	LBX1
Domain Architecture
Description	Transcription factor LBX1.

LBX1_MOUSE
θ value	8.99809 (rank : 288)	NC score	0.287632 (rank : 125)
Query Neighborhood Hits	297	Target Neighborhood Hits	349	Shared Neighborhood Hits	246
SwissProt Accessions	P52955	Gene names	Lbx1, Lbx1h
Domain Architecture
Description	Transcription factor LBX1.

MAF_MOUSE
θ value	8.99809 (rank : 289)	NC score	0.006829 (rank : 372)
Query Neighborhood Hits	297	Target Neighborhood Hits	95	Shared Neighborhood Hits	4
SwissProt Accessions	P54843	Gene names	Maf, Maf2
Domain Architecture
Description	Transcription factor Maf (Proto-oncogene c-maf).

MN1_HUMAN
θ value	8.99809 (rank : 290)	NC score	0.006034 (rank : 379)
Query Neighborhood Hits	297	Target Neighborhood Hits	196	Shared Neighborhood Hits	8
SwissProt Accessions	Q10571	Gene names	MN1
Domain Architecture	No domain graphic available
Description	Probable tumor suppressor protein MN1.

PITX1_HUMAN
θ value	8.99809 (rank : 291)	NC score	0.249845 (rank : 201)
Query Neighborhood Hits	297	Target Neighborhood Hits	353	Shared Neighborhood Hits	244
SwissProt Accessions	P78337, O14677, O60425, Q9BTI5	Gene names	PITX1, BFT, PTX1
Domain Architecture
Description	Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot).

PITX1_MOUSE
θ value	8.99809 (rank : 292)	NC score	0.253108 (rank : 194)
Query Neighborhood Hits	297	Target Neighborhood Hits	362	Shared Neighborhood Hits	246
SwissProt Accessions	P70314, O54742, P70427	Gene names	Pitx1, Bft, Potx, Ptx1
Domain Architecture
Description	Pituitary homeobox 1 (Homeobox protein P-OTX) (Pituitary OTX-related factor) (Hindlimb expressed homeobox protein backfoot) (Ptx1).

PITX2_HUMAN
θ value	8.99809 (rank : 293)	NC score	0.256886 (rank : 184)
Query Neighborhood Hits	297	Target Neighborhood Hits	381	Shared Neighborhood Hits	243
SwissProt Accessions	Q99697, O60578, O60579, O60580, Q9BY17	Gene names	PITX2, ARP1, RGS, RIEG, RIEG1
Domain Architecture
Description	Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription factor) (Solurshin) (ALL1-responsive protein ARP1).

PITX2_MOUSE
θ value	8.99809 (rank : 294)	NC score	0.257557 (rank : 182)
Query Neighborhood Hits	297	Target Neighborhood Hits	383	Shared Neighborhood Hits	243
SwissProt Accessions	P97474, O08646, O70336, P97933, Q9JLA0, Q9QXB8, Q9R1V9, Q9Z141	Gene names	Pitx2, Arp1, Brx1, Otlx2, Ptx2, Rgs
Domain Architecture
Description	Pituitary homeobox 2 (Orthodenticle-like homeobox 2) (Solurshin) (ALL1-responsive protein ARP1) (BRX1 homeoprotein) (Paired-like homeodomain transcription factor Munc 30).

PSD4_MOUSE
θ value	8.99809 (rank : 295)	NC score	0.004718 (rank : 382)
Query Neighborhood Hits	297	Target Neighborhood Hits	78	Shared Neighborhood Hits	5
SwissProt Accessions	Q8BLR5, Q3TE33, Q3TQF5, Q3UD59, Q3UFH9, Q80V44	Gene names	Psd4
Domain Architecture	No domain graphic available
Description	PH and SEC7 domain-containing protein 4 (Pleckstrin homology and SEC7 domain-containing protein 4).

SALL1_HUMAN
θ value	8.99809 (rank : 296)	NC score	-0.005377 (rank : 392)
Query Neighborhood Hits	297	Target Neighborhood Hits	821	Shared Neighborhood Hits	15
SwissProt Accessions	Q9NSC2, Q99881, Q9NSC3, Q9P1R0	Gene names	SALL1, SAL1
Domain Architecture
Description	Sal-like protein 1 (Zinc finger protein SALL1) (Spalt-like transcription factor 1) (HSal1).

SOX1_HUMAN
θ value	8.99809 (rank : 297)	NC score	0.002167 (rank : 388)
Query Neighborhood Hits	297	Target Neighborhood Hits	90	Shared Neighborhood Hits	3
SwissProt Accessions	O00570	Gene names	SOX1
Domain Architecture
Description	SOX-1 protein.

CUTL2_HUMAN
θ value	θ > 10 (rank : 298)	NC score	0.148209 (rank : 298)
Query Neighborhood Hits	297	Target Neighborhood Hits	906	Shared Neighborhood Hits	146
SwissProt Accessions	O14529	Gene names	CUTL2, KIAA0293
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

CUTL2_MOUSE
θ value	θ > 10 (rank : 299)	NC score	0.147085 (rank : 299)
Query Neighborhood Hits	297	Target Neighborhood Hits	771	Shared Neighborhood Hits	143
SwissProt Accessions	P70298	Gene names	Cutl2
Domain Architecture
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

DUX2_HUMAN
θ value	θ > 10 (rank : 300)	NC score	0.151693 (rank : 297)
Query Neighborhood Hits	297	Target Neighborhood Hits	173	Shared Neighborhood Hits	137
SwissProt Accessions	O75505	Gene names	DUX2
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 2.

DUX3_HUMAN
θ value	θ > 10 (rank : 301)	NC score	0.217243 (rank : 261)
Query Neighborhood Hits	297	Target Neighborhood Hits	312	Shared Neighborhood Hits	226
SwissProt Accessions	Q96PT4, Q9UND2	Gene names	DUX3
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 3.

GSH2_HUMAN
θ value	θ > 10 (rank : 302)	NC score	0.227805 (rank : 246)
Query Neighborhood Hits	297	Target Neighborhood Hits	324	Shared Neighborhood Hits	232
SwissProt Accessions	Q9BZM3	Gene names	GSH2
Domain Architecture
Description	Homeobox protein GSH-2.

GSH2_MOUSE
θ value	θ > 10 (rank : 303)	NC score	0.228203 (rank : 245)
Query Neighborhood Hits	297	Target Neighborhood Hits	319	Shared Neighborhood Hits	232
SwissProt Accessions	P31316	Gene names	Gsh2, Gsh-2
Domain Architecture
Description	Homeobox protein GSH-2.

GSHI_HUMAN
θ value	θ > 10 (rank : 304)	NC score	0.237095 (rank : 235)
Query Neighborhood Hits	297	Target Neighborhood Hits	314	Shared Neighborhood Hits	234
SwissProt Accessions	Q9H4S2	Gene names	GSH1
Domain Architecture
Description	Homeobox protein GSH-1.

GSHI_MOUSE
θ value	θ > 10 (rank : 305)	NC score	0.235505 (rank : 239)
Query Neighborhood Hits	297	Target Neighborhood Hits	313	Shared Neighborhood Hits	232
SwissProt Accessions	P31315	Gene names	Gsh1, Gsh-1
Domain Architecture
Description	Homeobox protein GSH-1.

HLX1_HUMAN
θ value	θ > 10 (rank : 306)	NC score	0.238739 (rank : 231)
Query Neighborhood Hits	297	Target Neighborhood Hits	370	Shared Neighborhood Hits	230
SwissProt Accessions	Q14774, Q15988	Gene names	HLX1
Domain Architecture
Description	Homeobox protein HLX1 (Homeobox protein HB24).

HLX1_MOUSE
θ value	θ > 10 (rank : 307)	NC score	0.240762 (rank : 226)
Query Neighborhood Hits	297	Target Neighborhood Hits	362	Shared Neighborhood Hits	234
SwissProt Accessions	Q61670	Gene names	Hlx1, Hlx
Domain Architecture
Description	Homeobox protein HLX1.

HNF6_MOUSE
θ value	θ > 10 (rank : 308)	NC score	0.112149 (rank : 306)
Query Neighborhood Hits	297	Target Neighborhood Hits	124	Shared Neighborhood Hits	74
SwissProt Accessions	O08755	Gene names	Onecut1, Hnf6, Hnf6a
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

HOP_HUMAN
θ value	θ > 10 (rank : 309)	NC score	0.077662 (rank : 333)
Query Neighborhood Hits	297	Target Neighborhood Hits	107	Shared Neighborhood Hits	80
SwissProt Accessions	Q9BPY8, Q8N0V6, Q96CI1	Gene names	HOP, HOD, LAGY, NECC1, OB1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Lung cancer-associated Y protein) (Odd homeobox protein 1) (Not expressed in choriocarcinoma protein 1).

HOP_MOUSE
θ value	θ > 10 (rank : 310)	NC score	0.066320 (rank : 345)
Query Neighborhood Hits	297	Target Neighborhood Hits	102	Shared Neighborhood Hits	73
SwissProt Accessions	Q8R1H0, Q8C1N5, Q8CJ22	Gene names	Hop, Hod, Ob1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Homeobox-only protein) (Odd homeobox protein 1) (mOB1).

HXA10_HUMAN
θ value	θ > 10 (rank : 311)	NC score	0.207622 (rank : 276)
Query Neighborhood Hits	297	Target Neighborhood Hits	334	Shared Neighborhood Hits	225
SwissProt Accessions	P31260, O43370, O43605, Q15949	Gene names	HOXA10, HOX1H
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL).

HXA13_HUMAN
θ value	θ > 10 (rank : 312)	NC score	0.216209 (rank : 266)
Query Neighborhood Hits	297	Target Neighborhood Hits	353	Shared Neighborhood Hits	231
SwissProt Accessions	P31271, O43371	Gene names	HOXA13, HOX1J
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1J).

HXA13_MOUSE
θ value	θ > 10 (rank : 313)	NC score	0.215895 (rank : 267)
Query Neighborhood Hits	297	Target Neighborhood Hits	351	Shared Neighborhood Hits	231
SwissProt Accessions	Q62424	Gene names	Hoxa13, Hox-1.10
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1.10).

HXA4_HUMAN
θ value	θ > 10 (rank : 314)	NC score	0.237730 (rank : 233)
Query Neighborhood Hits	297	Target Neighborhood Hits	370	Shared Neighborhood Hits	239
SwissProt Accessions	Q00056, O43366	Gene names	HOXA4, HOX1D
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4).

HXA4_MOUSE
θ value	θ > 10 (rank : 315)	NC score	0.232113 (rank : 243)
Query Neighborhood Hits	297	Target Neighborhood Hits	379	Shared Neighborhood Hits	233
SwissProt Accessions	P06798, Q61684, Q64388, Q8BPE6	Gene names	Hoxa4, Hox-1.4, Hoxa-4
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1.4) (Homeobox protein MH-3).

HXA5_HUMAN
θ value	θ > 10 (rank : 316)	NC score	0.203207 (rank : 282)
Query Neighborhood Hits	297	Target Neighborhood Hits	336	Shared Neighborhood Hits	230
SwissProt Accessions	P20719, O43367, Q96CY6	Gene names	HOXA5, HOX1C
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1C).

HXA5_MOUSE
θ value	θ > 10 (rank : 317)	NC score	0.204253 (rank : 281)
Query Neighborhood Hits	297	Target Neighborhood Hits	338	Shared Neighborhood Hits	230
SwissProt Accessions	P09021, Q91VQ5	Gene names	Hoxa5, Hox-1.3, Hoxa-5
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1.3) (M2).

HXA6_HUMAN
θ value	θ > 10 (rank : 318)	NC score	0.178904 (rank : 295)
Query Neighborhood Hits	297	Target Neighborhood Hits	309	Shared Neighborhood Hits	225
SwissProt Accessions	P31267, Q9UPM0	Gene names	HOXA6, HOX1B
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A6 (Hox-1B).

HXA6_MOUSE
θ value	θ > 10 (rank : 319)	NC score	0.175991 (rank : 296)
Query Neighborhood Hits	297	Target Neighborhood Hits	304	Shared Neighborhood Hits	223
SwissProt Accessions	P09092, Q9JI98	Gene names	Hoxa6, Hox-1.2, Hoxa-6
Domain Architecture
Description	Homeobox protein Hox-A6 (Hox-1.2) (M5-4).

HXA7_HUMAN
θ value	θ > 10 (rank : 320)	NC score	0.193221 (rank : 290)
Query Neighborhood Hits	297	Target Neighborhood Hits	309	Shared Neighborhood Hits	230
SwissProt Accessions	P31268, O43368, O43486, O95655, Q9NSC8, Q9UDM1	Gene names	HOXA7, HOX1A
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1).

HXA7_MOUSE
θ value	θ > 10 (rank : 321)	NC score	0.197144 (rank : 287)
Query Neighborhood Hits	297	Target Neighborhood Hits	318	Shared Neighborhood Hits	232
SwissProt Accessions	P02830, Q544P0	Gene names	Hoxa7, Hox-1.1, Hoxa-7
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1.1) (M6-12) (M6).

HXA9_HUMAN
θ value	θ > 10 (rank : 322)	NC score	0.216509 (rank : 265)
Query Neighborhood Hits	297	Target Neighborhood Hits	332	Shared Neighborhood Hits	232
SwissProt Accessions	P31269, O43369, O43429, Q99820	Gene names	HOXA9, HOX1G
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1G).

HXA9_MOUSE
θ value	θ > 10 (rank : 323)	NC score	0.216858 (rank : 264)
Query Neighborhood Hits	297	Target Neighborhood Hits	334	Shared Neighborhood Hits	232
SwissProt Accessions	P09631, O70154, O70155	Gene names	Hoxa9, Hox-1.7, Hoxa-9
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1.7).

HXB13_HUMAN
θ value	θ > 10 (rank : 324)	NC score	0.213493 (rank : 270)
Query Neighborhood Hits	297	Target Neighborhood Hits	377	Shared Neighborhood Hits	237
SwissProt Accessions	Q92826, Q96QM4, Q99810	Gene names	HOXB13
Domain Architecture
Description	Homeobox protein Hox-B13.

HXB13_MOUSE
θ value	θ > 10 (rank : 325)	NC score	0.211074 (rank : 273)
Query Neighborhood Hits	297	Target Neighborhood Hits	384	Shared Neighborhood Hits	231
SwissProt Accessions	P70321, Q80Y12	Gene names	Hoxb13
Domain Architecture
Description	Homeobox protein Hox-B13.

HXB5_HUMAN
θ value	θ > 10 (rank : 326)	NC score	0.194305 (rank : 288)
Query Neighborhood Hits	297	Target Neighborhood Hits	332	Shared Neighborhood Hits	228
SwissProt Accessions	P09067, P09069	Gene names	HOXB5, HOX2A
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2A) (HHO.C10) (HU-1).

HXB5_MOUSE
θ value	θ > 10 (rank : 327)	NC score	0.194060 (rank : 289)
Query Neighborhood Hits	297	Target Neighborhood Hits	337	Shared Neighborhood Hits	228
SwissProt Accessions	P09079, Q3ZAY8	Gene names	Hoxb5, Hox-2.1, Hoxb-5
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2.1) (MU-1) (H24.1).

HXB6_HUMAN
θ value	θ > 10 (rank : 328)	NC score	0.181390 (rank : 293)
Query Neighborhood Hits	297	Target Neighborhood Hits	307	Shared Neighborhood Hits	224
SwissProt Accessions	P17509, P09068, Q9HB11, Q9UGH2	Gene names	HOXB6, HOX2B
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2).

HXB6_MOUSE
θ value	θ > 10 (rank : 329)	NC score	0.181298 (rank : 294)
Query Neighborhood Hits	297	Target Neighborhood Hits	309	Shared Neighborhood Hits	224
SwissProt Accessions	P09023	Gene names	Hoxb6, Hox-2.2, Hoxb-6
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2.2) (Homeobox protein MH-22A).

HXB7_HUMAN
θ value	θ > 10 (rank : 330)	NC score	0.199734 (rank : 286)
Query Neighborhood Hits	297	Target Neighborhood Hits	311	Shared Neighborhood Hits	231
SwissProt Accessions	P09629, Q15957	Gene names	HOXB7, HOX2C
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2C) (HHO.C1).

HXB7_MOUSE
θ value	θ > 10 (rank : 331)	NC score	0.200975 (rank : 285)
Query Neighborhood Hits	297	Target Neighborhood Hits	314	Shared Neighborhood Hits	231
SwissProt Accessions	P09024, Q3UW15	Gene names	Hoxb7, Hox-2.3, Hoxb-7
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2.3) (MUB1) (Homeobox protein MH-22B).

HXC10_HUMAN
θ value	θ > 10 (rank : 332)	NC score	0.218127 (rank : 260)
Query Neighborhood Hits	297	Target Neighborhood Hits	417	Shared Neighborhood Hits	232
SwissProt Accessions	Q9NYD6, O15219, O15220, Q9BVD5	Gene names	HOXC10
Domain Architecture
Description	Homeobox protein Hox-C10.

HXC10_MOUSE
θ value	θ > 10 (rank : 333)	NC score	0.218182 (rank : 259)
Query Neighborhood Hits	297	Target Neighborhood Hits	417	Shared Neighborhood Hits	232
SwissProt Accessions	P31257, P31312, Q7TMT7	Gene names	Hoxc10, Hox-3.6, Hoxc-10
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C10 (Hox-3.6).

HXC5_HUMAN
θ value	θ > 10 (rank : 334)	NC score	0.205443 (rank : 280)
Query Neighborhood Hits	297	Target Neighborhood Hits	316	Shared Neighborhood Hits	228
SwissProt Accessions	Q00444	Gene names	HOXC5, HOX3D
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3D) (CP11).

HXC5_MOUSE
θ value	θ > 10 (rank : 335)	NC score	0.205456 (rank : 279)
Query Neighborhood Hits	297	Target Neighborhood Hits	316	Shared Neighborhood Hits	228
SwissProt Accessions	P32043, Q8BJW4	Gene names	Hoxc5, Hox-3.4, Hoxc-5
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3.4) (Hox-6.2).

HXC6_HUMAN
θ value	θ > 10 (rank : 336)	NC score	0.185910 (rank : 291)
Query Neighborhood Hits	297	Target Neighborhood Hits	306	Shared Neighborhood Hits	225
SwissProt Accessions	P09630	Gene names	HOXC6, HOX3C
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3C) (HHO.C8) (CP25).

HXC6_MOUSE
θ value	θ > 10 (rank : 337)	NC score	0.185910 (rank : 292)
Query Neighborhood Hits	297	Target Neighborhood Hits	306	Shared Neighborhood Hits	225
SwissProt Accessions	P10629, Q61683	Gene names	Hoxc6, Hox-3.3, Hoxc-6
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3.3) (Hox-6.1).

HXC8_HUMAN
θ value	θ > 10 (rank : 338)	NC score	0.206600 (rank : 278)
Query Neighborhood Hits	297	Target Neighborhood Hits	327	Shared Neighborhood Hits	232
SwissProt Accessions	P31273, O15221, O15362	Gene names	HOXC8, HOX3A
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3A).

HXC8_MOUSE
θ value	θ > 10 (rank : 339)	NC score	0.206608 (rank : 277)
Query Neighborhood Hits	297	Target Neighborhood Hits	327	Shared Neighborhood Hits	232
SwissProt Accessions	P09025	Gene names	Hoxc8, Hox-3.1, Hoxc-8
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3.1) (M31).

HXD13_HUMAN
θ value	θ > 10 (rank : 340)	NC score	0.202681 (rank : 284)
Query Neighborhood Hits	297	Target Neighborhood Hits	332	Shared Neighborhood Hits	229
SwissProt Accessions	P35453	Gene names	HOXD13, HOX4I
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4I).

HXD13_MOUSE
θ value	θ > 10 (rank : 341)	NC score	0.202685 (rank : 283)
Query Neighborhood Hits	297	Target Neighborhood Hits	324	Shared Neighborhood Hits	229
SwissProt Accessions	P70217, Q2VPB0, Q2VPB1, Q64177	Gene names	Hoxd13, Hox-4.8
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4.8).

HXD1_HUMAN
θ value	θ > 10 (rank : 342)	NC score	0.224963 (rank : 251)
Query Neighborhood Hits	297	Target Neighborhood Hits	337	Shared Neighborhood Hits	234
SwissProt Accessions	Q9GZZ0	Gene names	HOXD1
Domain Architecture
Description	Homeobox protein Hox-D1.

HXD3_HUMAN
θ value	θ > 10 (rank : 343)	NC score	0.236047 (rank : 236)
Query Neighborhood Hits	297	Target Neighborhood Hits	433	Shared Neighborhood Hits	241
SwissProt Accessions	P31249, Q99955, Q9BSC5	Gene names	HOXD3, HOX4A
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4A).

HXD3_MOUSE
θ value	θ > 10 (rank : 344)	NC score	0.241083 (rank : 225)
Query Neighborhood Hits	297	Target Neighborhood Hits	435	Shared Neighborhood Hits	239
SwissProt Accessions	P09027, Q3UUD3	Gene names	Hoxd3, Hox-4.1, Hoxd-3
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4.1) (Homeobox protein MH-19).

HXD4_HUMAN
θ value	θ > 10 (rank : 345)	NC score	0.217128 (rank : 263)
Query Neighborhood Hits	297	Target Neighborhood Hits	337	Shared Neighborhood Hits	227
SwissProt Accessions	P09016, Q96AU0	Gene names	HOXD4, HOX4B
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4B) (Hox-5.1) (HHO.C13).

HXD4_MOUSE
θ value	θ > 10 (rank : 346)	NC score	0.214321 (rank : 268)
Query Neighborhood Hits	297	Target Neighborhood Hits	339	Shared Neighborhood Hits	227
SwissProt Accessions	P10628, P97451, Q3UXL6	Gene names	Hoxd4, Hox-4.2, Hoxd-4
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4.2) (Hox-5.1).

IPF1_HUMAN
θ value	θ > 10 (rank : 347)	NC score	0.224918 (rank : 252)
Query Neighborhood Hits	297	Target Neighborhood Hits	330	Shared Neighborhood Hits	233
SwissProt Accessions	P52945, O60594	Gene names	IPF1, PDX1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Pancreas/duodenum homeobox 1) (PDX- 1) (Islet/duodenum homeobox-1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Insulin upstream factor 1) (IUF-1) (Glucose- sensitive factor) (GSF).

IPF1_MOUSE
θ value	θ > 10 (rank : 348)	NC score	0.225122 (rank : 250)
Query Neighborhood Hits	297	Target Neighborhood Hits	340	Shared Neighborhood Hits	233
SwissProt Accessions	P52946	Gene names	Ipf1, Pdx1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Islet/duodenum homeobox 1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Pancreas/duodenum homeobox 1).

IRX4_HUMAN
θ value	θ > 10 (rank : 349)	NC score	0.069602 (rank : 344)
Query Neighborhood Hits	297	Target Neighborhood Hits	276	Shared Neighborhood Hits	167
SwissProt Accessions	P78413, Q9UHR2	Gene names	IRX4, IRXA3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

IRX4_MOUSE
θ value	θ > 10 (rank : 350)	NC score	0.070453 (rank : 343)
Query Neighborhood Hits	297	Target Neighborhood Hits	286	Shared Neighborhood Hits	166
SwissProt Accessions	Q9QY61	Gene names	Irx4, Irxa3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

IRX6_HUMAN
θ value	θ > 10 (rank : 351)	NC score	0.070695 (rank : 342)
Query Neighborhood Hits	297	Target Neighborhood Hits	262	Shared Neighborhood Hits	151
SwissProt Accessions	P78412, Q7Z2K0	Gene names	IRX6, IRX7, IRXB3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

IRX6_MOUSE
θ value	θ > 10 (rank : 352)	NC score	0.076273 (rank : 334)
Query Neighborhood Hits	297	Target Neighborhood Hits	256	Shared Neighborhood Hits	149
SwissProt Accessions	Q9ER75	Gene names	Irx6, Irxb3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

LHX2_HUMAN
θ value	θ > 10 (rank : 353)	NC score	0.247153 (rank : 208)
Query Neighborhood Hits	297	Target Neighborhood Hits	432	Shared Neighborhood Hits	236
SwissProt Accessions	P50458, O95860, Q8N1Z3	Gene names	LHX2, LH2
Domain Architecture
Description	LIM/homeobox protein Lhx2 (Homeobox protein LH-2).

LHX2_MOUSE
θ value	θ > 10 (rank : 354)	NC score	0.246835 (rank : 209)
Query Neighborhood Hits	297	Target Neighborhood Hits	431	Shared Neighborhood Hits	236
SwissProt Accessions	Q9Z0S2	Gene names	Lhx2
Domain Architecture
Description	LIM/homeobox protein Lhx2.

LHX8_MOUSE
θ value	θ > 10 (rank : 355)	NC score	0.272172 (rank : 163)
Query Neighborhood Hits	297	Target Neighborhood Hits	406	Shared Neighborhood Hits	235
SwissProt Accessions	O35652, O70163, O88707	Gene names	Lhx8, Lhx7
Domain Architecture
Description	LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3).

LHX9_HUMAN
θ value	θ > 10 (rank : 356)	NC score	0.247916 (rank : 204)
Query Neighborhood Hits	297	Target Neighborhood Hits	444	Shared Neighborhood Hits	236
SwissProt Accessions	Q9NQ69, Q5VUE3, Q9BYU6, Q9NQ70	Gene names	LHX9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

LHX9_MOUSE
θ value	θ > 10 (rank : 357)	NC score	0.247930 (rank : 203)
Query Neighborhood Hits	297	Target Neighborhood Hits	445	Shared Neighborhood Hits	236
SwissProt Accessions	Q9WUH2, Q9QYQ5, Q9QYQ6, Q9QZ00, Q9WU44	Gene names	Lhx9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

LMO3_HUMAN
θ value	θ > 10 (rank : 358)	NC score	0.075613 (rank : 337)
Query Neighborhood Hits	297	Target Neighborhood Hits	111	Shared Neighborhood Hits	19
SwissProt Accessions	Q8TAP4, Q8N974, Q9UDD5	Gene names	LMO3, RBTN3, RHOM3
Domain Architecture
Description	LIM-only protein 3 (Neuronal-specific transcription factor DAT1) (Rhombotin-3).

LMO3_MOUSE
θ value	θ > 10 (rank : 359)	NC score	0.075613 (rank : 338)
Query Neighborhood Hits	297	Target Neighborhood Hits	111	Shared Neighborhood Hits	19
SwissProt Accessions	Q8BZL8	Gene names	Lmo3
Domain Architecture
Description	LIM-only protein 3 (Neuronal-specific transcription factor DAT1).

LMO4_HUMAN
θ value	θ > 10 (rank : 360)	NC score	0.078424 (rank : 331)
Query Neighborhood Hits	297	Target Neighborhood Hits	111	Shared Neighborhood Hits	20
SwissProt Accessions	P61968, O00158, O88894	Gene names	LMO4
Domain Architecture
Description	LIM domain transcription factor LMO4 (LIM domain only protein 4) (LMO- 4) (Breast tumor autoantigen).

LMO4_MOUSE
θ value	θ > 10 (rank : 361)	NC score	0.078424 (rank : 332)
Query Neighborhood Hits	297	Target Neighborhood Hits	111	Shared Neighborhood Hits	20
SwissProt Accessions	P61969, O00158, O88894	Gene names	Lmo4
Domain Architecture
Description	LIM domain transcription factor LMO4 (LIM domain only protein 4) (LMO- 4) (Breast tumor autoantigen).

ONEC2_HUMAN
θ value	θ > 10 (rank : 362)	NC score	0.099324 (rank : 314)
Query Neighborhood Hits	297	Target Neighborhood Hits	115	Shared Neighborhood Hits	69
SwissProt Accessions	O95948	Gene names	ONECUT2
Domain Architecture
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

ONEC2_MOUSE
θ value	θ > 10 (rank : 363)	NC score	0.096409 (rank : 317)
Query Neighborhood Hits	297	Target Neighborhood Hits	123	Shared Neighborhood Hits	69
SwissProt Accessions	Q6XBJ3	Gene names	Onecut2, Oc2
Domain Architecture	No domain graphic available
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

PBX1_HUMAN
θ value	θ > 10 (rank : 364)	NC score	0.097832 (rank : 315)
Query Neighborhood Hits	297	Target Neighborhood Hits	317	Shared Neighborhood Hits	194
SwissProt Accessions	P40424	Gene names	PBX1, PRL
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1) (Homeobox protein PRL).

PBX1_MOUSE
θ value	θ > 10 (rank : 365)	NC score	0.097832 (rank : 316)
Query Neighborhood Hits	297	Target Neighborhood Hits	317	Shared Neighborhood Hits	194
SwissProt Accessions	P41778	Gene names	Pbx1, Pbx-1
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1).

PBX2_HUMAN
θ value	θ > 10 (rank : 366)	NC score	0.107858 (rank : 311)
Query Neighborhood Hits	297	Target Neighborhood Hits	350	Shared Neighborhood Hits	203
SwissProt Accessions	P40425	Gene names	PBX2, G17
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2) (Protein G17).

PBX2_MOUSE
θ value	θ > 10 (rank : 367)	NC score	0.110752 (rank : 308)
Query Neighborhood Hits	297	Target Neighborhood Hits	341	Shared Neighborhood Hits	203
SwissProt Accessions	O35984	Gene names	Pbx2
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2).

PBX3_HUMAN
θ value	θ > 10 (rank : 368)	NC score	0.096178 (rank : 319)
Query Neighborhood Hits	297	Target Neighborhood Hits	306	Shared Neighborhood Hits	197
SwissProt Accessions	P40426, Q96PF9, Q96PG0	Gene names	PBX3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX3_MOUSE
θ value	θ > 10 (rank : 369)	NC score	0.096191 (rank : 318)
Query Neighborhood Hits	297	Target Neighborhood Hits	306	Shared Neighborhood Hits	197
SwissProt Accessions	O35317, Q925W2	Gene names	Pbx3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX4_MOUSE
θ value	θ > 10 (rank : 370)	NC score	0.094353 (rank : 320)
Query Neighborhood Hits	297	Target Neighborhood Hits	324	Shared Neighborhood Hits	197
SwissProt Accessions	Q99NE9, Q8CFL2, Q99NE8	Gene names	Pbx4
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 4 (Homeobox protein PBX4).

PEPP2_HUMAN
θ value	θ > 10 (rank : 371)	NC score	0.223101 (rank : 253)
Query Neighborhood Hits	297	Target Neighborhood Hits	316	Shared Neighborhood Hits	223
SwissProt Accessions	Q9BQY4, Q9BR00	Gene names	PEPP2, THG1
Domain Architecture
Description	Paired-like homeobox protein PEPP-2 (Testis homeobox gene 1).

PHX2A_HUMAN
θ value	θ > 10 (rank : 372)	NC score	0.250140 (rank : 200)
Query Neighborhood Hits	297	Target Neighborhood Hits	345	Shared Neighborhood Hits	237
SwissProt Accessions	O14813, Q8IVZ2	Gene names	PHOX2A, ARIX, PMX2A
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (Aristaless homeobox protein homolog) (ARIX1 homeodomain protein).

PHX2A_MOUSE
θ value	θ > 10 (rank : 373)	NC score	0.251229 (rank : 196)
Query Neighborhood Hits	297	Target Neighborhood Hits	338	Shared Neighborhood Hits	238
SwissProt Accessions	Q62066	Gene names	Phox2a, Arix, Phox2, Pmx2, Pmx2a
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (PHOX2A homeodomain protein) (Aristaless homeobox protein homolog).

PHX2B_HUMAN
θ value	θ > 10 (rank : 374)	NC score	0.247499 (rank : 205)
Query Neighborhood Hits	297	Target Neighborhood Hits	407	Shared Neighborhood Hits	236
SwissProt Accessions	Q99453, Q6PJD9	Gene names	PHOX2B, PMX2B
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

PHX2B_MOUSE
θ value	θ > 10 (rank : 375)	NC score	0.247499 (rank : 206)
Query Neighborhood Hits	297	Target Neighborhood Hits	407	Shared Neighborhood Hits	236
SwissProt Accessions	O35690	Gene names	Phox2b, Pmx2b
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

PITX3_HUMAN
θ value	θ > 10 (rank : 376)	NC score	0.264718 (rank : 170)
Query Neighborhood Hits	297	Target Neighborhood Hits	366	Shared Neighborhood Hits	242
SwissProt Accessions	O75364	Gene names	PITX3, PTX3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

PITX3_MOUSE
θ value	θ > 10 (rank : 377)	NC score	0.265187 (rank : 168)
Query Neighborhood Hits	297	Target Neighborhood Hits	380	Shared Neighborhood Hits	243
SwissProt Accessions	O35160	Gene names	Pitx3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

RBTN1_HUMAN
θ value	θ > 10 (rank : 378)	NC score	0.076019 (rank : 335)
Query Neighborhood Hits	297	Target Neighborhood Hits	110	Shared Neighborhood Hits	19
SwissProt Accessions	P25800, Q4VBC5	Gene names	LMO1, RBTN1, RHOM1, TTG1
Domain Architecture
Description	Rhombotin-1 (Cysteine-rich protein TTG-1) (T-cell translocation protein 1) (LIM-only protein 1).

RBTN1_MOUSE
θ value	θ > 10 (rank : 379)	NC score	0.076016 (rank : 336)
Query Neighborhood Hits	297	Target Neighborhood Hits	109	Shared Neighborhood Hits	19
SwissProt Accessions	Q924W9	Gene names	Lmo1, Rbtn1, Rhom1, Ttg1
Domain Architecture	No domain graphic available
Description	Rhombotin-1 (Cysteine-rich protein TTG-1) (LIM-only protein 1).

RBTN2_HUMAN
θ value	θ > 10 (rank : 380)	NC score	0.073111 (rank : 341)
Query Neighborhood Hits	297	Target Neighborhood Hits	114	Shared Neighborhood Hits	20
SwissProt Accessions	P25791, Q9HD58	Gene names	LMO2, RBTN2, RHOM2, TTG2
Domain Architecture
Description	Rhombotin-2 (Cysteine-rich protein TTG-2) (T-cell translocation protein 2) (LIM-only protein 2).

RBTN2_MOUSE
θ value	θ > 10 (rank : 381)	NC score	0.073113 (rank : 340)
Query Neighborhood Hits	297	Target Neighborhood Hits	114	Shared Neighborhood Hits	20
SwissProt Accessions	P25801	Gene names	Lmo2, Rbtn-2, Rbtn2, Rhom-2
Domain Architecture
Description	Rhombotin-2 (Cysteine-rich protein TTG-2) (T-cell translocation protein 2) (LIM-only protein 2).

RHOX5_MOUSE
θ value	θ > 10 (rank : 382)	NC score	0.053368 (rank : 348)
Query Neighborhood Hits	297	Target Neighborhood Hits	69	Shared Neighborhood Hits	47
SwissProt Accessions	P52651	Gene names	Rhox5, Pem
Domain Architecture	No domain graphic available
Description	Homeobox protein Rhox5 (Reproductive homeobox on chromosome X 5) (Homeobox protein Pem) (Placenta and embryonic expression protein).

SIX3_HUMAN
θ value	θ > 10 (rank : 383)	NC score	0.088616 (rank : 324)
Query Neighborhood Hits	297	Target Neighborhood Hits	285	Shared Neighborhood Hits	190
SwissProt Accessions	O95343	Gene names	SIX3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX3_MOUSE
θ value	θ > 10 (rank : 384)	NC score	0.088595 (rank : 325)
Query Neighborhood Hits	297	Target Neighborhood Hits	289	Shared Neighborhood Hits	190
SwissProt Accessions	Q62233, P70176, P70177	Gene names	Six3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX4_HUMAN
θ value	θ > 10 (rank : 385)	NC score	0.106202 (rank : 313)
Query Neighborhood Hits	297	Target Neighborhood Hits	342	Shared Neighborhood Hits	201
SwissProt Accessions	Q9UIU6	Gene names	SIX4
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4).

SIX4_MOUSE
θ value	θ > 10 (rank : 386)	NC score	0.106497 (rank : 312)
Query Neighborhood Hits	297	Target Neighborhood Hits	341	Shared Neighborhood Hits	198
SwissProt Accessions	Q61321, Q61322, Q61323	Gene names	Six4, Arec3
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4) (Skeletal muscle-specific ARE-binding protein AREC3).

SIX5_HUMAN
θ value	θ > 10 (rank : 387)	NC score	0.079627 (rank : 330)
Query Neighborhood Hits	297	Target Neighborhood Hits	386	Shared Neighborhood Hits	176
SwissProt Accessions	Q8N196	Gene names	SIX5, DMAHP
Domain Architecture	No domain graphic available
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein).

SIX5_MOUSE
θ value	θ > 10 (rank : 388)	NC score	0.064247 (rank : 346)
Query Neighborhood Hits	297	Target Neighborhood Hits	354	Shared Neighborhood Hits	156
SwissProt Accessions	P70178	Gene names	Six5, Dmahp
Domain Architecture
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein homolog).

SIX6_HUMAN
θ value	θ > 10 (rank : 389)	NC score	0.089443 (rank : 322)
Query Neighborhood Hits	297	Target Neighborhood Hits	269	Shared Neighborhood Hits	183
SwissProt Accessions	O95475, Q9P1X8	Gene names	SIX6, OPTX2, SIX9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Homeodomain protein OPTX2).

SIX6_MOUSE
θ value	θ > 10 (rank : 390)	NC score	0.085219 (rank : 326)
Query Neighborhood Hits	297	Target Neighborhood Hits	267	Shared Neighborhood Hits	185
SwissProt Accessions	Q9QZ28, O88423	Gene names	Six6, Optx2, Six9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Six9 protein).

ZHX1_HUMAN
θ value	θ > 10 (rank : 391)	NC score	0.084376 (rank : 327)
Query Neighborhood Hits	297	Target Neighborhood Hits	307	Shared Neighborhood Hits	160
SwissProt Accessions	Q9UKY1, Q8IWD8	Gene names	ZHX1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

ZHX1_MOUSE
θ value	θ > 10 (rank : 392)	NC score	0.090689 (rank : 321)
Query Neighborhood Hits	297	Target Neighborhood Hits	334	Shared Neighborhood Hits	169
SwissProt Accessions	P70121, Q8BQ68, Q8C6T4, Q8CJG3	Gene names	Zhx1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

ZHX2_MOUSE
θ value	θ > 10 (rank : 393)	NC score	0.074620 (rank : 339)
Query Neighborhood Hits	297	Target Neighborhood Hits	435	Shared Neighborhood Hits	141
SwissProt Accessions	Q8C0C0	Gene names	Zhx2, Afr1, Raf
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

ZHX3_HUMAN
θ value	θ > 10 (rank : 394)	NC score	0.128047 (rank : 304)
Query Neighborhood Hits	297	Target Neighborhood Hits	331	Shared Neighborhood Hits	171
SwissProt Accessions	Q9H4I2, O43145	Gene names	ZHX3, KIAA0395, TIX1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

Hits sorted by NC score

PO3F4_HUMAN
NC score	0.999962 (rank : 1)	θ value	0 (rank : 1)
Query Neighborhood Hits	297	Target Neighborhood Hits	297	Shared Neighborhood Hits	297
SwissProt Accessions	P49335, Q5H9G9, Q99410	Gene names	POU3F4, BRN4, OTF9
Domain Architecture
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

PO3F4_MOUSE
NC score	0.998913 (rank : 2)	θ value	0 (rank : 2)
Query Neighborhood Hits	297	Target Neighborhood Hits	281	Shared Neighborhood Hits	275
SwissProt Accessions	P62515, P25216	Gene names	Pou3f4, Brn-4, Brn4, Otf9
Domain Architecture	No domain graphic available
Description	POU domain, class 3, transcription factor 4 (Brain-specific homeobox/POU domain protein 4) (Brain-4) (Brn-4).

PO3F2_HUMAN
NC score	0.985969 (rank : 3)	θ value	1.17728e-108 (rank : 3)
Query Neighborhood Hits	297	Target Neighborhood Hits	308	Shared Neighborhood Hits	252
SwissProt Accessions	P20265, Q14960, Q86V54, Q9UJL0	Gene names	POU3F2, BRN2, OCT7, OTF7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

PO3F2_MOUSE
NC score	0.985897 (rank : 4)	θ value	2.00813e-108 (rank : 4)
Query Neighborhood Hits	297	Target Neighborhood Hits	313	Shared Neighborhood Hits	252
SwissProt Accessions	P31360	Gene names	Pou3f2, Brn-2, Brn2, Otf7
Domain Architecture
Description	POU domain, class 3, transcription factor 2 (Nervous system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2).

PO3F3_MOUSE
NC score	0.985266 (rank : 5)	θ value	1.87955e-106 (rank : 5)
Query Neighborhood Hits	297	Target Neighborhood Hits	308	Shared Neighborhood Hits	250
SwissProt Accessions	P31361	Gene names	Pou3f3, Brn-1, Brn1, Otf8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

PO3F3_HUMAN
NC score	0.985238 (rank : 6)	θ value	1.75921e-104 (rank : 6)
Query Neighborhood Hits	297	Target Neighborhood Hits	311	Shared Neighborhood Hits	250
SwissProt Accessions	P20264, P78379	Gene names	POU3F3, BRN1, OTF8
Domain Architecture
Description	POU domain, class 3, transcription factor 3 (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein).

PO3F1_HUMAN
NC score	0.984321 (rank : 7)	θ value	1.54831e-84 (rank : 7)
Query Neighborhood Hits	297	Target Neighborhood Hits	256	Shared Neighborhood Hits	230
SwissProt Accessions	Q03052	Gene names	POU3F1, OCT6, OTF6
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

PO3F1_MOUSE
NC score	0.983516 (rank : 8)	θ value	4.50487e-84 (rank : 8)
Query Neighborhood Hits	297	Target Neighborhood Hits	261	Shared Neighborhood Hits	231
SwissProt Accessions	P21952	Gene names	Pou3f1, Oct6, Otf-6, Otf6, Scip
Domain Architecture
Description	POU domain, class 3, transcription factor 1 (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP).

PIT1_MOUSE
NC score	0.943608 (rank : 9)	θ value	6.35935e-46 (rank : 19)
Query Neighborhood Hits	297	Target Neighborhood Hits	313	Shared Neighborhood Hits	245
SwissProt Accessions	Q00286	Gene names	Pou1f1, Pit-1, Pit1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

PIT1_HUMAN
NC score	0.940676 (rank : 10)	θ value	4.122e-45 (rank : 21)
Query Neighborhood Hits	297	Target Neighborhood Hits	292	Shared Neighborhood Hits	237
SwissProt Accessions	P28069, O75757, Q15132, Q15133, Q9UEL3	Gene names	POU1F1, GHF1, PIT1
Domain Architecture
Description	Pituitary-specific positive transcription factor 1 (Pit-1) (Growth hormone factor 1) (GHF-1).

PO2F3_HUMAN
NC score	0.937869 (rank : 11)	θ value	1.11993e-50 (rank : 11)
Query Neighborhood Hits	297	Target Neighborhood Hits	319	Shared Neighborhood Hits	242
SwissProt Accessions	Q9UKI9, Q9UKR7, Q9Y504	Gene names	POU2F3, OTF11, PLA1
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Transcription factor Skn-1) (PLA-1 protein).

PO2F3_MOUSE
NC score	0.935922 (rank : 12)	θ value	1.11993e-50 (rank : 12)
Query Neighborhood Hits	297	Target Neighborhood Hits	328	Shared Neighborhood Hits	243
SwissProt Accessions	P31362	Gene names	Pou2f3, Epoc1, Oct11, Otf-11, Otf11
Domain Architecture
Description	POU domain, class 2, transcription factor 3 (Octamer-binding transcription factor 11) (Oct-11) (Epoc-1).

PO5F1_MOUSE
NC score	0.934475 (rank : 13)	θ value	7.51208e-47 (rank : 16)
Query Neighborhood Hits	297	Target Neighborhood Hits	305	Shared Neighborhood Hits	222
SwissProt Accessions	P20263, Q63843	Gene names	Pou5f1, Oct-3, Oct-4, Otf-3, Otf3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4) (NF-A3).

PO2F1_MOUSE
NC score	0.932590 (rank : 14)	θ value	2.25659e-51 (rank : 10)
Query Neighborhood Hits	297	Target Neighborhood Hits	408	Shared Neighborhood Hits	241
SwissProt Accessions	P25425, Q61994, Q63891, Q6Y681, Q7TSD0, Q8BT04, Q8K570, Q99JH0, Q9WTZ4, Q9WTZ5, Q9WTZ6	Gene names	Pou2f1, Oct-1, Otf-1, Otf1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

PO2F1_HUMAN
NC score	0.931407 (rank : 15)	θ value	5.93839e-52 (rank : 9)
Query Neighborhood Hits	297	Target Neighborhood Hits	426	Shared Neighborhood Hits	248
SwissProt Accessions	P14859, Q5TBT7, Q6PK46, Q8NEU9, Q9BPV1	Gene names	POU2F1, OCT1, OTF1
Domain Architecture
Description	POU domain, class 2, transcription factor 1 (Octamer-binding transcription factor 1) (Oct-1) (OTF-1) (NF-A1).

PO2F2_MOUSE
NC score	0.929636 (rank : 16)	θ value	9.48078e-50 (rank : 14)
Query Neighborhood Hits	297	Target Neighborhood Hits	353	Shared Neighborhood Hits	235
SwissProt Accessions	Q00196, Q00197, Q00198, Q00199, Q00200, Q00201, Q05882, Q61995, Q61996, Q64245	Gene names	Pou2f2, Oct2, Otf2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

PO2F2_HUMAN
NC score	0.928106 (rank : 17)	θ value	5.55816e-50 (rank : 13)
Query Neighborhood Hits	297	Target Neighborhood Hits	379	Shared Neighborhood Hits	238
SwissProt Accessions	P09086, Q16648, Q9BRS4	Gene names	POU2F2, OCT2, OTF2
Domain Architecture
Description	POU domain, class 2, transcription factor 2 (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2).

PO5FM_HUMAN
NC score	0.927463 (rank : 18)	θ value	1.67352e-46 (rank : 18)
Query Neighborhood Hits	297	Target Neighborhood Hits	212	Shared Neighborhood Hits	167
SwissProt Accessions	Q9BZV7	Gene names	POU5F1P1, POU5FLC20
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 2.

PO5F1_HUMAN
NC score	0.926601 (rank : 19)	θ value	3.98324e-48 (rank : 15)
Query Neighborhood Hits	297	Target Neighborhood Hits	321	Shared Neighborhood Hits	220
SwissProt Accessions	Q01860, P31359, Q15167, Q15168, Q16422	Gene names	POU5F1, OCT3, OCT4, OTF3
Domain Architecture
Description	POU domain, class 5, transcription factor 1 (Octamer-binding transcription factor 3) (Oct-3) (Oct-4).

PO5FL_HUMAN
NC score	0.926039 (rank : 20)	θ value	1.85029e-45 (rank : 20)
Query Neighborhood Hits	297	Target Neighborhood Hits	214	Shared Neighborhood Hits	164
SwissProt Accessions	Q06416, Q9BZV9	Gene names	POU5F1P1, OTF3C, POU5FLC8
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 1 (Octamer- binding protein 3-like).

PO5FN_HUMAN
NC score	0.925522 (rank : 21)	θ value	9.81109e-47 (rank : 17)
Query Neighborhood Hits	297	Target Neighborhood Hits	134	Shared Neighborhood Hits	101
SwissProt Accessions	Q9BZW0	Gene names	POU5FLC1
Domain Architecture
Description	POU domain, class 5, transcription factor 1-like protein 3.

PO4F1_MOUSE
NC score	0.910393 (rank : 22)	θ value	1.6774e-38 (rank : 23)
Query Neighborhood Hits	297	Target Neighborhood Hits	345	Shared Neighborhood Hits	242
SwissProt Accessions	P17208	Gene names	Pou4f1, Brn-3, Brn3, Brn3a
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Brn-3.0).

SPRM1_HUMAN
NC score	0.909512 (rank : 23)	θ value	3.27365e-34 (rank : 28)
Query Neighborhood Hits	297	Target Neighborhood Hits	72	Shared Neighborhood Hits	66
SwissProt Accessions	Q8N7G0, Q8N748	Gene names	SPRM1
Domain Architecture
Description	Sperm 1 POU-domain transcription factor (SPRM-1).

PO4F1_HUMAN
NC score	0.907679 (rank : 24)	θ value	1.28434e-38 (rank : 22)
Query Neighborhood Hits	297	Target Neighborhood Hits	342	Shared Neighborhood Hits	242
SwissProt Accessions	Q01851, Q14986, Q15318	Gene names	POU4F1, BRN3A, RDC1
Domain Architecture
Description	POU domain, class 4, transcription factor 1 (Brain-specific homeobox/POU domain protein 3A) (Brn-3A) (Oct-T1) (Homeobox/POU domain protein RDC-1).

PO4F2_MOUSE
NC score	0.907104 (rank : 25)	θ value	4.13158e-37 (rank : 24)
Query Neighborhood Hits	297	Target Neighborhood Hits	312	Shared Neighborhood Hits	236
SwissProt Accessions	Q63934, Q63954	Gene names	Pou4f2, Brn3b
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B) (Brn-3.2).

PO4F2_HUMAN
NC score	0.905409 (rank : 26)	θ value	2.67802e-36 (rank : 25)
Query Neighborhood Hits	297	Target Neighborhood Hits	310	Shared Neighborhood Hits	236
SwissProt Accessions	Q12837, Q13883, Q14987	Gene names	POU4F2, BRN3B
Domain Architecture
Description	POU domain, class 4, transcription factor 2 (Brain-specific homeobox/POU domain protein 3B) (Brn-3B).

PO4F3_HUMAN
NC score	0.901366 (rank : 27)	θ value	1.32909e-35 (rank : 26)
Query Neighborhood Hits	297	Target Neighborhood Hits	307	Shared Neighborhood Hits	234
SwissProt Accessions	Q15319, O60557	Gene names	POU4F3, BRN3C
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

PO4F3_MOUSE
NC score	0.900987 (rank : 28)	θ value	1.32909e-35 (rank : 27)
Query Neighborhood Hits	297	Target Neighborhood Hits	311	Shared Neighborhood Hits	235
SwissProt Accessions	Q63955	Gene names	Pou4f3, Brn-3c, Brn3c
Domain Architecture
Description	POU domain, class 4, transcription factor 3 (Brain-specific homeobox/POU domain protein 3C) (Brn-3C).

SPRM1_MOUSE
NC score	0.895875 (rank : 29)	θ value	5.22648e-32 (rank : 29)
Query Neighborhood Hits	297	Target Neighborhood Hits	73	Shared Neighborhood Hits	59
SwissProt Accessions	Q9DAC9	Gene names	Sprm1
Domain Architecture
Description	Sperm 1 POU-domain transcription factor (SPRM-1).

PO6F1_HUMAN
NC score	0.869879 (rank : 30)	θ value	9.8567e-31 (rank : 30)
Query Neighborhood Hits	297	Target Neighborhood Hits	370	Shared Neighborhood Hits	239
SwissProt Accessions	Q14863	Gene names	POU6F1, BRN5, MPOU, TCFB1
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (mPOU homeobox protein) (Brain-specific homeobox/POU domain protein 5) (Brain-5) (Brn-5 protein).

PO6F1_MOUSE
NC score	0.842343 (rank : 31)	θ value	4.89182e-30 (rank : 31)
Query Neighborhood Hits	297	Target Neighborhood Hits	581	Shared Neighborhood Hits	247
SwissProt Accessions	Q07916, Q91XK3	Gene names	Pou6f1, Emb
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (Octamer-binding transcription factor EMB) (Transcription regulatory protein MCP-1).

PO6F2_HUMAN
NC score	0.781705 (rank : 32)	θ value	9.87957e-23 (rank : 32)
Query Neighborhood Hits	297	Target Neighborhood Hits	618	Shared Neighborhood Hits	248
SwissProt Accessions	P78424, P78425, Q75ME8, Q86UM6, Q9UDS7	Gene names	POU6F2, RPF1
Domain Architecture
Description	POU domain, class 6, transcription factor 2 (Retina-derived POU-domain factor 1) (RPF-1).

PO6F2_MOUSE
NC score	0.776315 (rank : 33)	θ value	2.87452e-22 (rank : 33)
Query Neighborhood Hits	297	Target Neighborhood Hits	639	Shared Neighborhood Hits	253
SwissProt Accessions	Q8BJI4	Gene names	Pou6f2
Domain Architecture	No domain graphic available
Description	POU domain, class 6, transcription factor 2.

LHX5_HUMAN
NC score	0.373918 (rank : 34)	θ value	2.88788e-06 (rank : 34)
Query Neighborhood Hits	297	Target Neighborhood Hits	453	Shared Neighborhood Hits	248
SwissProt Accessions	Q9H2C1	Gene names	LHX5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

LHX5_MOUSE
NC score	0.370657 (rank : 35)	θ value	3.77169e-06 (rank : 35)
Query Neighborhood Hits	297	Target Neighborhood Hits	456	Shared Neighborhood Hits	248
SwissProt Accessions	P61375, P50459	Gene names	Lhx5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

LHX1_HUMAN
NC score	0.362864 (rank : 36)	θ value	7.1131e-05 (rank : 38)
Query Neighborhood Hits	297	Target Neighborhood Hits	453	Shared Neighborhood Hits	246
SwissProt Accessions	P48742, Q3MIW0	Gene names	LHX1, LIM1
Domain Architecture
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

VAX2_HUMAN
NC score	0.359587 (rank : 37)	θ value	0.00175202 (rank : 49)
Query Neighborhood Hits	297	Target Neighborhood Hits	337	Shared Neighborhood Hits	244
SwissProt Accessions	Q9UIW0	Gene names	VAX2
Domain Architecture
Description	Ventral anterior homeobox 2.

VAX2_MOUSE
NC score	0.359315 (rank : 38)	θ value	0.00175202 (rank : 50)
Query Neighborhood Hits	297	Target Neighborhood Hits	338	Shared Neighborhood Hits	244
SwissProt Accessions	Q9WTP9	Gene names	Vax2, Vex
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 2 (Ventral retina homeodomain protein).

LHX1_MOUSE
NC score	0.359288 (rank : 39)	θ value	0.000121331 (rank : 39)
Query Neighborhood Hits	297	Target Neighborhood Hits	453	Shared Neighborhood Hits	246
SwissProt Accessions	P63006, P36199	Gene names	Lhx1, Lim-1, Lim1
Domain Architecture	No domain graphic available
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

VAX1_MOUSE
NC score	0.358127 (rank : 40)	θ value	0.000786445 (rank : 45)
Query Neighborhood Hits	297	Target Neighborhood Hits	351	Shared Neighborhood Hits	244
SwissProt Accessions	Q2NKI2, O88880	Gene names	Vax1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

VAX1_HUMAN
NC score	0.357722 (rank : 41)	θ value	0.000786445 (rank : 44)
Query Neighborhood Hits	297	Target Neighborhood Hits	355	Shared Neighborhood Hits	244
SwissProt Accessions	Q5SQQ9, Q6ZSX0	Gene names	VAX1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

HESX1_MOUSE
NC score	0.356331 (rank : 42)	θ value	0.0252991 (rank : 68)
Query Neighborhood Hits	297	Target Neighborhood Hits	331	Shared Neighborhood Hits	245
SwissProt Accessions	Q61658, Q61047	Gene names	Hesx1, Hes-1, Rpx
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (Anterior- restricted homeobox protein) (Rathke pouch homeo box).

HESX1_HUMAN
NC score	0.347324 (rank : 43)	θ value	0.0563607 (rank : 89)
Query Neighborhood Hits	297	Target Neighborhood Hits	326	Shared Neighborhood Hits	245
SwissProt Accessions	Q9UBX0, Q99667	Gene names	HESX1, HANF
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (hAnf).

LHX3_MOUSE
NC score	0.342383 (rank : 44)	θ value	5.44631e-05 (rank : 37)
Query Neighborhood Hits	297	Target Neighborhood Hits	451	Shared Neighborhood Hits	247
SwissProt Accessions	P50481, Q61800, Q61801	Gene names	Lhx3, Lim-3, Lim3, Plim
Domain Architecture
Description	LIM/homeobox protein Lhx3 (Homeobox protein LIM-3) (Homeobox protein P-LIM) (LIM homeobox protein 3).

LHX3_HUMAN
NC score	0.341068 (rank : 45)	θ value	5.44631e-05 (rank : 36)
Query Neighborhood Hits	297	Target Neighborhood Hits	474	Shared Neighborhood Hits	247
SwissProt Accessions	Q9UBR4, Q9NZB5, Q9P0I8, Q9P0I9	Gene names	LHX3
Domain Architecture
Description	LIM/homeobox protein Lhx3.

ESX1L_HUMAN
NC score	0.336621 (rank : 46)	θ value	0.0563607 (rank : 88)
Query Neighborhood Hits	297	Target Neighborhood Hits	498	Shared Neighborhood Hits	252
SwissProt Accessions	Q8N693, Q7Z6K7	Gene names	ESX1L, ESX1R
Domain Architecture
Description	Extraembryonic, spermatogenesis, homeobox 1-like protein.

GSCL_HUMAN
NC score	0.334744 (rank : 47)	θ value	0.163984 (rank : 120)
Query Neighborhood Hits	297	Target Neighborhood Hits	343	Shared Neighborhood Hits	247
SwissProt Accessions	O15499	Gene names	GSCL
Domain Architecture
Description	Homeobox protein goosecoid-like (GSC-2).

LHX4_HUMAN
NC score	0.333676 (rank : 48)	θ value	0.000461057 (rank : 41)
Query Neighborhood Hits	297	Target Neighborhood Hits	455	Shared Neighborhood Hits	248
SwissProt Accessions	Q969G2, Q8NHE0, Q8TCJ1, Q8WWX2, Q969W2	Gene names	LHX4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

LHX4_MOUSE
NC score	0.333550 (rank : 49)	θ value	0.000461057 (rank : 42)
Query Neighborhood Hits	297	Target Neighborhood Hits	457	Shared Neighborhood Hits	248
SwissProt Accessions	P53776, O08916, Q9R280	Gene names	Lhx4, Gsh-4, Gsh4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

GSC_HUMAN
NC score	0.333309 (rank : 50)	θ value	0.125558 (rank : 108)
Query Neighborhood Hits	297	Target Neighborhood Hits	369	Shared Neighborhood Hits	249
SwissProt Accessions	P56915, Q86YR1	Gene names	GSC
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid.

GSC_MOUSE
NC score	0.332950 (rank : 51)	θ value	0.125558 (rank : 109)
Query Neighborhood Hits	297	Target Neighborhood Hits	368	Shared Neighborhood Hits	249
SwissProt Accessions	Q02591	Gene names	Gsc
Domain Architecture
Description	Homeobox protein goosecoid.

ZFHX2_HUMAN
NC score	0.331252 (rank : 52)	θ value	0.00228821 (rank : 51)
Query Neighborhood Hits	297	Target Neighborhood Hits	1178	Shared Neighborhood Hits	247
SwissProt Accessions	Q9C0A1	Gene names	ZFHX2, KIAA1762
Domain Architecture
Description	Zinc finger homeobox protein 2.

GBX1_HUMAN
NC score	0.330408 (rank : 53)	θ value	0.00175202 (rank : 48)
Query Neighborhood Hits	297	Target Neighborhood Hits	334	Shared Neighborhood Hits	240
SwissProt Accessions	Q14549	Gene names	GBX1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

HXD12_MOUSE
NC score	0.330077 (rank : 54)	θ value	0.00102713 (rank : 46)
Query Neighborhood Hits	297	Target Neighborhood Hits	370	Shared Neighborhood Hits	246
SwissProt Accessions	P23812	Gene names	Hoxd12, Hox-4.7, Hoxd-12
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4.7) (Hox-5.6).

MSX2_MOUSE
NC score	0.325172 (rank : 55)	θ value	0.0148317 (rank : 65)
Query Neighborhood Hits	297	Target Neighborhood Hits	345	Shared Neighborhood Hits	241
SwissProt Accessions	Q03358, Q63856	Gene names	Msx2, Hox-8.1, Msx-2
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8.1).

GSCL_MOUSE
NC score	0.322642 (rank : 56)	θ value	0.365318 (rank : 149)
Query Neighborhood Hits	297	Target Neighborhood Hits	339	Shared Neighborhood Hits	245
SwissProt Accessions	P56916	Gene names	Gscl
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid-like (GSC-2).

GBX2_HUMAN
NC score	0.321244 (rank : 57)	θ value	0.00665767 (rank : 54)
Query Neighborhood Hits	297	Target Neighborhood Hits	322	Shared Neighborhood Hits	241
SwissProt Accessions	P52951, O43833, Q53RX5, Q9Y5Y1	Gene names	GBX2
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2).

MSX2_HUMAN
NC score	0.320900 (rank : 58)	θ value	0.0252991 (rank : 70)
Query Neighborhood Hits	297	Target Neighborhood Hits	337	Shared Neighborhood Hits	240
SwissProt Accessions	P35548	Gene names	MSX2, HOX8
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8).

GBX2_MOUSE
NC score	0.319490 (rank : 59)	θ value	0.0113563 (rank : 61)
Query Neighborhood Hits	297	Target Neighborhood Hits	326	Shared Neighborhood Hits	241
SwissProt Accessions	P48031	Gene names	Gbx2, Mmoxa, Stra7
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2) (Homeobox protein STRA7).

HMX3_MOUSE
NC score	0.319432 (rank : 60)	θ value	0.00665767 (rank : 55)
Query Neighborhood Hits	297	Target Neighborhood Hits	342	Shared Neighborhood Hits	242
SwissProt Accessions	P42581	Gene names	Hmx3, Nkx-5.1, Nkx5-1
Domain Architecture
Description	Homeobox protein HMX3 (Homeobox protein Nkx-5.1).

HXD12_HUMAN
NC score	0.319066 (rank : 61)	θ value	0.0252991 (rank : 69)
Query Neighborhood Hits	297	Target Neighborhood Hits	334	Shared Neighborhood Hits	245
SwissProt Accessions	P35452, Q9NS03	Gene names	HOXD12, HOX4H
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4H).

GBX1_MOUSE
NC score	0.318626 (rank : 62)	θ value	0.0148317 (rank : 64)
Query Neighborhood Hits	297	Target Neighborhood Hits	350	Shared Neighborhood Hits	240
SwissProt Accessions	P82976, Q8CGW5	Gene names	Gbx1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

DLX2_HUMAN
NC score	0.314061 (rank : 63)	θ value	0.0113563 (rank : 59)
Query Neighborhood Hits	297	Target Neighborhood Hits	355	Shared Neighborhood Hits	247
SwissProt Accessions	Q07687	Gene names	DLX2
Domain Architecture
Description	Homeobox protein DLX-2.

HXC12_HUMAN
NC score	0.313859 (rank : 64)	θ value	0.00869519 (rank : 56)
Query Neighborhood Hits	297	Target Neighborhood Hits	313	Shared Neighborhood Hits	238
SwissProt Accessions	P31275, Q9BXJ6	Gene names	HOXC12, HOX3F
Domain Architecture
Description	Homeobox protein Hox-C12 (Hox-3F).

CRX_MOUSE
NC score	0.312585 (rank : 65)	θ value	0.0736092 (rank : 95)
Query Neighborhood Hits	297	Target Neighborhood Hits	359	Shared Neighborhood Hits	248
SwissProt Accessions	O54751	Gene names	Crx
Domain Architecture
Description	Cone-rod homeobox protein.

NKX31_HUMAN
NC score	0.312580 (rank : 66)	θ value	0.0193708 (rank : 67)
Query Neighborhood Hits	297	Target Neighborhood Hits	331	Shared Neighborhood Hits	240
SwissProt Accessions	Q99801, O15465, Q9H2P4, Q9H2P5, Q9H2P6, Q9H2P7, Q9HBG0	Gene names	NKX3-1, NKX3.1, NKX3A
Domain Architecture
Description	Homeobox protein Nkx-3.1.

DLX2_MOUSE
NC score	0.312254 (rank : 67)	θ value	0.0113563 (rank : 60)
Query Neighborhood Hits	297	Target Neighborhood Hits	352	Shared Neighborhood Hits	246
SwissProt Accessions	P40764	Gene names	Dlx2, Tes-1, Tes1
Domain Architecture
Description	Homeobox protein DLX-2 (Homeobox protein TES-1).

CRX_HUMAN
NC score	0.311892 (rank : 68)	θ value	0.0563607 (rank : 86)
Query Neighborhood Hits	297	Target Neighborhood Hits	360	Shared Neighborhood Hits	245
SwissProt Accessions	O43186	Gene names	CRX, CORD2
Domain Architecture
Description	Cone-rod homeobox protein.

HXC12_MOUSE
NC score	0.311796 (rank : 69)	θ value	0.00869519 (rank : 57)
Query Neighborhood Hits	297	Target Neighborhood Hits	316	Shared Neighborhood Hits	238
SwissProt Accessions	Q8K5B8	Gene names	Hoxc12, Hox-3.8, Hoxc-12
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C12 (Hox-3.8).

HMX2_MOUSE
NC score	0.311075 (rank : 70)	θ value	0.0563607 (rank : 90)
Query Neighborhood Hits	297	Target Neighborhood Hits	354	Shared Neighborhood Hits	241
SwissProt Accessions	P43687, Q8R1Q2	Gene names	Hmx2, Nkx-5.2, Nkx5-2
Domain Architecture
Description	Homeobox protein HMX2 (Homeobox protein Nkx-5.2).

TLX2_MOUSE
NC score	0.310904 (rank : 71)	θ value	0.00509761 (rank : 53)
Query Neighborhood Hits	297	Target Neighborhood Hits	336	Shared Neighborhood Hits	236
SwissProt Accessions	Q61663	Gene names	Tlx2, Hox11l1, Tlx1l1
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Homeobox TLX-2) (PMUR10F).

TLX2_HUMAN
NC score	0.310804 (rank : 72)	θ value	0.00509761 (rank : 52)
Query Neighborhood Hits	297	Target Neighborhood Hits	352	Shared Neighborhood Hits	238
SwissProt Accessions	O43763, Q9UQ48	Gene names	TLX2, HOX11L1, NCX
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Neural crest homeobox protein).

DLX5_HUMAN
NC score	0.310430 (rank : 73)	θ value	0.0148317 (rank : 62)
Query Neighborhood Hits	297	Target Neighborhood Hits	405	Shared Neighborhood Hits	244
SwissProt Accessions	P56178, Q9UPL1	Gene names	DLX5
Domain Architecture
Description	Homeobox protein DLX-5.

MSX1_HUMAN
NC score	0.308509 (rank : 74)	θ value	0.0563607 (rank : 91)
Query Neighborhood Hits	297	Target Neighborhood Hits	374	Shared Neighborhood Hits	240
SwissProt Accessions	P28360, Q96NY4	Gene names	MSX1, HOX7
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7).

BSH_MOUSE
NC score	0.308066 (rank : 75)	θ value	0.0736092 (rank : 94)
Query Neighborhood Hits	297	Target Neighborhood Hits	349	Shared Neighborhood Hits	245
SwissProt Accessions	Q810B3	Gene names	Bsx
Domain Architecture	No domain graphic available
Description	Brain-specific homeobox protein homolog.

PRRX2_HUMAN
NC score	0.307376 (rank : 76)	θ value	0.21417 (rank : 136)
Query Neighborhood Hits	297	Target Neighborhood Hits	348	Shared Neighborhood Hits	244
SwissProt Accessions	Q99811, Q9UIB3	Gene names	PRRX2, PMX2, PRX2
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Paired-related homeobox protein 2).

PROP1_MOUSE
NC score	0.306674 (rank : 77)	θ value	4.03905 (rank : 248)
Query Neighborhood Hits	297	Target Neighborhood Hits	361	Shared Neighborhood Hits	246
SwissProt Accessions	P97458	Gene names	Prop1, Prop-1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

DLX3_MOUSE
NC score	0.306397 (rank : 78)	θ value	0.0736092 (rank : 97)
Query Neighborhood Hits	297	Target Neighborhood Hits	367	Shared Neighborhood Hits	247
SwissProt Accessions	Q64205	Gene names	Dlx3
Domain Architecture
Description	Homeobox protein DLX-3.

DLX3_HUMAN
NC score	0.306363 (rank : 79)	θ value	0.0736092 (rank : 96)
Query Neighborhood Hits	297	Target Neighborhood Hits	369	Shared Neighborhood Hits	248
SwissProt Accessions	O60479	Gene names	DLX3
Domain Architecture
Description	Homeobox protein DLX-3.

DLX5_MOUSE
NC score	0.305118 (rank : 80)	θ value	0.0148317 (rank : 63)
Query Neighborhood Hits	297	Target Neighborhood Hits	434	Shared Neighborhood Hits	245
SwissProt Accessions	P70396, O54876, O54877, O54878, Q9JJ45	Gene names	Dlx5
Domain Architecture
Description	Homeobox protein DLX-5.

ARX_MOUSE
NC score	0.305075 (rank : 81)	θ value	0.365318 (rank : 146)
Query Neighborhood Hits	297	Target Neighborhood Hits	398	Shared Neighborhood Hits	246
SwissProt Accessions	O35085, Q9QYT4	Gene names	Arx
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

PRRX2_MOUSE
NC score	0.304547 (rank : 82)	θ value	0.365318 (rank : 150)
Query Neighborhood Hits	297	Target Neighborhood Hits	351	Shared Neighborhood Hits	244
SwissProt Accessions	Q06348, Q61651	Gene names	Prrx2, Prx2, S8
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Homeobox protein S8).

NKX28_MOUSE
NC score	0.303784 (rank : 83)	θ value	0.0252991 (rank : 71)
Query Neighborhood Hits	297	Target Neighborhood Hits	347	Shared Neighborhood Hits	239
SwissProt Accessions	O70584	Gene names	Nkx2-8, Nkx-2.9, Nkx2-9, Nkx2h
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H) (Homeobox protein Nkx-2.9).

EVX1_HUMAN
NC score	0.303533 (rank : 84)	θ value	0.21417 (rank : 123)
Query Neighborhood Hits	297	Target Neighborhood Hits	349	Shared Neighborhood Hits	246
SwissProt Accessions	P49640	Gene names	EVX1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

MEOX1_HUMAN
NC score	0.303069 (rank : 85)	θ value	0.813845 (rank : 178)
Query Neighborhood Hits	297	Target Neighborhood Hits	342	Shared Neighborhood Hits	244
SwissProt Accessions	P50221	Gene names	MEOX1, MOX1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

EVX1_MOUSE
NC score	0.302811 (rank : 86)	θ value	0.21417 (rank : 124)
Query Neighborhood Hits	297	Target Neighborhood Hits	350	Shared Neighborhood Hits	245
SwissProt Accessions	P23683	Gene names	Evx1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

MSX1_MOUSE
NC score	0.302553 (rank : 87)	θ value	0.21417 (rank : 132)
Query Neighborhood Hits	297	Target Neighborhood Hits	322	Shared Neighborhood Hits	238
SwissProt Accessions	P13297	Gene names	Msx1, Hox7, Hox7.1
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7) (Hox- 7.1).

MSX3_MOUSE
NC score	0.302400 (rank : 88)	θ value	0.279714 (rank : 141)
Query Neighborhood Hits	297	Target Neighborhood Hits	330	Shared Neighborhood Hits	242
SwissProt Accessions	P70354, P70246, Q03360, Q80W10	Gene names	Msx3, Msx-3
Domain Architecture
Description	Homeobox protein MSX-3.

NKX31_MOUSE
NC score	0.301599 (rank : 89)	θ value	0.0431538 (rank : 82)
Query Neighborhood Hits	297	Target Neighborhood Hits	379	Shared Neighborhood Hits	242
SwissProt Accessions	P97436, O09087	Gene names	Nkx3-1, Nkx-3.1, Nkx3a
Domain Architecture
Description	Homeobox protein Nkx-3.1.

ARX_HUMAN
NC score	0.301156 (rank : 90)	θ value	0.813845 (rank : 166)
Query Neighborhood Hits	297	Target Neighborhood Hits	401	Shared Neighborhood Hits	245
SwissProt Accessions	Q96QS3	Gene names	ARX
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

NKX25_HUMAN
NC score	0.299162 (rank : 91)	θ value	0.125558 (rank : 117)
Query Neighborhood Hits	297	Target Neighborhood Hits	338	Shared Neighborhood Hits	242
SwissProt Accessions	P52952	Gene names	NKX2-5, CSX, NKX2.5, NKX2E
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

PRRXL_MOUSE
NC score	0.299050 (rank : 92)	θ value	0.47712 (rank : 155)
Query Neighborhood Hits	297	Target Neighborhood Hits	350	Shared Neighborhood Hits	244
SwissProt Accessions	Q8BYH0, Q8K3F8	Gene names	Prrxl1, Drg11
Domain Architecture	No domain graphic available
Description	Paired-related homeobox protein-like 1 (Dorsal root ganglion 11) (Homeobox protein DRG11).

EVX2_MOUSE
NC score	0.298921 (rank : 93)	θ value	0.47712 (rank : 153)
Query Neighborhood Hits	297	Target Neighborhood Hits	327	Shared Neighborhood Hits	243
SwissProt Accessions	P49749	Gene names	Evx2, Evx-2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

MEOX1_MOUSE
NC score	0.298805 (rank : 94)	θ value	0.813845 (rank : 179)
Query Neighborhood Hits	297	Target Neighborhood Hits	345	Shared Neighborhood Hits	244
SwissProt Accessions	P32442	Gene names	Meox1, Mox-1, Mox1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

PRRX1_HUMAN
NC score	0.298465 (rank : 95)	θ value	0.21417 (rank : 134)
Query Neighborhood Hits	297	Target Neighborhood Hits	347	Shared Neighborhood Hits	244
SwissProt Accessions	P54821, O60807	Gene names	PRRX1, PMX1
Domain Architecture
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein PHOX1).

PRRX1_MOUSE
NC score	0.298443 (rank : 96)	θ value	0.21417 (rank : 135)
Query Neighborhood Hits	297	Target Neighborhood Hits	346	Shared Neighborhood Hits	244
SwissProt Accessions	P63013, P43271, Q02810	Gene names	Prrx1, Pmx, Pmx1
Domain Architecture	No domain graphic available
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein mHox) (Homeobox protein K-2).

DLX6_HUMAN
NC score	0.298357 (rank : 97)	θ value	0.0563607 (rank : 87)
Query Neighborhood Hits	297	Target Neighborhood Hits	341	Shared Neighborhood Hits	244
SwissProt Accessions	P56179, Q3ZAR6, Q9UPL2	Gene names	DLX6
Domain Architecture
Description	Homeobox protein DLX-6.

PEPP1_HUMAN
NC score	0.297309 (rank : 98)	θ value	3.0926 (rank : 230)
Query Neighborhood Hits	297	Target Neighborhood Hits	338	Shared Neighborhood Hits	245
SwissProt Accessions	Q8NHV9, O95030, Q3SYE0	Gene names	PEPP1, OTEX
Domain Architecture
Description	Paired-like homeobox protein PEPP-1 (Ovary-, testis- and epididymis- expressed gene protein).

NKX22_MOUSE
NC score	0.297056 (rank : 99)	θ value	0.0193708 (rank : 66)
Query Neighborhood Hits	297	Target Neighborhood Hits	336	Shared Neighborhood Hits	243
SwissProt Accessions	P42586	Gene names	Nkx2-2, Nkx-2.2, Nkx2b
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

DLX1_HUMAN
NC score	0.296851 (rank : 100)	θ value	0.279714 (rank : 137)
Query Neighborhood Hits	297	Target Neighborhood Hits	343	Shared Neighborhood Hits	244
SwissProt Accessions	P56177, Q53ZU4, Q8IYB2	Gene names	DLX1
Domain Architecture
Description	Homeobox protein DLX-1.

DBX1_MOUSE
NC score	0.296839 (rank : 101)	θ value	3.0926 (rank : 221)
Query Neighborhood Hits	297	Target Neighborhood Hits	346	Shared Neighborhood Hits	246
SwissProt Accessions	P52950	Gene names	Dbx1, Dbx
Domain Architecture
Description	Homeobox protein DBX1.

EVX2_HUMAN
NC score	0.296276 (rank : 102)	θ value	0.62314 (rank : 159)
Query Neighborhood Hits	297	Target Neighborhood Hits	325	Shared Neighborhood Hits	242
SwissProt Accessions	Q03828	Gene names	EVX2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

EMX1_HUMAN
NC score	0.295864 (rank : 103)	θ value	0.163984 (rank : 119)
Query Neighborhood Hits	297	Target Neighborhood Hits	336	Shared Neighborhood Hits	242
SwissProt Accessions	Q04741, Q86XB0	Gene names	EMX1
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty spiracles- like protein 1).

DLX1_MOUSE
NC score	0.295235 (rank : 104)	θ value	0.279714 (rank : 138)
Query Neighborhood Hits	297	Target Neighborhood Hits	343	Shared Neighborhood Hits	244
SwissProt Accessions	Q64317	Gene names	Dlx1
Domain Architecture
Description	Homeobox protein DLX-1.

EMX2_MOUSE
NC score	0.294707 (rank : 105)	θ value	0.0961366 (rank : 103)
Query Neighborhood Hits	297	Target Neighborhood Hits	340	Shared Neighborhood Hits	243
SwissProt Accessions	Q04744, Q80UE7	Gene names	Emx2, Emx-2
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

EMX2_HUMAN
NC score	0.294428 (rank : 106)	θ value	0.0961366 (rank : 102)
Query Neighborhood Hits	297	Target Neighborhood Hits	341	Shared Neighborhood Hits	241
SwissProt Accessions	Q04743, Q96NN8, Q9BQF4	Gene names	EMX2
Domain Architecture
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

ALX3_MOUSE
NC score	0.293470 (rank : 107)	θ value	0.0113563 (rank : 58)
Query Neighborhood Hits	297	Target Neighborhood Hits	386	Shared Neighborhood Hits	245
SwissProt Accessions	O70137	Gene names	Alx3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

NKX32_MOUSE
NC score	0.292967 (rank : 108)	θ value	0.0736092 (rank : 99)
Query Neighborhood Hits	297	Target Neighborhood Hits	326	Shared Neighborhood Hits	236
SwissProt Accessions	P97503	Gene names	Bapx1, Nkx-3.2, Nkx3-2, Nkx3b
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

NKX22_HUMAN
NC score	0.292751 (rank : 109)	θ value	0.0330416 (rank : 75)
Query Neighborhood Hits	297	Target Neighborhood Hits	342	Shared Neighborhood Hits	243
SwissProt Accessions	O95096	Gene names	NKX2-2, NKX2.2, NKX2B
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

OTX1_HUMAN
NC score	0.291317 (rank : 110)	θ value	0.21417 (rank : 133)
Query Neighborhood Hits	297	Target Neighborhood Hits	379	Shared Neighborhood Hits	246
SwissProt Accessions	P32242, Q53TG6	Gene names	OTX1
Domain Architecture
Description	Homeobox protein OTX1.

PROP1_HUMAN
NC score	0.290940 (rank : 111)	θ value	5.27518 (rank : 261)
Query Neighborhood Hits	297	Target Neighborhood Hits	354	Shared Neighborhood Hits	245
SwissProt Accessions	O75360	Gene names	PROP1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

OTX1_MOUSE
NC score	0.290504 (rank : 112)	θ value	0.163984 (rank : 121)
Query Neighborhood Hits	297	Target Neighborhood Hits	372	Shared Neighborhood Hits	245
SwissProt Accessions	P80205	Gene names	Otx1, Otx-1
Domain Architecture
Description	Homeobox protein OTX1.

NKX28_HUMAN
NC score	0.290501 (rank : 113)	θ value	0.0330416 (rank : 76)
Query Neighborhood Hits	297	Target Neighborhood Hits	352	Shared Neighborhood Hits	242
SwissProt Accessions	O15522	Gene names	NKX2-8, NKX-2.8, NKX2G, NKX2H
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H).

NKX32_HUMAN
NC score	0.290067 (rank : 114)	θ value	0.0736092 (rank : 98)
Query Neighborhood Hits	297	Target Neighborhood Hits	323	Shared Neighborhood Hits	236
SwissProt Accessions	P78367	Gene names	BAPX1, NKX3B
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

ALX3_HUMAN
NC score	0.289923 (rank : 115)	θ value	0.0431538 (rank : 77)
Query Neighborhood Hits	297	Target Neighborhood Hits	380	Shared Neighborhood Hits	245
SwissProt Accessions	O95076, O95075	Gene names	ALX3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

LBX1_HUMAN
NC score	0.289465 (rank : 116)	θ value	8.99809 (rank : 287)
Query Neighborhood Hits	297	Target Neighborhood Hits	357	Shared Neighborhood Hits	244
SwissProt Accessions	P52954	Gene names	LBX1
Domain Architecture
Description	Transcription factor LBX1.

NKX23_HUMAN
NC score	0.289252 (rank : 117)	θ value	0.279714 (rank : 142)
Query Neighborhood Hits	297	Target Neighborhood Hits	346	Shared Neighborhood Hits	246
SwissProt Accessions	Q8TAU0, Q9NYS6	Gene names	NKX2-3, NKX23, NKX2C
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NKX-2.3) (Homeobox protein NK-2 homolog C).

NKX25_MOUSE
NC score	0.289146 (rank : 118)	θ value	0.279714 (rank : 144)
Query Neighborhood Hits	297	Target Neighborhood Hits	347	Shared Neighborhood Hits	243
SwissProt Accessions	P42582, P97335	Gene names	Nkx2-5, Csx, Nkx-2.5, Nkx2e
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

NKX26_MOUSE
NC score	0.288924 (rank : 119)	θ value	0.279714 (rank : 145)
Query Neighborhood Hits	297	Target Neighborhood Hits	343	Shared Neighborhood Hits	243
SwissProt Accessions	P43688	Gene names	Nkx2-6, Nkx-2.6, Nkx2f
Domain Architecture
Description	Homeobox protein Nkx-2.6 (Homeobox protein NK-2 homolog F).

NKX12_MOUSE
NC score	0.288802 (rank : 120)	θ value	0.0330416 (rank : 74)
Query Neighborhood Hits	297	Target Neighborhood Hits	332	Shared Neighborhood Hits	235
SwissProt Accessions	P42580, Q9JHF2, Q9JKW5, Q9JKW6, Q9JKW9, Q9JKX0, Q9JKX1	Gene names	Nkx1-2, Nkx1.1, Sax1
Domain Architecture
Description	NK1 transcription factor-related protein 2 (Homeobox protein SAX-1) (NKX-1.1).

PAX4_HUMAN
NC score	0.288799 (rank : 121)	θ value	0.0563607 (rank : 92)
Query Neighborhood Hits	297	Target Neighborhood Hits	367	Shared Neighborhood Hits	246
SwissProt Accessions	O43316, O95161, Q6B0H0	Gene names	PAX4
Domain Architecture
Description	Paired box protein Pax-4.

PAX4_MOUSE
NC score	0.288778 (rank : 122)	θ value	0.125558 (rank : 118)
Query Neighborhood Hits	297	Target Neighborhood Hits	370	Shared Neighborhood Hits	246
SwissProt Accessions	P32115, P97341, Q9QUR1, Q9R091	Gene names	Pax4, Pax-4
Domain Architecture
Description	Paired box protein Pax-4.

MEOX2_HUMAN
NC score	0.288520 (rank : 123)	θ value	1.06291 (rank : 189)
Query Neighborhood Hits	297	Target Neighborhood Hits	340	Shared Neighborhood Hits	242
SwissProt Accessions	P50222, O75263, Q9UPL6	Gene names	MEOX2, GAX, MOX2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth arrest-specific homeobox).

MEOX2_MOUSE
NC score	0.287925 (rank : 124)	θ value	1.06291 (rank : 190)
Query Neighborhood Hits	297	Target Neighborhood Hits	341	Shared Neighborhood Hits	242
SwissProt Accessions	P32443, Q544T6	Gene names	Meox2, Gax, Mox-2, Mox2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2).

LBX1_MOUSE
NC score	0.287632 (rank : 125)	θ value	8.99809 (rank : 288)
Query Neighborhood Hits	297	Target Neighborhood Hits	349	Shared Neighborhood Hits	246
SwissProt Accessions	P52955	Gene names	Lbx1, Lbx1h
Domain Architecture
Description	Transcription factor LBX1.

NKX23_MOUSE
NC score	0.286626 (rank : 126)	θ value	0.279714 (rank : 143)
Query Neighborhood Hits	297	Target Neighborhood Hits	340	Shared Neighborhood Hits	247
SwissProt Accessions	P97334, Q9QZ60, Q9WV67	Gene names	Nkx2-3, Nkx-2.3, Nkx2c
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NK-2 homolog C) (Nkx2-C) (Homeobox protein NK-2 homolog 3).

BARH2_HUMAN
NC score	0.286281 (rank : 127)	θ value	0.0431538 (rank : 79)
Query Neighborhood Hits	297	Target Neighborhood Hits	419	Shared Neighborhood Hits	242
SwissProt Accessions	Q9NY43, Q7Z4N7	Gene names	BARHL2
Domain Architecture
Description	BarH-like 2 homeobox protein.

ALX4_HUMAN
NC score	0.285573 (rank : 128)	θ value	0.0563607 (rank : 83)
Query Neighborhood Hits	297	Target Neighborhood Hits	394	Shared Neighborhood Hits	246
SwissProt Accessions	Q9H161, Q96JN7, Q9H198, Q9HAY9	Gene names	ALX4, KIAA1788
Domain Architecture
Description	Homeobox protein aristaless-like 4.

HME2_HUMAN
NC score	0.284153 (rank : 129)	θ value	3.0926 (rank : 224)
Query Neighborhood Hits	297	Target Neighborhood Hits	355	Shared Neighborhood Hits	241
SwissProt Accessions	P19622	Gene names	EN2
Domain Architecture
Description	Homeobox protein engrailed-2 (Hu-En-2).

OTP_MOUSE
NC score	0.283857 (rank : 130)	θ value	1.06291 (rank : 191)
Query Neighborhood Hits	297	Target Neighborhood Hits	387	Shared Neighborhood Hits	245
SwissProt Accessions	O09113	Gene names	Otp
Domain Architecture
Description	Homeobox protein orthopedia.

BARH1_MOUSE
NC score	0.283681 (rank : 131)	θ value	0.0563607 (rank : 85)
Query Neighborhood Hits	297	Target Neighborhood Hits	350	Shared Neighborhood Hits	243
SwissProt Accessions	P63157, Q9JK26	Gene names	Barhl1, Bhx1, Mbh2
Domain Architecture	No domain graphic available
Description	BarH-like 1 homeobox protein (Bar-class homeodomain protein MBH2) (BarH-related homeobox protein 1).

TLX3_HUMAN
NC score	0.282890 (rank : 132)	θ value	0.0736092 (rank : 100)
Query Neighborhood Hits	297	Target Neighborhood Hits	403	Shared Neighborhood Hits	239
SwissProt Accessions	O43711, Q96AD3	Gene names	TLX3, HOX11L2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox protein Hox-11L2).

BARH2_MOUSE
NC score	0.282815 (rank : 133)	θ value	0.0431538 (rank : 80)
Query Neighborhood Hits	297	Target Neighborhood Hits	397	Shared Neighborhood Hits	243
SwissProt Accessions	Q8VIB5, Q66L43	Gene names	Barhl2, Barh1, Mbh1
Domain Architecture	No domain graphic available
Description	BarH-like 2 homeobox protein (Bar-class homeodomain protein MBH1) (Homeobox protein B-H1).

HME2_MOUSE
NC score	0.282394 (rank : 134)	θ value	3.0926 (rank : 225)
Query Neighborhood Hits	297	Target Neighborhood Hits	352	Shared Neighborhood Hits	241
SwissProt Accessions	P09066	Gene names	En2, En-2
Domain Architecture
Description	Homeobox protein engrailed-2 (Mo-En-2).

TLX3_MOUSE
NC score	0.282144 (rank : 135)	θ value	0.0736092 (rank : 101)
Query Neighborhood Hits	297	Target Neighborhood Hits	346	Shared Neighborhood Hits	240
SwissProt Accessions	O55144	Gene names	Tlx3, Hox11l2, Rnx, Tlx1l2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox TLX-3) (Homeobox protein Hox-11L2) (Respiratory neuron homeobox protein).

BARH1_HUMAN
NC score	0.282112 (rank : 136)	θ value	0.0563607 (rank : 84)
Query Neighborhood Hits	297	Target Neighborhood Hits	373	Shared Neighborhood Hits	243
SwissProt Accessions	Q9BZE3, Q9NY88	Gene names	BARHL1
Domain Architecture
Description	BarH-like 1 homeobox protein.

NKX24_HUMAN
NC score	0.281709 (rank : 137)	θ value	0.62314 (rank : 163)
Query Neighborhood Hits	297	Target Neighborhood Hits	366	Shared Neighborhood Hits	245
SwissProt Accessions	Q9H2Z4	Gene names	NKX2-4, NKX2D
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

RX_HUMAN
NC score	0.281703 (rank : 138)	θ value	0.62314 (rank : 164)
Query Neighborhood Hits	297	Target Neighborhood Hits	423	Shared Neighborhood Hits	246
SwissProt Accessions	Q9Y2V3	Gene names	RAX, RX
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

VSX1_HUMAN
NC score	0.280003 (rank : 139)	θ value	1.38821 (rank : 202)
Query Neighborhood Hits	297	Target Neighborhood Hits	344	Shared Neighborhood Hits	240
SwissProt Accessions	Q9NZR4, Q5TF40, Q5TF41, Q9HCU3, Q9NU27	Gene names	VSX1, RINX
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

ALX4_MOUSE
NC score	0.279217 (rank : 140)	θ value	0.125558 (rank : 107)
Query Neighborhood Hits	297	Target Neighborhood Hits	369	Shared Neighborhood Hits	244
SwissProt Accessions	O35137	Gene names	Alx4
Domain Architecture
Description	Homeobox protein aristaless-like 4 (ALX-4).

TLX1_MOUSE
NC score	0.279019 (rank : 141)	θ value	0.0961366 (rank : 105)
Query Neighborhood Hits	297	Target Neighborhood Hits	347	Shared Neighborhood Hits	239
SwissProt Accessions	P43345	Gene names	Tlx1, Hox11, Tlx-1
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (Homeobox TLX-1).

LMX1B_HUMAN
NC score	0.278972 (rank : 142)	θ value	0.125558 (rank : 115)
Query Neighborhood Hits	297	Target Neighborhood Hits	404	Shared Neighborhood Hits	230
SwissProt Accessions	O60663, O75463	Gene names	LMX1B
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

OTX2_MOUSE
NC score	0.278971 (rank : 143)	θ value	0.813845 (rank : 182)
Query Neighborhood Hits	297	Target Neighborhood Hits	345	Shared Neighborhood Hits	244
SwissProt Accessions	P80206	Gene names	Otx2, Otx-2
Domain Architecture
Description	Homeobox protein OTX2.

OTX2_HUMAN
NC score	0.278802 (rank : 144)	θ value	0.813845 (rank : 181)
Query Neighborhood Hits	297	Target Neighborhood Hits	341	Shared Neighborhood Hits	244
SwissProt Accessions	P32243, Q6GTV3, Q9HAW3, Q9P2R1	Gene names	OTX2
Domain Architecture
Description	Homeobox protein OTX2.

LMX1B_MOUSE
NC score	0.278618 (rank : 145)	θ value	0.125558 (rank : 116)
Query Neighborhood Hits	297	Target Neighborhood Hits	394	Shared Neighborhood Hits	230
SwissProt Accessions	O88609	Gene names	Lmx1b
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

DLX4_MOUSE
NC score	0.278552 (rank : 146)	θ value	0.365318 (rank : 148)
Query Neighborhood Hits	297	Target Neighborhood Hits	352	Shared Neighborhood Hits	242
SwissProt Accessions	P70436, Q3UM51, Q8R4I3	Gene names	Dlx4, Dlx7
Domain Architecture
Description	Homeobox protein DLX-4 (DLX-7).

TLX1_HUMAN
NC score	0.278512 (rank : 147)	θ value	0.0961366 (rank : 104)
Query Neighborhood Hits	297	Target Neighborhood Hits	347	Shared Neighborhood Hits	238
SwissProt Accessions	P31314, O75699, Q9HCA0	Gene names	TLX1, HOX11, TCL3
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (TCL-3 proto-oncogene).

SHOX2_HUMAN
NC score	0.276421 (rank : 148)	θ value	3.0926 (rank : 232)
Query Neighborhood Hits	297	Target Neighborhood Hits	353	Shared Neighborhood Hits	247
SwissProt Accessions	O60902, O60465, O60467, O60903	Gene names	SHOX2, OG12X, SHOT
Domain Architecture
Description	Short stature homeobox protein 2 (Paired-related homeobox protein SHOT) (Homeobox protein Og12X).

NKX24_MOUSE
NC score	0.276332 (rank : 149)	θ value	0.813845 (rank : 180)
Query Neighborhood Hits	297	Target Neighborhood Hits	356	Shared Neighborhood Hits	247
SwissProt Accessions	Q9EQM3, Q9EQM4	Gene names	Nkx2-4, Nkx2d
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

VSX1_MOUSE
NC score	0.276312 (rank : 150)	θ value	1.06291 (rank : 195)
Query Neighborhood Hits	297	Target Neighborhood Hits	356	Shared Neighborhood Hits	241
SwissProt Accessions	Q91V10	Gene names	Vsx1, Rinx
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

RX_MOUSE
NC score	0.276274 (rank : 151)	θ value	1.38821 (rank : 201)
Query Neighborhood Hits	297	Target Neighborhood Hits	429	Shared Neighborhood Hits	246
SwissProt Accessions	O35602, O08748	Gene names	Rax, Rx
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

HME1_MOUSE
NC score	0.275881 (rank : 152)	θ value	6.88961 (rank : 269)
Query Neighborhood Hits	297	Target Neighborhood Hits	397	Shared Neighborhood Hits	236
SwissProt Accessions	P09065	Gene names	En1, En-1
Domain Architecture
Description	Homeobox protein engrailed-1 (Mo-En-1).

BARX2_HUMAN
NC score	0.275846 (rank : 153)	θ value	0.0330416 (rank : 72)
Query Neighborhood Hits	297	Target Neighborhood Hits	387	Shared Neighborhood Hits	243
SwissProt Accessions	Q9UMQ3, O43518	Gene names	BARX2
Domain Architecture
Description	Homeobox protein BarH-like 2.

HME1_HUMAN
NC score	0.275771 (rank : 154)	θ value	6.88961 (rank : 268)
Query Neighborhood Hits	297	Target Neighborhood Hits	384	Shared Neighborhood Hits	236
SwissProt Accessions	Q05925	Gene names	EN1
Domain Architecture
Description	Homeobox protein engrailed-1 (Hu-En-1).

HXC11_HUMAN
NC score	0.275203 (rank : 155)	θ value	0.0431538 (rank : 81)
Query Neighborhood Hits	297	Target Neighborhood Hits	349	Shared Neighborhood Hits	242
SwissProt Accessions	O43248, Q96DH2	Gene names	HOXC11
Domain Architecture
Description	Homeobox protein Hox-C11.

BARX2_MOUSE
NC score	0.274758 (rank : 156)	θ value	0.0330416 (rank : 73)
Query Neighborhood Hits	297	Target Neighborhood Hits	335	Shared Neighborhood Hits	242
SwissProt Accessions	O08686	Gene names	Barx2
Domain Architecture
Description	Homeobox protein BarH-like 2.

LMX1A_HUMAN
NC score	0.274376 (rank : 157)	θ value	0.125558 (rank : 113)
Query Neighborhood Hits	297	Target Neighborhood Hits	406	Shared Neighborhood Hits	235
SwissProt Accessions	Q8TE12, Q8TE11	Gene names	LMX1A
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

SHOX2_MOUSE
NC score	0.274124 (rank : 158)	θ value	3.0926 (rank : 233)
Query Neighborhood Hits	297	Target Neighborhood Hits	348	Shared Neighborhood Hits	247
SwissProt Accessions	P70390, P70369	Gene names	Shox2, Og12x, Prx3
Domain Architecture
Description	Short stature homeobox protein 2 (Homeobox protein Og12X) (OG-12) (Paired family homeodomain protein Prx3).

LMX1A_MOUSE
NC score	0.273086 (rank : 159)	θ value	0.125558 (rank : 114)
Query Neighborhood Hits	297	Target Neighborhood Hits	405	Shared Neighborhood Hits	236
SwissProt Accessions	Q9JKU8	Gene names	Lmx1a
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

SHOX_HUMAN
NC score	0.273028 (rank : 160)	θ value	3.0926 (rank : 234)
Query Neighborhood Hits	297	Target Neighborhood Hits	363	Shared Neighborhood Hits	248
SwissProt Accessions	O15266, O00412, O00413, O15267	Gene names	SHOX, PHOG
Domain Architecture
Description	Short stature homeobox protein (Short stature homeobox-containing protein) (Pseudoautosomal homeobox-containing osteogenic protein).

HLXB9_MOUSE
NC score	0.272797 (rank : 161)	θ value	0.813845 (rank : 172)
Query Neighborhood Hits	297	Target Neighborhood Hits	354	Shared Neighborhood Hits	243
SwissProt Accessions	Q9QZW9	Gene names	Hlxb9
Domain Architecture
Description	Homeobox protein HB9.

HLXB9_HUMAN
NC score	0.272585 (rank : 162)	θ value	1.06291 (rank : 187)
Query Neighborhood Hits	297	Target Neighborhood Hits	336	Shared Neighborhood Hits	241
SwissProt Accessions	P50219, Q9Y648	Gene names	HLXB9
Domain Architecture
Description	Homeobox protein HB9.

LHX8_MOUSE
NC score	0.272172 (rank : 163)	θ value	θ > 10 (rank : 355)
Query Neighborhood Hits	297	Target Neighborhood Hits	406	Shared Neighborhood Hits	235
SwissProt Accessions	O35652, O70163, O88707	Gene names	Lhx8, Lhx7
Domain Architecture
Description	LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3).

BARX1_MOUSE
NC score	0.270578 (rank : 164)	θ value	1.81305 (rank : 204)
Query Neighborhood Hits	297	Target Neighborhood Hits	324	Shared Neighborhood Hits	239
SwissProt Accessions	Q9ER42, O09066, P70159, Q9ERV2	Gene names	Barx1
Domain Architecture
Description	Homeobox protein BarH-like 1.

BARX1_HUMAN
NC score	0.270177 (rank : 165)	θ value	1.81305 (rank : 203)
Query Neighborhood Hits	297	Target Neighborhood Hits	326	Shared Neighborhood Hits	239
SwissProt Accessions	Q9HBU1	Gene names	BARX1
Domain Architecture
Description	Homeobox protein BarH-like 1.

CART1_HUMAN
NC score	0.269939 (rank : 166)	θ value	0.62314 (rank : 156)
Query Neighborhood Hits	297	Target Neighborhood Hits	348	Shared Neighborhood Hits	242
SwissProt Accessions	Q15699, Q546C8, Q96FH4	Gene names	CART1
Domain Architecture
Description	Cartilage homeoprotein 1 (CART-1).

DUX4_HUMAN
NC score	0.266968 (rank : 167)	θ value	0.813845 (rank : 170)
Query Neighborhood Hits	297	Target Neighborhood Hits	403	Shared Neighborhood Hits	242
SwissProt Accessions	Q9UBX2	Gene names	DUX4, DUX10
Domain Architecture	No domain graphic available
Description	Double homeobox protein 4 (Double homeobox protein 10) (Double homeobox protein 4/10).

PITX3_MOUSE
NC score	0.265187 (rank : 168)	θ value	θ > 10 (rank : 377)
Query Neighborhood Hits	297	Target Neighborhood Hits	380	Shared Neighborhood Hits	243
SwissProt Accessions	O35160	Gene names	Pitx3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

CART1_MOUSE
NC score	0.264962 (rank : 169)	θ value	1.06291 (rank : 185)
Query Neighborhood Hits	297	Target Neighborhood Hits	344	Shared Neighborhood Hits	242
SwissProt Accessions	Q8C8B0, Q8C370	Gene names	Cart1
Domain Architecture	No domain graphic available
Description	Cartilage homeoprotein 1 (CART-1).

PITX3_HUMAN
NC score	0.264718 (rank : 170)	θ value	θ > 10 (rank : 376)
Query Neighborhood Hits	297	Target Neighborhood Hits	366	Shared Neighborhood Hits	242
SwissProt Accessions	O75364	Gene names	PITX3, PTX3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

HXD11_HUMAN
NC score	0.263769 (rank : 171)	θ value	0.813845 (rank : 175)
Query Neighborhood Hits	297	Target Neighborhood Hits	353	Shared Neighborhood Hits	237
SwissProt Accessions	P31277, Q9NS02	Gene names	HOXD11, HOX4F
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4F).

TITF1_MOUSE
NC score	0.262085 (rank : 172)	θ value	2.36792 (rank : 219)
Query Neighborhood Hits	297	Target Neighborhood Hits	335	Shared Neighborhood Hits	245
SwissProt Accessions	P50220	Gene names	Titf1, Nkx-2.1, Nkx2-1, Ttf1
Domain Architecture	No domain graphic available
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1).

HXB1_MOUSE
NC score	0.261885 (rank : 173)	θ value	0.62314 (rank : 160)
Query Neighborhood Hits	297	Target Neighborhood Hits	341	Shared Neighborhood Hits	239
SwissProt Accessions	P17919, Q3ZAY6, Q9CYH3	Gene names	Hoxb1, Hox-2.9, Hoxb-1
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2.9).

HXB1_HUMAN
NC score	0.261241 (rank : 174)	θ value	1.06291 (rank : 188)
Query Neighborhood Hits	297	Target Neighborhood Hits	356	Shared Neighborhood Hits	239
SwissProt Accessions	P14653	Gene names	HOXB1, HOX2I
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2I).

TITF1_HUMAN
NC score	0.260838 (rank : 175)	θ value	2.36792 (rank : 218)
Query Neighborhood Hits	297	Target Neighborhood Hits	332	Shared Neighborhood Hits	244
SwissProt Accessions	P43699, O14954, O14955, Q9BRJ8	Gene names	TITF1, NKX2-1, NKX2A, TTF1
Domain Architecture
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1) (Homeobox protein NK-2 homolog A).

HXA1_MOUSE
NC score	0.260617 (rank : 176)	θ value	0.279714 (rank : 139)
Query Neighborhood Hits	297	Target Neighborhood Hits	341	Shared Neighborhood Hits	239
SwissProt Accessions	P09022, P15463	Gene names	Hoxa1, Era-1, Hox-1.6, Hoxa-1
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399).

DLX4_HUMAN
NC score	0.260570 (rank : 177)	θ value	6.88961 (rank : 265)
Query Neighborhood Hits	297	Target Neighborhood Hits	350	Shared Neighborhood Hits	240
SwissProt Accessions	Q92988, O60480, Q13265, Q6PJK0, Q9HBE0	Gene names	DLX4, BP1, DLX7, DLX8
Domain Architecture	No domain graphic available
Description	Homeobox protein DLX-4 (DLX-7) (DLX-8) (Beta protein 1).

HXB2_MOUSE
NC score	0.260556 (rank : 178)	θ value	0.279714 (rank : 140)
Query Neighborhood Hits	297	Target Neighborhood Hits	350	Shared Neighborhood Hits	234
SwissProt Accessions	P0C1T1	Gene names	Hoxb2, Hox-2.8
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-B2 (Hox-2.8).

CDX4_HUMAN
NC score	0.260469 (rank : 179)	θ value	0.813845 (rank : 169)
Query Neighborhood Hits	297	Target Neighborhood Hits	366	Shared Neighborhood Hits	246
SwissProt Accessions	O14627, Q5JS20	Gene names	CDX4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

LHX6_MOUSE
NC score	0.258799 (rank : 180)	θ value	0.000270298 (rank : 40)
Query Neighborhood Hits	297	Target Neighborhood Hits	399	Shared Neighborhood Hits	229
SwissProt Accessions	O88706	Gene names	Lhx6
Domain Architecture
Description	LIM/homeobox protein Lhx6.

HXD11_MOUSE
NC score	0.257744 (rank : 181)	θ value	1.81305 (rank : 208)
Query Neighborhood Hits	297	Target Neighborhood Hits	376	Shared Neighborhood Hits	237
SwissProt Accessions	P23813	Gene names	Hoxd11, Hox-4.6, Hoxd-11
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5).

PITX2_MOUSE
NC score	0.257557 (rank : 182)	θ value	8.99809 (rank : 294)
Query Neighborhood Hits	297	Target Neighborhood Hits	383	Shared Neighborhood Hits	243
SwissProt Accessions	P97474, O08646, O70336, P97933, Q9JLA0, Q9QXB8, Q9R1V9, Q9Z141	Gene names	Pitx2, Arp1, Brx1, Otlx2, Ptx2, Rgs
Domain Architecture
Description	Pituitary homeobox 2 (Orthodenticle-like homeobox 2) (Solurshin) (ALL1-responsive protein ARP1) (BRX1 homeoprotein) (Paired-like homeodomain transcription factor Munc 30).

LHX61_HUMAN
NC score	0.257222 (rank : 183)	θ value	0.000461057 (rank : 43)
Query Neighborhood Hits	297	Target Neighborhood Hits	412	Shared Neighborhood Hits	229
SwissProt Accessions	Q9UPM6, Q5T7S8, Q9NTK3, Q9UPM5	Gene names	LHX6, LHX6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1 (Lhx6).

PITX2_HUMAN
NC score	0.256886 (rank : 184)	θ value	8.99809 (rank : 293)
Query Neighborhood Hits	297	Target Neighborhood Hits	381	Shared Neighborhood Hits	243
SwissProt Accessions	Q99697, O60578, O60579, O60580, Q9BY17	Gene names	PITX2, ARP1, RGS, RIEG, RIEG1
Domain Architecture
Description	Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription factor) (Solurshin) (ALL1-responsive protein ARP1).

HXA11_MOUSE
NC score	0.256871 (rank : 185)	θ value	1.38821 (rank : 198)
Query Neighborhood Hits	297	Target Neighborhood Hits	327	Shared Neighborhood Hits	236
SwissProt Accessions	P31311, Q3V026	Gene names	Hoxa11, Hox-1.9, Hoxa-11
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1.9).

HXA1_HUMAN
NC score	0.256564 (rank : 186)	θ value	0.21417 (rank : 126)
Query Neighborhood Hits	297	Target Neighborhood Hits	334	Shared Neighborhood Hits	238
SwissProt Accessions	P49639, O43363	Gene names	HOXA1, HOX1F
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1F).

HXB2_HUMAN
NC score	0.255884 (rank : 187)	θ value	0.21417 (rank : 129)
Query Neighborhood Hits	297	Target Neighborhood Hits	367	Shared Neighborhood Hits	234
SwissProt Accessions	P14652, P10913, P17485	Gene names	HOXB2, HOX2H
Domain Architecture
Description	Homeobox protein Hox-B2 (Hox-2H) (Hox-2.8) (K8).

HXA11_HUMAN
NC score	0.254039 (rank : 188)	θ value	3.0926 (rank : 227)
Query Neighborhood Hits	297	Target Neighborhood Hits	334	Shared Neighborhood Hits	237
SwissProt Accessions	P31270	Gene names	HOXA11, HOX1I
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1I).

NKX61_HUMAN
NC score	0.253876 (rank : 189)	θ value	4.03905 (rank : 245)
Query Neighborhood Hits	297	Target Neighborhood Hits	431	Shared Neighborhood Hits	238
SwissProt Accessions	P78426	Gene names	NKX6-1, NKX6A
Domain Architecture
Description	Homeobox protein Nkx-6.1.

NKX61_MOUSE
NC score	0.253574 (rank : 190)	θ value	4.03905 (rank : 246)
Query Neighborhood Hits	297	Target Neighborhood Hits	439	Shared Neighborhood Hits	237
SwissProt Accessions	Q99MA9, Q9ERQ7	Gene names	Nkx6-1, Nkx6.1, Nkx6a
Domain Architecture
Description	Homeobox protein Nkx-6.1.

HXC4_MOUSE
NC score	0.253559 (rank : 191)	θ value	1.81305 (rank : 207)
Query Neighborhood Hits	297	Target Neighborhood Hits	365	Shared Neighborhood Hits	240
SwissProt Accessions	Q08624	Gene names	Hoxc4, Hox-3.5, Hoxc-4
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3.5).

CHX10_MOUSE
NC score	0.253506 (rank : 192)	θ value	5.27518 (rank : 252)
Query Neighborhood Hits	297	Target Neighborhood Hits	340	Shared Neighborhood Hits	239
SwissProt Accessions	Q61412	Gene names	Chx10, Vsx2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

CHX10_HUMAN
NC score	0.253398 (rank : 193)	θ value	5.27518 (rank : 251)
Query Neighborhood Hits	297	Target Neighborhood Hits	340	Shared Neighborhood Hits	239
SwissProt Accessions	P58304	Gene names	CHX10, VSX2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

PITX1_MOUSE
NC score	0.253108 (rank : 194)	θ value	8.99809 (rank : 292)
Query Neighborhood Hits	297	Target Neighborhood Hits	362	Shared Neighborhood Hits	246
SwissProt Accessions	P70314, O54742, P70427	Gene names	Pitx1, Bft, Potx, Ptx1
Domain Architecture
Description	Pituitary homeobox 1 (Homeobox protein P-OTX) (Pituitary OTX-related factor) (Hindlimb expressed homeobox protein backfoot) (Ptx1).

HXA2_MOUSE
NC score	0.252451 (rank : 195)	θ value	0.21417 (rank : 128)
Query Neighborhood Hits	297	Target Neighborhood Hits	338	Shared Neighborhood Hits	238
SwissProt Accessions	P31245, Q149U3, Q920T8	Gene names	Hoxa2, Hox-1.11, Hoxa-2
Domain Architecture
Description	Homeobox protein Hox-A2 (Hox-1.11) (Hox1.11).

PHX2A_MOUSE
NC score	0.251229 (rank : 196)	θ value	θ > 10 (rank : 373)
Query Neighborhood Hits	297	Target Neighborhood Hits	338	Shared Neighborhood Hits	238
SwissProt Accessions	Q62066	Gene names	Phox2a, Arix, Phox2, Pmx2, Pmx2a
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (PHOX2A homeodomain protein) (Aristaless homeobox protein homolog).

CDX4_MOUSE
NC score	0.251099 (rank : 197)	θ value	1.38821 (rank : 197)
Query Neighborhood Hits	297	Target Neighborhood Hits	378	Shared Neighborhood Hits	244
SwissProt Accessions	Q07424	Gene names	Cdx4, Cdx-4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

ISL1_HUMAN
NC score	0.250310 (rank : 198)	θ value	0.21417 (rank : 130)
Query Neighborhood Hits	297	Target Neighborhood Hits	421	Shared Neighborhood Hits	237
SwissProt Accessions	P61371, P20663, P47894	Gene names	ISL1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

ISL1_MOUSE
NC score	0.250310 (rank : 199)	θ value	0.21417 (rank : 131)
Query Neighborhood Hits	297	Target Neighborhood Hits	421	Shared Neighborhood Hits	237
SwissProt Accessions	P61372, P20663, P47894, Q812D8	Gene names	Isl1
Domain Architecture
Description	Insulin gene enhancer protein ISL-1 (Islet-1).

PHX2A_HUMAN
NC score	0.250140 (rank : 200)	θ value	θ > 10 (rank : 372)
Query Neighborhood Hits	297	Target Neighborhood Hits	345	Shared Neighborhood Hits	237
SwissProt Accessions	O14813, Q8IVZ2	Gene names	PHOX2A, ARIX, PMX2A
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (Aristaless homeobox protein homolog) (ARIX1 homeodomain protein).

PITX1_HUMAN
NC score	0.249845 (rank : 201)	θ value	8.99809 (rank : 291)
Query Neighborhood Hits	297	Target Neighborhood Hits	353	Shared Neighborhood Hits	244
SwissProt Accessions	P78337, O14677, O60425, Q9BTI5	Gene names	PITX1, BFT, PTX1
Domain Architecture
Description	Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot).

HXA2_HUMAN
NC score	0.249172 (rank : 202)	θ value	0.21417 (rank : 127)
Query Neighborhood Hits	297	Target Neighborhood Hits	370	Shared Neighborhood Hits	238
SwissProt Accessions	O43364	Gene names	HOXA2
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A2.

LHX9_MOUSE
NC score	0.247930 (rank : 203)	θ value	θ > 10 (rank : 357)
Query Neighborhood Hits	297	Target Neighborhood Hits	445	Shared Neighborhood Hits	236
SwissProt Accessions	Q9WUH2, Q9QYQ5, Q9QYQ6, Q9QZ00, Q9WU44	Gene names	Lhx9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

LHX9_HUMAN
NC score	0.247916 (rank : 204)	θ value	θ > 10 (rank : 356)
Query Neighborhood Hits	297	Target Neighborhood Hits	444	Shared Neighborhood Hits	236
SwissProt Accessions	Q9NQ69, Q5VUE3, Q9BYU6, Q9NQ70	Gene names	LHX9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

PHX2B_HUMAN
NC score	0.247499 (rank : 205)	θ value	θ > 10 (rank : 374)
Query Neighborhood Hits	297	Target Neighborhood Hits	407	Shared Neighborhood Hits	236
SwissProt Accessions	Q99453, Q6PJD9	Gene names	PHOX2B, PMX2B
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

PHX2B_MOUSE
NC score	0.247499 (rank : 206)	θ value	θ > 10 (rank : 375)
Query Neighborhood Hits	297	Target Neighborhood Hits	407	Shared Neighborhood Hits	236
SwissProt Accessions	O35690	Gene names	Phox2b, Pmx2b
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

DUX1_HUMAN
NC score	0.247487 (rank : 207)	θ value	4.03905 (rank : 238)
Query Neighborhood Hits	297	Target Neighborhood Hits	330	Shared Neighborhood Hits	243
SwissProt Accessions	O43812	Gene names	DUX1
Domain Architecture	No domain graphic available
Description	Double homeobox protein 1.

LHX2_HUMAN
NC score	0.247153 (rank : 208)	θ value	θ > 10 (rank : 353)
Query Neighborhood Hits	297	Target Neighborhood Hits	432	Shared Neighborhood Hits	236
SwissProt Accessions	P50458, O95860, Q8N1Z3	Gene names	LHX2, LH2
Domain Architecture
Description	LIM/homeobox protein Lhx2 (Homeobox protein LH-2).

LHX2_MOUSE
NC score	0.246835 (rank : 209)	θ value	θ > 10 (rank : 354)
Query Neighborhood Hits	297	Target Neighborhood Hits	431	Shared Neighborhood Hits	236
SwissProt Accessions	Q9Z0S2	Gene names	Lhx2
Domain Architecture
Description	LIM/homeobox protein Lhx2.

LHX61_MOUSE
NC score	0.246368 (rank : 210)	θ value	0.00134147 (rank : 47)
Query Neighborhood Hits	297	Target Neighborhood Hits	396	Shared Neighborhood Hits	218
SwissProt Accessions	Q9R1R0, Q9R1R1	Gene names	Lhx6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1.

PAX6_HUMAN
NC score	0.245744 (rank : 211)	θ value	2.36792 (rank : 213)
Query Neighborhood Hits	297	Target Neighborhood Hits	383	Shared Neighborhood Hits	245
SwissProt Accessions	P26367, Q6N006, Q99413	Gene names	PAX6, AN2
Domain Architecture
Description	Paired box protein Pax-6 (Oculorhombin) (Aniridia type II protein).

PAX6_MOUSE
NC score	0.245744 (rank : 212)	θ value	2.36792 (rank : 214)
Query Neighborhood Hits	297	Target Neighborhood Hits	383	Shared Neighborhood Hits	245
SwissProt Accessions	P63015, P32117, P70601, Q62222, Q64037, Q8CEI5, Q8VDB5, Q921Q8	Gene names	Pax6, Pax-6, Sey
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-6 (Oculorhombin).

DUX5_HUMAN
NC score	0.245723 (rank : 213)	θ value	4.03905 (rank : 239)
Query Neighborhood Hits	297	Target Neighborhood Hits	330	Shared Neighborhood Hits	243
SwissProt Accessions	Q96PT3	Gene names	DUX5
Domain Architecture	No domain graphic available
Description	Double homeobox protein 5.

HXB4_HUMAN
NC score	0.244669 (rank : 214)	θ value	0.813845 (rank : 173)
Query Neighborhood Hits	297	Target Neighborhood Hits	376	Shared Neighborhood Hits	243
SwissProt Accessions	P17483, Q9NTA0	Gene names	HOXB4, HOX2F
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2F) (Hox-2.6).

ISL2_MOUSE
NC score	0.244161 (rank : 215)	θ value	0.125558 (rank : 112)
Query Neighborhood Hits	297	Target Neighborhood Hits	426	Shared Neighborhood Hits	236
SwissProt Accessions	Q9CXV0	Gene names	Isl2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

CDX2_MOUSE
NC score	0.244039 (rank : 216)	θ value	0.62314 (rank : 157)
Query Neighborhood Hits	297	Target Neighborhood Hits	336	Shared Neighborhood Hits	238
SwissProt Accessions	P43241	Gene names	Cdx2, Cdx-2
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2).

HXB4_MOUSE
NC score	0.243967 (rank : 217)	θ value	0.813845 (rank : 174)
Query Neighborhood Hits	297	Target Neighborhood Hits	375	Shared Neighborhood Hits	243
SwissProt Accessions	P10284, Q3UZB4, Q4VBG0	Gene names	Hoxb4, Hox-2.6, Hoxb-4
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2.6).

PAX3_HUMAN
NC score	0.243860 (rank : 218)	θ value	5.27518 (rank : 257)
Query Neighborhood Hits	297	Target Neighborhood Hits	513	Shared Neighborhood Hits	252
SwissProt Accessions	P23760, Q16448	Gene names	PAX3, HUP2
Domain Architecture
Description	Paired box protein Pax-3 (HUP2).

PAX3_MOUSE
NC score	0.243752 (rank : 219)	θ value	5.27518 (rank : 258)
Query Neighborhood Hits	297	Target Neighborhood Hits	478	Shared Neighborhood Hits	247
SwissProt Accessions	P24610, Q3UFQ9, Q8BRE7, Q9CXI6	Gene names	Pax3, Pax-3
Domain Architecture
Description	Paired box protein Pax-3.

CDX1_HUMAN
NC score	0.242849 (rank : 220)	θ value	0.813845 (rank : 167)
Query Neighborhood Hits	297	Target Neighborhood Hits	382	Shared Neighborhood Hits	235
SwissProt Accessions	P47902, Q4VAU4, Q9NYK8	Gene names	CDX1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

PAX7_HUMAN
NC score	0.241890 (rank : 221)	θ value	5.27518 (rank : 259)
Query Neighborhood Hits	297	Target Neighborhood Hits	456	Shared Neighborhood Hits	252
SwissProt Accessions	P23759	Gene names	PAX7, HUP1
Domain Architecture
Description	Paired box protein Pax-7 (HUP1).

PAX7_MOUSE
NC score	0.241641 (rank : 222)	θ value	5.27518 (rank : 260)
Query Neighborhood Hits	297	Target Neighborhood Hits	422	Shared Neighborhood Hits	250
SwissProt Accessions	P47239, Q9ES16	Gene names	Pax7, Pax-7
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-7.

HHEX_HUMAN
NC score	0.241244 (rank : 223)	θ value	5.27518 (rank : 253)
Query Neighborhood Hits	297	Target Neighborhood Hits	358	Shared Neighborhood Hits	236
SwissProt Accessions	Q03014	Gene names	HHEX, HEX, PRH, PRHX
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

HHEX_MOUSE
NC score	0.241135 (rank : 224)	θ value	3.0926 (rank : 223)
Query Neighborhood Hits	297	Target Neighborhood Hits	350	Shared Neighborhood Hits	236
SwissProt Accessions	P43120	Gene names	Hhex, Prhx
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

HXD3_MOUSE
NC score	0.241083 (rank : 225)	θ value	θ > 10 (rank : 344)
Query Neighborhood Hits	297	Target Neighborhood Hits	435	Shared Neighborhood Hits	239
SwissProt Accessions	P09027, Q3UUD3	Gene names	Hoxd3, Hox-4.1, Hoxd-3
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4.1) (Homeobox protein MH-19).

HLX1_MOUSE
NC score	0.240762 (rank : 226)	θ value	θ > 10 (rank : 307)
Query Neighborhood Hits	297	Target Neighborhood Hits	362	Shared Neighborhood Hits	234
SwissProt Accessions	Q61670	Gene names	Hlx1, Hlx
Domain Architecture
Description	Homeobox protein HLX1.

ISL2_HUMAN
NC score	0.240742 (rank : 227)	θ value	0.47712 (rank : 154)
Query Neighborhood Hits	297	Target Neighborhood Hits	435	Shared Neighborhood Hits	241
SwissProt Accessions	Q96A47	Gene names	ISL2
Domain Architecture
Description	Insulin gene enhancer protein ISL-2 (Islet-2).

HXB8_HUMAN
NC score	0.240161 (rank : 228)	θ value	0.125558 (rank : 110)
Query Neighborhood Hits	297	Target Neighborhood Hits	324	Shared Neighborhood Hits	239
SwissProt Accessions	P17481, Q9H1I2	Gene names	HOXB8, HOX2D
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4).

HXB8_MOUSE
NC score	0.240155 (rank : 229)	θ value	0.125558 (rank : 111)
Query Neighborhood Hits	297	Target Neighborhood Hits	325	Shared Neighborhood Hits	239
SwissProt Accessions	P09632	Gene names	Hoxb8, Hox-2.4, Hoxb-8
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2.4).

CDX1_MOUSE
NC score	0.239681 (rank : 230)	θ value	0.813845 (rank : 168)
Query Neighborhood Hits	297	Target Neighborhood Hits	379	Shared Neighborhood Hits	231
SwissProt Accessions	P18111, Q8VCF7	Gene names	Cdx1, Cdx-1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

HLX1_HUMAN
NC score	0.238739 (rank : 231)	θ value	θ > 10 (rank : 306)
Query Neighborhood Hits	297	Target Neighborhood Hits	370	Shared Neighborhood Hits	230
SwissProt Accessions	Q14774, Q15988	Gene names	HLX1
Domain Architecture
Description	Homeobox protein HLX1 (Homeobox protein HB24).

CDX2_HUMAN
NC score	0.238276 (rank : 232)	θ value	3.0926 (rank : 220)
Query Neighborhood Hits	297	Target Neighborhood Hits	330	Shared Neighborhood Hits	235
SwissProt Accessions	Q99626, O00503, Q969L8	Gene names	CDX2, CDX3
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2) (CDX-3).

HXA4_HUMAN
NC score	0.237730 (rank : 233)	θ value	θ > 10 (rank : 314)
Query Neighborhood Hits	297	Target Neighborhood Hits	370	Shared Neighborhood Hits	239
SwissProt Accessions	Q00056, O43366	Gene names	HOXA4, HOX1D
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4).

HXC4_HUMAN
NC score	0.237604 (rank : 234)	θ value	6.88961 (rank : 272)
Query Neighborhood Hits	297	Target Neighborhood Hits	361	Shared Neighborhood Hits	238
SwissProt Accessions	P09017	Gene names	HOXC4, HOX3E
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3E) (CP19).

GSHI_HUMAN
NC score	0.237095 (rank : 235)	θ value	θ > 10 (rank : 304)
Query Neighborhood Hits	297	Target Neighborhood Hits	314	Shared Neighborhood Hits	234
SwissProt Accessions	Q9H4S2	Gene names	GSH1
Domain Architecture
Description	Homeobox protein GSH-1.

HXD3_HUMAN
NC score	0.236047 (rank : 236)	θ value	θ > 10 (rank : 343)
Query Neighborhood Hits	297	Target Neighborhood Hits	433	Shared Neighborhood Hits	241
SwissProt Accessions	P31249, Q99955, Q9BSC5	Gene names	HOXD3, HOX4A
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4A).

HXD10_MOUSE
NC score	0.235800 (rank : 237)	θ value	0.62314 (rank : 162)
Query Neighborhood Hits	297	Target Neighborhood Hits	392	Shared Neighborhood Hits	238
SwissProt Accessions	P28359, Q91WU9	Gene names	Hoxd10, Hox-4.5, Hoxd-10
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4.5) (Hox-5.3).

HXD10_HUMAN
NC score	0.235729 (rank : 238)	θ value	0.62314 (rank : 161)
Query Neighborhood Hits	297	Target Neighborhood Hits	392	Shared Neighborhood Hits	238
SwissProt Accessions	P28358	Gene names	HOXD10, HOX4D
Domain Architecture
Description	Homeobox protein Hox-D10 (Hox-4D) (Hox-4E).

GSHI_MOUSE
NC score	0.235505 (rank : 239)	θ value	θ > 10 (rank : 305)
Query Neighborhood Hits	297	Target Neighborhood Hits	313	Shared Neighborhood Hits	232
SwissProt Accessions	P31315	Gene names	Gsh1, Gsh-1
Domain Architecture
Description	Homeobox protein GSH-1.

HXD1_MOUSE
NC score	0.233185 (rank : 240)	θ value	3.0926 (rank : 229)
Query Neighborhood Hits	297	Target Neighborhood Hits	381	Shared Neighborhood Hits	240
SwissProt Accessions	Q01822	Gene names	Hoxd1, Hox-4.9, Hoxd-1
Domain Architecture
Description	Homeobox protein Hox-D1 (Hox-4.9).

HXC13_HUMAN
NC score	0.232229 (rank : 241)	θ value	6.88961 (rank : 270)
Query Neighborhood Hits	297	Target Neighborhood Hits	336	Shared Neighborhood Hits	237
SwissProt Accessions	P31276, Q96J32, Q9NR24, Q9NYD5	Gene names	HOXC13, HOX3G
Domain Architecture
Description	Homeobox protein Hox-C13 (Hox-3G).

HXC13_MOUSE
NC score	0.232177 (rank : 242)	θ value	6.88961 (rank : 271)
Query Neighborhood Hits	297	Target Neighborhood Hits	337	Shared Neighborhood Hits	237
SwissProt Accessions	P50207, Q53Z78, Q920I7	Gene names	Hoxc13, Hoxc-13
Domain Architecture
Description	Homeobox protein Hox-C13.

HXA4_MOUSE
NC score	0.232113 (rank : 243)	θ value	θ > 10 (rank : 315)
Query Neighborhood Hits	297	Target Neighborhood Hits	379	Shared Neighborhood Hits	233
SwissProt Accessions	P06798, Q61684, Q64388, Q8BPE6	Gene names	Hoxa4, Hox-1.4, Hoxa-4
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1.4) (Homeobox protein MH-3).

HXA3_MOUSE
NC score	0.228350 (rank : 244)	θ value	3.0926 (rank : 228)
Query Neighborhood Hits	297	Target Neighborhood Hits	558	Shared Neighborhood Hits	244
SwissProt Accessions	P02831, Q4V9Z8, Q61197	Gene names	Hoxa3, Hox-1.5, Hoxa-3
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1.5) (MO-10).

GSH2_MOUSE
NC score	0.228203 (rank : 245)	θ value	θ > 10 (rank : 303)
Query Neighborhood Hits	297	Target Neighborhood Hits	319	Shared Neighborhood Hits	232
SwissProt Accessions	P31316	Gene names	Gsh2, Gsh-2
Domain Architecture
Description	Homeobox protein GSH-2.

GSH2_HUMAN
NC score	0.227805 (rank : 246)	θ value	θ > 10 (rank : 302)
Query Neighborhood Hits	297	Target Neighborhood Hits	324	Shared Neighborhood Hits	232
SwissProt Accessions	Q9BZM3	Gene names	GSH2
Domain Architecture
Description	Homeobox protein GSH-2.

HXA3_HUMAN
NC score	0.226993 (rank : 247)	θ value	2.36792 (rank : 211)
Query Neighborhood Hits	297	Target Neighborhood Hits	535	Shared Neighborhood Hits	245
SwissProt Accessions	O43365	Gene names	HOXA3, HOX1E
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1E).

ATBF1_HUMAN
NC score	0.226945 (rank : 248)	θ value	0.0431538 (rank : 78)
Query Neighborhood Hits	297	Target Neighborhood Hits	1547	Shared Neighborhood Hits	262
SwissProt Accessions	Q15911, O15101, Q13719	Gene names	ATBF1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

HXD8_HUMAN
NC score	0.225717 (rank : 249)	θ value	0.813845 (rank : 176)
Query Neighborhood Hits	297	Target Neighborhood Hits	338	Shared Neighborhood Hits	241
SwissProt Accessions	P13378	Gene names	HOXD8, HOX4E
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4).

IPF1_MOUSE
NC score	0.225122 (rank : 250)	θ value	θ > 10 (rank : 348)
Query Neighborhood Hits	297	Target Neighborhood Hits	340	Shared Neighborhood Hits	233
SwissProt Accessions	P52946	Gene names	Ipf1, Pdx1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Islet/duodenum homeobox 1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Pancreas/duodenum homeobox 1).

HXD1_HUMAN
NC score	0.224963 (rank : 251)	θ value	θ > 10 (rank : 342)
Query Neighborhood Hits	297	Target Neighborhood Hits	337	Shared Neighborhood Hits	234
SwissProt Accessions	Q9GZZ0	Gene names	HOXD1
Domain Architecture
Description	Homeobox protein Hox-D1.

IPF1_HUMAN
NC score	0.224918 (rank : 252)	θ value	θ > 10 (rank : 347)
Query Neighborhood Hits	297	Target Neighborhood Hits	330	Shared Neighborhood Hits	233
SwissProt Accessions	P52945, O60594	Gene names	IPF1, PDX1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Pancreas/duodenum homeobox 1) (PDX- 1) (Islet/duodenum homeobox-1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Insulin upstream factor 1) (IUF-1) (Glucose- sensitive factor) (GSF).

PEPP2_HUMAN
NC score	0.223101 (rank : 253)	θ value	θ > 10 (rank : 371)
Query Neighborhood Hits	297	Target Neighborhood Hits	316	Shared Neighborhood Hits	223
SwissProt Accessions	Q9BQY4, Q9BR00	Gene names	PEPP2, THG1
Domain Architecture
Description	Paired-like homeobox protein PEPP-2 (Testis homeobox gene 1).

HXD8_MOUSE
NC score	0.223042 (rank : 254)	θ value	0.813845 (rank : 177)
Query Neighborhood Hits	297	Target Neighborhood Hits	333	Shared Neighborhood Hits	239
SwissProt Accessions	P23463	Gene names	Hoxd8, Hox-4.3, Hoxd-8
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4).

HXB9_HUMAN
NC score	0.222738 (rank : 255)	θ value	8.99809 (rank : 283)
Query Neighborhood Hits	297	Target Neighborhood Hits	344	Shared Neighborhood Hits	235
SwissProt Accessions	P17482, Q9H1I1	Gene names	HOXB9, HOX2E
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5).

ATBF1_MOUSE
NC score	0.221780 (rank : 256)	θ value	0.0736092 (rank : 93)
Query Neighborhood Hits	297	Target Neighborhood Hits	1841	Shared Neighborhood Hits	262
SwissProt Accessions	Q61329	Gene names	Atbf1
Domain Architecture
Description	Alpha-fetoprotein enhancer-binding protein (AT motif-binding factor) (AT-binding transcription factor 1).

HXB3_MOUSE
NC score	0.221393 (rank : 257)	θ value	8.99809 (rank : 282)
Query Neighborhood Hits	297	Target Neighborhood Hits	493	Shared Neighborhood Hits	242
SwissProt Accessions	P09026, P10285, Q4PJ06, Q61680	Gene names	Hoxb3, Hox-2.7, Hoxb-3
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2.7) (Homeobox protein MH-23).

HXB9_MOUSE
NC score	0.221280 (rank : 258)	θ value	8.99809 (rank : 284)
Query Neighborhood Hits	297	Target Neighborhood Hits	344	Shared Neighborhood Hits	233
SwissProt Accessions	P20615	Gene names	Hoxb9, Hox-2.5, Hoxb-9
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2.5).

HXC10_MOUSE
NC score	0.218182 (rank : 259)	θ value	θ > 10 (rank : 333)
Query Neighborhood Hits	297	Target Neighborhood Hits	417	Shared Neighborhood Hits	232
SwissProt Accessions	P31257, P31312, Q7TMT7	Gene names	Hoxc10, Hox-3.6, Hoxc-10
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C10 (Hox-3.6).

HXC10_HUMAN
NC score	0.218127 (rank : 260)	θ value	θ > 10 (rank : 332)
Query Neighborhood Hits	297	Target Neighborhood Hits	417	Shared Neighborhood Hits	232
SwissProt Accessions	Q9NYD6, O15219, O15220, Q9BVD5	Gene names	HOXC10
Domain Architecture
Description	Homeobox protein Hox-C10.

DUX3_HUMAN
NC score	0.217243 (rank : 261)	θ value	θ > 10 (rank : 301)
Query Neighborhood Hits	297	Target Neighborhood Hits	312	Shared Neighborhood Hits	226
SwissProt Accessions	Q96PT4, Q9UND2	Gene names	DUX3
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 3.

HXB3_HUMAN
NC score	0.217229 (rank : 262)	θ value	8.99809 (rank : 281)
Query Neighborhood Hits	297	Target Neighborhood Hits	559	Shared Neighborhood Hits	248
SwissProt Accessions	P14651, O95615, P17484	Gene names	HOXB3, HOX2G
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7).

HXD4_HUMAN
NC score	0.217128 (rank : 263)	θ value	θ > 10 (rank : 345)
Query Neighborhood Hits	297	Target Neighborhood Hits	337	Shared Neighborhood Hits	227
SwissProt Accessions	P09016, Q96AU0	Gene names	HOXD4, HOX4B
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4B) (Hox-5.1) (HHO.C13).

HXA9_MOUSE
NC score	0.216858 (rank : 264)	θ value	θ > 10 (rank : 323)
Query Neighborhood Hits	297	Target Neighborhood Hits	334	Shared Neighborhood Hits	232
SwissProt Accessions	P09631, O70154, O70155	Gene names	Hoxa9, Hox-1.7, Hoxa-9
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1.7).

HXA9_HUMAN
NC score	0.216509 (rank : 265)	θ value	θ > 10 (rank : 322)
Query Neighborhood Hits	297	Target Neighborhood Hits	332	Shared Neighborhood Hits	232
SwissProt Accessions	P31269, O43369, O43429, Q99820	Gene names	HOXA9, HOX1G
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1G).

HXA13_HUMAN
NC score	0.216209 (rank : 266)	θ value	θ > 10 (rank : 312)
Query Neighborhood Hits	297	Target Neighborhood Hits	353	Shared Neighborhood Hits	231
SwissProt Accessions	P31271, O43371	Gene names	HOXA13, HOX1J
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1J).

HXA13_MOUSE
NC score	0.215895 (rank : 267)	θ value	θ > 10 (rank : 313)
Query Neighborhood Hits	297	Target Neighborhood Hits	351	Shared Neighborhood Hits	231
SwissProt Accessions	Q62424	Gene names	Hoxa13, Hox-1.10
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1.10).

HXD4_MOUSE
NC score	0.214321 (rank : 268)	θ value	θ > 10 (rank : 346)
Query Neighborhood Hits	297	Target Neighborhood Hits	339	Shared Neighborhood Hits	227
SwissProt Accessions	P10628, P97451, Q3UXL6	Gene names	Hoxd4, Hox-4.2, Hoxd-4
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4.2) (Hox-5.1).

HXD9_HUMAN
NC score	0.213819 (rank : 269)	θ value	5.27518 (rank : 254)
Query Neighborhood Hits	297	Target Neighborhood Hits	352	Shared Neighborhood Hits	235
SwissProt Accessions	P28356	Gene names	HOXD9, HOX4C
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4C) (Hox-5.2).

HXB13_HUMAN
NC score	0.213493 (rank : 270)	θ value	θ > 10 (rank : 324)
Query Neighborhood Hits	297	Target Neighborhood Hits	377	Shared Neighborhood Hits	237
SwissProt Accessions	Q92826, Q96QM4, Q99810	Gene names	HOXB13
Domain Architecture
Description	Homeobox protein Hox-B13.

HXC9_MOUSE
NC score	0.213115 (rank : 271)	θ value	8.99809 (rank : 286)
Query Neighborhood Hits	297	Target Neighborhood Hits	338	Shared Neighborhood Hits	233
SwissProt Accessions	P09633	Gene names	Hoxc9, Hox-3.2, Hoxc-9
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3.2).

HXC9_HUMAN
NC score	0.212945 (rank : 272)	θ value	8.99809 (rank : 285)
Query Neighborhood Hits	297	Target Neighborhood Hits	339	Shared Neighborhood Hits	233
SwissProt Accessions	P31274, Q9H1I0	Gene names	HOXC9, HOX3B
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3B).

HXB13_MOUSE
NC score	0.211074 (rank : 273)	θ value	θ > 10 (rank : 325)
Query Neighborhood Hits	297	Target Neighborhood Hits	384	Shared Neighborhood Hits	231
SwissProt Accessions	P70321, Q80Y12	Gene names	Hoxb13
Domain Architecture
Description	Homeobox protein Hox-B13.

HXD9_MOUSE
NC score	0.209294 (rank : 274)	θ value	5.27518 (rank : 255)
Query Neighborhood Hits	297	Target Neighborhood Hits	359	Shared Neighborhood Hits	235
SwissProt Accessions	P28357, Q3UYS2	Gene names	Hoxd9, Hox-4.4, Hoxd-9
Domain Architecture
Description	Homeobox protein Hox-D9 (Hox-4.4) (Hox-5.2).

HXA10_MOUSE
NC score	0.209068 (rank : 275)	θ value	8.99809 (rank : 280)
Query Neighborhood Hits	297	Target Neighborhood Hits	365	Shared Neighborhood Hits	228
SwissProt Accessions	P31310, Q80Y22	Gene names	Hoxa10, Hox-1.8, Hoxa-10
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1.8).

HXA10_HUMAN
NC score	0.207622 (rank : 276)	θ value	θ > 10 (rank : 311)
Query Neighborhood Hits	297	Target Neighborhood Hits	334	Shared Neighborhood Hits	225
SwissProt Accessions	P31260, O43370, O43605, Q15949	Gene names	HOXA10, HOX1H
Domain Architecture
Description	Homeobox protein Hox-A10 (Hox-1H) (Hox-1.8) (PL).

HXC8_MOUSE
NC score	0.206608 (rank : 277)	θ value	θ > 10 (rank : 339)
Query Neighborhood Hits	297	Target Neighborhood Hits	327	Shared Neighborhood Hits	232
SwissProt Accessions	P09025	Gene names	Hoxc8, Hox-3.1, Hoxc-8
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3.1) (M31).

HXC8_HUMAN
NC score	0.206600 (rank : 278)	θ value	θ > 10 (rank : 338)
Query Neighborhood Hits	297	Target Neighborhood Hits	327	Shared Neighborhood Hits	232
SwissProt Accessions	P31273, O15221, O15362	Gene names	HOXC8, HOX3A
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3A).

HXC5_MOUSE
NC score	0.205456 (rank : 279)	θ value	θ > 10 (rank : 335)
Query Neighborhood Hits	297	Target Neighborhood Hits	316	Shared Neighborhood Hits	228
SwissProt Accessions	P32043, Q8BJW4	Gene names	Hoxc5, Hox-3.4, Hoxc-5
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3.4) (Hox-6.2).

HXC5_HUMAN
NC score	0.205443 (rank : 280)	θ value	θ > 10 (rank : 334)
Query Neighborhood Hits	297	Target Neighborhood Hits	316	Shared Neighborhood Hits	228
SwissProt Accessions	Q00444	Gene names	HOXC5, HOX3D
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3D) (CP11).

HXA5_MOUSE
NC score	0.204253 (rank : 281)	θ value	θ > 10 (rank : 317)
Query Neighborhood Hits	297	Target Neighborhood Hits	338	Shared Neighborhood Hits	230
SwissProt Accessions	P09021, Q91VQ5	Gene names	Hoxa5, Hox-1.3, Hoxa-5
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1.3) (M2).

HXA5_HUMAN
NC score	0.203207 (rank : 282)	θ value	θ > 10 (rank : 316)
Query Neighborhood Hits	297	Target Neighborhood Hits	336	Shared Neighborhood Hits	230
SwissProt Accessions	P20719, O43367, Q96CY6	Gene names	HOXA5, HOX1C
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1C).

HXD13_MOUSE
NC score	0.202685 (rank : 283)	θ value	θ > 10 (rank : 341)
Query Neighborhood Hits	297	Target Neighborhood Hits	324	Shared Neighborhood Hits	229
SwissProt Accessions	P70217, Q2VPB0, Q2VPB1, Q64177	Gene names	Hoxd13, Hox-4.8
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4.8).

HXD13_HUMAN
NC score	0.202681 (rank : 284)	θ value	θ > 10 (rank : 340)
Query Neighborhood Hits	297	Target Neighborhood Hits	332	Shared Neighborhood Hits	229
SwissProt Accessions	P35453	Gene names	HOXD13, HOX4I
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4I).

HXB7_MOUSE
NC score	0.200975 (rank : 285)	θ value	θ > 10 (rank : 331)
Query Neighborhood Hits	297	Target Neighborhood Hits	314	Shared Neighborhood Hits	231
SwissProt Accessions	P09024, Q3UW15	Gene names	Hoxb7, Hox-2.3, Hoxb-7
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2.3) (MUB1) (Homeobox protein MH-22B).

HXB7_HUMAN
NC score	0.199734 (rank : 286)	θ value	θ > 10 (rank : 330)
Query Neighborhood Hits	297	Target Neighborhood Hits	311	Shared Neighborhood Hits	231
SwissProt Accessions	P09629, Q15957	Gene names	HOXB7, HOX2C
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2C) (HHO.C1).

HXA7_MOUSE
NC score	0.197144 (rank : 287)	θ value	θ > 10 (rank : 321)
Query Neighborhood Hits	297	Target Neighborhood Hits	318	Shared Neighborhood Hits	232
SwissProt Accessions	P02830, Q544P0	Gene names	Hoxa7, Hox-1.1, Hoxa-7
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1.1) (M6-12) (M6).

HXB5_HUMAN
NC score	0.194305 (rank : 288)	θ value	θ > 10 (rank : 326)
Query Neighborhood Hits	297	Target Neighborhood Hits	332	Shared Neighborhood Hits	228
SwissProt Accessions	P09067, P09069	Gene names	HOXB5, HOX2A
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2A) (HHO.C10) (HU-1).

HXB5_MOUSE
NC score	0.194060 (rank : 289)	θ value	θ > 10 (rank : 327)
Query Neighborhood Hits	297	Target Neighborhood Hits	337	Shared Neighborhood Hits	228
SwissProt Accessions	P09079, Q3ZAY8	Gene names	Hoxb5, Hox-2.1, Hoxb-5
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2.1) (MU-1) (H24.1).

HXA7_HUMAN
NC score	0.193221 (rank : 290)	θ value	θ > 10 (rank : 320)
Query Neighborhood Hits	297	Target Neighborhood Hits	309	Shared Neighborhood Hits	230
SwissProt Accessions	P31268, O43368, O43486, O95655, Q9NSC8, Q9UDM1	Gene names	HOXA7, HOX1A
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1).

HXC6_HUMAN
NC score	0.185910 (rank : 291)	θ value	θ > 10 (rank : 336)
Query Neighborhood Hits	297	Target Neighborhood Hits	306	Shared Neighborhood Hits	225
SwissProt Accessions	P09630	Gene names	HOXC6, HOX3C
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3C) (HHO.C8) (CP25).

HXC6_MOUSE
NC score	0.185910 (rank : 292)	θ value	θ > 10 (rank : 337)
Query Neighborhood Hits	297	Target Neighborhood Hits	306	Shared Neighborhood Hits	225
SwissProt Accessions	P10629, Q61683	Gene names	Hoxc6, Hox-3.3, Hoxc-6
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3.3) (Hox-6.1).

HXB6_HUMAN
NC score	0.181390 (rank : 293)	θ value	θ > 10 (rank : 328)
Query Neighborhood Hits	297	Target Neighborhood Hits	307	Shared Neighborhood Hits	224
SwissProt Accessions	P17509, P09068, Q9HB11, Q9UGH2	Gene names	HOXB6, HOX2B
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2).

HXB6_MOUSE
NC score	0.181298 (rank : 294)	θ value	θ > 10 (rank : 329)
Query Neighborhood Hits	297	Target Neighborhood Hits	309	Shared Neighborhood Hits	224
SwissProt Accessions	P09023	Gene names	Hoxb6, Hox-2.2, Hoxb-6
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2.2) (Homeobox protein MH-22A).

HXA6_HUMAN
NC score	0.178904 (rank : 295)	θ value	θ > 10 (rank : 318)
Query Neighborhood Hits	297	Target Neighborhood Hits	309	Shared Neighborhood Hits	225
SwissProt Accessions	P31267, Q9UPM0	Gene names	HOXA6, HOX1B
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A6 (Hox-1B).

HXA6_MOUSE
NC score	0.175991 (rank : 296)	θ value	θ > 10 (rank : 319)
Query Neighborhood Hits	297	Target Neighborhood Hits	304	Shared Neighborhood Hits	223
SwissProt Accessions	P09092, Q9JI98	Gene names	Hoxa6, Hox-1.2, Hoxa-6
Domain Architecture
Description	Homeobox protein Hox-A6 (Hox-1.2) (M5-4).

DUX2_HUMAN
NC score	0.151693 (rank : 297)	θ value	θ > 10 (rank : 300)
Query Neighborhood Hits	297	Target Neighborhood Hits	173	Shared Neighborhood Hits	137
SwissProt Accessions	O75505	Gene names	DUX2
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 2.

CUTL2_HUMAN
NC score	0.148209 (rank : 298)	θ value	θ > 10 (rank : 298)
Query Neighborhood Hits	297	Target Neighborhood Hits	906	Shared Neighborhood Hits	146
SwissProt Accessions	O14529	Gene names	CUTL2, KIAA0293
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

CUTL2_MOUSE
NC score	0.147085 (rank : 299)	θ value	θ > 10 (rank : 299)
Query Neighborhood Hits	297	Target Neighborhood Hits	771	Shared Neighborhood Hits	143
SwissProt Accessions	P70298	Gene names	Cutl2
Domain Architecture
Description	Homeobox protein cut-like 2 (Homeobox protein Cux-2) (Cut-like 2).

SIX2_MOUSE
NC score	0.132320 (rank : 300)	θ value	2.36792 (rank : 217)
Query Neighborhood Hits	297	Target Neighborhood Hits	376	Shared Neighborhood Hits	228
SwissProt Accessions	Q62232, P70179	Gene names	Six2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

SIX1_MOUSE
NC score	0.130985 (rank : 301)	θ value	1.06291 (rank : 193)
Query Neighborhood Hits	297	Target Neighborhood Hits	341	Shared Neighborhood Hits	221
SwissProt Accessions	Q62231, Q8CIL7	Gene names	Six1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

SIX1_HUMAN
NC score	0.130881 (rank : 302)	θ value	1.06291 (rank : 192)
Query Neighborhood Hits	297	Target Neighborhood Hits	343	Shared Neighborhood Hits	221
SwissProt Accessions	Q15475, Q96H64	Gene names	SIX1
Domain Architecture
Description	Homeobox protein SIX1 (Sine oculis homeobox homolog 1).

SIX2_HUMAN
NC score	0.128952 (rank : 303)	θ value	2.36792 (rank : 216)
Query Neighborhood Hits	297	Target Neighborhood Hits	345	Shared Neighborhood Hits	211
SwissProt Accessions	Q9NPC8, Q9BXH7	Gene names	SIX2
Domain Architecture
Description	Homeobox protein SIX2 (Sine oculis homeobox homolog 2).

ZHX3_HUMAN
NC score	0.128047 (rank : 304)	θ value	θ > 10 (rank : 394)
Query Neighborhood Hits	297	Target Neighborhood Hits	331	Shared Neighborhood Hits	171
SwissProt Accessions	Q9H4I2, O43145	Gene names	ZHX3, KIAA0395, TIX1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

HNF6_HUMAN
NC score	0.112839 (rank : 305)	θ value	8.99809 (rank : 279)
Query Neighborhood Hits	297	Target Neighborhood Hits	127	Shared Neighborhood Hits	72
SwissProt Accessions	Q9UBC0, Q99744, Q9UMR6	Gene names	ONECUT1, HNF6, HNF6A
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

HNF6_MOUSE
NC score	0.112149 (rank : 306)	θ value	θ > 10 (rank : 308)
Query Neighborhood Hits	297	Target Neighborhood Hits	124	Shared Neighborhood Hits	74
SwissProt Accessions	O08755	Gene names	Onecut1, Hnf6, Hnf6a
Domain Architecture
Description	Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1).

CUTL1_MOUSE
NC score	0.112119 (rank : 307)	θ value	0.62314 (rank : 158)
Query Neighborhood Hits	297	Target Neighborhood Hits	1620	Shared Neighborhood Hits	185
SwissProt Accessions	P53564, O08994, P70301, Q571L6, Q91ZD2	Gene names	Cutl1, Cux, Cux1, Kiaa4047
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP) (Homeobox protein Cux).

PBX2_MOUSE
NC score	0.110752 (rank : 308)	θ value	θ > 10 (rank : 367)
Query Neighborhood Hits	297	Target Neighborhood Hits	341	Shared Neighborhood Hits	203
SwissProt Accessions	O35984	Gene names	Pbx2
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2).

CUTL1_HUMAN
NC score	0.109512 (rank : 309)	θ value	0.365318 (rank : 147)
Query Neighborhood Hits	297	Target Neighborhood Hits	1574	Shared Neighborhood Hits	178
SwissProt Accessions	P39880, Q6NYH4, Q9UEV5	Gene names	CUTL1
Domain Architecture	No domain graphic available
Description	Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP).

ZHX3_MOUSE
NC score	0.108641 (rank : 310)	θ value	5.27518 (rank : 262)
Query Neighborhood Hits	297	Target Neighborhood Hits	321	Shared Neighborhood Hits	166
SwissProt Accessions	Q8C0Q2, Q80U14	Gene names	Zhx3, Kiaa0395, Tix1
Domain Architecture
Description	Zinc finger and homeodomain protein 3 (Triple homeobox protein 1).

PBX2_HUMAN
NC score	0.107858 (rank : 311)	θ value	θ > 10 (rank : 366)
Query Neighborhood Hits	297	Target Neighborhood Hits	350	Shared Neighborhood Hits	203
SwissProt Accessions	P40425	Gene names	PBX2, G17
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2) (Protein G17).

SIX4_MOUSE
NC score	0.106497 (rank : 312)	θ value	θ > 10 (rank : 386)
Query Neighborhood Hits	297	Target Neighborhood Hits	341	Shared Neighborhood Hits	198
SwissProt Accessions	Q61321, Q61322, Q61323	Gene names	Six4, Arec3
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4) (Skeletal muscle-specific ARE-binding protein AREC3).

SIX4_HUMAN
NC score	0.106202 (rank : 313)	θ value	θ > 10 (rank : 385)
Query Neighborhood Hits	297	Target Neighborhood Hits	342	Shared Neighborhood Hits	201
SwissProt Accessions	Q9UIU6	Gene names	SIX4
Domain Architecture
Description	Homeobox protein SIX4 (Sine oculis homeobox homolog 4).

ONEC2_HUMAN
NC score	0.099324 (rank : 314)	θ value	θ > 10 (rank : 362)
Query Neighborhood Hits	297	Target Neighborhood Hits	115	Shared Neighborhood Hits	69
SwissProt Accessions	O95948	Gene names	ONECUT2
Domain Architecture
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

PBX1_HUMAN
NC score	0.097832 (rank : 315)	θ value	θ > 10 (rank : 364)
Query Neighborhood Hits	297	Target Neighborhood Hits	317	Shared Neighborhood Hits	194
SwissProt Accessions	P40424	Gene names	PBX1, PRL
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1) (Homeobox protein PRL).

PBX1_MOUSE
NC score	0.097832 (rank : 316)	θ value	θ > 10 (rank : 365)
Query Neighborhood Hits	297	Target Neighborhood Hits	317	Shared Neighborhood Hits	194
SwissProt Accessions	P41778	Gene names	Pbx1, Pbx-1
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1).

ONEC2_MOUSE
NC score	0.096409 (rank : 317)	θ value	θ > 10 (rank : 363)
Query Neighborhood Hits	297	Target Neighborhood Hits	123	Shared Neighborhood Hits	69
SwissProt Accessions	Q6XBJ3	Gene names	Onecut2, Oc2
Domain Architecture	No domain graphic available
Description	One cut domain family member 2 (Transcription factor ONECUT-2) (OC-2).

PBX3_MOUSE
NC score	0.096191 (rank : 318)	θ value	θ > 10 (rank : 369)
Query Neighborhood Hits	297	Target Neighborhood Hits	306	Shared Neighborhood Hits	197
SwissProt Accessions	O35317, Q925W2	Gene names	Pbx3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX3_HUMAN
NC score	0.096178 (rank : 319)	θ value	θ > 10 (rank : 368)
Query Neighborhood Hits	297	Target Neighborhood Hits	306	Shared Neighborhood Hits	197
SwissProt Accessions	P40426, Q96PF9, Q96PG0	Gene names	PBX3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX4_MOUSE
NC score	0.094353 (rank : 320)	θ value	θ > 10 (rank : 370)
Query Neighborhood Hits	297	Target Neighborhood Hits	324	Shared Neighborhood Hits	197
SwissProt Accessions	Q99NE9, Q8CFL2, Q99NE8	Gene names	Pbx4
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 4 (Homeobox protein PBX4).

ZHX1_MOUSE
NC score	0.090689 (rank : 321)	θ value	θ > 10 (rank : 392)
Query Neighborhood Hits	297	Target Neighborhood Hits	334	Shared Neighborhood Hits	169
SwissProt Accessions	P70121, Q8BQ68, Q8C6T4, Q8CJG3	Gene names	Zhx1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

SIX6_HUMAN
NC score	0.089443 (rank : 322)	θ value	θ > 10 (rank : 389)
Query Neighborhood Hits	297	Target Neighborhood Hits	269	Shared Neighborhood Hits	183
SwissProt Accessions	O95475, Q9P1X8	Gene names	SIX6, OPTX2, SIX9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Homeodomain protein OPTX2).

ZHX2_HUMAN
NC score	0.088902 (rank : 323)	θ value	6.88961 (rank : 278)
Query Neighborhood Hits	297	Target Neighborhood Hits	347	Shared Neighborhood Hits	144
SwissProt Accessions	Q9Y6X8	Gene names	ZHX2, AFR1, KIAA0854, RAF
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

SIX3_HUMAN
NC score	0.088616 (rank : 324)	θ value	θ > 10 (rank : 383)
Query Neighborhood Hits	297	Target Neighborhood Hits	285	Shared Neighborhood Hits	190
SwissProt Accessions	O95343	Gene names	SIX3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX3_MOUSE
NC score	0.088595 (rank : 325)	θ value	θ > 10 (rank : 384)
Query Neighborhood Hits	297	Target Neighborhood Hits	289	Shared Neighborhood Hits	190
SwissProt Accessions	Q62233, P70176, P70177	Gene names	Six3
Domain Architecture
Description	Homeobox protein SIX3 (Sine oculis homeobox homolog 3).

SIX6_MOUSE
NC score	0.085219 (rank : 326)	θ value	θ > 10 (rank : 390)
Query Neighborhood Hits	297	Target Neighborhood Hits	267	Shared Neighborhood Hits	185
SwissProt Accessions	Q9QZ28, O88423	Gene names	Six6, Optx2, Six9
Domain Architecture
Description	Homeobox protein SIX6 (Sine oculis homeobox homolog 6) (Optic homeobox 2) (Six9 protein).

ZHX1_HUMAN
NC score	0.084376 (rank : 327)	θ value	θ > 10 (rank : 391)
Query Neighborhood Hits	297	Target Neighborhood Hits	307	Shared Neighborhood Hits	160
SwissProt Accessions	Q9UKY1, Q8IWD8	Gene names	ZHX1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

ADNP_HUMAN
NC score	0.084351 (rank : 328)	θ value	0.47712 (rank : 152)
Query Neighborhood Hits	297	Target Neighborhood Hits	265	Shared Neighborhood Hits	33
SwissProt Accessions	Q9H2P0, O94881, Q9UG34	Gene names	ADNP, KIAA0784
Domain Architecture
Description	Activity-dependent neuroprotector (Activity-dependent neuroprotective protein).

ADNP_MOUSE
NC score	0.080100 (rank : 329)	θ value	0.813845 (rank : 165)
Query Neighborhood Hits	297	Target Neighborhood Hits	232	Shared Neighborhood Hits	37
SwissProt Accessions	Q9Z103	Gene names	Adnp
Domain Architecture
Description	Activity-dependent neuroprotector (Activity-dependent neuroprotective protein).

SIX5_HUMAN
NC score	0.079627 (rank : 330)	θ value	θ > 10 (rank : 387)
Query Neighborhood Hits	297	Target Neighborhood Hits	386	Shared Neighborhood Hits	176
SwissProt Accessions	Q8N196	Gene names	SIX5, DMAHP
Domain Architecture	No domain graphic available
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein).

LMO4_HUMAN
NC score	0.078424 (rank : 331)	θ value	θ > 10 (rank : 360)
Query Neighborhood Hits	297	Target Neighborhood Hits	111	Shared Neighborhood Hits	20
SwissProt Accessions	P61968, O00158, O88894	Gene names	LMO4
Domain Architecture
Description	LIM domain transcription factor LMO4 (LIM domain only protein 4) (LMO- 4) (Breast tumor autoantigen).

LMO4_MOUSE
NC score	0.078424 (rank : 332)	θ value	θ > 10 (rank : 361)
Query Neighborhood Hits	297	Target Neighborhood Hits	111	Shared Neighborhood Hits	20
SwissProt Accessions	P61969, O00158, O88894	Gene names	Lmo4
Domain Architecture
Description	LIM domain transcription factor LMO4 (LIM domain only protein 4) (LMO- 4) (Breast tumor autoantigen).

HOP_HUMAN
NC score	0.077662 (rank : 333)	θ value	θ > 10 (rank : 309)
Query Neighborhood Hits	297	Target Neighborhood Hits	107	Shared Neighborhood Hits	80
SwissProt Accessions	Q9BPY8, Q8N0V6, Q96CI1	Gene names	HOP, HOD, LAGY, NECC1, OB1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Lung cancer-associated Y protein) (Odd homeobox protein 1) (Not expressed in choriocarcinoma protein 1).

IRX6_MOUSE
NC score	0.076273 (rank : 334)	θ value	θ > 10 (rank : 352)
Query Neighborhood Hits	297	Target Neighborhood Hits	256	Shared Neighborhood Hits	149
SwissProt Accessions	Q9ER75	Gene names	Irx6, Irxb3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

RBTN1_HUMAN
NC score	0.076019 (rank : 335)	θ value	θ > 10 (rank : 378)
Query Neighborhood Hits	297	Target Neighborhood Hits	110	Shared Neighborhood Hits	19
SwissProt Accessions	P25800, Q4VBC5	Gene names	LMO1, RBTN1, RHOM1, TTG1
Domain Architecture
Description	Rhombotin-1 (Cysteine-rich protein TTG-1) (T-cell translocation protein 1) (LIM-only protein 1).

RBTN1_MOUSE
NC score	0.076016 (rank : 336)	θ value	θ > 10 (rank : 379)
Query Neighborhood Hits	297	Target Neighborhood Hits	109	Shared Neighborhood Hits	19
SwissProt Accessions	Q924W9	Gene names	Lmo1, Rbtn1, Rhom1, Ttg1
Domain Architecture	No domain graphic available
Description	Rhombotin-1 (Cysteine-rich protein TTG-1) (LIM-only protein 1).

LMO3_HUMAN
NC score	0.075613 (rank : 337)	θ value	θ > 10 (rank : 358)
Query Neighborhood Hits	297	Target Neighborhood Hits	111	Shared Neighborhood Hits	19
SwissProt Accessions	Q8TAP4, Q8N974, Q9UDD5	Gene names	LMO3, RBTN3, RHOM3
Domain Architecture
Description	LIM-only protein 3 (Neuronal-specific transcription factor DAT1) (Rhombotin-3).

LMO3_MOUSE
NC score	0.075613 (rank : 338)	θ value	θ > 10 (rank : 359)
Query Neighborhood Hits	297	Target Neighborhood Hits	111	Shared Neighborhood Hits	19
SwissProt Accessions	Q8BZL8	Gene names	Lmo3
Domain Architecture
Description	LIM-only protein 3 (Neuronal-specific transcription factor DAT1).

ZHX2_MOUSE
NC score	0.074620 (rank : 339)	θ value	θ > 10 (rank : 393)
Query Neighborhood Hits	297	Target Neighborhood Hits	435	Shared Neighborhood Hits	141
SwissProt Accessions	Q8C0C0	Gene names	Zhx2, Afr1, Raf
Domain Architecture
Description	Zinc fingers and homeoboxes protein 2 (Zinc finger and homeodomain protein 2) (Alpha-fetoprotein regulator 1) (AFP regulator 1) (Regulator of AFP).

RBTN2_MOUSE
NC score	0.073113 (rank : 340)	θ value	θ > 10 (rank : 381)
Query Neighborhood Hits	297	Target Neighborhood Hits	114	Shared Neighborhood Hits	20
SwissProt Accessions	P25801	Gene names	Lmo2, Rbtn-2, Rbtn2, Rhom-2
Domain Architecture
Description	Rhombotin-2 (Cysteine-rich protein TTG-2) (T-cell translocation protein 2) (LIM-only protein 2).

RBTN2_HUMAN
NC score	0.073111 (rank : 341)	θ value	θ > 10 (rank : 380)
Query Neighborhood Hits	297	Target Neighborhood Hits	114	Shared Neighborhood Hits	20
SwissProt Accessions	P25791, Q9HD58	Gene names	LMO2, RBTN2, RHOM2, TTG2
Domain Architecture
Description	Rhombotin-2 (Cysteine-rich protein TTG-2) (T-cell translocation protein 2) (LIM-only protein 2).

IRX6_HUMAN
NC score	0.070695 (rank : 342)	θ value	θ > 10 (rank : 351)
Query Neighborhood Hits	297	Target Neighborhood Hits	262	Shared Neighborhood Hits	151
SwissProt Accessions	P78412, Q7Z2K0	Gene names	IRX6, IRX7, IRXB3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-6 (Iroquois homeobox protein 6) (Homeodomain protein IRXB3).

IRX4_MOUSE
NC score	0.070453 (rank : 343)	θ value	θ > 10 (rank : 350)
Query Neighborhood Hits	297	Target Neighborhood Hits	286	Shared Neighborhood Hits	166
SwissProt Accessions	Q9QY61	Gene names	Irx4, Irxa3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

IRX4_HUMAN
NC score	0.069602 (rank : 344)	θ value	θ > 10 (rank : 349)
Query Neighborhood Hits	297	Target Neighborhood Hits	276	Shared Neighborhood Hits	167
SwissProt Accessions	P78413, Q9UHR2	Gene names	IRX4, IRXA3
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-4 (Iroquois homeobox protein 4) (Homeodomain protein IRXA3).

HOP_MOUSE
NC score	0.066320 (rank : 345)	θ value	θ > 10 (rank : 310)
Query Neighborhood Hits	297	Target Neighborhood Hits	102	Shared Neighborhood Hits	73
SwissProt Accessions	Q8R1H0, Q8C1N5, Q8CJ22	Gene names	Hop, Hod, Ob1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Homeobox-only protein) (Odd homeobox protein 1) (mOB1).

SIX5_MOUSE
NC score	0.064247 (rank : 346)	θ value	θ > 10 (rank : 388)
Query Neighborhood Hits	297	Target Neighborhood Hits	354	Shared Neighborhood Hits	156
SwissProt Accessions	P70178	Gene names	Six5, Dmahp
Domain Architecture
Description	Homeobox protein SIX5 (DM locus-associated homeodomain protein homolog).

IRX2_HUMAN
NC score	0.053634 (rank : 347)	θ value	4.03905 (rank : 243)
Query Neighborhood Hits	297	Target Neighborhood Hits	358	Shared Neighborhood Hits	138
SwissProt Accessions	Q9BZI1, Q7Z2I7	Gene names	IRX2, IRXA2
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-2 (Iroquois homeobox protein 2) (Homeodomain protein IRXA2).

RHOX5_MOUSE
NC score	0.053368 (rank : 348)	θ value	θ > 10 (rank : 382)
Query Neighborhood Hits	297	Target Neighborhood Hits	69	Shared Neighborhood Hits	47
SwissProt Accessions	P52651	Gene names	Rhox5, Pem
Domain Architecture	No domain graphic available
Description	Homeobox protein Rhox5 (Reproductive homeobox on chromosome X 5) (Homeobox protein Pem) (Placenta and embryonic expression protein).

LMO6_MOUSE
NC score	0.035948 (rank : 349)	θ value	2.36792 (rank : 212)
Query Neighborhood Hits	297	Target Neighborhood Hits	277	Shared Neighborhood Hits	27
SwissProt Accessions	Q80VL3, Q8CAY9	Gene names	Lmo6
Domain Architecture	No domain graphic available
Description	LIM domain only protein 6 (Triple LIM domain protein 6).

TCF8_HUMAN
NC score	0.033540 (rank : 350)	θ value	0.163984 (rank : 122)
Query Neighborhood Hits	297	Target Neighborhood Hits	1057	Shared Neighborhood Hits	48
SwissProt Accessions	P37275, Q12924, Q13800	Gene names	TCF8, AREB6
Domain Architecture
Description	Transcription factor 8 (NIL-2-A zinc finger protein) (Negative regulator of IL2).

ATX2_MOUSE
NC score	0.024661 (rank : 351)	θ value	1.06291 (rank : 184)
Query Neighborhood Hits	297	Target Neighborhood Hits	445	Shared Neighborhood Hits	25
SwissProt Accessions	O70305, P97421	Gene names	Atxn2, Atx2, Sca2
Domain Architecture	No domain graphic available
Description	Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog).

RERE_HUMAN
NC score	0.024508 (rank : 352)	θ value	0.365318 (rank : 151)
Query Neighborhood Hits	297	Target Neighborhood Hits	779	Shared Neighborhood Hits	36
SwissProt Accessions	Q9P2R6, O43393, O75046, O75359, Q5VXL9, Q6P6B9, Q9Y2W4	Gene names	RERE, ARG, ARP, ATN1L, KIAA0458
Domain Architecture	No domain graphic available
Description	Arginine-glutamic acid dipeptide repeats protein (Atrophin-1-like protein) (Atrophin-1-related protein).

CBP_HUMAN
NC score	0.024232 (rank : 353)	θ value	1.81305 (rank : 205)
Query Neighborhood Hits	297	Target Neighborhood Hits	941	Shared Neighborhood Hits	35
SwissProt Accessions	Q92793, O00147, Q16376	Gene names	CREBBP, CBP
Domain Architecture
Description	CREB-binding protein (EC 2.3.1.48).

AFAD_HUMAN
NC score	0.023205 (rank : 354)	θ value	0.125558 (rank : 106)
Query Neighborhood Hits	297	Target Neighborhood Hits	689	Shared Neighborhood Hits	15
SwissProt Accessions	P55196, O75087, O75088, O75089, Q5TIG6, Q9NSN7, Q9NU92	Gene names	MLLT4, AF6
Domain Architecture
Description	Afadin (Protein AF-6).

CBP_MOUSE
NC score	0.023018 (rank : 355)	θ value	1.81305 (rank : 206)
Query Neighborhood Hits	297	Target Neighborhood Hits	1051	Shared Neighborhood Hits	40
SwissProt Accessions	P45481	Gene names	Crebbp, Cbp
Domain Architecture
Description	CREB-binding protein (EC 2.3.1.48).

ARI1B_HUMAN
NC score	0.021860 (rank : 356)	θ value	1.38821 (rank : 196)
Query Neighborhood Hits	297	Target Neighborhood Hits	567	Shared Neighborhood Hits	29
SwissProt Accessions	Q8NFD5, Q5JRD1, Q5VYC4, Q8IZY8, Q8TEV0, Q8TF02, Q99491, Q9ULI5	Gene names	ARID1B, DAN15, KIAA1235, OSA2
Domain Architecture	No domain graphic available
Description	AT-rich interactive domain-containing protein 1B (ARID domain- containing protein 1B) (Osa homolog 2) (hOsa2) (p250R) (BRG1-binding protein hELD/OSA1) (BRG1-associated factor 250b) (BAF250B).

TULP4_HUMAN
NC score	0.021820 (rank : 357)	θ value	1.06291 (rank : 194)
Query Neighborhood Hits	297	Target Neighborhood Hits	426	Shared Neighborhood Hits	20
SwissProt Accessions	Q9NRJ4, Q9HD22, Q9P2F0	Gene names	TULP4, KIAA1397, TUSP
Domain Architecture
Description	Tubby-like protein 4 (Tubby superfamily protein).

K0460_MOUSE
NC score	0.021133 (rank : 358)	θ value	1.38821 (rank : 199)
Query Neighborhood Hits	297	Target Neighborhood Hits	374	Shared Neighborhood Hits	16
SwissProt Accessions	Q6NXI6, Q3U3L8, Q6ZQA7	Gene names	Kiaa0460
Domain Architecture	No domain graphic available
Description	Protein KIAA0460.

HNRL1_HUMAN
NC score	0.015967 (rank : 359)	θ value	3.0926 (rank : 226)
Query Neighborhood Hits	297	Target Neighborhood Hits	173	Shared Neighborhood Hits	14
SwissProt Accessions	Q9BUJ2, O76022, Q6ZSZ0, Q7L8P4, Q8N6Z4, Q96G37, Q9HAL3, Q9UG75	Gene names	HNRPUL1, E1BAP5
Domain Architecture	No domain graphic available
Description	Heterogeneous nuclear ribonucleoprotein U-like protein 1 (Adenovirus early region 1B-associated protein 5) (E1B-55 kDa-associated protein 5) (E1B-AP5).

TCF8_MOUSE
NC score	0.015443 (rank : 360)	θ value	6.88961 (rank : 277)
Query Neighborhood Hits	297	Target Neighborhood Hits	1067	Shared Neighborhood Hits	49
SwissProt Accessions	Q64318, Q62519	Gene names	Tcf8, Zfhx1a, Zfx1a, Zfx1ha
Domain Architecture
Description	Transcription factor 8 (Zinc finger homeobox protein 1a) (MEB1) (Delta EF1).

SYN3_HUMAN
NC score	0.015348 (rank : 361)	θ value	1.81305 (rank : 209)
Query Neighborhood Hits	297	Target Neighborhood Hits	203	Shared Neighborhood Hits	9
SwissProt Accessions	O14994	Gene names	SYN3
Domain Architecture
Description	Synapsin-3 (Synapsin III).

ATX2_HUMAN
NC score	0.015218 (rank : 362)	θ value	5.27518 (rank : 250)
Query Neighborhood Hits	297	Target Neighborhood Hits	375	Shared Neighborhood Hits	15
SwissProt Accessions	Q99700, Q6ZQZ7, Q99493	Gene names	ATXN2, ATX2, SCA2, TNRC13
Domain Architecture	No domain graphic available
Description	Ataxin-2 (Spinocerebellar ataxia type 2 protein) (Trinucleotide repeat-containing gene 13 protein).

K0240_HUMAN
NC score	0.014880 (rank : 363)	θ value	5.27518 (rank : 256)
Query Neighborhood Hits	297	Target Neighborhood Hits	96	Shared Neighborhood Hits	9
SwissProt Accessions	Q6AI39, Q5TFZ3, Q92514	Gene names	KIAA0240
Domain Architecture	No domain graphic available
Description	Protein KIAA0240.

HNRL1_MOUSE
NC score	0.014402 (rank : 364)	θ value	4.03905 (rank : 241)
Query Neighborhood Hits	297	Target Neighborhood Hits	200	Shared Neighborhood Hits	15
SwissProt Accessions	Q8VDM6, Q3U201, Q3UPB0, Q6AZA7, Q8BY45, Q8K365	Gene names	Hnrpul1
Domain Architecture	No domain graphic available
Description	Heterogeneous nuclear ribonucleoprotein U-like protein 1.

GMIP_HUMAN
NC score	0.013543 (rank : 365)	θ value	0.21417 (rank : 125)
Query Neighborhood Hits	297	Target Neighborhood Hits	225	Shared Neighborhood Hits	4
SwissProt Accessions	Q9P107	Gene names	GMIP
Domain Architecture	No domain graphic available
Description	GEM-interacting protein (GMIP).

NCOR2_HUMAN
NC score	0.011942 (rank : 366)	θ value	1.38821 (rank : 200)
Query Neighborhood Hits	297	Target Neighborhood Hits	870	Shared Neighborhood Hits	27
SwissProt Accessions	Q9Y618, O00613, O15416, Q13354, Q9Y5U0	Gene names	NCOR2, CTG26
Domain Architecture
Description	Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor- associating factor) (TRAC) (CTG repeat protein 26) (SMAP270).

RNF13_MOUSE
NC score	0.011636 (rank : 367)	θ value	2.36792 (rank : 215)
Query Neighborhood Hits	297	Target Neighborhood Hits	164	Shared Neighborhood Hits	3
SwissProt Accessions	O54965, O54966	Gene names	Rnf13, Rzf
Domain Architecture
Description	RING finger protein 13.

FBX42_MOUSE
NC score	0.010235 (rank : 368)	θ value	4.03905 (rank : 240)
Query Neighborhood Hits	297	Target Neighborhood Hits	84	Shared Neighborhood Hits	3
SwissProt Accessions	Q6PDJ6, Q8CE76, Q99KY2	Gene names	Fbxo42
Domain Architecture	No domain graphic available
Description	F-box only protein 42.

K0240_MOUSE
NC score	0.010011 (rank : 369)	θ value	6.88961 (rank : 273)
Query Neighborhood Hits	297	Target Neighborhood Hits	211	Shared Neighborhood Hits	8
SwissProt Accessions	Q8CHH5	Gene names	Kiaa0240
Domain Architecture	No domain graphic available
Description	Protein KIAA0240.

ZCH11_HUMAN
NC score	0.009986 (rank : 370)	θ value	4.03905 (rank : 249)
Query Neighborhood Hits	297	Target Neighborhood Hits	278	Shared Neighborhood Hits	7
SwissProt Accessions	Q5TAX3, Q12764, Q5TAX4, Q86XZ3	Gene names	ZCCHC11, KIAA0191
Domain Architecture	No domain graphic available
Description	Zinc finger CCHC domain-containing protein 11.

MAFB_MOUSE
NC score	0.008304 (rank : 371)	θ value	6.88961 (rank : 274)
Query Neighborhood Hits	297	Target Neighborhood Hits	92	Shared Neighborhood Hits	4
SwissProt Accessions	P54841	Gene names	Mafb, Krml, Maf1
Domain Architecture
Description	Transcription factor MafB (V-maf musculoaponeurotic fibrosarcoma oncogene homolog B) (Transcription factor MAF1) (Segmentation protein KR) (Kreisler).

MAF_MOUSE
NC score	0.006829 (rank : 372)	θ value	8.99809 (rank : 289)
Query Neighborhood Hits	297	Target Neighborhood Hits	95	Shared Neighborhood Hits	4
SwissProt Accessions	P54843	Gene names	Maf, Maf2
Domain Architecture
Description	Transcription factor Maf (Proto-oncogene c-maf).

NPBL_MOUSE
NC score	0.006760 (rank : 373)	θ value	4.03905 (rank : 247)
Query Neighborhood Hits	297	Target Neighborhood Hits	1041	Shared Neighborhood Hits	21
SwissProt Accessions	Q6KCD5, Q6KC78, Q7TNS4, Q8BKV4, Q8CES9, Q9CUC6	Gene names	Nipbl
Domain Architecture	No domain graphic available
Description	Nipped-B-like protein (Delangin homolog) (SCC2 homolog).

SMAD1_MOUSE
NC score	0.006666 (rank : 374)	θ value	3.0926 (rank : 236)
Query Neighborhood Hits	297	Target Neighborhood Hits	56	Shared Neighborhood Hits	4
SwissProt Accessions	P70340, P70442, Q9CYK6	Gene names	Smad1, Madh1, Madr1
Domain Architecture
Description	Mothers against decapentaplegic homolog 1 (SMAD 1) (Mothers against DPP homolog 1) (Mad-related protein 1) (Mothers-against-DPP-related 1) (mMad1) (Dwarfin-A) (Dwf-A).

SMAD1_HUMAN
NC score	0.006552 (rank : 375)	θ value	3.0926 (rank : 235)
Query Neighborhood Hits	297	Target Neighborhood Hits	59	Shared Neighborhood Hits	3
SwissProt Accessions	Q15797, Q16636	Gene names	SMAD1, BSP1, MADH1, MADR1
Domain Architecture
Description	Mothers against decapentaplegic homolog 1 (SMAD 1) (Mothers against DPP homolog 1) (Mad-related protein 1) (Transforming growth factor- beta signaling protein 1) (BSP-1) (hSMAD1) (JV4-1).

FOXC2_HUMAN
NC score	0.006417 (rank : 376)	θ value	0.813845 (rank : 171)
Query Neighborhood Hits	297	Target Neighborhood Hits	236	Shared Neighborhood Hits	14
SwissProt Accessions	Q99958	Gene names	FOXC2, FKHL14, MFH1
Domain Architecture
Description	Forkhead box protein C2 (Forkhead-related protein FKHL14) (Mesenchyme fork head protein 1) (MFH-1 protein) (Transcription factor FKH-14).

PROM1_MOUSE
NC score	0.006161 (rank : 377)	θ value	6.88961 (rank : 275)
Query Neighborhood Hits	297	Target Neighborhood Hits	77	Shared Neighborhood Hits	2
SwissProt Accessions	O54990, O35408	Gene names	Prom1, Prom, Proml1
Domain Architecture
Description	Prominin-1 precursor (Prominin-like protein 1) (Antigen AC133 homolog).

FOXJ2_HUMAN
NC score	0.006056 (rank : 378)	θ value	1.06291 (rank : 186)
Query Neighborhood Hits	297	Target Neighborhood Hits	239	Shared Neighborhood Hits	14
SwissProt Accessions	Q9P0K8, Q96PS9, Q9NSN5	Gene names	FOXJ2, FHX
Domain Architecture
Description	Forkhead box protein J2 (Fork head homologous X).

MN1_HUMAN
NC score	0.006034 (rank : 379)	θ value	8.99809 (rank : 290)
Query Neighborhood Hits	297	Target Neighborhood Hits	196	Shared Neighborhood Hits	8
SwissProt Accessions	Q10571	Gene names	MN1
Domain Architecture	No domain graphic available
Description	Probable tumor suppressor protein MN1.

SOX1_MOUSE
NC score	0.005322 (rank : 380)	θ value	3.0926 (rank : 237)
Query Neighborhood Hits	297	Target Neighborhood Hits	90	Shared Neighborhood Hits	4
SwissProt Accessions	P53783	Gene names	Sox1, Sox-1
Domain Architecture
Description	SOX-1 protein.

IF4G1_HUMAN
NC score	0.004805 (rank : 381)	θ value	4.03905 (rank : 242)
Query Neighborhood Hits	297	Target Neighborhood Hits	347	Shared Neighborhood Hits	13
SwissProt Accessions	Q04637, O43177, O95066, Q5HYG0, Q6ZN21, Q8N102	Gene names	EIF4G1, EIF4G, EIF4GI
Domain Architecture
Description	Eukaryotic translation initiation factor 4 gamma 1 (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220).

PSD4_MOUSE
NC score	0.004718 (rank : 382)	θ value	8.99809 (rank : 295)
Query Neighborhood Hits	297	Target Neighborhood Hits	78	Shared Neighborhood Hits	5
SwissProt Accessions	Q8BLR5, Q3TE33, Q3TQF5, Q3UD59, Q3UFH9, Q80V44	Gene names	Psd4
Domain Architecture	No domain graphic available
Description	PH and SEC7 domain-containing protein 4 (Pleckstrin homology and SEC7 domain-containing protein 4).

FREM1_MOUSE
NC score	0.004142 (rank : 383)	θ value	6.88961 (rank : 266)
Query Neighborhood Hits	297	Target Neighborhood Hits	163	Shared Neighborhood Hits	4
SwissProt Accessions	Q684R7, Q5H8C2, Q5M7B3, Q8C732	Gene names	Frem1
Domain Architecture	No domain graphic available
Description	FRAS1-related extracellular matrix protein 1 precursor (Protein QBRICK).

NIPBL_HUMAN
NC score	0.003567 (rank : 384)	θ value	4.03905 (rank : 244)
Query Neighborhood Hits	297	Target Neighborhood Hits	1311	Shared Neighborhood Hits	18
SwissProt Accessions	Q6KC79, Q6KCD6, Q6N080, Q6ZT92, Q7Z2E6, Q8N4M5, Q9Y6Y3, Q9Y6Y4	Gene names	NIPBL, IDN3
Domain Architecture	No domain graphic available
Description	Nipped-B-like protein (Delangin) (SCC2 homolog).

SHAN1_HUMAN
NC score	0.003027 (rank : 385)	θ value	0.813845 (rank : 183)
Query Neighborhood Hits	297	Target Neighborhood Hits	1041	Shared Neighborhood Hits	22
SwissProt Accessions	Q9Y566, Q9NYW9	Gene names	SHANK1
Domain Architecture
Description	SH3 and multiple ankyrin repeat domains protein 1 (Shank1) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP).

HCN4_MOUSE
NC score	0.002995 (rank : 386)	θ value	2.36792 (rank : 210)
Query Neighborhood Hits	297	Target Neighborhood Hits	284	Shared Neighborhood Hits	8
SwissProt Accessions	O70507	Gene names	Hcn4, Bcng3
Domain Architecture
Description	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 (Brain cyclic nucleotide-gated channel 3) (BCNG-3).

ANR40_MOUSE
NC score	0.002169 (rank : 387)	θ value	6.88961 (rank : 263)
Query Neighborhood Hits	297	Target Neighborhood Hits	228	Shared Neighborhood Hits	4
SwissProt Accessions	Q5SUE8, Q8R595, Q9CU71	Gene names	Ankrd40
Domain Architecture	No domain graphic available
Description	Ankyrin repeat domain-containing protein 40.

SOX1_HUMAN
NC score	0.002167 (rank : 388)	θ value	8.99809 (rank : 297)
Query Neighborhood Hits	297	Target Neighborhood Hits	90	Shared Neighborhood Hits	3
SwissProt Accessions	O00570	Gene names	SOX1
Domain Architecture
Description	SOX-1 protein.

CHD8_HUMAN
NC score	0.001533 (rank : 389)	θ value	6.88961 (rank : 264)
Query Neighborhood Hits	297	Target Neighborhood Hits	235	Shared Neighborhood Hits	6
SwissProt Accessions	Q9HCK8, Q68DQ0, Q8N3Z9, Q8NCY4, Q8TBR9, Q96F26	Gene names	CHD8, HELSNF1, KIAA1564
Domain Architecture	No domain graphic available
Description	Chromodomain-helicase-DNA-binding protein 8 (EC 3.6.1.-) (ATP- dependent helicase CHD8) (CHD-8) (Helicase with SNF2 domain 1).

ROBO3_HUMAN
NC score	-0.002924 (rank : 390)	θ value	3.0926 (rank : 231)
Query Neighborhood Hits	297	Target Neighborhood Hits	570	Shared Neighborhood Hits	3
SwissProt Accessions	Q96MS0	Gene names	ROBO3
Domain Architecture
Description	Roundabout homolog 3 precursor (Roundabout-like protein 3).

GLIS3_MOUSE
NC score	-0.004146 (rank : 391)	θ value	3.0926 (rank : 222)
Query Neighborhood Hits	297	Target Neighborhood Hits	861	Shared Neighborhood Hits	10
SwissProt Accessions	Q6XP49, Q8BI60	Gene names	Glis3
Domain Architecture	No domain graphic available
Description	Zinc finger protein GLIS3 (GLI-similar 3).

SALL1_HUMAN
NC score	-0.005377 (rank : 392)	θ value	8.99809 (rank : 296)
Query Neighborhood Hits	297	Target Neighborhood Hits	821	Shared Neighborhood Hits	15
SwissProt Accessions	Q9NSC2, Q99881, Q9NSC3, Q9P1R0	Gene names	SALL1, SAL1
Domain Architecture
Description	Sal-like protein 1 (Zinc finger protein SALL1) (Spalt-like transcription factor 1) (HSal1).

GLIS3_HUMAN
NC score	-0.005731 (rank : 393)	θ value	6.88961 (rank : 267)
Query Neighborhood Hits	297	Target Neighborhood Hits	758	Shared Neighborhood Hits	7
SwissProt Accessions	Q8NEA6	Gene names	GLIS3, ZNF515
Domain Architecture	No domain graphic available
Description	Zinc finger protein GLIS3 (GLI-similar 3) (Zinc finger protein 515).

SLUG_MOUSE
NC score	-0.006081 (rank : 394)	θ value	6.88961 (rank : 276)
Query Neighborhood Hits	297	Target Neighborhood Hits	712	Shared Neighborhood Hits	9
SwissProt Accessions	P97469, O09096, Q9R211	Gene names	Snai2, Slug, Slugh
Domain Architecture	No domain graphic available
Description	Zinc finger protein SLUG (Neural crest transcription factor Slug) (Snail homolog 2).