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Network neighborhood for query Sequence : PAX9_HUMAN

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PAX9_HUMAN
SwissProt Accessions	P55771, Q99582, Q9UQR4	Gene names	PAX9
Domain Architecture
Description	Paired box protein Pax-9.
Rank Plots	Jump to hits sorted by θ Jump to hits sorted by NC score

Hits sorted by θ

PAX9_HUMAN
θ value	0 (rank : 1)	NC score	0.999962 (rank : 1)
Query Neighborhood Hits	92	Target Neighborhood Hits	92	Shared Neighborhood Hits	92
SwissProt Accessions	P55771, Q99582, Q9UQR4	Gene names	PAX9
Domain Architecture
Description	Paired box protein Pax-9.

PAX9_MOUSE
θ value	0 (rank : 2)	NC score	0.995455 (rank : 2)
Query Neighborhood Hits	92	Target Neighborhood Hits	67	Shared Neighborhood Hits	54
SwissProt Accessions	P47242	Gene names	Pax9, Pax-9
Domain Architecture
Description	Paired box protein Pax-9.

PAX1_HUMAN
θ value	5.10665e-112 (rank : 3)	NC score	0.979025 (rank : 4)
Query Neighborhood Hits	92	Target Neighborhood Hits	72	Shared Neighborhood Hits	22
SwissProt Accessions	P15863, Q642X9, Q6NTC0, Q9Y558	Gene names	PAX1, HUP48
Domain Architecture
Description	Paired box protein Pax-1 (HUP48).

PAX1_MOUSE
θ value	1.13764e-111 (rank : 4)	NC score	0.979832 (rank : 3)
Query Neighborhood Hits	92	Target Neighborhood Hits	69	Shared Neighborhood Hits	24
SwissProt Accessions	P09084, Q9R2B1	Gene names	Pax1, Pax-1
Domain Architecture
Description	Paired box protein Pax-1.

PAX2_HUMAN
θ value	5.02714e-51 (rank : 5)	NC score	0.927055 (rank : 9)
Query Neighborhood Hits	92	Target Neighborhood Hits	84	Shared Neighborhood Hits	20
SwissProt Accessions	Q02962, Q15105, Q15110, Q15837	Gene names	PAX2
Domain Architecture
Description	Paired box protein Pax-2.

PAX2_MOUSE
θ value	9.48078e-50 (rank : 6)	NC score	0.925973 (rank : 10)
Query Neighborhood Hits	92	Target Neighborhood Hits	86	Shared Neighborhood Hits	19
SwissProt Accessions	P32114	Gene names	Pax2, Pax-2
Domain Architecture
Description	Paired box protein Pax-2.

PAX5_HUMAN
θ value	1.61718e-49 (rank : 7)	NC score	0.932160 (rank : 6)
Query Neighborhood Hits	92	Target Neighborhood Hits	106	Shared Neighborhood Hits	22
SwissProt Accessions	Q02548, O75933	Gene names	PAX5
Domain Architecture
Description	Paired box protein Pax-5 (B-cell-specific transcription factor) (BSAP).

PAX5_MOUSE
θ value	1.61718e-49 (rank : 8)	NC score	0.932176 (rank : 5)
Query Neighborhood Hits	92	Target Neighborhood Hits	106	Shared Neighborhood Hits	22
SwissProt Accessions	Q02650	Gene names	Pax5, Pax-5
Domain Architecture
Description	Paired box protein Pax-5 (B-cell-specific transcription factor) (BSAP).

PAX8_HUMAN
θ value	2.1121e-49 (rank : 9)	NC score	0.930514 (rank : 7)
Query Neighborhood Hits	92	Target Neighborhood Hits	56	Shared Neighborhood Hits	18
SwissProt Accessions	Q06710, Q09155, Q16337, Q16338, Q16339, Q96J49	Gene names	PAX8
Domain Architecture
Description	Paired box protein Pax-8.

PAX8_MOUSE
θ value	2.1121e-49 (rank : 10)	NC score	0.928884 (rank : 8)
Query Neighborhood Hits	92	Target Neighborhood Hits	62	Shared Neighborhood Hits	18
SwissProt Accessions	Q00288, P97342	Gene names	Pax8, Pax-8
Domain Architecture
Description	Paired box protein Pax-8.

PAX3_HUMAN
θ value	1.04822e-48 (rank : 11)	NC score	0.566165 (rank : 17)
Query Neighborhood Hits	92	Target Neighborhood Hits	513	Shared Neighborhood Hits	29
SwissProt Accessions	P23760, Q16448	Gene names	PAX3, HUP2
Domain Architecture
Description	Paired box protein Pax-3 (HUP2).

PAX3_MOUSE
θ value	1.04822e-48 (rank : 12)	NC score	0.567325 (rank : 16)
Query Neighborhood Hits	92	Target Neighborhood Hits	478	Shared Neighborhood Hits	30
SwissProt Accessions	P24610, Q3UFQ9, Q8BRE7, Q9CXI6	Gene names	Pax3, Pax-3
Domain Architecture
Description	Paired box protein Pax-3.

PAX7_MOUSE
θ value	3.98324e-48 (rank : 13)	NC score	0.569893 (rank : 15)
Query Neighborhood Hits	92	Target Neighborhood Hits	422	Shared Neighborhood Hits	27
SwissProt Accessions	P47239, Q9ES16	Gene names	Pax7, Pax-7
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-7.

PAX7_HUMAN
θ value	4.40402e-47 (rank : 14)	NC score	0.565832 (rank : 18)
Query Neighborhood Hits	92	Target Neighborhood Hits	456	Shared Neighborhood Hits	28
SwissProt Accessions	P23759	Gene names	PAX7, HUP1
Domain Architecture
Description	Paired box protein Pax-7 (HUP1).

PAX6_HUMAN
θ value	1.41672e-45 (rank : 15)	NC score	0.591425 (rank : 11)
Query Neighborhood Hits	92	Target Neighborhood Hits	383	Shared Neighborhood Hits	26
SwissProt Accessions	P26367, Q6N006, Q99413	Gene names	PAX6, AN2
Domain Architecture
Description	Paired box protein Pax-6 (Oculorhombin) (Aniridia type II protein).

PAX6_MOUSE
θ value	1.41672e-45 (rank : 16)	NC score	0.591425 (rank : 12)
Query Neighborhood Hits	92	Target Neighborhood Hits	383	Shared Neighborhood Hits	26
SwissProt Accessions	P63015, P32117, P70601, Q62222, Q64037, Q8CEI5, Q8VDB5, Q921Q8	Gene names	Pax6, Pax-6, Sey
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-6 (Oculorhombin).

PAX4_MOUSE
θ value	1.73584e-35 (rank : 17)	NC score	0.589477 (rank : 13)
Query Neighborhood Hits	92	Target Neighborhood Hits	370	Shared Neighborhood Hits	24
SwissProt Accessions	P32115, P97341, Q9QUR1, Q9R091	Gene names	Pax4, Pax-4
Domain Architecture
Description	Paired box protein Pax-4.

PAX4_HUMAN
θ value	1.12514e-34 (rank : 18)	NC score	0.583674 (rank : 14)
Query Neighborhood Hits	92	Target Neighborhood Hits	367	Shared Neighborhood Hits	25
SwissProt Accessions	O43316, O95161, Q6B0H0	Gene names	PAX4
Domain Architecture
Description	Paired box protein Pax-4.

BARH2_HUMAN
θ value	0.000158464 (rank : 19)	NC score	0.130079 (rank : 65)
Query Neighborhood Hits	92	Target Neighborhood Hits	419	Shared Neighborhood Hits	18
SwissProt Accessions	Q9NY43, Q7Z4N7	Gene names	BARHL2
Domain Architecture
Description	BarH-like 2 homeobox protein.

BARH2_MOUSE
θ value	0.0431538 (rank : 20)	NC score	0.119480 (rank : 75)
Query Neighborhood Hits	92	Target Neighborhood Hits	397	Shared Neighborhood Hits	18
SwissProt Accessions	Q8VIB5, Q66L43	Gene names	Barhl2, Barh1, Mbh1
Domain Architecture	No domain graphic available
Description	BarH-like 2 homeobox protein (Bar-class homeodomain protein MBH1) (Homeobox protein B-H1).

BORG5_MOUSE
θ value	0.0431538 (rank : 21)	NC score	0.054247 (rank : 262)
Query Neighborhood Hits	92	Target Neighborhood Hits	61	Shared Neighborhood Hits	5
SwissProt Accessions	Q91W92, Q9D8M1	Gene names	Cdc42ep1, Borg5, Cep1
Domain Architecture	No domain graphic available
Description	Cdc42 effector protein 1 (Binder of Rho GTPases 5).

EP300_HUMAN
θ value	0.0961366 (rank : 22)	NC score	0.043928 (rank : 279)
Query Neighborhood Hits	92	Target Neighborhood Hits	821	Shared Neighborhood Hits	25
SwissProt Accessions	Q09472	Gene names	EP300, P300
Domain Architecture
Description	E1A-associated protein p300 (EC 2.3.1.48).

EP400_HUMAN
θ value	0.0961366 (rank : 23)	NC score	0.024924 (rank : 292)
Query Neighborhood Hits	92	Target Neighborhood Hits	556	Shared Neighborhood Hits	18
SwissProt Accessions	Q96L91, O15411, Q6P2F5, Q8N8Q7, Q8NE05, Q96JK7, Q9P230	Gene names	EP400, CAGH32, KIAA1498, KIAA1818, TNRC12
Domain Architecture	No domain graphic available
Description	E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa SWI2/SNF2-related protein) (Domino homolog) (hDomino) (CAG repeat protein 32) (Trinucleotide repeat-containing gene 12 protein).

NCA11_MOUSE
θ value	0.21417 (rank : 24)	NC score	0.007768 (rank : 338)
Query Neighborhood Hits	92	Target Neighborhood Hits	661	Shared Neighborhood Hits	13
SwissProt Accessions	P13595, Q61949	Gene names	Ncam1, Ncam
Domain Architecture
Description	Neural cell adhesion molecule 1, 180 kDa isoform precursor (N-CAM 180) (NCAM-180).

CIC_MOUSE
θ value	0.279714 (rank : 25)	NC score	0.018973 (rank : 301)
Query Neighborhood Hits	92	Target Neighborhood Hits	742	Shared Neighborhood Hits	25
SwissProt Accessions	Q924A2, Q6PDJ8, Q8CGE4, Q8CHH0, Q9CW61	Gene names	Cic, Kiaa0306
Domain Architecture	No domain graphic available
Description	Protein capicua homolog.

AUXI_HUMAN
θ value	0.365318 (rank : 26)	NC score	0.027646 (rank : 289)
Query Neighborhood Hits	92	Target Neighborhood Hits	99	Shared Neighborhood Hits	6
SwissProt Accessions	O75061, Q32M66, Q4G0K1, Q5T614, Q5T615	Gene names	DNAJC6, KIAA0473
Domain Architecture	No domain graphic available
Description	Putative tyrosine-protein phosphatase auxilin (EC 3.1.3.48) (DnaJ homolog subfamily C member 6).

CAC1H_HUMAN
θ value	0.365318 (rank : 27)	NC score	0.016360 (rank : 311)
Query Neighborhood Hits	92	Target Neighborhood Hits	307	Shared Neighborhood Hits	13
SwissProt Accessions	O95180, O95802, Q8WWI6, Q96QI6, Q96RZ9, Q9NYY4, Q9NYY5	Gene names	CACNA1H
Domain Architecture
Description	Voltage-dependent T-type calcium channel subunit alpha-1H (Voltage- gated calcium channel subunit alpha Cav3.2) (Low-voltage-activated calcium channel alpha1 3.2 subunit).

ZC3H5_MOUSE
θ value	0.365318 (rank : 28)	NC score	0.037772 (rank : 283)
Query Neighborhood Hits	92	Target Neighborhood Hits	136	Shared Neighborhood Hits	5
SwissProt Accessions	Q8BL48, Q8BVI6, Q99JZ8, Q99LL9	Gene names	Zc3h5, Kiaa1753, Zc3hdc5
Domain Architecture	No domain graphic available
Description	Zinc finger CCCH domain-containing protein 5.

SMRC1_HUMAN
θ value	0.47712 (rank : 29)	NC score	0.045948 (rank : 277)
Query Neighborhood Hits	92	Target Neighborhood Hits	375	Shared Neighborhood Hits	14
SwissProt Accessions	Q92922, Q6P172, Q8IWH2	Gene names	SMARCC1, BAF155
Domain Architecture	No domain graphic available
Description	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member 1 (SWI/SNF complex 155 kDa subunit) (BRG1-associated factor 155).

FOXD4_HUMAN
θ value	0.62314 (rank : 30)	NC score	0.011444 (rank : 327)
Query Neighborhood Hits	92	Target Neighborhood Hits	106	Shared Neighborhood Hits	5
SwissProt Accessions	Q12950, Q5VVK1, Q8WXT6	Gene names	FOXD4, FKHL9, FOXD4A, FREAC5
Domain Architecture
Description	Forkhead box protein D4 (Forkhead-related protein FKHL9) (Forkhead- related transcription factor 5) (FREAC-5) (Myeloid factor-alpha).

HCFC1_MOUSE
θ value	0.62314 (rank : 31)	NC score	0.021493 (rank : 296)
Query Neighborhood Hits	92	Target Neighborhood Hits	348	Shared Neighborhood Hits	17
SwissProt Accessions	Q61191, Q684R1, Q7TSB0, Q8C2D0, Q9QWH2	Gene names	Hcfc1
Domain Architecture	No domain graphic available
Description	Host cell factor (HCF) (HCF-1) (C1 factor) [Contains: HCF N-terminal chain 1; HCF N-terminal chain 2; HCF N-terminal chain 3; HCF N- terminal chain 4; HCF N-terminal chain 5; HCF N-terminal chain 6; HCF C-terminal chain 1; HCF C-terminal chain 2; HCF C-terminal chain 3; HCF C-terminal chain 4; HCF C-terminal chain 5; HCF C-terminal chain 6].

SMRC2_HUMAN
θ value	0.62314 (rank : 32)	NC score	0.041602 (rank : 281)
Query Neighborhood Hits	92	Target Neighborhood Hits	499	Shared Neighborhood Hits	14
SwissProt Accessions	Q8TAQ2, Q92923, Q96E12, Q96GY4	Gene names	SMARCC2, BAF170
Domain Architecture	No domain graphic available
Description	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member 2 (SWI/SNF complex 170 kDa subunit) (BRG1-associated factor 170).

TLE4_MOUSE
θ value	0.62314 (rank : 33)	NC score	0.015471 (rank : 314)
Query Neighborhood Hits	92	Target Neighborhood Hits	482	Shared Neighborhood Hits	13
SwissProt Accessions	Q62441, Q9JKQ9	Gene names	Tle4, Grg4
Domain Architecture
Description	Transducin-like enhancer protein 4 (Groucho-related protein 4) (Grg- 4).

CAC1A_MOUSE
θ value	0.813845 (rank : 34)	NC score	0.016412 (rank : 309)
Query Neighborhood Hits	92	Target Neighborhood Hits	267	Shared Neighborhood Hits	12
SwissProt Accessions	P97445	Gene names	Cacna1a, Cach4, Cacn3, Cacnl1a4, Ccha1a
Domain Architecture
Description	Voltage-dependent P/Q-type calcium channel subunit alpha-1A (Voltage- gated calcium channel subunit alpha Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI).

SMRC1_MOUSE
θ value	0.813845 (rank : 35)	NC score	0.040664 (rank : 282)
Query Neighborhood Hits	92	Target Neighborhood Hits	459	Shared Neighborhood Hits	11
SwissProt Accessions	P97496, Q7TS80, Q7TT29	Gene names	Smarcc1, Baf155, Srg3
Domain Architecture	No domain graphic available
Description	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member 1 (SWI/SNF complex 155 kDa subunit) (BRG1-associated factor 155) (SWI3-related protein).

TLE4_HUMAN
θ value	0.813845 (rank : 36)	NC score	0.014901 (rank : 316)
Query Neighborhood Hits	92	Target Neighborhood Hits	477	Shared Neighborhood Hits	13
SwissProt Accessions	Q04727, Q5T1Y2, Q9BZ07, Q9BZ08, Q9BZ09, Q9NSL3, Q9ULF9	Gene names	TLE4, KIAA1261
Domain Architecture
Description	Transducin-like enhancer protein 4.

ZC3H5_HUMAN
θ value	0.813845 (rank : 37)	NC score	0.035679 (rank : 285)
Query Neighborhood Hits	92	Target Neighborhood Hits	134	Shared Neighborhood Hits	5
SwissProt Accessions	Q9C0B0	Gene names	ZC3H5, KIAA1753, ZC3HDC5
Domain Architecture	No domain graphic available
Description	Zinc finger CCCH domain-containing protein 5.

SREC2_HUMAN
θ value	1.06291 (rank : 38)	NC score	0.005135 (rank : 340)
Query Neighborhood Hits	92	Target Neighborhood Hits	645	Shared Neighborhood Hits	11
SwissProt Accessions	Q96GP6, Q8IXF3, Q9BW74	Gene names	SCARF2, SREC2, SREPCR
Domain Architecture	No domain graphic available
Description	Scavenger receptor class F member 2 precursor (Scavenger receptor expressed by endothelial cells 2 protein) (SREC-II) (SRECRP-1).

DRAP1_HUMAN
θ value	1.38821 (rank : 39)	NC score	0.043088 (rank : 280)
Query Neighborhood Hits	92	Target Neighborhood Hits	51	Shared Neighborhood Hits	4
SwissProt Accessions	Q14919, Q13448	Gene names	DRAP1
Domain Architecture	No domain graphic available
Description	Dr1-associated corepressor (Dr1-associated protein 1) (Negative co- factor 2 alpha) (NC2 alpha).

ANR11_HUMAN
θ value	1.81305 (rank : 40)	NC score	0.009246 (rank : 334)
Query Neighborhood Hits	92	Target Neighborhood Hits	1289	Shared Neighborhood Hits	23
SwissProt Accessions	Q6UB99, Q6NTG1, Q6QMF8	Gene names	ANKRD11, ANCO1
Domain Architecture	No domain graphic available
Description	Ankyrin repeat domain-containing protein 11 (Ankyrin repeat-containing cofactor 1).

CAC1B_MOUSE
θ value	1.81305 (rank : 41)	NC score	0.014050 (rank : 317)
Query Neighborhood Hits	92	Target Neighborhood Hits	351	Shared Neighborhood Hits	13
SwissProt Accessions	O55017, Q60609	Gene names	Cacna1b, Cach5, Cacnl1a5, Cchn1a
Domain Architecture
Description	Voltage-dependent N-type calcium channel subunit alpha-1B (Voltage- gated calcium channel subunit alpha Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII).

FOXD2_HUMAN
θ value	1.81305 (rank : 42)	NC score	0.011108 (rank : 329)
Query Neighborhood Hits	92	Target Neighborhood Hits	143	Shared Neighborhood Hits	9
SwissProt Accessions	O60548	Gene names	FOXD2, FKHL17, FREAC9
Domain Architecture
Description	Forkhead box protein D2 (Forkhead-related protein FKHL17) (Forkhead- related transcription factor 9) (FREAC-9).

FOXN4_MOUSE
θ value	1.81305 (rank : 43)	NC score	0.017977 (rank : 305)
Query Neighborhood Hits	92	Target Neighborhood Hits	154	Shared Neighborhood Hits	8
SwissProt Accessions	Q8K3Q3, Q920C0	Gene names	Foxn4
Domain Architecture
Description	Forkhead box protein N4.

MILK1_MOUSE
θ value	1.81305 (rank : 44)	NC score	0.012376 (rank : 323)
Query Neighborhood Hits	92	Target Neighborhood Hits	788	Shared Neighborhood Hits	29
SwissProt Accessions	Q8BGT6, Q8BJ60	Gene names	Mirab13, D15Mit260, Kiaa1668
Domain Architecture
Description	Molecule interacting with Rab13 (MIRab13) (MICAL-like protein 1).

PO121_HUMAN
θ value	1.81305 (rank : 45)	NC score	0.024874 (rank : 293)
Query Neighborhood Hits	92	Target Neighborhood Hits	344	Shared Neighborhood Hits	17
SwissProt Accessions	Q9Y2N3, O75115, Q9Y4S7	Gene names	POM121, KIAA0618, NUP121
Domain Architecture	No domain graphic available
Description	Nuclear envelope pore membrane protein POM 121 (Pore membrane protein of 121 kDa) (P145).

3BP1_HUMAN
θ value	2.36792 (rank : 46)	NC score	0.016362 (rank : 310)
Query Neighborhood Hits	92	Target Neighborhood Hits	376	Shared Neighborhood Hits	16
SwissProt Accessions	Q9Y3L3, Q6IBZ2, Q6ZVL9, Q96HQ5, Q9NSQ9	Gene names	SH3BP1
Domain Architecture
Description	SH3 domain-binding protein 1 (3BP-1).

BCOR_MOUSE
θ value	2.36792 (rank : 47)	NC score	0.016462 (rank : 308)
Query Neighborhood Hits	92	Target Neighborhood Hits	521	Shared Neighborhood Hits	12
SwissProt Accessions	Q8CGN4, Q6PDK5, Q6ZPM3, Q8BKF5, Q8CGN1, Q8CGN2, Q8CGN3	Gene names	Bcor, Kiaa1575
Domain Architecture	No domain graphic available
Description	BCoR protein (BCL-6 corepressor).

BMP2K_MOUSE
θ value	2.36792 (rank : 48)	NC score	0.000523 (rank : 343)
Query Neighborhood Hits	92	Target Neighborhood Hits	874	Shared Neighborhood Hits	3
SwissProt Accessions	Q91Z96, Q8C8L7	Gene names	Bmp2k, Bike
Domain Architecture
Description	BMP-2-inducible protein kinase (EC 2.7.11.1) (BIKe).

CBP_MOUSE
θ value	2.36792 (rank : 49)	NC score	0.033977 (rank : 286)
Query Neighborhood Hits	92	Target Neighborhood Hits	1051	Shared Neighborhood Hits	41
SwissProt Accessions	P45481	Gene names	Crebbp, Cbp
Domain Architecture
Description	CREB-binding protein (EC 2.3.1.48).

DIAP1_HUMAN
θ value	2.36792 (rank : 50)	NC score	0.012025 (rank : 324)
Query Neighborhood Hits	92	Target Neighborhood Hits	784	Shared Neighborhood Hits	18
SwissProt Accessions	O60610, Q9UC76	Gene names	DIAPH1, DIAP1
Domain Architecture
Description	Protein diaphanous homolog 1 (Diaphanous-related formin-1) (DRF1).

EVL_HUMAN
θ value	2.36792 (rank : 51)	NC score	0.020507 (rank : 298)
Query Neighborhood Hits	92	Target Neighborhood Hits	260	Shared Neighborhood Hits	10
SwissProt Accessions	Q9UI08, O95884, Q7Z522, Q8TBV1, Q9UF25, Q9UIC2	Gene names	EVL, RNB6
Domain Architecture
Description	Ena/VASP-like protein (Ena/vasodilator-stimulated phosphoprotein- like).

PITM1_MOUSE
θ value	2.36792 (rank : 52)	NC score	0.019141 (rank : 300)
Query Neighborhood Hits	92	Target Neighborhood Hits	69	Shared Neighborhood Hits	7
SwissProt Accessions	O35954	Gene names	Pitpnm1, Dres9, Mpt1, Nir2, Pitpnm
Domain Architecture	No domain graphic available
Description	Membrane-associated phosphatidylinositol transfer protein 1 (Phosphatidylinositol transfer protein, membrane-associated 1) (PITPnm 1) (Mpt-1) (Pyk2 N-terminal domain-interacting receptor 2) (NIR-2) (Drosophila retinal degeneration B homolog 1) (RdgB1).

RPGF2_HUMAN
θ value	2.36792 (rank : 53)	NC score	0.009015 (rank : 335)
Query Neighborhood Hits	92	Target Neighborhood Hits	242	Shared Neighborhood Hits	3
SwissProt Accessions	Q9Y4G8	Gene names	RAPGEF2, KIAA0313, NRAPGEP, PDZGEF1
Domain Architecture	No domain graphic available
Description	Rap guanine nucleotide exchange factor 2 (Neural RAP guanine nucleotide exchange protein) (nRap GEP) (PDZ domain-containing guanine nucleotide exchange factor 1) (PDZ-GEF1) (RA-GEF).

BAT2_HUMAN
θ value	3.0926 (rank : 54)	NC score	0.020274 (rank : 299)
Query Neighborhood Hits	92	Target Neighborhood Hits	931	Shared Neighborhood Hits	28
SwissProt Accessions	P48634, O95875, Q5SQ29, Q5SQ30, Q5ST84, Q5STX6, Q5STX7, Q68DW9, Q6P9P7, Q6PIN1, Q96QC6	Gene names	BAT2, G2
Domain Architecture
Description	Large proline-rich protein BAT2 (HLA-B-associated transcript 2).

BCL9_HUMAN
θ value	3.0926 (rank : 55)	NC score	0.023425 (rank : 295)
Query Neighborhood Hits	92	Target Neighborhood Hits	1008	Shared Neighborhood Hits	41
SwissProt Accessions	O00512	Gene names	BCL9
Domain Architecture	No domain graphic available
Description	B-cell lymphoma 9 protein (Bcl-9) (Legless homolog).

CO039_MOUSE
θ value	3.0926 (rank : 56)	NC score	0.018273 (rank : 304)
Query Neighborhood Hits	92	Target Neighborhood Hits	445	Shared Neighborhood Hits	26
SwissProt Accessions	Q3TEI4, Q3TMF2, Q3U253, Q3UM75, Q9DA93	Gene names
Domain Architecture	No domain graphic available
Description	Uncharacterized protein C15orf39 homolog.

OLIG2_HUMAN
θ value	3.0926 (rank : 57)	NC score	0.008951 (rank : 336)
Query Neighborhood Hits	92	Target Neighborhood Hits	84	Shared Neighborhood Hits	2
SwissProt Accessions	Q13516, Q86X04, Q9NZ14	Gene names	OLIG2, BHLHB1, PRKCBP2, RACK17
Domain Architecture
Description	Oligodendrocyte transcription factor 2 (Oligo2) (Basic helix-loop- helix protein class B 1) (Protein kinase C-binding protein RACK17) (Protein kinase C-binding protein 2).

PITM1_HUMAN
θ value	3.0926 (rank : 58)	NC score	0.018450 (rank : 303)
Query Neighborhood Hits	92	Target Neighborhood Hits	129	Shared Neighborhood Hits	7
SwissProt Accessions	O00562, Q6T7X3, Q8TBN3, Q9BZ73	Gene names	PITPNM1, DRES9, NIR2, PITPNM
Domain Architecture	No domain graphic available
Description	Membrane-associated phosphatidylinositol transfer protein 1 (Phosphatidylinositol transfer protein, membrane-associated 1) (Pyk2 N-terminal domain-interacting receptor 2) (NIR-2) (Drosophila retinal degeneration B homolog).

PROP1_MOUSE
θ value	3.0926 (rank : 59)	NC score	0.150435 (rank : 44)
Query Neighborhood Hits	92	Target Neighborhood Hits	361	Shared Neighborhood Hits	15
SwissProt Accessions	P97458	Gene names	Prop1, Prop-1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

REPS2_MOUSE
θ value	3.0926 (rank : 60)	NC score	0.011688 (rank : 325)
Query Neighborhood Hits	92	Target Neighborhood Hits	102	Shared Neighborhood Hits	5
SwissProt Accessions	Q80XA6	Gene names	Reps2, Pob1
Domain Architecture
Description	RalBP1-associated Eps domain-containing protein 2 (RalBP1-interacting protein 2) (Partner of RalBP1).

TAF6_HUMAN
θ value	3.0926 (rank : 61)	NC score	0.044988 (rank : 278)
Query Neighborhood Hits	92	Target Neighborhood Hits	127	Shared Neighborhood Hits	12
SwissProt Accessions	P49848	Gene names	TAF6, TAF2E, TAFII70
Domain Architecture
Description	Transcription initiation factor TFIID subunit 6 (Transcription initiation factor TFIID 70 kDa subunit) (TAF(II)70) (TAFII-70) (TAFII- 80) (TAFII80).

CBP_HUMAN
θ value	4.03905 (rank : 62)	NC score	0.026176 (rank : 291)
Query Neighborhood Hits	92	Target Neighborhood Hits	941	Shared Neighborhood Hits	34
SwissProt Accessions	Q92793, O00147, Q16376	Gene names	CREBBP, CBP
Domain Architecture
Description	CREB-binding protein (EC 2.3.1.48).

CN032_HUMAN
θ value	4.03905 (rank : 63)	NC score	0.036918 (rank : 284)
Query Neighborhood Hits	92	Target Neighborhood Hits	267	Shared Neighborhood Hits	18
SwissProt Accessions	Q8NDC0, Q96BG5	Gene names	C14orf32
Domain Architecture	No domain graphic available
Description	Protein C14orf32.

MLL2_HUMAN
θ value	4.03905 (rank : 64)	NC score	0.011664 (rank : 326)
Query Neighborhood Hits	92	Target Neighborhood Hits	1788	Shared Neighborhood Hits	37
SwissProt Accessions	O14686, O14687	Gene names	MLL2, ALR
Domain Architecture
Description	Myeloid/lymphoid or mixed-lineage leukemia protein 2 (ALL1-related protein).

MUC2_HUMAN
θ value	4.03905 (rank : 65)	NC score	0.031255 (rank : 287)
Query Neighborhood Hits	92	Target Neighborhood Hits	906	Shared Neighborhood Hits	24
SwissProt Accessions	Q02817, Q14878	Gene names	MUC2, SMUC
Domain Architecture
Description	Mucin-2 precursor (Intestinal mucin-2).

PHF2_HUMAN
θ value	4.03905 (rank : 66)	NC score	0.006974 (rank : 339)
Query Neighborhood Hits	92	Target Neighborhood Hits	208	Shared Neighborhood Hits	7
SwissProt Accessions	O75151, Q8N3K2, Q9Y6N4	Gene names	PHF2, KIAA0662
Domain Architecture
Description	PHD finger protein 2 (GRC5).

PRR12_HUMAN
θ value	4.03905 (rank : 67)	NC score	0.026409 (rank : 290)
Query Neighborhood Hits	92	Target Neighborhood Hits	460	Shared Neighborhood Hits	19
SwissProt Accessions	Q9ULL5, Q8N4J6	Gene names	PRR12, KIAA1205
Domain Architecture	No domain graphic available
Description	Proline-rich protein 12.

SOCS3_HUMAN
θ value	4.03905 (rank : 68)	NC score	0.016063 (rank : 312)
Query Neighborhood Hits	92	Target Neighborhood Hits	77	Shared Neighborhood Hits	3
SwissProt Accessions	O14543, O14509	Gene names	SOCS3, CIS3, SSI3
Domain Architecture
Description	Suppressor of cytokine signaling 3 (SOCS-3) (Cytokine-inducible SH2 protein 3) (CIS-3) (STAT-induced STAT inhibitor 3) (SSI-3).

SRBP1_HUMAN
θ value	4.03905 (rank : 69)	NC score	0.016849 (rank : 306)
Query Neighborhood Hits	92	Target Neighborhood Hits	225	Shared Neighborhood Hits	12
SwissProt Accessions	P36956, Q16062	Gene names	SREBF1, SREBP1
Domain Architecture
Description	Sterol regulatory element-binding protein 1 (SREBP-1) (Sterol regulatory element-binding transcription factor 1).

AFF1_HUMAN
θ value	5.27518 (rank : 70)	NC score	0.012693 (rank : 320)
Query Neighborhood Hits	92	Target Neighborhood Hits	506	Shared Neighborhood Hits	11
SwissProt Accessions	P51825	Gene names	AFF1, AF4, FEL, MLLT2
Domain Architecture
Description	AF4/FMR2 family member 1 (Protein AF-4) (Proto-oncogene AF4) (Protein FEL).

CITE4_MOUSE
θ value	5.27518 (rank : 71)	NC score	0.014048 (rank : 318)
Query Neighborhood Hits	92	Target Neighborhood Hits	73	Shared Neighborhood Hits	6
SwissProt Accessions	Q9WUL8, Q66JX0, Q8R176, Q9CZV4	Gene names	Cited4, Mrg2
Domain Architecture	No domain graphic available
Description	Cbp/p300-interacting transactivator 4 (MSG1-related protein 2) (MRG- 2).

FOXL2_MOUSE
θ value	5.27518 (rank : 72)	NC score	0.010076 (rank : 332)
Query Neighborhood Hits	92	Target Neighborhood Hits	151	Shared Neighborhood Hits	10
SwissProt Accessions	O88470, Q8K3X9	Gene names	Foxl2, Pfrk
Domain Architecture	No domain graphic available
Description	Forkhead box protein L2 (Pituitary forkhead factor) (P-Frk).

SCG2_MOUSE
θ value	5.27518 (rank : 73)	NC score	0.010985 (rank : 330)
Query Neighborhood Hits	92	Target Neighborhood Hits	74	Shared Neighborhood Hits	2
SwissProt Accessions	Q03517, Q80Y79, Q9CW80	Gene names	Scg2, Chgc, Scg-2
Domain Architecture
Description	Secretogranin-2 precursor (Secretogranin II) (SgII) (Chromogranin C) [Contains: Secretoneurin (SN)].

WASF3_MOUSE
θ value	5.27518 (rank : 74)	NC score	0.012552 (rank : 322)
Query Neighborhood Hits	92	Target Neighborhood Hits	188	Shared Neighborhood Hits	9
SwissProt Accessions	Q8VHI6	Gene names	Wasf3, Wave3
Domain Architecture	No domain graphic available
Description	Wiskott-Aldrich syndrome protein family member 3 (WASP-family protein member 3) (Protein WAVE-3).

ZN668_MOUSE
θ value	5.27518 (rank : 75)	NC score	-0.003664 (rank : 344)
Query Neighborhood Hits	92	Target Neighborhood Hits	763	Shared Neighborhood Hits	2
SwissProt Accessions	Q8K2R5, Q3TEM2, Q3U7Y5, Q8C8B7	Gene names	Znf668, Zfp668
Domain Architecture	No domain graphic available
Description	Zinc finger protein 668.

BCAR1_HUMAN
θ value	6.88961 (rank : 76)	NC score	0.012907 (rank : 319)
Query Neighborhood Hits	92	Target Neighborhood Hits	554	Shared Neighborhood Hits	22
SwissProt Accessions	P56945	Gene names	BCAR1, CAS, CRKAS
Domain Architecture
Description	Breast cancer anti-estrogen resistance protein 1 (CRK-associated substrate) (p130cas).

CDT1_MOUSE
θ value	6.88961 (rank : 77)	NC score	0.010097 (rank : 331)
Query Neighborhood Hits	92	Target Neighborhood Hits	72	Shared Neighborhood Hits	3
SwissProt Accessions	Q8R4E9, Q8BUQ1, Q8BX29, Q8R3V0, Q8R4E8	Gene names	Cdt1, Ris2
Domain Architecture	No domain graphic available
Description	DNA replication factor Cdt1 (Double parked homolog) (DUP) (Retroviral insertion site 2 protein).

DEAF1_HUMAN
θ value	6.88961 (rank : 78)	NC score	0.012647 (rank : 321)
Query Neighborhood Hits	92	Target Neighborhood Hits	67	Shared Neighborhood Hits	3
SwissProt Accessions	O75398, O15152, O75399, O75510, O75511, O75512, O75513, Q9UET1	Gene names	DEAF1, SPN, ZMYND5
Domain Architecture
Description	Deformed epidermal autoregulatory factor 1 homolog (Nuclear DEAF-1- related transcriptional regulator) (NUDR) (Suppressin) (Zinc finger MYND domain-containing protein 5).

DSRAD_HUMAN
θ value	6.88961 (rank : 79)	NC score	0.011381 (rank : 328)
Query Neighborhood Hits	92	Target Neighborhood Hits	58	Shared Neighborhood Hits	3
SwissProt Accessions	P55265, O15223, O43859, O43860, Q9BYM3, Q9BYM4	Gene names	ADAR, ADAR1, DSRAD, IFI4
Domain Architecture
Description	Double-stranded RNA-specific adenosine deaminase (EC 3.5.4.-) (DRADA) (136 kDa double-stranded RNA-binding protein) (P136) (K88DSRBP) (Interferon-inducible protein 4) (IFI-4 protein).

IRS2_HUMAN
θ value	6.88961 (rank : 80)	NC score	0.015730 (rank : 313)
Query Neighborhood Hits	92	Target Neighborhood Hits	262	Shared Neighborhood Hits	13
SwissProt Accessions	Q9Y4H2, Q96RR2, Q9BZG0, Q9Y6I5	Gene names	IRS2
Domain Architecture
Description	Insulin receptor substrate 2 (IRS-2).

PO6F2_MOUSE
θ value	6.88961 (rank : 81)	NC score	0.070448 (rank : 191)
Query Neighborhood Hits	92	Target Neighborhood Hits	639	Shared Neighborhood Hits	28
SwissProt Accessions	Q8BJI4	Gene names	Pou6f2
Domain Architecture	No domain graphic available
Description	POU domain, class 6, transcription factor 2.

BSN_MOUSE
θ value	8.99809 (rank : 82)	NC score	0.018612 (rank : 302)
Query Neighborhood Hits	92	Target Neighborhood Hits	2057	Shared Neighborhood Hits	52
SwissProt Accessions	O88737, Q6ZQB5	Gene names	Bsn, Kiaa0434
Domain Architecture	No domain graphic available
Description	Protein bassoon.

CASL_HUMAN
θ value	8.99809 (rank : 83)	NC score	0.010066 (rank : 333)
Query Neighborhood Hits	92	Target Neighborhood Hits	259	Shared Neighborhood Hits	5
SwissProt Accessions	Q14511	Gene names	NEDD9, CASL
Domain Architecture
Description	Enhancer of filamentation 1 (HEF1) (CRK-associated substrate-related protein) (CAS-L) (CasL) (p105) (Protein NEDD9) (NY-REN-12 antigen).

CP007_HUMAN
θ value	8.99809 (rank : 84)	NC score	0.008386 (rank : 337)
Query Neighborhood Hits	92	Target Neighborhood Hits	85	Shared Neighborhood Hits	3
SwissProt Accessions	Q9Y2B5	Gene names	C16orf7, ATPBL
Domain Architecture	No domain graphic available
Description	Uncharacterized protein C16orf7 (Protein ATP-BL).

DLX3_HUMAN
θ value	8.99809 (rank : 85)	NC score	0.080887 (rank : 148)
Query Neighborhood Hits	92	Target Neighborhood Hits	369	Shared Neighborhood Hits	19
SwissProt Accessions	O60479	Gene names	DLX3
Domain Architecture
Description	Homeobox protein DLX-3.

GGA3_HUMAN
θ value	8.99809 (rank : 86)	NC score	0.004963 (rank : 341)
Query Neighborhood Hits	92	Target Neighborhood Hits	127	Shared Neighborhood Hits	8
SwissProt Accessions	Q9NZ52, Q15017, Q6IS16, Q9UJY3	Gene names	GGA3, KIAA0154
Domain Architecture
Description	ADP-ribosylation factor-binding protein GGA3 (Golgi-localized, gamma ear-containing, ARF-binding protein 3).

HCFC1_HUMAN
θ value	8.99809 (rank : 87)	NC score	0.024482 (rank : 294)
Query Neighborhood Hits	92	Target Neighborhood Hits	331	Shared Neighborhood Hits	16
SwissProt Accessions	P51610, Q6P4G5	Gene names	HCFC1, HCF1
Domain Architecture	No domain graphic available
Description	Host cell factor (HCF) (HCF-1) (C1 factor) (VP16 accessory protein) (VCAF) (CFF) [Contains: HCF N-terminal chain 1; HCF N-terminal chain 2; HCF N-terminal chain 3; HCF N-terminal chain 4; HCF N-terminal chain 5; HCF N-terminal chain 6; HCF C-terminal chain 1; HCF C- terminal chain 2; HCF C-terminal chain 3; HCF C-terminal chain 4; HCF C-terminal chain 5; HCF C-terminal chain 6].

IRX3_HUMAN
θ value	8.99809 (rank : 88)	NC score	0.020531 (rank : 297)
Query Neighborhood Hits	92	Target Neighborhood Hits	342	Shared Neighborhood Hits	15
SwissProt Accessions	P78415, Q7Z4A4, Q7Z4A5, Q8IVC6	Gene names	IRX3, IRXB1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

MEGF8_MOUSE
θ value	8.99809 (rank : 89)	NC score	0.003118 (rank : 342)
Query Neighborhood Hits	92	Target Neighborhood Hits	520	Shared Neighborhood Hits	6
SwissProt Accessions	P60882, Q80TR3, Q80V41, Q8BMN9, Q8JZW7, Q8K0J3	Gene names	Megf8, Egfl4
Domain Architecture
Description	Multiple epidermal growth factor-like domains 8 (EGF-like domain- containing protein 4) (Multiple EGF-like domain protein 4).

SGIP1_MOUSE
θ value	8.99809 (rank : 90)	NC score	0.015314 (rank : 315)
Query Neighborhood Hits	92	Target Neighborhood Hits	180	Shared Neighborhood Hits	11
SwissProt Accessions	Q8VD37, Q3UFU3, Q3UGA0, Q8BXX4, Q8C034, Q9CXT2	Gene names	Sgip1
Domain Architecture	No domain graphic available
Description	SH3-containing GRB2-like protein 3-interacting protein 1 (Endophilin- 3-interacting protein).

SMRC2_MOUSE
θ value	8.99809 (rank : 91)	NC score	0.030954 (rank : 288)
Query Neighborhood Hits	92	Target Neighborhood Hits	487	Shared Neighborhood Hits	14
SwissProt Accessions	Q6PDG5, Q6P6P3	Gene names	Smarcc2, Baf170
Domain Architecture	No domain graphic available
Description	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member 2 (SWI/SNF complex 170 kDa subunit) (BRG1-associated factor 170).

YAP1_HUMAN
θ value	8.99809 (rank : 92)	NC score	0.016799 (rank : 307)
Query Neighborhood Hits	92	Target Neighborhood Hits	173	Shared Neighborhood Hits	9
SwissProt Accessions	P46937	Gene names	YAP1, YAP65
Domain Architecture
Description	65 kDa Yes-associated protein (YAP65).

ALX3_HUMAN
θ value	θ > 10 (rank : 93)	NC score	0.151425 (rank : 42)
Query Neighborhood Hits	92	Target Neighborhood Hits	380	Shared Neighborhood Hits	21
SwissProt Accessions	O95076, O95075	Gene names	ALX3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

ALX3_MOUSE
θ value	θ > 10 (rank : 94)	NC score	0.153486 (rank : 37)
Query Neighborhood Hits	92	Target Neighborhood Hits	386	Shared Neighborhood Hits	21
SwissProt Accessions	O70137	Gene names	Alx3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

ALX4_HUMAN
θ value	θ > 10 (rank : 95)	NC score	0.156297 (rank : 33)
Query Neighborhood Hits	92	Target Neighborhood Hits	394	Shared Neighborhood Hits	21
SwissProt Accessions	Q9H161, Q96JN7, Q9H198, Q9HAY9	Gene names	ALX4, KIAA1788
Domain Architecture
Description	Homeobox protein aristaless-like 4.

ALX4_MOUSE
θ value	θ > 10 (rank : 96)	NC score	0.153735 (rank : 36)
Query Neighborhood Hits	92	Target Neighborhood Hits	369	Shared Neighborhood Hits	21
SwissProt Accessions	O35137	Gene names	Alx4
Domain Architecture
Description	Homeobox protein aristaless-like 4 (ALX-4).

ARX_HUMAN
θ value	θ > 10 (rank : 97)	NC score	0.157403 (rank : 31)
Query Neighborhood Hits	92	Target Neighborhood Hits	401	Shared Neighborhood Hits	20
SwissProt Accessions	Q96QS3	Gene names	ARX
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

ARX_MOUSE
θ value	θ > 10 (rank : 98)	NC score	0.156455 (rank : 32)
Query Neighborhood Hits	92	Target Neighborhood Hits	398	Shared Neighborhood Hits	19
SwissProt Accessions	O35085, Q9QYT4	Gene names	Arx
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

BARH1_HUMAN
θ value	θ > 10 (rank : 99)	NC score	0.107348 (rank : 78)
Query Neighborhood Hits	92	Target Neighborhood Hits	373	Shared Neighborhood Hits	15
SwissProt Accessions	Q9BZE3, Q9NY88	Gene names	BARHL1
Domain Architecture
Description	BarH-like 1 homeobox protein.

BARH1_MOUSE
θ value	θ > 10 (rank : 100)	NC score	0.103167 (rank : 80)
Query Neighborhood Hits	92	Target Neighborhood Hits	350	Shared Neighborhood Hits	13
SwissProt Accessions	P63157, Q9JK26	Gene names	Barhl1, Bhx1, Mbh2
Domain Architecture	No domain graphic available
Description	BarH-like 1 homeobox protein (Bar-class homeodomain protein MBH2) (BarH-related homeobox protein 1).

BARX1_HUMAN
θ value	θ > 10 (rank : 101)	NC score	0.083675 (rank : 128)
Query Neighborhood Hits	92	Target Neighborhood Hits	326	Shared Neighborhood Hits	13
SwissProt Accessions	Q9HBU1	Gene names	BARX1
Domain Architecture
Description	Homeobox protein BarH-like 1.

BARX1_MOUSE
θ value	θ > 10 (rank : 102)	NC score	0.082349 (rank : 140)
Query Neighborhood Hits	92	Target Neighborhood Hits	324	Shared Neighborhood Hits	13
SwissProt Accessions	Q9ER42, O09066, P70159, Q9ERV2	Gene names	Barx1
Domain Architecture
Description	Homeobox protein BarH-like 1.

BARX2_HUMAN
θ value	θ > 10 (rank : 103)	NC score	0.092748 (rank : 94)
Query Neighborhood Hits	92	Target Neighborhood Hits	387	Shared Neighborhood Hits	14
SwissProt Accessions	Q9UMQ3, O43518	Gene names	BARX2
Domain Architecture
Description	Homeobox protein BarH-like 2.

BARX2_MOUSE
θ value	θ > 10 (rank : 104)	NC score	0.092345 (rank : 95)
Query Neighborhood Hits	92	Target Neighborhood Hits	335	Shared Neighborhood Hits	14
SwissProt Accessions	O08686	Gene names	Barx2
Domain Architecture
Description	Homeobox protein BarH-like 2.

BSH_MOUSE
θ value	θ > 10 (rank : 105)	NC score	0.082420 (rank : 138)
Query Neighborhood Hits	92	Target Neighborhood Hits	349	Shared Neighborhood Hits	15
SwissProt Accessions	Q810B3	Gene names	Bsx
Domain Architecture	No domain graphic available
Description	Brain-specific homeobox protein homolog.

CART1_HUMAN
θ value	θ > 10 (rank : 106)	NC score	0.151753 (rank : 40)
Query Neighborhood Hits	92	Target Neighborhood Hits	348	Shared Neighborhood Hits	19
SwissProt Accessions	Q15699, Q546C8, Q96FH4	Gene names	CART1
Domain Architecture
Description	Cartilage homeoprotein 1 (CART-1).

CART1_MOUSE
θ value	θ > 10 (rank : 107)	NC score	0.151127 (rank : 43)
Query Neighborhood Hits	92	Target Neighborhood Hits	344	Shared Neighborhood Hits	19
SwissProt Accessions	Q8C8B0, Q8C370	Gene names	Cart1
Domain Architecture	No domain graphic available
Description	Cartilage homeoprotein 1 (CART-1).

CDX1_HUMAN
θ value	θ > 10 (rank : 108)	NC score	0.076796 (rank : 167)
Query Neighborhood Hits	92	Target Neighborhood Hits	382	Shared Neighborhood Hits	14
SwissProt Accessions	P47902, Q4VAU4, Q9NYK8	Gene names	CDX1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

CDX1_MOUSE
θ value	θ > 10 (rank : 109)	NC score	0.077020 (rank : 166)
Query Neighborhood Hits	92	Target Neighborhood Hits	379	Shared Neighborhood Hits	15
SwissProt Accessions	P18111, Q8VCF7	Gene names	Cdx1, Cdx-1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

CDX2_HUMAN
θ value	θ > 10 (rank : 110)	NC score	0.075219 (rank : 170)
Query Neighborhood Hits	92	Target Neighborhood Hits	330	Shared Neighborhood Hits	14
SwissProt Accessions	Q99626, O00503, Q969L8	Gene names	CDX2, CDX3
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2) (CDX-3).

CDX2_MOUSE
θ value	θ > 10 (rank : 111)	NC score	0.085042 (rank : 122)
Query Neighborhood Hits	92	Target Neighborhood Hits	336	Shared Neighborhood Hits	15
SwissProt Accessions	P43241	Gene names	Cdx2, Cdx-2
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2).

CDX4_HUMAN
θ value	θ > 10 (rank : 112)	NC score	0.072270 (rank : 179)
Query Neighborhood Hits	92	Target Neighborhood Hits	366	Shared Neighborhood Hits	15
SwissProt Accessions	O14627, Q5JS20	Gene names	CDX4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

CDX4_MOUSE
θ value	θ > 10 (rank : 113)	NC score	0.071726 (rank : 184)
Query Neighborhood Hits	92	Target Neighborhood Hits	378	Shared Neighborhood Hits	17
SwissProt Accessions	Q07424	Gene names	Cdx4, Cdx-4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

CHX10_HUMAN
θ value	θ > 10 (rank : 114)	NC score	0.162502 (rank : 27)
Query Neighborhood Hits	92	Target Neighborhood Hits	340	Shared Neighborhood Hits	20
SwissProt Accessions	P58304	Gene names	CHX10, VSX2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

CHX10_MOUSE
θ value	θ > 10 (rank : 115)	NC score	0.164238 (rank : 25)
Query Neighborhood Hits	92	Target Neighborhood Hits	340	Shared Neighborhood Hits	20
SwissProt Accessions	Q61412	Gene names	Chx10, Vsx2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

CRX_HUMAN
θ value	θ > 10 (rank : 116)	NC score	0.144148 (rank : 51)
Query Neighborhood Hits	92	Target Neighborhood Hits	360	Shared Neighborhood Hits	18
SwissProt Accessions	O43186	Gene names	CRX, CORD2
Domain Architecture
Description	Cone-rod homeobox protein.

CRX_MOUSE
θ value	θ > 10 (rank : 117)	NC score	0.147906 (rank : 46)
Query Neighborhood Hits	92	Target Neighborhood Hits	359	Shared Neighborhood Hits	20
SwissProt Accessions	O54751	Gene names	Crx
Domain Architecture
Description	Cone-rod homeobox protein.

DBX1_MOUSE
θ value	θ > 10 (rank : 118)	NC score	0.087462 (rank : 113)
Query Neighborhood Hits	92	Target Neighborhood Hits	346	Shared Neighborhood Hits	13
SwissProt Accessions	P52950	Gene names	Dbx1, Dbx
Domain Architecture
Description	Homeobox protein DBX1.

DLX1_HUMAN
θ value	θ > 10 (rank : 119)	NC score	0.082495 (rank : 137)
Query Neighborhood Hits	92	Target Neighborhood Hits	343	Shared Neighborhood Hits	14
SwissProt Accessions	P56177, Q53ZU4, Q8IYB2	Gene names	DLX1
Domain Architecture
Description	Homeobox protein DLX-1.

DLX1_MOUSE
θ value	θ > 10 (rank : 120)	NC score	0.083103 (rank : 132)
Query Neighborhood Hits	92	Target Neighborhood Hits	343	Shared Neighborhood Hits	14
SwissProt Accessions	Q64317	Gene names	Dlx1
Domain Architecture
Description	Homeobox protein DLX-1.

DLX2_HUMAN
θ value	θ > 10 (rank : 121)	NC score	0.088265 (rank : 107)
Query Neighborhood Hits	92	Target Neighborhood Hits	355	Shared Neighborhood Hits	17
SwissProt Accessions	Q07687	Gene names	DLX2
Domain Architecture
Description	Homeobox protein DLX-2.

DLX2_MOUSE
θ value	θ > 10 (rank : 122)	NC score	0.087434 (rank : 114)
Query Neighborhood Hits	92	Target Neighborhood Hits	352	Shared Neighborhood Hits	14
SwissProt Accessions	P40764	Gene names	Dlx2, Tes-1, Tes1
Domain Architecture
Description	Homeobox protein DLX-2 (Homeobox protein TES-1).

DLX3_MOUSE
θ value	θ > 10 (rank : 123)	NC score	0.078651 (rank : 158)
Query Neighborhood Hits	92	Target Neighborhood Hits	367	Shared Neighborhood Hits	17
SwissProt Accessions	Q64205	Gene names	Dlx3
Domain Architecture
Description	Homeobox protein DLX-3.

DLX4_HUMAN
θ value	θ > 10 (rank : 124)	NC score	0.078958 (rank : 156)
Query Neighborhood Hits	92	Target Neighborhood Hits	350	Shared Neighborhood Hits	13
SwissProt Accessions	Q92988, O60480, Q13265, Q6PJK0, Q9HBE0	Gene names	DLX4, BP1, DLX7, DLX8
Domain Architecture	No domain graphic available
Description	Homeobox protein DLX-4 (DLX-7) (DLX-8) (Beta protein 1).

DLX4_MOUSE
θ value	θ > 10 (rank : 125)	NC score	0.078752 (rank : 157)
Query Neighborhood Hits	92	Target Neighborhood Hits	352	Shared Neighborhood Hits	13
SwissProt Accessions	P70436, Q3UM51, Q8R4I3	Gene names	Dlx4, Dlx7
Domain Architecture
Description	Homeobox protein DLX-4 (DLX-7).

DLX5_HUMAN
θ value	θ > 10 (rank : 126)	NC score	0.080469 (rank : 150)
Query Neighborhood Hits	92	Target Neighborhood Hits	405	Shared Neighborhood Hits	18
SwissProt Accessions	P56178, Q9UPL1	Gene names	DLX5
Domain Architecture
Description	Homeobox protein DLX-5.

DLX5_MOUSE
θ value	θ > 10 (rank : 127)	NC score	0.077799 (rank : 164)
Query Neighborhood Hits	92	Target Neighborhood Hits	434	Shared Neighborhood Hits	18
SwissProt Accessions	P70396, O54876, O54877, O54878, Q9JJ45	Gene names	Dlx5
Domain Architecture
Description	Homeobox protein DLX-5.

DLX6_HUMAN
θ value	θ > 10 (rank : 128)	NC score	0.078132 (rank : 162)
Query Neighborhood Hits	92	Target Neighborhood Hits	341	Shared Neighborhood Hits	14
SwissProt Accessions	P56179, Q3ZAR6, Q9UPL2	Gene names	DLX6
Domain Architecture
Description	Homeobox protein DLX-6.

DUX1_HUMAN
θ value	θ > 10 (rank : 129)	NC score	0.125176 (rank : 72)
Query Neighborhood Hits	92	Target Neighborhood Hits	330	Shared Neighborhood Hits	13
SwissProt Accessions	O43812	Gene names	DUX1
Domain Architecture	No domain graphic available
Description	Double homeobox protein 1.

DUX2_HUMAN
θ value	θ > 10 (rank : 130)	NC score	0.159080 (rank : 30)
Query Neighborhood Hits	92	Target Neighborhood Hits	173	Shared Neighborhood Hits	13
SwissProt Accessions	O75505	Gene names	DUX2
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 2.

DUX3_HUMAN
θ value	θ > 10 (rank : 131)	NC score	0.120390 (rank : 74)
Query Neighborhood Hits	92	Target Neighborhood Hits	312	Shared Neighborhood Hits	13
SwissProt Accessions	Q96PT4, Q9UND2	Gene names	DUX3
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 3.

DUX4_HUMAN
θ value	θ > 10 (rank : 132)	NC score	0.127393 (rank : 69)
Query Neighborhood Hits	92	Target Neighborhood Hits	403	Shared Neighborhood Hits	15
SwissProt Accessions	Q9UBX2	Gene names	DUX4, DUX10
Domain Architecture	No domain graphic available
Description	Double homeobox protein 4 (Double homeobox protein 10) (Double homeobox protein 4/10).

DUX5_HUMAN
θ value	θ > 10 (rank : 133)	NC score	0.124142 (rank : 73)
Query Neighborhood Hits	92	Target Neighborhood Hits	330	Shared Neighborhood Hits	13
SwissProt Accessions	Q96PT3	Gene names	DUX5
Domain Architecture	No domain graphic available
Description	Double homeobox protein 5.

EMX1_HUMAN
θ value	θ > 10 (rank : 134)	NC score	0.096838 (rank : 81)
Query Neighborhood Hits	92	Target Neighborhood Hits	336	Shared Neighborhood Hits	14
SwissProt Accessions	Q04741, Q86XB0	Gene names	EMX1
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty spiracles- like protein 1).

EMX2_HUMAN
θ value	θ > 10 (rank : 135)	NC score	0.095208 (rank : 86)
Query Neighborhood Hits	92	Target Neighborhood Hits	341	Shared Neighborhood Hits	14
SwissProt Accessions	Q04743, Q96NN8, Q9BQF4	Gene names	EMX2
Domain Architecture
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

EMX2_MOUSE
θ value	θ > 10 (rank : 136)	NC score	0.095349 (rank : 85)
Query Neighborhood Hits	92	Target Neighborhood Hits	340	Shared Neighborhood Hits	15
SwissProt Accessions	Q04744, Q80UE7	Gene names	Emx2, Emx-2
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

ESX1L_HUMAN
θ value	θ > 10 (rank : 137)	NC score	0.131062 (rank : 64)
Query Neighborhood Hits	92	Target Neighborhood Hits	498	Shared Neighborhood Hits	19
SwissProt Accessions	Q8N693, Q7Z6K7	Gene names	ESX1L, ESX1R
Domain Architecture
Description	Extraembryonic, spermatogenesis, homeobox 1-like protein.

EVX1_HUMAN
θ value	θ > 10 (rank : 138)	NC score	0.087357 (rank : 115)
Query Neighborhood Hits	92	Target Neighborhood Hits	349	Shared Neighborhood Hits	13
SwissProt Accessions	P49640	Gene names	EVX1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

EVX1_MOUSE
θ value	θ > 10 (rank : 139)	NC score	0.087673 (rank : 112)
Query Neighborhood Hits	92	Target Neighborhood Hits	350	Shared Neighborhood Hits	14
SwissProt Accessions	P23683	Gene names	Evx1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

EVX2_HUMAN
θ value	θ > 10 (rank : 140)	NC score	0.086035 (rank : 119)
Query Neighborhood Hits	92	Target Neighborhood Hits	325	Shared Neighborhood Hits	13
SwissProt Accessions	Q03828	Gene names	EVX2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

EVX2_MOUSE
θ value	θ > 10 (rank : 141)	NC score	0.086323 (rank : 118)
Query Neighborhood Hits	92	Target Neighborhood Hits	327	Shared Neighborhood Hits	13
SwissProt Accessions	P49749	Gene names	Evx2, Evx-2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

GBX1_HUMAN
θ value	θ > 10 (rank : 142)	NC score	0.091874 (rank : 98)
Query Neighborhood Hits	92	Target Neighborhood Hits	334	Shared Neighborhood Hits	14
SwissProt Accessions	Q14549	Gene names	GBX1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

GBX1_MOUSE
θ value	θ > 10 (rank : 143)	NC score	0.092259 (rank : 96)
Query Neighborhood Hits	92	Target Neighborhood Hits	350	Shared Neighborhood Hits	13
SwissProt Accessions	P82976, Q8CGW5	Gene names	Gbx1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

GBX2_HUMAN
θ value	θ > 10 (rank : 144)	NC score	0.094187 (rank : 87)
Query Neighborhood Hits	92	Target Neighborhood Hits	322	Shared Neighborhood Hits	13
SwissProt Accessions	P52951, O43833, Q53RX5, Q9Y5Y1	Gene names	GBX2
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2).

GBX2_MOUSE
θ value	θ > 10 (rank : 145)	NC score	0.095569 (rank : 84)
Query Neighborhood Hits	92	Target Neighborhood Hits	326	Shared Neighborhood Hits	13
SwissProt Accessions	P48031	Gene names	Gbx2, Mmoxa, Stra7
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2) (Homeobox protein STRA7).

GSCL_HUMAN
θ value	θ > 10 (rank : 146)	NC score	0.148241 (rank : 45)
Query Neighborhood Hits	92	Target Neighborhood Hits	343	Shared Neighborhood Hits	15
SwissProt Accessions	O15499	Gene names	GSCL
Domain Architecture
Description	Homeobox protein goosecoid-like (GSC-2).

GSCL_MOUSE
θ value	θ > 10 (rank : 147)	NC score	0.154717 (rank : 35)
Query Neighborhood Hits	92	Target Neighborhood Hits	339	Shared Neighborhood Hits	15
SwissProt Accessions	P56916	Gene names	Gscl
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid-like (GSC-2).

GSC_HUMAN
θ value	θ > 10 (rank : 148)	NC score	0.143878 (rank : 52)
Query Neighborhood Hits	92	Target Neighborhood Hits	369	Shared Neighborhood Hits	18
SwissProt Accessions	P56915, Q86YR1	Gene names	GSC
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid.

GSC_MOUSE
θ value	θ > 10 (rank : 149)	NC score	0.141558 (rank : 56)
Query Neighborhood Hits	92	Target Neighborhood Hits	368	Shared Neighborhood Hits	18
SwissProt Accessions	Q02591	Gene names	Gsc
Domain Architecture
Description	Homeobox protein goosecoid.

GSH2_HUMAN
θ value	θ > 10 (rank : 150)	NC score	0.072011 (rank : 183)
Query Neighborhood Hits	92	Target Neighborhood Hits	324	Shared Neighborhood Hits	14
SwissProt Accessions	Q9BZM3	Gene names	GSH2
Domain Architecture
Description	Homeobox protein GSH-2.

GSH2_MOUSE
θ value	θ > 10 (rank : 151)	NC score	0.070667 (rank : 189)
Query Neighborhood Hits	92	Target Neighborhood Hits	319	Shared Neighborhood Hits	14
SwissProt Accessions	P31316	Gene names	Gsh2, Gsh-2
Domain Architecture
Description	Homeobox protein GSH-2.

GSHI_HUMAN
θ value	θ > 10 (rank : 152)	NC score	0.070355 (rank : 192)
Query Neighborhood Hits	92	Target Neighborhood Hits	314	Shared Neighborhood Hits	15
SwissProt Accessions	Q9H4S2	Gene names	GSH1
Domain Architecture
Description	Homeobox protein GSH-1.

GSHI_MOUSE
θ value	θ > 10 (rank : 153)	NC score	0.071501 (rank : 187)
Query Neighborhood Hits	92	Target Neighborhood Hits	313	Shared Neighborhood Hits	14
SwissProt Accessions	P31315	Gene names	Gsh1, Gsh-1
Domain Architecture
Description	Homeobox protein GSH-1.

HESX1_HUMAN
θ value	θ > 10 (rank : 154)	NC score	0.113677 (rank : 76)
Query Neighborhood Hits	92	Target Neighborhood Hits	326	Shared Neighborhood Hits	13
SwissProt Accessions	Q9UBX0, Q99667	Gene names	HESX1, HANF
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (hAnf).

HESX1_MOUSE
θ value	θ > 10 (rank : 155)	NC score	0.109587 (rank : 77)
Query Neighborhood Hits	92	Target Neighborhood Hits	331	Shared Neighborhood Hits	13
SwissProt Accessions	Q61658, Q61047	Gene names	Hesx1, Hes-1, Rpx
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (Anterior- restricted homeobox protein) (Rathke pouch homeo box).

HHEX_HUMAN
θ value	θ > 10 (rank : 156)	NC score	0.082545 (rank : 136)
Query Neighborhood Hits	92	Target Neighborhood Hits	358	Shared Neighborhood Hits	15
SwissProt Accessions	Q03014	Gene names	HHEX, HEX, PRH, PRHX
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

HHEX_MOUSE
θ value	θ > 10 (rank : 157)	NC score	0.083786 (rank : 127)
Query Neighborhood Hits	92	Target Neighborhood Hits	350	Shared Neighborhood Hits	15
SwissProt Accessions	P43120	Gene names	Hhex, Prhx
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

HLX1_HUMAN
θ value	θ > 10 (rank : 158)	NC score	0.086600 (rank : 117)
Query Neighborhood Hits	92	Target Neighborhood Hits	370	Shared Neighborhood Hits	13
SwissProt Accessions	Q14774, Q15988	Gene names	HLX1
Domain Architecture
Description	Homeobox protein HLX1 (Homeobox protein HB24).

HLX1_MOUSE
θ value	θ > 10 (rank : 159)	NC score	0.088034 (rank : 110)
Query Neighborhood Hits	92	Target Neighborhood Hits	362	Shared Neighborhood Hits	13
SwissProt Accessions	Q61670	Gene names	Hlx1, Hlx
Domain Architecture
Description	Homeobox protein HLX1.

HLXB9_HUMAN
θ value	θ > 10 (rank : 160)	NC score	0.084575 (rank : 124)
Query Neighborhood Hits	92	Target Neighborhood Hits	336	Shared Neighborhood Hits	15
SwissProt Accessions	P50219, Q9Y648	Gene names	HLXB9
Domain Architecture
Description	Homeobox protein HB9.

HLXB9_MOUSE
θ value	θ > 10 (rank : 161)	NC score	0.082583 (rank : 135)
Query Neighborhood Hits	92	Target Neighborhood Hits	354	Shared Neighborhood Hits	15
SwissProt Accessions	Q9QZW9	Gene names	Hlxb9
Domain Architecture
Description	Homeobox protein HB9.

HMBX1_HUMAN
θ value	θ > 10 (rank : 162)	NC score	0.053415 (rank : 264)
Query Neighborhood Hits	92	Target Neighborhood Hits	118	Shared Neighborhood Hits	6
SwissProt Accessions	Q6NT76, Q3Y6P1, Q96GS5, Q9H701	Gene names	HMBOX1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

HME1_HUMAN
θ value	θ > 10 (rank : 163)	NC score	0.089738 (rank : 102)
Query Neighborhood Hits	92	Target Neighborhood Hits	384	Shared Neighborhood Hits	15
SwissProt Accessions	Q05925	Gene names	EN1
Domain Architecture
Description	Homeobox protein engrailed-1 (Hu-En-1).

HME1_MOUSE
θ value	θ > 10 (rank : 164)	NC score	0.089775 (rank : 101)
Query Neighborhood Hits	92	Target Neighborhood Hits	397	Shared Neighborhood Hits	15
SwissProt Accessions	P09065	Gene names	En1, En-1
Domain Architecture
Description	Homeobox protein engrailed-1 (Mo-En-1).

HME2_HUMAN
θ value	θ > 10 (rank : 165)	NC score	0.089329 (rank : 103)
Query Neighborhood Hits	92	Target Neighborhood Hits	355	Shared Neighborhood Hits	16
SwissProt Accessions	P19622	Gene names	EN2
Domain Architecture
Description	Homeobox protein engrailed-2 (Hu-En-2).

HME2_MOUSE
θ value	θ > 10 (rank : 166)	NC score	0.089066 (rank : 104)
Query Neighborhood Hits	92	Target Neighborhood Hits	352	Shared Neighborhood Hits	15
SwissProt Accessions	P09066	Gene names	En2, En-2
Domain Architecture
Description	Homeobox protein engrailed-2 (Mo-En-2).

HMX2_MOUSE
θ value	θ > 10 (rank : 167)	NC score	0.087166 (rank : 116)
Query Neighborhood Hits	92	Target Neighborhood Hits	354	Shared Neighborhood Hits	15
SwissProt Accessions	P43687, Q8R1Q2	Gene names	Hmx2, Nkx-5.2, Nkx5-2
Domain Architecture
Description	Homeobox protein HMX2 (Homeobox protein Nkx-5.2).

HMX3_MOUSE
θ value	θ > 10 (rank : 168)	NC score	0.087976 (rank : 111)
Query Neighborhood Hits	92	Target Neighborhood Hits	342	Shared Neighborhood Hits	13
SwissProt Accessions	P42581	Gene names	Hmx3, Nkx-5.1, Nkx5-1
Domain Architecture
Description	Homeobox protein HMX3 (Homeobox protein Nkx-5.1).

HNF1B_HUMAN
θ value	θ > 10 (rank : 169)	NC score	0.057865 (rank : 247)
Query Neighborhood Hits	92	Target Neighborhood Hits	80	Shared Neighborhood Hits	8
SwissProt Accessions	P35680	Gene names	TCF2, HNF1B
Domain Architecture
Description	Hepatocyte nuclear factor 1-beta (HNF-1beta) (HNF-1B) (Variant hepatic nuclear factor 1) (VHNF1) (Homeoprotein LFB3) (Transcription factor 2) (TCF-2).

HNF1B_MOUSE
θ value	θ > 10 (rank : 170)	NC score	0.050775 (rank : 276)
Query Neighborhood Hits	92	Target Neighborhood Hits	78	Shared Neighborhood Hits	8
SwissProt Accessions	P27889, Q8R162, Q9CS26, Q9R1W1, Q9R1W2, Q9WTL5, Q9WTL6	Gene names	Tcf2, Hnf-1b, Hnf1b
Domain Architecture
Description	Hepatocyte nuclear factor 1-beta (HNF-1beta) (HNF-1B) (Variant hepatic nuclear factor 1) (VHNF1) (Homeoprotein LFB3).

HOP_HUMAN
θ value	θ > 10 (rank : 171)	NC score	0.178338 (rank : 19)
Query Neighborhood Hits	92	Target Neighborhood Hits	107	Shared Neighborhood Hits	9
SwissProt Accessions	Q9BPY8, Q8N0V6, Q96CI1	Gene names	HOP, HOD, LAGY, NECC1, OB1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Lung cancer-associated Y protein) (Odd homeobox protein 1) (Not expressed in choriocarcinoma protein 1).

HOP_MOUSE
θ value	θ > 10 (rank : 172)	NC score	0.176946 (rank : 20)
Query Neighborhood Hits	92	Target Neighborhood Hits	102	Shared Neighborhood Hits	9
SwissProt Accessions	Q8R1H0, Q8C1N5, Q8CJ22	Gene names	Hop, Hod, Ob1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Homeobox-only protein) (Odd homeobox protein 1) (mOB1).

HXA11_HUMAN
θ value	θ > 10 (rank : 173)	NC score	0.052211 (rank : 269)
Query Neighborhood Hits	92	Target Neighborhood Hits	334	Shared Neighborhood Hits	13
SwissProt Accessions	P31270	Gene names	HOXA11, HOX1I
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1I).

HXA11_MOUSE
θ value	θ > 10 (rank : 174)	NC score	0.051957 (rank : 270)
Query Neighborhood Hits	92	Target Neighborhood Hits	327	Shared Neighborhood Hits	13
SwissProt Accessions	P31311, Q3V026	Gene names	Hoxa11, Hox-1.9, Hoxa-11
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1.9).

HXA13_HUMAN
θ value	θ > 10 (rank : 175)	NC score	0.058947 (rank : 242)
Query Neighborhood Hits	92	Target Neighborhood Hits	353	Shared Neighborhood Hits	16
SwissProt Accessions	P31271, O43371	Gene names	HOXA13, HOX1J
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1J).

HXA13_MOUSE
θ value	θ > 10 (rank : 176)	NC score	0.059063 (rank : 241)
Query Neighborhood Hits	92	Target Neighborhood Hits	351	Shared Neighborhood Hits	15
SwissProt Accessions	Q62424	Gene names	Hoxa13, Hox-1.10
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1.10).

HXA1_HUMAN
θ value	θ > 10 (rank : 177)	NC score	0.066923 (rank : 212)
Query Neighborhood Hits	92	Target Neighborhood Hits	334	Shared Neighborhood Hits	14
SwissProt Accessions	P49639, O43363	Gene names	HOXA1, HOX1F
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1F).

HXA1_MOUSE
θ value	θ > 10 (rank : 178)	NC score	0.068586 (rank : 206)
Query Neighborhood Hits	92	Target Neighborhood Hits	341	Shared Neighborhood Hits	14
SwissProt Accessions	P09022, P15463	Gene names	Hoxa1, Era-1, Hox-1.6, Hoxa-1
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399).

HXA2_HUMAN
θ value	θ > 10 (rank : 179)	NC score	0.063713 (rank : 224)
Query Neighborhood Hits	92	Target Neighborhood Hits	370	Shared Neighborhood Hits	16
SwissProt Accessions	O43364	Gene names	HOXA2
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A2.

HXA2_MOUSE
θ value	θ > 10 (rank : 180)	NC score	0.063039 (rank : 227)
Query Neighborhood Hits	92	Target Neighborhood Hits	338	Shared Neighborhood Hits	16
SwissProt Accessions	P31245, Q149U3, Q920T8	Gene names	Hoxa2, Hox-1.11, Hoxa-2
Domain Architecture
Description	Homeobox protein Hox-A2 (Hox-1.11) (Hox1.11).

HXA3_HUMAN
θ value	θ > 10 (rank : 181)	NC score	0.074999 (rank : 172)
Query Neighborhood Hits	92	Target Neighborhood Hits	535	Shared Neighborhood Hits	22
SwissProt Accessions	O43365	Gene names	HOXA3, HOX1E
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1E).

HXA3_MOUSE
θ value	θ > 10 (rank : 182)	NC score	0.070301 (rank : 194)
Query Neighborhood Hits	92	Target Neighborhood Hits	558	Shared Neighborhood Hits	22
SwissProt Accessions	P02831, Q4V9Z8, Q61197	Gene names	Hoxa3, Hox-1.5, Hoxa-3
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1.5) (MO-10).

HXA4_HUMAN
θ value	θ > 10 (rank : 183)	NC score	0.073666 (rank : 175)
Query Neighborhood Hits	92	Target Neighborhood Hits	370	Shared Neighborhood Hits	18
SwissProt Accessions	Q00056, O43366	Gene names	HOXA4, HOX1D
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4).

HXA4_MOUSE
θ value	θ > 10 (rank : 184)	NC score	0.075618 (rank : 169)
Query Neighborhood Hits	92	Target Neighborhood Hits	379	Shared Neighborhood Hits	17
SwissProt Accessions	P06798, Q61684, Q64388, Q8BPE6	Gene names	Hoxa4, Hox-1.4, Hoxa-4
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1.4) (Homeobox protein MH-3).

HXA5_HUMAN
θ value	θ > 10 (rank : 185)	NC score	0.068506 (rank : 207)
Query Neighborhood Hits	92	Target Neighborhood Hits	336	Shared Neighborhood Hits	15
SwissProt Accessions	P20719, O43367, Q96CY6	Gene names	HOXA5, HOX1C
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1C).

HXA5_MOUSE
θ value	θ > 10 (rank : 186)	NC score	0.068049 (rank : 209)
Query Neighborhood Hits	92	Target Neighborhood Hits	338	Shared Neighborhood Hits	16
SwissProt Accessions	P09021, Q91VQ5	Gene names	Hoxa5, Hox-1.3, Hoxa-5
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1.3) (M2).

HXA6_HUMAN
θ value	θ > 10 (rank : 187)	NC score	0.068990 (rank : 203)
Query Neighborhood Hits	92	Target Neighborhood Hits	309	Shared Neighborhood Hits	14
SwissProt Accessions	P31267, Q9UPM0	Gene names	HOXA6, HOX1B
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A6 (Hox-1B).

HXA6_MOUSE
θ value	θ > 10 (rank : 188)	NC score	0.069438 (rank : 201)
Query Neighborhood Hits	92	Target Neighborhood Hits	304	Shared Neighborhood Hits	14
SwissProt Accessions	P09092, Q9JI98	Gene names	Hoxa6, Hox-1.2, Hoxa-6
Domain Architecture
Description	Homeobox protein Hox-A6 (Hox-1.2) (M5-4).

HXA7_HUMAN
θ value	θ > 10 (rank : 189)	NC score	0.064527 (rank : 220)
Query Neighborhood Hits	92	Target Neighborhood Hits	309	Shared Neighborhood Hits	15
SwissProt Accessions	P31268, O43368, O43486, O95655, Q9NSC8, Q9UDM1	Gene names	HOXA7, HOX1A
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1).

HXA7_MOUSE
θ value	θ > 10 (rank : 190)	NC score	0.065591 (rank : 214)
Query Neighborhood Hits	92	Target Neighborhood Hits	318	Shared Neighborhood Hits	15
SwissProt Accessions	P02830, Q544P0	Gene names	Hoxa7, Hox-1.1, Hoxa-7
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1.1) (M6-12) (M6).

HXA9_HUMAN
θ value	θ > 10 (rank : 191)	NC score	0.053127 (rank : 267)
Query Neighborhood Hits	92	Target Neighborhood Hits	332	Shared Neighborhood Hits	14
SwissProt Accessions	P31269, O43369, O43429, Q99820	Gene names	HOXA9, HOX1G
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1G).

HXA9_MOUSE
θ value	θ > 10 (rank : 192)	NC score	0.053226 (rank : 266)
Query Neighborhood Hits	92	Target Neighborhood Hits	334	Shared Neighborhood Hits	14
SwissProt Accessions	P09631, O70154, O70155	Gene names	Hoxa9, Hox-1.7, Hoxa-9
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1.7).

HXB13_HUMAN
θ value	θ > 10 (rank : 193)	NC score	0.059522 (rank : 239)
Query Neighborhood Hits	92	Target Neighborhood Hits	377	Shared Neighborhood Hits	14
SwissProt Accessions	Q92826, Q96QM4, Q99810	Gene names	HOXB13
Domain Architecture
Description	Homeobox protein Hox-B13.

HXB13_MOUSE
θ value	θ > 10 (rank : 194)	NC score	0.056083 (rank : 254)
Query Neighborhood Hits	92	Target Neighborhood Hits	384	Shared Neighborhood Hits	15
SwissProt Accessions	P70321, Q80Y12	Gene names	Hoxb13
Domain Architecture
Description	Homeobox protein Hox-B13.

HXB1_HUMAN
θ value	θ > 10 (rank : 195)	NC score	0.069820 (rank : 197)
Query Neighborhood Hits	92	Target Neighborhood Hits	356	Shared Neighborhood Hits	14
SwissProt Accessions	P14653	Gene names	HOXB1, HOX2I
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2I).

HXB1_MOUSE
θ value	θ > 10 (rank : 196)	NC score	0.069131 (rank : 202)
Query Neighborhood Hits	92	Target Neighborhood Hits	341	Shared Neighborhood Hits	14
SwissProt Accessions	P17919, Q3ZAY6, Q9CYH3	Gene names	Hoxb1, Hox-2.9, Hoxb-1
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2.9).

HXB2_HUMAN
θ value	θ > 10 (rank : 197)	NC score	0.068838 (rank : 204)
Query Neighborhood Hits	92	Target Neighborhood Hits	367	Shared Neighborhood Hits	14
SwissProt Accessions	P14652, P10913, P17485	Gene names	HOXB2, HOX2H
Domain Architecture
Description	Homeobox protein Hox-B2 (Hox-2H) (Hox-2.8) (K8).

HXB2_MOUSE
θ value	θ > 10 (rank : 198)	NC score	0.073244 (rank : 177)
Query Neighborhood Hits	92	Target Neighborhood Hits	350	Shared Neighborhood Hits	15
SwissProt Accessions	P0C1T1	Gene names	Hoxb2, Hox-2.8
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-B2 (Hox-2.8).

HXB3_HUMAN
θ value	θ > 10 (rank : 199)	NC score	0.079455 (rank : 154)
Query Neighborhood Hits	92	Target Neighborhood Hits	559	Shared Neighborhood Hits	25
SwissProt Accessions	P14651, O95615, P17484	Gene names	HOXB3, HOX2G
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7).

HXB3_MOUSE
θ value	θ > 10 (rank : 200)	NC score	0.078605 (rank : 159)
Query Neighborhood Hits	92	Target Neighborhood Hits	493	Shared Neighborhood Hits	22
SwissProt Accessions	P09026, P10285, Q4PJ06, Q61680	Gene names	Hoxb3, Hox-2.7, Hoxb-3
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2.7) (Homeobox protein MH-23).

HXB4_HUMAN
θ value	θ > 10 (rank : 201)	NC score	0.072809 (rank : 178)
Query Neighborhood Hits	92	Target Neighborhood Hits	376	Shared Neighborhood Hits	19
SwissProt Accessions	P17483, Q9NTA0	Gene names	HOXB4, HOX2F
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2F) (Hox-2.6).

HXB4_MOUSE
θ value	θ > 10 (rank : 202)	NC score	0.072093 (rank : 182)
Query Neighborhood Hits	92	Target Neighborhood Hits	375	Shared Neighborhood Hits	19
SwissProt Accessions	P10284, Q3UZB4, Q4VBG0	Gene names	Hoxb4, Hox-2.6, Hoxb-4
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2.6).

HXB5_HUMAN
θ value	θ > 10 (rank : 203)	NC score	0.065187 (rank : 218)
Query Neighborhood Hits	92	Target Neighborhood Hits	332	Shared Neighborhood Hits	14
SwissProt Accessions	P09067, P09069	Gene names	HOXB5, HOX2A
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2A) (HHO.C10) (HU-1).

HXB5_MOUSE
θ value	θ > 10 (rank : 204)	NC score	0.065017 (rank : 219)
Query Neighborhood Hits	92	Target Neighborhood Hits	337	Shared Neighborhood Hits	14
SwissProt Accessions	P09079, Q3ZAY8	Gene names	Hoxb5, Hox-2.1, Hoxb-5
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2.1) (MU-1) (H24.1).

HXB6_HUMAN
θ value	θ > 10 (rank : 205)	NC score	0.071609 (rank : 185)
Query Neighborhood Hits	92	Target Neighborhood Hits	307	Shared Neighborhood Hits	14
SwissProt Accessions	P17509, P09068, Q9HB11, Q9UGH2	Gene names	HOXB6, HOX2B
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2).

HXB6_MOUSE
θ value	θ > 10 (rank : 206)	NC score	0.071581 (rank : 186)
Query Neighborhood Hits	92	Target Neighborhood Hits	309	Shared Neighborhood Hits	14
SwissProt Accessions	P09023	Gene names	Hoxb6, Hox-2.2, Hoxb-6
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2.2) (Homeobox protein MH-22A).

HXB7_HUMAN
θ value	θ > 10 (rank : 207)	NC score	0.065401 (rank : 216)
Query Neighborhood Hits	92	Target Neighborhood Hits	311	Shared Neighborhood Hits	14
SwissProt Accessions	P09629, Q15957	Gene names	HOXB7, HOX2C
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2C) (HHO.C1).

HXB7_MOUSE
θ value	θ > 10 (rank : 208)	NC score	0.064347 (rank : 223)
Query Neighborhood Hits	92	Target Neighborhood Hits	314	Shared Neighborhood Hits	14
SwissProt Accessions	P09024, Q3UW15	Gene names	Hoxb7, Hox-2.3, Hoxb-7
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2.3) (MUB1) (Homeobox protein MH-22B).

HXB8_HUMAN
θ value	θ > 10 (rank : 209)	NC score	0.057382 (rank : 250)
Query Neighborhood Hits	92	Target Neighborhood Hits	324	Shared Neighborhood Hits	14
SwissProt Accessions	P17481, Q9H1I2	Gene names	HOXB8, HOX2D
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4).

HXB8_MOUSE
θ value	θ > 10 (rank : 210)	NC score	0.057380 (rank : 251)
Query Neighborhood Hits	92	Target Neighborhood Hits	325	Shared Neighborhood Hits	14
SwissProt Accessions	P09632	Gene names	Hoxb8, Hox-2.4, Hoxb-8
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2.4).

HXB9_HUMAN
θ value	θ > 10 (rank : 211)	NC score	0.051379 (rank : 271)
Query Neighborhood Hits	92	Target Neighborhood Hits	344	Shared Neighborhood Hits	14
SwissProt Accessions	P17482, Q9H1I1	Gene names	HOXB9, HOX2E
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5).

HXC12_HUMAN
θ value	θ > 10 (rank : 212)	NC score	0.055642 (rank : 255)
Query Neighborhood Hits	92	Target Neighborhood Hits	313	Shared Neighborhood Hits	13
SwissProt Accessions	P31275, Q9BXJ6	Gene names	HOXC12, HOX3F
Domain Architecture
Description	Homeobox protein Hox-C12 (Hox-3F).

HXC12_MOUSE
θ value	θ > 10 (rank : 213)	NC score	0.054968 (rank : 258)
Query Neighborhood Hits	92	Target Neighborhood Hits	316	Shared Neighborhood Hits	13
SwissProt Accessions	Q8K5B8	Gene names	Hoxc12, Hox-3.8, Hoxc-12
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C12 (Hox-3.8).

HXC13_HUMAN
θ value	θ > 10 (rank : 214)	NC score	0.061686 (rank : 235)
Query Neighborhood Hits	92	Target Neighborhood Hits	336	Shared Neighborhood Hits	13
SwissProt Accessions	P31276, Q96J32, Q9NR24, Q9NYD5	Gene names	HOXC13, HOX3G
Domain Architecture
Description	Homeobox protein Hox-C13 (Hox-3G).

HXC13_MOUSE
θ value	θ > 10 (rank : 215)	NC score	0.061671 (rank : 236)
Query Neighborhood Hits	92	Target Neighborhood Hits	337	Shared Neighborhood Hits	13
SwissProt Accessions	P50207, Q53Z78, Q920I7	Gene names	Hoxc13, Hoxc-13
Domain Architecture
Description	Homeobox protein Hox-C13.

HXC4_HUMAN
θ value	θ > 10 (rank : 216)	NC score	0.069650 (rank : 198)
Query Neighborhood Hits	92	Target Neighborhood Hits	361	Shared Neighborhood Hits	16
SwissProt Accessions	P09017	Gene names	HOXC4, HOX3E
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3E) (CP19).

HXC4_MOUSE
θ value	θ > 10 (rank : 217)	NC score	0.072150 (rank : 181)
Query Neighborhood Hits	92	Target Neighborhood Hits	365	Shared Neighborhood Hits	17
SwissProt Accessions	Q08624	Gene names	Hoxc4, Hox-3.5, Hoxc-4
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3.5).

HXC5_HUMAN
θ value	θ > 10 (rank : 218)	NC score	0.069881 (rank : 196)
Query Neighborhood Hits	92	Target Neighborhood Hits	316	Shared Neighborhood Hits	15
SwissProt Accessions	Q00444	Gene names	HOXC5, HOX3D
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3D) (CP11).

HXC5_MOUSE
θ value	θ > 10 (rank : 219)	NC score	0.069604 (rank : 200)
Query Neighborhood Hits	92	Target Neighborhood Hits	316	Shared Neighborhood Hits	15
SwissProt Accessions	P32043, Q8BJW4	Gene names	Hoxc5, Hox-3.4, Hoxc-5
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3.4) (Hox-6.2).

HXC6_HUMAN
θ value	θ > 10 (rank : 220)	NC score	0.062658 (rank : 229)
Query Neighborhood Hits	92	Target Neighborhood Hits	306	Shared Neighborhood Hits	13
SwissProt Accessions	P09630	Gene names	HOXC6, HOX3C
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3C) (HHO.C8) (CP25).

HXC6_MOUSE
θ value	θ > 10 (rank : 221)	NC score	0.062658 (rank : 230)
Query Neighborhood Hits	92	Target Neighborhood Hits	306	Shared Neighborhood Hits	13
SwissProt Accessions	P10629, Q61683	Gene names	Hoxc6, Hox-3.3, Hoxc-6
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3.3) (Hox-6.1).

HXC8_HUMAN
θ value	θ > 10 (rank : 222)	NC score	0.055074 (rank : 257)
Query Neighborhood Hits	92	Target Neighborhood Hits	327	Shared Neighborhood Hits	13
SwissProt Accessions	P31273, O15221, O15362	Gene names	HOXC8, HOX3A
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3A).

HXC8_MOUSE
θ value	θ > 10 (rank : 223)	NC score	0.055083 (rank : 256)
Query Neighborhood Hits	92	Target Neighborhood Hits	327	Shared Neighborhood Hits	13
SwissProt Accessions	P09025	Gene names	Hoxc8, Hox-3.1, Hoxc-8
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3.1) (M31).

HXC9_HUMAN
θ value	θ > 10 (rank : 224)	NC score	0.051326 (rank : 273)
Query Neighborhood Hits	92	Target Neighborhood Hits	339	Shared Neighborhood Hits	16
SwissProt Accessions	P31274, Q9H1I0	Gene names	HOXC9, HOX3B
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3B).

HXC9_MOUSE
θ value	θ > 10 (rank : 225)	NC score	0.051315 (rank : 274)
Query Neighborhood Hits	92	Target Neighborhood Hits	338	Shared Neighborhood Hits	16
SwissProt Accessions	P09633	Gene names	Hoxc9, Hox-3.2, Hoxc-9
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3.2).

HXD11_HUMAN
θ value	θ > 10 (rank : 226)	NC score	0.053054 (rank : 268)
Query Neighborhood Hits	92	Target Neighborhood Hits	353	Shared Neighborhood Hits	15
SwissProt Accessions	P31277, Q9NS02	Gene names	HOXD11, HOX4F
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4F).

HXD11_MOUSE
θ value	θ > 10 (rank : 227)	NC score	0.051348 (rank : 272)
Query Neighborhood Hits	92	Target Neighborhood Hits	376	Shared Neighborhood Hits	17
SwissProt Accessions	P23813	Gene names	Hoxd11, Hox-4.6, Hoxd-11
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5).

HXD12_HUMAN
θ value	θ > 10 (rank : 228)	NC score	0.057831 (rank : 248)
Query Neighborhood Hits	92	Target Neighborhood Hits	334	Shared Neighborhood Hits	13
SwissProt Accessions	P35452, Q9NS03	Gene names	HOXD12, HOX4H
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4H).

HXD12_MOUSE
θ value	θ > 10 (rank : 229)	NC score	0.058325 (rank : 244)
Query Neighborhood Hits	92	Target Neighborhood Hits	370	Shared Neighborhood Hits	16
SwissProt Accessions	P23812	Gene names	Hoxd12, Hox-4.7, Hoxd-12
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4.7) (Hox-5.6).

HXD13_HUMAN
θ value	θ > 10 (rank : 230)	NC score	0.061757 (rank : 234)
Query Neighborhood Hits	92	Target Neighborhood Hits	332	Shared Neighborhood Hits	14
SwissProt Accessions	P35453	Gene names	HOXD13, HOX4I
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4I).

HXD13_MOUSE
θ value	θ > 10 (rank : 231)	NC score	0.061780 (rank : 233)
Query Neighborhood Hits	92	Target Neighborhood Hits	324	Shared Neighborhood Hits	14
SwissProt Accessions	P70217, Q2VPB0, Q2VPB1, Q64177	Gene names	Hoxd13, Hox-4.8
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4.8).

HXD1_HUMAN
θ value	θ > 10 (rank : 232)	NC score	0.063613 (rank : 225)
Query Neighborhood Hits	92	Target Neighborhood Hits	337	Shared Neighborhood Hits	16
SwissProt Accessions	Q9GZZ0	Gene names	HOXD1
Domain Architecture
Description	Homeobox protein Hox-D1.

HXD1_MOUSE
θ value	θ > 10 (rank : 233)	NC score	0.059186 (rank : 240)
Query Neighborhood Hits	92	Target Neighborhood Hits	381	Shared Neighborhood Hits	16
SwissProt Accessions	Q01822	Gene names	Hoxd1, Hox-4.9, Hoxd-1
Domain Architecture
Description	Homeobox protein Hox-D1 (Hox-4.9).

HXD3_HUMAN
θ value	θ > 10 (rank : 234)	NC score	0.066039 (rank : 213)
Query Neighborhood Hits	92	Target Neighborhood Hits	433	Shared Neighborhood Hits	24
SwissProt Accessions	P31249, Q99955, Q9BSC5	Gene names	HOXD3, HOX4A
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4A).

HXD3_MOUSE
θ value	θ > 10 (rank : 235)	NC score	0.067374 (rank : 211)
Query Neighborhood Hits	92	Target Neighborhood Hits	435	Shared Neighborhood Hits	18
SwissProt Accessions	P09027, Q3UUD3	Gene names	Hoxd3, Hox-4.1, Hoxd-3
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4.1) (Homeobox protein MH-19).

HXD4_HUMAN
θ value	θ > 10 (rank : 236)	NC score	0.073412 (rank : 176)
Query Neighborhood Hits	92	Target Neighborhood Hits	337	Shared Neighborhood Hits	15
SwissProt Accessions	P09016, Q96AU0	Gene names	HOXD4, HOX4B
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4B) (Hox-5.1) (HHO.C13).

HXD4_MOUSE
θ value	θ > 10 (rank : 237)	NC score	0.073707 (rank : 174)
Query Neighborhood Hits	92	Target Neighborhood Hits	339	Shared Neighborhood Hits	16
SwissProt Accessions	P10628, P97451, Q3UXL6	Gene names	Hoxd4, Hox-4.2, Hoxd-4
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4.2) (Hox-5.1).

HXD8_HUMAN
θ value	θ > 10 (rank : 238)	NC score	0.058139 (rank : 246)
Query Neighborhood Hits	92	Target Neighborhood Hits	338	Shared Neighborhood Hits	15
SwissProt Accessions	P13378	Gene names	HOXD8, HOX4E
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4).

HXD8_MOUSE
θ value	θ > 10 (rank : 239)	NC score	0.058448 (rank : 243)
Query Neighborhood Hits	92	Target Neighborhood Hits	333	Shared Neighborhood Hits	14
SwissProt Accessions	P23463	Gene names	Hoxd8, Hox-4.3, Hoxd-8
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4).

IPF1_HUMAN
θ value	θ > 10 (rank : 240)	NC score	0.076225 (rank : 168)
Query Neighborhood Hits	92	Target Neighborhood Hits	330	Shared Neighborhood Hits	16
SwissProt Accessions	P52945, O60594	Gene names	IPF1, PDX1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Pancreas/duodenum homeobox 1) (PDX- 1) (Islet/duodenum homeobox-1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Insulin upstream factor 1) (IUF-1) (Glucose- sensitive factor) (GSF).

IPF1_MOUSE
θ value	θ > 10 (rank : 241)	NC score	0.077671 (rank : 165)
Query Neighborhood Hits	92	Target Neighborhood Hits	340	Shared Neighborhood Hits	16
SwissProt Accessions	P52946	Gene names	Ipf1, Pdx1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Islet/duodenum homeobox 1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Pancreas/duodenum homeobox 1).

LBX1_HUMAN
θ value	θ > 10 (rank : 242)	NC score	0.085557 (rank : 120)
Query Neighborhood Hits	92	Target Neighborhood Hits	357	Shared Neighborhood Hits	14
SwissProt Accessions	P52954	Gene names	LBX1
Domain Architecture
Description	Transcription factor LBX1.

LBX1_MOUSE
θ value	θ > 10 (rank : 243)	NC score	0.081360 (rank : 145)
Query Neighborhood Hits	92	Target Neighborhood Hits	349	Shared Neighborhood Hits	14
SwissProt Accessions	P52955	Gene names	Lbx1, Lbx1h
Domain Architecture
Description	Transcription factor LBX1.

LHX1_HUMAN
θ value	θ > 10 (rank : 244)	NC score	0.070031 (rank : 195)
Query Neighborhood Hits	92	Target Neighborhood Hits	453	Shared Neighborhood Hits	15
SwissProt Accessions	P48742, Q3MIW0	Gene names	LHX1, LIM1
Domain Architecture
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

LHX1_MOUSE
θ value	θ > 10 (rank : 245)	NC score	0.071246 (rank : 188)
Query Neighborhood Hits	92	Target Neighborhood Hits	453	Shared Neighborhood Hits	15
SwissProt Accessions	P63006, P36199	Gene names	Lhx1, Lim-1, Lim1
Domain Architecture	No domain graphic available
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

LHX2_HUMAN
θ value	θ > 10 (rank : 246)	NC score	0.081672 (rank : 143)
Query Neighborhood Hits	92	Target Neighborhood Hits	432	Shared Neighborhood Hits	14
SwissProt Accessions	P50458, O95860, Q8N1Z3	Gene names	LHX2, LH2
Domain Architecture
Description	LIM/homeobox protein Lhx2 (Homeobox protein LH-2).

LHX2_MOUSE
θ value	θ > 10 (rank : 247)	NC score	0.080359 (rank : 151)
Query Neighborhood Hits	92	Target Neighborhood Hits	431	Shared Neighborhood Hits	14
SwissProt Accessions	Q9Z0S2	Gene names	Lhx2
Domain Architecture
Description	LIM/homeobox protein Lhx2.

LHX3_HUMAN
θ value	θ > 10 (rank : 248)	NC score	0.062889 (rank : 228)
Query Neighborhood Hits	92	Target Neighborhood Hits	474	Shared Neighborhood Hits	16
SwissProt Accessions	Q9UBR4, Q9NZB5, Q9P0I8, Q9P0I9	Gene names	LHX3
Domain Architecture
Description	LIM/homeobox protein Lhx3.

LHX3_MOUSE
θ value	θ > 10 (rank : 249)	NC score	0.063399 (rank : 226)
Query Neighborhood Hits	92	Target Neighborhood Hits	451	Shared Neighborhood Hits	14
SwissProt Accessions	P50481, Q61800, Q61801	Gene names	Lhx3, Lim-3, Lim3, Plim
Domain Architecture
Description	LIM/homeobox protein Lhx3 (Homeobox protein LIM-3) (Homeobox protein P-LIM) (LIM homeobox protein 3).

LHX4_HUMAN
θ value	θ > 10 (rank : 250)	NC score	0.064401 (rank : 222)
Query Neighborhood Hits	92	Target Neighborhood Hits	455	Shared Neighborhood Hits	15
SwissProt Accessions	Q969G2, Q8NHE0, Q8TCJ1, Q8WWX2, Q969W2	Gene names	LHX4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

LHX4_MOUSE
θ value	θ > 10 (rank : 251)	NC score	0.064444 (rank : 221)
Query Neighborhood Hits	92	Target Neighborhood Hits	457	Shared Neighborhood Hits	15
SwissProt Accessions	P53776, O08916, Q9R280	Gene names	Lhx4, Gsh-4, Gsh4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

LHX5_HUMAN
θ value	θ > 10 (rank : 252)	NC score	0.068336 (rank : 208)
Query Neighborhood Hits	92	Target Neighborhood Hits	453	Shared Neighborhood Hits	15
SwissProt Accessions	Q9H2C1	Gene names	LHX5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

LHX5_MOUSE
θ value	θ > 10 (rank : 253)	NC score	0.068605 (rank : 205)
Query Neighborhood Hits	92	Target Neighborhood Hits	456	Shared Neighborhood Hits	15
SwissProt Accessions	P61375, P50459	Gene names	Lhx5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

LHX61_HUMAN
θ value	θ > 10 (rank : 254)	NC score	0.080496 (rank : 149)
Query Neighborhood Hits	92	Target Neighborhood Hits	412	Shared Neighborhood Hits	15
SwissProt Accessions	Q9UPM6, Q5T7S8, Q9NTK3, Q9UPM5	Gene names	LHX6, LHX6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1 (Lhx6).

LHX61_MOUSE
θ value	θ > 10 (rank : 255)	NC score	0.079927 (rank : 153)
Query Neighborhood Hits	92	Target Neighborhood Hits	396	Shared Neighborhood Hits	15
SwissProt Accessions	Q9R1R0, Q9R1R1	Gene names	Lhx6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1.

LHX6_MOUSE
θ value	θ > 10 (rank : 256)	NC score	0.079122 (rank : 155)
Query Neighborhood Hits	92	Target Neighborhood Hits	399	Shared Neighborhood Hits	14
SwissProt Accessions	O88706	Gene names	Lhx6
Domain Architecture
Description	LIM/homeobox protein Lhx6.

LHX8_MOUSE
θ value	θ > 10 (rank : 257)	NC score	0.083155 (rank : 131)
Query Neighborhood Hits	92	Target Neighborhood Hits	406	Shared Neighborhood Hits	14
SwissProt Accessions	O35652, O70163, O88707	Gene names	Lhx8, Lhx7
Domain Architecture
Description	LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3).

LHX9_HUMAN
θ value	θ > 10 (rank : 258)	NC score	0.070455 (rank : 190)
Query Neighborhood Hits	92	Target Neighborhood Hits	444	Shared Neighborhood Hits	14
SwissProt Accessions	Q9NQ69, Q5VUE3, Q9BYU6, Q9NQ70	Gene names	LHX9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

LHX9_MOUSE
θ value	θ > 10 (rank : 259)	NC score	0.072209 (rank : 180)
Query Neighborhood Hits	92	Target Neighborhood Hits	445	Shared Neighborhood Hits	14
SwissProt Accessions	Q9WUH2, Q9QYQ5, Q9QYQ6, Q9QZ00, Q9WU44	Gene names	Lhx9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

LMX1A_HUMAN
θ value	θ > 10 (rank : 260)	NC score	0.053513 (rank : 263)
Query Neighborhood Hits	92	Target Neighborhood Hits	406	Shared Neighborhood Hits	13
SwissProt Accessions	Q8TE12, Q8TE11	Gene names	LMX1A
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

LMX1A_MOUSE
θ value	θ > 10 (rank : 261)	NC score	0.053262 (rank : 265)
Query Neighborhood Hits	92	Target Neighborhood Hits	405	Shared Neighborhood Hits	14
SwissProt Accessions	Q9JKU8	Gene names	Lmx1a
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

LMX1B_HUMAN
θ value	θ > 10 (rank : 262)	NC score	0.058312 (rank : 245)
Query Neighborhood Hits	92	Target Neighborhood Hits	404	Shared Neighborhood Hits	15
SwissProt Accessions	O60663, O75463	Gene names	LMX1B
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

LMX1B_MOUSE
θ value	θ > 10 (rank : 263)	NC score	0.057707 (rank : 249)
Query Neighborhood Hits	92	Target Neighborhood Hits	394	Shared Neighborhood Hits	14
SwissProt Accessions	O88609	Gene names	Lmx1b
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

MEOX1_HUMAN
θ value	θ > 10 (rank : 264)	NC score	0.085532 (rank : 121)
Query Neighborhood Hits	92	Target Neighborhood Hits	342	Shared Neighborhood Hits	14
SwissProt Accessions	P50221	Gene names	MEOX1, MOX1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

MEOX1_MOUSE
θ value	θ > 10 (rank : 265)	NC score	0.082395 (rank : 139)
Query Neighborhood Hits	92	Target Neighborhood Hits	345	Shared Neighborhood Hits	15
SwissProt Accessions	P32442	Gene names	Meox1, Mox-1, Mox1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

MEOX2_HUMAN
θ value	θ > 10 (rank : 266)	NC score	0.088977 (rank : 105)
Query Neighborhood Hits	92	Target Neighborhood Hits	340	Shared Neighborhood Hits	15
SwissProt Accessions	P50222, O75263, Q9UPL6	Gene names	MEOX2, GAX, MOX2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth arrest-specific homeobox).

MEOX2_MOUSE
θ value	θ > 10 (rank : 267)	NC score	0.088114 (rank : 108)
Query Neighborhood Hits	92	Target Neighborhood Hits	341	Shared Neighborhood Hits	16
SwissProt Accessions	P32443, Q544T6	Gene names	Meox2, Gax, Mox-2, Mox2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2).

MSX1_HUMAN
θ value	θ > 10 (rank : 268)	NC score	0.081419 (rank : 144)
Query Neighborhood Hits	92	Target Neighborhood Hits	374	Shared Neighborhood Hits	14
SwissProt Accessions	P28360, Q96NY4	Gene names	MSX1, HOX7
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7).

MSX1_MOUSE
θ value	θ > 10 (rank : 269)	NC score	0.082643 (rank : 134)
Query Neighborhood Hits	92	Target Neighborhood Hits	322	Shared Neighborhood Hits	14
SwissProt Accessions	P13297	Gene names	Msx1, Hox7, Hox7.1
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7) (Hox- 7.1).

MSX2_HUMAN
θ value	θ > 10 (rank : 270)	NC score	0.083092 (rank : 133)
Query Neighborhood Hits	92	Target Neighborhood Hits	337	Shared Neighborhood Hits	14
SwissProt Accessions	P35548	Gene names	MSX2, HOX8
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8).

MSX2_MOUSE
θ value	θ > 10 (rank : 271)	NC score	0.083968 (rank : 126)
Query Neighborhood Hits	92	Target Neighborhood Hits	345	Shared Neighborhood Hits	16
SwissProt Accessions	Q03358, Q63856	Gene names	Msx2, Hox-8.1, Msx-2
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8.1).

MSX3_MOUSE
θ value	θ > 10 (rank : 272)	NC score	0.083205 (rank : 130)
Query Neighborhood Hits	92	Target Neighborhood Hits	330	Shared Neighborhood Hits	13
SwissProt Accessions	P70354, P70246, Q03360, Q80W10	Gene names	Msx3, Msx-3
Domain Architecture
Description	Homeobox protein MSX-3.

NKX12_MOUSE
θ value	θ > 10 (rank : 273)	NC score	0.105746 (rank : 79)
Query Neighborhood Hits	92	Target Neighborhood Hits	332	Shared Neighborhood Hits	16
SwissProt Accessions	P42580, Q9JHF2, Q9JKW5, Q9JKW6, Q9JKW9, Q9JKX0, Q9JKX1	Gene names	Nkx1-2, Nkx1.1, Sax1
Domain Architecture
Description	NK1 transcription factor-related protein 2 (Homeobox protein SAX-1) (NKX-1.1).

NKX22_HUMAN
θ value	θ > 10 (rank : 274)	NC score	0.067812 (rank : 210)
Query Neighborhood Hits	92	Target Neighborhood Hits	342	Shared Neighborhood Hits	16
SwissProt Accessions	O95096	Gene names	NKX2-2, NKX2.2, NKX2B
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

NKX22_MOUSE
θ value	θ > 10 (rank : 275)	NC score	0.065343 (rank : 217)
Query Neighborhood Hits	92	Target Neighborhood Hits	336	Shared Neighborhood Hits	14
SwissProt Accessions	P42586	Gene names	Nkx2-2, Nkx-2.2, Nkx2b
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

NKX23_HUMAN
θ value	θ > 10 (rank : 276)	NC score	0.081726 (rank : 142)
Query Neighborhood Hits	92	Target Neighborhood Hits	346	Shared Neighborhood Hits	14
SwissProt Accessions	Q8TAU0, Q9NYS6	Gene names	NKX2-3, NKX23, NKX2C
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NKX-2.3) (Homeobox protein NK-2 homolog C).

NKX23_MOUSE
θ value	θ > 10 (rank : 277)	NC score	0.080204 (rank : 152)
Query Neighborhood Hits	92	Target Neighborhood Hits	340	Shared Neighborhood Hits	14
SwissProt Accessions	P97334, Q9QZ60, Q9WV67	Gene names	Nkx2-3, Nkx-2.3, Nkx2c
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NK-2 homolog C) (Nkx2-C) (Homeobox protein NK-2 homolog 3).

NKX24_HUMAN
θ value	θ > 10 (rank : 278)	NC score	0.078250 (rank : 161)
Query Neighborhood Hits	92	Target Neighborhood Hits	366	Shared Neighborhood Hits	14
SwissProt Accessions	Q9H2Z4	Gene names	NKX2-4, NKX2D
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

NKX24_MOUSE
θ value	θ > 10 (rank : 279)	NC score	0.081200 (rank : 147)
Query Neighborhood Hits	92	Target Neighborhood Hits	356	Shared Neighborhood Hits	14
SwissProt Accessions	Q9EQM3, Q9EQM4	Gene names	Nkx2-4, Nkx2d
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

NKX25_HUMAN
θ value	θ > 10 (rank : 280)	NC score	0.081812 (rank : 141)
Query Neighborhood Hits	92	Target Neighborhood Hits	338	Shared Neighborhood Hits	14
SwissProt Accessions	P52952	Gene names	NKX2-5, CSX, NKX2.5, NKX2E
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

NKX25_MOUSE
θ value	θ > 10 (rank : 281)	NC score	0.081299 (rank : 146)
Query Neighborhood Hits	92	Target Neighborhood Hits	347	Shared Neighborhood Hits	16
SwissProt Accessions	P42582, P97335	Gene names	Nkx2-5, Csx, Nkx-2.5, Nkx2e
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

NKX26_MOUSE
θ value	θ > 10 (rank : 282)	NC score	0.074710 (rank : 173)
Query Neighborhood Hits	92	Target Neighborhood Hits	343	Shared Neighborhood Hits	14
SwissProt Accessions	P43688	Gene names	Nkx2-6, Nkx-2.6, Nkx2f
Domain Architecture
Description	Homeobox protein Nkx-2.6 (Homeobox protein NK-2 homolog F).

NKX28_HUMAN
θ value	θ > 10 (rank : 283)	NC score	0.069615 (rank : 199)
Query Neighborhood Hits	92	Target Neighborhood Hits	352	Shared Neighborhood Hits	14
SwissProt Accessions	O15522	Gene names	NKX2-8, NKX-2.8, NKX2G, NKX2H
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H).

NKX28_MOUSE
θ value	θ > 10 (rank : 284)	NC score	0.065440 (rank : 215)
Query Neighborhood Hits	92	Target Neighborhood Hits	347	Shared Neighborhood Hits	15
SwissProt Accessions	O70584	Gene names	Nkx2-8, Nkx-2.9, Nkx2-9, Nkx2h
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H) (Homeobox protein Nkx-2.9).

NKX31_HUMAN
θ value	θ > 10 (rank : 285)	NC score	0.078363 (rank : 160)
Query Neighborhood Hits	92	Target Neighborhood Hits	331	Shared Neighborhood Hits	14
SwissProt Accessions	Q99801, O15465, Q9H2P4, Q9H2P5, Q9H2P6, Q9H2P7, Q9HBG0	Gene names	NKX3-1, NKX3.1, NKX3A
Domain Architecture
Description	Homeobox protein Nkx-3.1.

NKX31_MOUSE
θ value	θ > 10 (rank : 286)	NC score	0.084722 (rank : 123)
Query Neighborhood Hits	92	Target Neighborhood Hits	379	Shared Neighborhood Hits	16
SwissProt Accessions	P97436, O09087	Gene names	Nkx3-1, Nkx-3.1, Nkx3a
Domain Architecture
Description	Homeobox protein Nkx-3.1.

NKX32_HUMAN
θ value	θ > 10 (rank : 287)	NC score	0.084149 (rank : 125)
Query Neighborhood Hits	92	Target Neighborhood Hits	323	Shared Neighborhood Hits	14
SwissProt Accessions	P78367	Gene names	BAPX1, NKX3B
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

NKX32_MOUSE
θ value	θ > 10 (rank : 288)	NC score	0.083325 (rank : 129)
Query Neighborhood Hits	92	Target Neighborhood Hits	326	Shared Neighborhood Hits	14
SwissProt Accessions	P97503	Gene names	Bapx1, Nkx-3.2, Nkx3-2, Nkx3b
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

NKX61_HUMAN
θ value	θ > 10 (rank : 289)	NC score	0.095644 (rank : 83)
Query Neighborhood Hits	92	Target Neighborhood Hits	431	Shared Neighborhood Hits	16
SwissProt Accessions	P78426	Gene names	NKX6-1, NKX6A
Domain Architecture
Description	Homeobox protein Nkx-6.1.

NKX61_MOUSE
θ value	θ > 10 (rank : 290)	NC score	0.096000 (rank : 82)
Query Neighborhood Hits	92	Target Neighborhood Hits	439	Shared Neighborhood Hits	18
SwissProt Accessions	Q99MA9, Q9ERQ7	Gene names	Nkx6-1, Nkx6.1, Nkx6a
Domain Architecture
Description	Homeobox protein Nkx-6.1.

OTP_MOUSE
θ value	θ > 10 (rank : 291)	NC score	0.140856 (rank : 58)
Query Neighborhood Hits	92	Target Neighborhood Hits	387	Shared Neighborhood Hits	19
SwissProt Accessions	O09113	Gene names	Otp
Domain Architecture
Description	Homeobox protein orthopedia.

OTX1_HUMAN
θ value	θ > 10 (rank : 292)	NC score	0.137816 (rank : 60)
Query Neighborhood Hits	92	Target Neighborhood Hits	379	Shared Neighborhood Hits	20
SwissProt Accessions	P32242, Q53TG6	Gene names	OTX1
Domain Architecture
Description	Homeobox protein OTX1.

OTX1_MOUSE
θ value	θ > 10 (rank : 293)	NC score	0.137394 (rank : 61)
Query Neighborhood Hits	92	Target Neighborhood Hits	372	Shared Neighborhood Hits	18
SwissProt Accessions	P80205	Gene names	Otx1, Otx-1
Domain Architecture
Description	Homeobox protein OTX1.

OTX2_HUMAN
θ value	θ > 10 (rank : 294)	NC score	0.143008 (rank : 53)
Query Neighborhood Hits	92	Target Neighborhood Hits	341	Shared Neighborhood Hits	17
SwissProt Accessions	P32243, Q6GTV3, Q9HAW3, Q9P2R1	Gene names	OTX2
Domain Architecture
Description	Homeobox protein OTX2.

OTX2_MOUSE
θ value	θ > 10 (rank : 295)	NC score	0.142256 (rank : 55)
Query Neighborhood Hits	92	Target Neighborhood Hits	345	Shared Neighborhood Hits	17
SwissProt Accessions	P80206	Gene names	Otx2, Otx-2
Domain Architecture
Description	Homeobox protein OTX2.

PBX2_HUMAN
θ value	θ > 10 (rank : 296)	NC score	0.056896 (rank : 252)
Query Neighborhood Hits	92	Target Neighborhood Hits	350	Shared Neighborhood Hits	14
SwissProt Accessions	P40425	Gene names	PBX2, G17
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2) (Protein G17).

PBX2_MOUSE
θ value	θ > 10 (rank : 297)	NC score	0.056755 (rank : 253)
Query Neighborhood Hits	92	Target Neighborhood Hits	341	Shared Neighborhood Hits	14
SwissProt Accessions	O35984	Gene names	Pbx2
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2).

PBX3_HUMAN
θ value	θ > 10 (rank : 298)	NC score	0.054645 (rank : 260)
Query Neighborhood Hits	92	Target Neighborhood Hits	306	Shared Neighborhood Hits	14
SwissProt Accessions	P40426, Q96PF9, Q96PG0	Gene names	PBX3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX3_MOUSE
θ value	θ > 10 (rank : 299)	NC score	0.054652 (rank : 259)
Query Neighborhood Hits	92	Target Neighborhood Hits	306	Shared Neighborhood Hits	14
SwissProt Accessions	O35317, Q925W2	Gene names	Pbx3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX4_MOUSE
θ value	θ > 10 (rank : 300)	NC score	0.060104 (rank : 238)
Query Neighborhood Hits	92	Target Neighborhood Hits	324	Shared Neighborhood Hits	15
SwissProt Accessions	Q99NE9, Q8CFL2, Q99NE8	Gene names	Pbx4
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 4 (Homeobox protein PBX4).

PEPP1_HUMAN
θ value	θ > 10 (rank : 301)	NC score	0.128475 (rank : 68)
Query Neighborhood Hits	92	Target Neighborhood Hits	338	Shared Neighborhood Hits	13
SwissProt Accessions	Q8NHV9, O95030, Q3SYE0	Gene names	PEPP1, OTEX
Domain Architecture
Description	Paired-like homeobox protein PEPP-1 (Ovary-, testis- and epididymis- expressed gene protein).

PEPP2_HUMAN
θ value	θ > 10 (rank : 302)	NC score	0.139858 (rank : 59)
Query Neighborhood Hits	92	Target Neighborhood Hits	316	Shared Neighborhood Hits	13
SwissProt Accessions	Q9BQY4, Q9BR00	Gene names	PEPP2, THG1
Domain Architecture
Description	Paired-like homeobox protein PEPP-2 (Testis homeobox gene 1).

PHX2A_HUMAN
θ value	θ > 10 (rank : 303)	NC score	0.152293 (rank : 39)
Query Neighborhood Hits	92	Target Neighborhood Hits	345	Shared Neighborhood Hits	17
SwissProt Accessions	O14813, Q8IVZ2	Gene names	PHOX2A, ARIX, PMX2A
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (Aristaless homeobox protein homolog) (ARIX1 homeodomain protein).

PHX2A_MOUSE
θ value	θ > 10 (rank : 304)	NC score	0.151753 (rank : 41)
Query Neighborhood Hits	92	Target Neighborhood Hits	338	Shared Neighborhood Hits	17
SwissProt Accessions	Q62066	Gene names	Phox2a, Arix, Phox2, Pmx2, Pmx2a
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (PHOX2A homeodomain protein) (Aristaless homeobox protein homolog).

PHX2B_HUMAN
θ value	θ > 10 (rank : 305)	NC score	0.147396 (rank : 47)
Query Neighborhood Hits	92	Target Neighborhood Hits	407	Shared Neighborhood Hits	18
SwissProt Accessions	Q99453, Q6PJD9	Gene names	PHOX2B, PMX2B
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

PHX2B_MOUSE
θ value	θ > 10 (rank : 306)	NC score	0.147396 (rank : 48)
Query Neighborhood Hits	92	Target Neighborhood Hits	407	Shared Neighborhood Hits	18
SwissProt Accessions	O35690	Gene names	Phox2b, Pmx2b
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

PITX1_HUMAN
θ value	θ > 10 (rank : 307)	NC score	0.129933 (rank : 66)
Query Neighborhood Hits	92	Target Neighborhood Hits	353	Shared Neighborhood Hits	16
SwissProt Accessions	P78337, O14677, O60425, Q9BTI5	Gene names	PITX1, BFT, PTX1
Domain Architecture
Description	Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot).

PITX1_MOUSE
θ value	θ > 10 (rank : 308)	NC score	0.127275 (rank : 70)
Query Neighborhood Hits	92	Target Neighborhood Hits	362	Shared Neighborhood Hits	16
SwissProt Accessions	P70314, O54742, P70427	Gene names	Pitx1, Bft, Potx, Ptx1
Domain Architecture
Description	Pituitary homeobox 1 (Homeobox protein P-OTX) (Pituitary OTX-related factor) (Hindlimb expressed homeobox protein backfoot) (Ptx1).

PITX2_HUMAN
θ value	θ > 10 (rank : 309)	NC score	0.125556 (rank : 71)
Query Neighborhood Hits	92	Target Neighborhood Hits	381	Shared Neighborhood Hits	14
SwissProt Accessions	Q99697, O60578, O60579, O60580, Q9BY17	Gene names	PITX2, ARP1, RGS, RIEG, RIEG1
Domain Architecture
Description	Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription factor) (Solurshin) (ALL1-responsive protein ARP1).

PITX2_MOUSE
θ value	θ > 10 (rank : 310)	NC score	0.129665 (rank : 67)
Query Neighborhood Hits	92	Target Neighborhood Hits	383	Shared Neighborhood Hits	16
SwissProt Accessions	P97474, O08646, O70336, P97933, Q9JLA0, Q9QXB8, Q9R1V9, Q9Z141	Gene names	Pitx2, Arp1, Brx1, Otlx2, Ptx2, Rgs
Domain Architecture
Description	Pituitary homeobox 2 (Orthodenticle-like homeobox 2) (Solurshin) (ALL1-responsive protein ARP1) (BRX1 homeoprotein) (Paired-like homeodomain transcription factor Munc 30).

PITX3_HUMAN
θ value	θ > 10 (rank : 311)	NC score	0.135516 (rank : 63)
Query Neighborhood Hits	92	Target Neighborhood Hits	366	Shared Neighborhood Hits	16
SwissProt Accessions	O75364	Gene names	PITX3, PTX3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

PITX3_MOUSE
θ value	θ > 10 (rank : 312)	NC score	0.136413 (rank : 62)
Query Neighborhood Hits	92	Target Neighborhood Hits	380	Shared Neighborhood Hits	17
SwissProt Accessions	O35160	Gene names	Pitx3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

PO6F1_HUMAN
θ value	θ > 10 (rank : 313)	NC score	0.060968 (rank : 237)
Query Neighborhood Hits	92	Target Neighborhood Hits	370	Shared Neighborhood Hits	15
SwissProt Accessions	Q14863	Gene names	POU6F1, BRN5, MPOU, TCFB1
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (mPOU homeobox protein) (Brain-specific homeobox/POU domain protein 5) (Brain-5) (Brn-5 protein).

PO6F1_MOUSE
θ value	θ > 10 (rank : 314)	NC score	0.062289 (rank : 231)
Query Neighborhood Hits	92	Target Neighborhood Hits	581	Shared Neighborhood Hits	29
SwissProt Accessions	Q07916, Q91XK3	Gene names	Pou6f1, Emb
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (Octamer-binding transcription factor EMB) (Transcription regulatory protein MCP-1).

PO6F2_HUMAN
θ value	θ > 10 (rank : 315)	NC score	0.070330 (rank : 193)
Query Neighborhood Hits	92	Target Neighborhood Hits	618	Shared Neighborhood Hits	24
SwissProt Accessions	P78424, P78425, Q75ME8, Q86UM6, Q9UDS7	Gene names	POU6F2, RPF1
Domain Architecture
Description	POU domain, class 6, transcription factor 2 (Retina-derived POU-domain factor 1) (RPF-1).

PROP1_HUMAN
θ value	θ > 10 (rank : 316)	NC score	0.145555 (rank : 49)
Query Neighborhood Hits	92	Target Neighborhood Hits	354	Shared Neighborhood Hits	16
SwissProt Accessions	O75360	Gene names	PROP1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

PRRX1_HUMAN
θ value	θ > 10 (rank : 317)	NC score	0.169492 (rank : 21)
Query Neighborhood Hits	92	Target Neighborhood Hits	347	Shared Neighborhood Hits	19
SwissProt Accessions	P54821, O60807	Gene names	PRRX1, PMX1
Domain Architecture
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein PHOX1).

PRRX1_MOUSE
θ value	θ > 10 (rank : 318)	NC score	0.168930 (rank : 22)
Query Neighborhood Hits	92	Target Neighborhood Hits	346	Shared Neighborhood Hits	19
SwissProt Accessions	P63013, P43271, Q02810	Gene names	Prrx1, Pmx, Pmx1
Domain Architecture	No domain graphic available
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein mHox) (Homeobox protein K-2).

PRRX2_HUMAN
θ value	θ > 10 (rank : 319)	NC score	0.161568 (rank : 29)
Query Neighborhood Hits	92	Target Neighborhood Hits	348	Shared Neighborhood Hits	19
SwissProt Accessions	Q99811, Q9UIB3	Gene names	PRRX2, PMX2, PRX2
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Paired-related homeobox protein 2).

PRRX2_MOUSE
θ value	θ > 10 (rank : 320)	NC score	0.162661 (rank : 26)
Query Neighborhood Hits	92	Target Neighborhood Hits	351	Shared Neighborhood Hits	19
SwissProt Accessions	Q06348, Q61651	Gene names	Prrx2, Prx2, S8
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Homeobox protein S8).

PRRXL_MOUSE
θ value	θ > 10 (rank : 321)	NC score	0.165924 (rank : 23)
Query Neighborhood Hits	92	Target Neighborhood Hits	350	Shared Neighborhood Hits	17
SwissProt Accessions	Q8BYH0, Q8K3F8	Gene names	Prrxl1, Drg11
Domain Architecture	No domain graphic available
Description	Paired-related homeobox protein-like 1 (Dorsal root ganglion 11) (Homeobox protein DRG11).

RHOX5_MOUSE
θ value	θ > 10 (rank : 322)	NC score	0.088105 (rank : 109)
Query Neighborhood Hits	92	Target Neighborhood Hits	69	Shared Neighborhood Hits	7
SwissProt Accessions	P52651	Gene names	Rhox5, Pem
Domain Architecture	No domain graphic available
Description	Homeobox protein Rhox5 (Reproductive homeobox on chromosome X 5) (Homeobox protein Pem) (Placenta and embryonic expression protein).

RX_HUMAN
θ value	θ > 10 (rank : 323)	NC score	0.153109 (rank : 38)
Query Neighborhood Hits	92	Target Neighborhood Hits	423	Shared Neighborhood Hits	22
SwissProt Accessions	Q9Y2V3	Gene names	RAX, RX
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

RX_MOUSE
θ value	θ > 10 (rank : 324)	NC score	0.155563 (rank : 34)
Query Neighborhood Hits	92	Target Neighborhood Hits	429	Shared Neighborhood Hits	22
SwissProt Accessions	O35602, O08748	Gene names	Rax, Rx
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

SHOX2_HUMAN
θ value	θ > 10 (rank : 325)	NC score	0.142430 (rank : 54)
Query Neighborhood Hits	92	Target Neighborhood Hits	353	Shared Neighborhood Hits	17
SwissProt Accessions	O60902, O60465, O60467, O60903	Gene names	SHOX2, OG12X, SHOT
Domain Architecture
Description	Short stature homeobox protein 2 (Paired-related homeobox protein SHOT) (Homeobox protein Og12X).

SHOX2_MOUSE
θ value	θ > 10 (rank : 326)	NC score	0.141352 (rank : 57)
Query Neighborhood Hits	92	Target Neighborhood Hits	348	Shared Neighborhood Hits	17
SwissProt Accessions	P70390, P70369	Gene names	Shox2, Og12x, Prx3
Domain Architecture
Description	Short stature homeobox protein 2 (Homeobox protein Og12X) (OG-12) (Paired family homeodomain protein Prx3).

SHOX_HUMAN
θ value	θ > 10 (rank : 327)	NC score	0.144768 (rank : 50)
Query Neighborhood Hits	92	Target Neighborhood Hits	363	Shared Neighborhood Hits	17
SwissProt Accessions	O15266, O00412, O00413, O15267	Gene names	SHOX, PHOG
Domain Architecture
Description	Short stature homeobox protein (Short stature homeobox-containing protein) (Pseudoautosomal homeobox-containing osteogenic protein).

TITF1_HUMAN
θ value	θ > 10 (rank : 328)	NC score	0.077869 (rank : 163)
Query Neighborhood Hits	92	Target Neighborhood Hits	332	Shared Neighborhood Hits	14
SwissProt Accessions	P43699, O14954, O14955, Q9BRJ8	Gene names	TITF1, NKX2-1, NKX2A, TTF1
Domain Architecture
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1) (Homeobox protein NK-2 homolog A).

TITF1_MOUSE
θ value	θ > 10 (rank : 329)	NC score	0.075003 (rank : 171)
Query Neighborhood Hits	92	Target Neighborhood Hits	335	Shared Neighborhood Hits	14
SwissProt Accessions	P50220	Gene names	Titf1, Nkx-2.1, Nkx2-1, Ttf1
Domain Architecture	No domain graphic available
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1).

TLX1_HUMAN
θ value	θ > 10 (rank : 330)	NC score	0.093611 (rank : 89)
Query Neighborhood Hits	92	Target Neighborhood Hits	347	Shared Neighborhood Hits	15
SwissProt Accessions	P31314, O75699, Q9HCA0	Gene names	TLX1, HOX11, TCL3
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (TCL-3 proto-oncogene).

TLX1_MOUSE
θ value	θ > 10 (rank : 331)	NC score	0.092149 (rank : 97)
Query Neighborhood Hits	92	Target Neighborhood Hits	347	Shared Neighborhood Hits	14
SwissProt Accessions	P43345	Gene names	Tlx1, Hox11, Tlx-1
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (Homeobox TLX-1).

TLX2_HUMAN
θ value	θ > 10 (rank : 332)	NC score	0.092761 (rank : 93)
Query Neighborhood Hits	92	Target Neighborhood Hits	352	Shared Neighborhood Hits	15
SwissProt Accessions	O43763, Q9UQ48	Gene names	TLX2, HOX11L1, NCX
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Neural crest homeobox protein).

TLX2_MOUSE
θ value	θ > 10 (rank : 333)	NC score	0.092963 (rank : 90)
Query Neighborhood Hits	92	Target Neighborhood Hits	336	Shared Neighborhood Hits	14
SwissProt Accessions	Q61663	Gene names	Tlx2, Hox11l1, Tlx1l1
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Homeobox TLX-2) (PMUR10F).

TLX3_HUMAN
θ value	θ > 10 (rank : 334)	NC score	0.091277 (rank : 100)
Query Neighborhood Hits	92	Target Neighborhood Hits	403	Shared Neighborhood Hits	16
SwissProt Accessions	O43711, Q96AD3	Gene names	TLX3, HOX11L2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox protein Hox-11L2).

TLX3_MOUSE
θ value	θ > 10 (rank : 335)	NC score	0.088406 (rank : 106)
Query Neighborhood Hits	92	Target Neighborhood Hits	346	Shared Neighborhood Hits	15
SwissProt Accessions	O55144	Gene names	Tlx3, Hox11l2, Rnx, Tlx1l2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox TLX-3) (Homeobox protein Hox-11L2) (Respiratory neuron homeobox protein).

VAX1_HUMAN
θ value	θ > 10 (rank : 336)	NC score	0.092941 (rank : 91)
Query Neighborhood Hits	92	Target Neighborhood Hits	355	Shared Neighborhood Hits	13
SwissProt Accessions	Q5SQQ9, Q6ZSX0	Gene names	VAX1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

VAX1_MOUSE
θ value	θ > 10 (rank : 337)	NC score	0.091714 (rank : 99)
Query Neighborhood Hits	92	Target Neighborhood Hits	351	Shared Neighborhood Hits	13
SwissProt Accessions	Q2NKI2, O88880	Gene names	Vax1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

VAX2_HUMAN
θ value	θ > 10 (rank : 338)	NC score	0.092828 (rank : 92)
Query Neighborhood Hits	92	Target Neighborhood Hits	337	Shared Neighborhood Hits	13
SwissProt Accessions	Q9UIW0	Gene names	VAX2
Domain Architecture
Description	Ventral anterior homeobox 2.

VAX2_MOUSE
θ value	θ > 10 (rank : 339)	NC score	0.094054 (rank : 88)
Query Neighborhood Hits	92	Target Neighborhood Hits	338	Shared Neighborhood Hits	13
SwissProt Accessions	Q9WTP9	Gene names	Vax2, Vex
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 2 (Ventral retina homeodomain protein).

VSX1_HUMAN
θ value	θ > 10 (rank : 340)	NC score	0.165625 (rank : 24)
Query Neighborhood Hits	92	Target Neighborhood Hits	344	Shared Neighborhood Hits	21
SwissProt Accessions	Q9NZR4, Q5TF40, Q5TF41, Q9HCU3, Q9NU27	Gene names	VSX1, RINX
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

VSX1_MOUSE
θ value	θ > 10 (rank : 341)	NC score	0.161696 (rank : 28)
Query Neighborhood Hits	92	Target Neighborhood Hits	356	Shared Neighborhood Hits	22
SwissProt Accessions	Q91V10	Gene names	Vsx1, Rinx
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

ZFHX2_HUMAN
θ value	θ > 10 (rank : 342)	NC score	0.061913 (rank : 232)
Query Neighborhood Hits	92	Target Neighborhood Hits	1178	Shared Neighborhood Hits	25
SwissProt Accessions	Q9C0A1	Gene names	ZFHX2, KIAA1762
Domain Architecture
Description	Zinc finger homeobox protein 2.

ZHX1_HUMAN
θ value	θ > 10 (rank : 343)	NC score	0.050970 (rank : 275)
Query Neighborhood Hits	92	Target Neighborhood Hits	307	Shared Neighborhood Hits	16
SwissProt Accessions	Q9UKY1, Q8IWD8	Gene names	ZHX1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

ZHX1_MOUSE
θ value	θ > 10 (rank : 344)	NC score	0.054481 (rank : 261)
Query Neighborhood Hits	92	Target Neighborhood Hits	334	Shared Neighborhood Hits	19
SwissProt Accessions	P70121, Q8BQ68, Q8C6T4, Q8CJG3	Gene names	Zhx1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

Hits sorted by NC score

PAX9_HUMAN
NC score	0.999962 (rank : 1)	θ value	0 (rank : 1)
Query Neighborhood Hits	92	Target Neighborhood Hits	92	Shared Neighborhood Hits	92
SwissProt Accessions	P55771, Q99582, Q9UQR4	Gene names	PAX9
Domain Architecture
Description	Paired box protein Pax-9.

PAX9_MOUSE
NC score	0.995455 (rank : 2)	θ value	0 (rank : 2)
Query Neighborhood Hits	92	Target Neighborhood Hits	67	Shared Neighborhood Hits	54
SwissProt Accessions	P47242	Gene names	Pax9, Pax-9
Domain Architecture
Description	Paired box protein Pax-9.

PAX1_MOUSE
NC score	0.979832 (rank : 3)	θ value	1.13764e-111 (rank : 4)
Query Neighborhood Hits	92	Target Neighborhood Hits	69	Shared Neighborhood Hits	24
SwissProt Accessions	P09084, Q9R2B1	Gene names	Pax1, Pax-1
Domain Architecture
Description	Paired box protein Pax-1.

PAX1_HUMAN
NC score	0.979025 (rank : 4)	θ value	5.10665e-112 (rank : 3)
Query Neighborhood Hits	92	Target Neighborhood Hits	72	Shared Neighborhood Hits	22
SwissProt Accessions	P15863, Q642X9, Q6NTC0, Q9Y558	Gene names	PAX1, HUP48
Domain Architecture
Description	Paired box protein Pax-1 (HUP48).

PAX5_MOUSE
NC score	0.932176 (rank : 5)	θ value	1.61718e-49 (rank : 8)
Query Neighborhood Hits	92	Target Neighborhood Hits	106	Shared Neighborhood Hits	22
SwissProt Accessions	Q02650	Gene names	Pax5, Pax-5
Domain Architecture
Description	Paired box protein Pax-5 (B-cell-specific transcription factor) (BSAP).

PAX5_HUMAN
NC score	0.932160 (rank : 6)	θ value	1.61718e-49 (rank : 7)
Query Neighborhood Hits	92	Target Neighborhood Hits	106	Shared Neighborhood Hits	22
SwissProt Accessions	Q02548, O75933	Gene names	PAX5
Domain Architecture
Description	Paired box protein Pax-5 (B-cell-specific transcription factor) (BSAP).

PAX8_HUMAN
NC score	0.930514 (rank : 7)	θ value	2.1121e-49 (rank : 9)
Query Neighborhood Hits	92	Target Neighborhood Hits	56	Shared Neighborhood Hits	18
SwissProt Accessions	Q06710, Q09155, Q16337, Q16338, Q16339, Q96J49	Gene names	PAX8
Domain Architecture
Description	Paired box protein Pax-8.

PAX8_MOUSE
NC score	0.928884 (rank : 8)	θ value	2.1121e-49 (rank : 10)
Query Neighborhood Hits	92	Target Neighborhood Hits	62	Shared Neighborhood Hits	18
SwissProt Accessions	Q00288, P97342	Gene names	Pax8, Pax-8
Domain Architecture
Description	Paired box protein Pax-8.

PAX2_HUMAN
NC score	0.927055 (rank : 9)	θ value	5.02714e-51 (rank : 5)
Query Neighborhood Hits	92	Target Neighborhood Hits	84	Shared Neighborhood Hits	20
SwissProt Accessions	Q02962, Q15105, Q15110, Q15837	Gene names	PAX2
Domain Architecture
Description	Paired box protein Pax-2.

PAX2_MOUSE
NC score	0.925973 (rank : 10)	θ value	9.48078e-50 (rank : 6)
Query Neighborhood Hits	92	Target Neighborhood Hits	86	Shared Neighborhood Hits	19
SwissProt Accessions	P32114	Gene names	Pax2, Pax-2
Domain Architecture
Description	Paired box protein Pax-2.

PAX6_HUMAN
NC score	0.591425 (rank : 11)	θ value	1.41672e-45 (rank : 15)
Query Neighborhood Hits	92	Target Neighborhood Hits	383	Shared Neighborhood Hits	26
SwissProt Accessions	P26367, Q6N006, Q99413	Gene names	PAX6, AN2
Domain Architecture
Description	Paired box protein Pax-6 (Oculorhombin) (Aniridia type II protein).

PAX6_MOUSE
NC score	0.591425 (rank : 12)	θ value	1.41672e-45 (rank : 16)
Query Neighborhood Hits	92	Target Neighborhood Hits	383	Shared Neighborhood Hits	26
SwissProt Accessions	P63015, P32117, P70601, Q62222, Q64037, Q8CEI5, Q8VDB5, Q921Q8	Gene names	Pax6, Pax-6, Sey
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-6 (Oculorhombin).

PAX4_MOUSE
NC score	0.589477 (rank : 13)	θ value	1.73584e-35 (rank : 17)
Query Neighborhood Hits	92	Target Neighborhood Hits	370	Shared Neighborhood Hits	24
SwissProt Accessions	P32115, P97341, Q9QUR1, Q9R091	Gene names	Pax4, Pax-4
Domain Architecture
Description	Paired box protein Pax-4.

PAX4_HUMAN
NC score	0.583674 (rank : 14)	θ value	1.12514e-34 (rank : 18)
Query Neighborhood Hits	92	Target Neighborhood Hits	367	Shared Neighborhood Hits	25
SwissProt Accessions	O43316, O95161, Q6B0H0	Gene names	PAX4
Domain Architecture
Description	Paired box protein Pax-4.

PAX7_MOUSE
NC score	0.569893 (rank : 15)	θ value	3.98324e-48 (rank : 13)
Query Neighborhood Hits	92	Target Neighborhood Hits	422	Shared Neighborhood Hits	27
SwissProt Accessions	P47239, Q9ES16	Gene names	Pax7, Pax-7
Domain Architecture	No domain graphic available
Description	Paired box protein Pax-7.

PAX3_MOUSE
NC score	0.567325 (rank : 16)	θ value	1.04822e-48 (rank : 12)
Query Neighborhood Hits	92	Target Neighborhood Hits	478	Shared Neighborhood Hits	30
SwissProt Accessions	P24610, Q3UFQ9, Q8BRE7, Q9CXI6	Gene names	Pax3, Pax-3
Domain Architecture
Description	Paired box protein Pax-3.

PAX3_HUMAN
NC score	0.566165 (rank : 17)	θ value	1.04822e-48 (rank : 11)
Query Neighborhood Hits	92	Target Neighborhood Hits	513	Shared Neighborhood Hits	29
SwissProt Accessions	P23760, Q16448	Gene names	PAX3, HUP2
Domain Architecture
Description	Paired box protein Pax-3 (HUP2).

PAX7_HUMAN
NC score	0.565832 (rank : 18)	θ value	4.40402e-47 (rank : 14)
Query Neighborhood Hits	92	Target Neighborhood Hits	456	Shared Neighborhood Hits	28
SwissProt Accessions	P23759	Gene names	PAX7, HUP1
Domain Architecture
Description	Paired box protein Pax-7 (HUP1).

HOP_HUMAN
NC score	0.178338 (rank : 19)	θ value	θ > 10 (rank : 171)
Query Neighborhood Hits	92	Target Neighborhood Hits	107	Shared Neighborhood Hits	9
SwissProt Accessions	Q9BPY8, Q8N0V6, Q96CI1	Gene names	HOP, HOD, LAGY, NECC1, OB1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Lung cancer-associated Y protein) (Odd homeobox protein 1) (Not expressed in choriocarcinoma protein 1).

HOP_MOUSE
NC score	0.176946 (rank : 20)	θ value	θ > 10 (rank : 172)
Query Neighborhood Hits	92	Target Neighborhood Hits	102	Shared Neighborhood Hits	9
SwissProt Accessions	Q8R1H0, Q8C1N5, Q8CJ22	Gene names	Hop, Hod, Ob1
Domain Architecture	No domain graphic available
Description	Homeodomain-only protein (Homeobox-only protein) (Odd homeobox protein 1) (mOB1).

PRRX1_HUMAN
NC score	0.169492 (rank : 21)	θ value	θ > 10 (rank : 317)
Query Neighborhood Hits	92	Target Neighborhood Hits	347	Shared Neighborhood Hits	19
SwissProt Accessions	P54821, O60807	Gene names	PRRX1, PMX1
Domain Architecture
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein PHOX1).

PRRX1_MOUSE
NC score	0.168930 (rank : 22)	θ value	θ > 10 (rank : 318)
Query Neighborhood Hits	92	Target Neighborhood Hits	346	Shared Neighborhood Hits	19
SwissProt Accessions	P63013, P43271, Q02810	Gene names	Prrx1, Pmx, Pmx1
Domain Architecture	No domain graphic available
Description	Paired mesoderm homeobox protein 1 (PRX-1) (Paired-related homeobox protein 1) (Homeobox protein mHox) (Homeobox protein K-2).

PRRXL_MOUSE
NC score	0.165924 (rank : 23)	θ value	θ > 10 (rank : 321)
Query Neighborhood Hits	92	Target Neighborhood Hits	350	Shared Neighborhood Hits	17
SwissProt Accessions	Q8BYH0, Q8K3F8	Gene names	Prrxl1, Drg11
Domain Architecture	No domain graphic available
Description	Paired-related homeobox protein-like 1 (Dorsal root ganglion 11) (Homeobox protein DRG11).

VSX1_HUMAN
NC score	0.165625 (rank : 24)	θ value	θ > 10 (rank : 340)
Query Neighborhood Hits	92	Target Neighborhood Hits	344	Shared Neighborhood Hits	21
SwissProt Accessions	Q9NZR4, Q5TF40, Q5TF41, Q9HCU3, Q9NU27	Gene names	VSX1, RINX
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

CHX10_MOUSE
NC score	0.164238 (rank : 25)	θ value	θ > 10 (rank : 115)
Query Neighborhood Hits	92	Target Neighborhood Hits	340	Shared Neighborhood Hits	20
SwissProt Accessions	Q61412	Gene names	Chx10, Vsx2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

PRRX2_MOUSE
NC score	0.162661 (rank : 26)	θ value	θ > 10 (rank : 320)
Query Neighborhood Hits	92	Target Neighborhood Hits	351	Shared Neighborhood Hits	19
SwissProt Accessions	Q06348, Q61651	Gene names	Prrx2, Prx2, S8
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Homeobox protein S8).

CHX10_HUMAN
NC score	0.162502 (rank : 27)	θ value	θ > 10 (rank : 114)
Query Neighborhood Hits	92	Target Neighborhood Hits	340	Shared Neighborhood Hits	20
SwissProt Accessions	P58304	Gene names	CHX10, VSX2
Domain Architecture
Description	Homeobox protein CHX10 (Ceh-10 homeodomain-containing homolog).

VSX1_MOUSE
NC score	0.161696 (rank : 28)	θ value	θ > 10 (rank : 341)
Query Neighborhood Hits	92	Target Neighborhood Hits	356	Shared Neighborhood Hits	22
SwissProt Accessions	Q91V10	Gene names	Vsx1, Rinx
Domain Architecture
Description	Visual system homeobox 1 (Transcription factor VSX1) (Retinal inner nuclear layer homeobox protein) (Homeodomain protein RINX).

PRRX2_HUMAN
NC score	0.161568 (rank : 29)	θ value	θ > 10 (rank : 319)
Query Neighborhood Hits	92	Target Neighborhood Hits	348	Shared Neighborhood Hits	19
SwissProt Accessions	Q99811, Q9UIB3	Gene names	PRRX2, PMX2, PRX2
Domain Architecture
Description	Paired mesoderm homeobox protein 2 (PRX-2) (Paired-related homeobox protein 2).

DUX2_HUMAN
NC score	0.159080 (rank : 30)	θ value	θ > 10 (rank : 130)
Query Neighborhood Hits	92	Target Neighborhood Hits	173	Shared Neighborhood Hits	13
SwissProt Accessions	O75505	Gene names	DUX2
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 2.

ARX_HUMAN
NC score	0.157403 (rank : 31)	θ value	θ > 10 (rank : 97)
Query Neighborhood Hits	92	Target Neighborhood Hits	401	Shared Neighborhood Hits	20
SwissProt Accessions	Q96QS3	Gene names	ARX
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

ARX_MOUSE
NC score	0.156455 (rank : 32)	θ value	θ > 10 (rank : 98)
Query Neighborhood Hits	92	Target Neighborhood Hits	398	Shared Neighborhood Hits	19
SwissProt Accessions	O35085, Q9QYT4	Gene names	Arx
Domain Architecture
Description	Homeobox protein ARX (Aristaless-related homeobox).

ALX4_HUMAN
NC score	0.156297 (rank : 33)	θ value	θ > 10 (rank : 95)
Query Neighborhood Hits	92	Target Neighborhood Hits	394	Shared Neighborhood Hits	21
SwissProt Accessions	Q9H161, Q96JN7, Q9H198, Q9HAY9	Gene names	ALX4, KIAA1788
Domain Architecture
Description	Homeobox protein aristaless-like 4.

RX_MOUSE
NC score	0.155563 (rank : 34)	θ value	θ > 10 (rank : 324)
Query Neighborhood Hits	92	Target Neighborhood Hits	429	Shared Neighborhood Hits	22
SwissProt Accessions	O35602, O08748	Gene names	Rax, Rx
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

GSCL_MOUSE
NC score	0.154717 (rank : 35)	θ value	θ > 10 (rank : 147)
Query Neighborhood Hits	92	Target Neighborhood Hits	339	Shared Neighborhood Hits	15
SwissProt Accessions	P56916	Gene names	Gscl
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid-like (GSC-2).

ALX4_MOUSE
NC score	0.153735 (rank : 36)	θ value	θ > 10 (rank : 96)
Query Neighborhood Hits	92	Target Neighborhood Hits	369	Shared Neighborhood Hits	21
SwissProt Accessions	O35137	Gene names	Alx4
Domain Architecture
Description	Homeobox protein aristaless-like 4 (ALX-4).

ALX3_MOUSE
NC score	0.153486 (rank : 37)	θ value	θ > 10 (rank : 94)
Query Neighborhood Hits	92	Target Neighborhood Hits	386	Shared Neighborhood Hits	21
SwissProt Accessions	O70137	Gene names	Alx3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

RX_HUMAN
NC score	0.153109 (rank : 38)	θ value	θ > 10 (rank : 323)
Query Neighborhood Hits	92	Target Neighborhood Hits	423	Shared Neighborhood Hits	22
SwissProt Accessions	Q9Y2V3	Gene names	RAX, RX
Domain Architecture
Description	Retinal homeobox protein Rx (Retina and anterior neural fold homeobox protein).

PHX2A_HUMAN
NC score	0.152293 (rank : 39)	θ value	θ > 10 (rank : 303)
Query Neighborhood Hits	92	Target Neighborhood Hits	345	Shared Neighborhood Hits	17
SwissProt Accessions	O14813, Q8IVZ2	Gene names	PHOX2A, ARIX, PMX2A
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (Aristaless homeobox protein homolog) (ARIX1 homeodomain protein).

CART1_HUMAN
NC score	0.151753 (rank : 40)	θ value	θ > 10 (rank : 106)
Query Neighborhood Hits	92	Target Neighborhood Hits	348	Shared Neighborhood Hits	19
SwissProt Accessions	Q15699, Q546C8, Q96FH4	Gene names	CART1
Domain Architecture
Description	Cartilage homeoprotein 1 (CART-1).

PHX2A_MOUSE
NC score	0.151753 (rank : 41)	θ value	θ > 10 (rank : 304)
Query Neighborhood Hits	92	Target Neighborhood Hits	338	Shared Neighborhood Hits	17
SwissProt Accessions	Q62066	Gene names	Phox2a, Arix, Phox2, Pmx2, Pmx2a
Domain Architecture
Description	Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (PHOX2A homeodomain protein) (Aristaless homeobox protein homolog).

ALX3_HUMAN
NC score	0.151425 (rank : 42)	θ value	θ > 10 (rank : 93)
Query Neighborhood Hits	92	Target Neighborhood Hits	380	Shared Neighborhood Hits	21
SwissProt Accessions	O95076, O95075	Gene names	ALX3
Domain Architecture
Description	Homeobox protein aristaless-like 3 (Proline-rich transcription factor ALX3).

CART1_MOUSE
NC score	0.151127 (rank : 43)	θ value	θ > 10 (rank : 107)
Query Neighborhood Hits	92	Target Neighborhood Hits	344	Shared Neighborhood Hits	19
SwissProt Accessions	Q8C8B0, Q8C370	Gene names	Cart1
Domain Architecture	No domain graphic available
Description	Cartilage homeoprotein 1 (CART-1).

PROP1_MOUSE
NC score	0.150435 (rank : 44)	θ value	3.0926 (rank : 59)
Query Neighborhood Hits	92	Target Neighborhood Hits	361	Shared Neighborhood Hits	15
SwissProt Accessions	P97458	Gene names	Prop1, Prop-1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

GSCL_HUMAN
NC score	0.148241 (rank : 45)	θ value	θ > 10 (rank : 146)
Query Neighborhood Hits	92	Target Neighborhood Hits	343	Shared Neighborhood Hits	15
SwissProt Accessions	O15499	Gene names	GSCL
Domain Architecture
Description	Homeobox protein goosecoid-like (GSC-2).

CRX_MOUSE
NC score	0.147906 (rank : 46)	θ value	θ > 10 (rank : 117)
Query Neighborhood Hits	92	Target Neighborhood Hits	359	Shared Neighborhood Hits	20
SwissProt Accessions	O54751	Gene names	Crx
Domain Architecture
Description	Cone-rod homeobox protein.

PHX2B_HUMAN
NC score	0.147396 (rank : 47)	θ value	θ > 10 (rank : 305)
Query Neighborhood Hits	92	Target Neighborhood Hits	407	Shared Neighborhood Hits	18
SwissProt Accessions	Q99453, Q6PJD9	Gene names	PHOX2B, PMX2B
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

PHX2B_MOUSE
NC score	0.147396 (rank : 48)	θ value	θ > 10 (rank : 306)
Query Neighborhood Hits	92	Target Neighborhood Hits	407	Shared Neighborhood Hits	18
SwissProt Accessions	O35690	Gene names	Phox2b, Pmx2b
Domain Architecture
Description	Paired mesoderm homeobox protein 2B (Paired-like homeobox 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox).

PROP1_HUMAN
NC score	0.145555 (rank : 49)	θ value	θ > 10 (rank : 316)
Query Neighborhood Hits	92	Target Neighborhood Hits	354	Shared Neighborhood Hits	16
SwissProt Accessions	O75360	Gene names	PROP1
Domain Architecture
Description	Homeobox protein prophet of Pit-1 (PROP-1) (Pituitary-specific homeodomain factor).

SHOX_HUMAN
NC score	0.144768 (rank : 50)	θ value	θ > 10 (rank : 327)
Query Neighborhood Hits	92	Target Neighborhood Hits	363	Shared Neighborhood Hits	17
SwissProt Accessions	O15266, O00412, O00413, O15267	Gene names	SHOX, PHOG
Domain Architecture
Description	Short stature homeobox protein (Short stature homeobox-containing protein) (Pseudoautosomal homeobox-containing osteogenic protein).

CRX_HUMAN
NC score	0.144148 (rank : 51)	θ value	θ > 10 (rank : 116)
Query Neighborhood Hits	92	Target Neighborhood Hits	360	Shared Neighborhood Hits	18
SwissProt Accessions	O43186	Gene names	CRX, CORD2
Domain Architecture
Description	Cone-rod homeobox protein.

GSC_HUMAN
NC score	0.143878 (rank : 52)	θ value	θ > 10 (rank : 148)
Query Neighborhood Hits	92	Target Neighborhood Hits	369	Shared Neighborhood Hits	18
SwissProt Accessions	P56915, Q86YR1	Gene names	GSC
Domain Architecture	No domain graphic available
Description	Homeobox protein goosecoid.

OTX2_HUMAN
NC score	0.143008 (rank : 53)	θ value	θ > 10 (rank : 294)
Query Neighborhood Hits	92	Target Neighborhood Hits	341	Shared Neighborhood Hits	17
SwissProt Accessions	P32243, Q6GTV3, Q9HAW3, Q9P2R1	Gene names	OTX2
Domain Architecture
Description	Homeobox protein OTX2.

SHOX2_HUMAN
NC score	0.142430 (rank : 54)	θ value	θ > 10 (rank : 325)
Query Neighborhood Hits	92	Target Neighborhood Hits	353	Shared Neighborhood Hits	17
SwissProt Accessions	O60902, O60465, O60467, O60903	Gene names	SHOX2, OG12X, SHOT
Domain Architecture
Description	Short stature homeobox protein 2 (Paired-related homeobox protein SHOT) (Homeobox protein Og12X).

OTX2_MOUSE
NC score	0.142256 (rank : 55)	θ value	θ > 10 (rank : 295)
Query Neighborhood Hits	92	Target Neighborhood Hits	345	Shared Neighborhood Hits	17
SwissProt Accessions	P80206	Gene names	Otx2, Otx-2
Domain Architecture
Description	Homeobox protein OTX2.

GSC_MOUSE
NC score	0.141558 (rank : 56)	θ value	θ > 10 (rank : 149)
Query Neighborhood Hits	92	Target Neighborhood Hits	368	Shared Neighborhood Hits	18
SwissProt Accessions	Q02591	Gene names	Gsc
Domain Architecture
Description	Homeobox protein goosecoid.

SHOX2_MOUSE
NC score	0.141352 (rank : 57)	θ value	θ > 10 (rank : 326)
Query Neighborhood Hits	92	Target Neighborhood Hits	348	Shared Neighborhood Hits	17
SwissProt Accessions	P70390, P70369	Gene names	Shox2, Og12x, Prx3
Domain Architecture
Description	Short stature homeobox protein 2 (Homeobox protein Og12X) (OG-12) (Paired family homeodomain protein Prx3).

OTP_MOUSE
NC score	0.140856 (rank : 58)	θ value	θ > 10 (rank : 291)
Query Neighborhood Hits	92	Target Neighborhood Hits	387	Shared Neighborhood Hits	19
SwissProt Accessions	O09113	Gene names	Otp
Domain Architecture
Description	Homeobox protein orthopedia.

PEPP2_HUMAN
NC score	0.139858 (rank : 59)	θ value	θ > 10 (rank : 302)
Query Neighborhood Hits	92	Target Neighborhood Hits	316	Shared Neighborhood Hits	13
SwissProt Accessions	Q9BQY4, Q9BR00	Gene names	PEPP2, THG1
Domain Architecture
Description	Paired-like homeobox protein PEPP-2 (Testis homeobox gene 1).

OTX1_HUMAN
NC score	0.137816 (rank : 60)	θ value	θ > 10 (rank : 292)
Query Neighborhood Hits	92	Target Neighborhood Hits	379	Shared Neighborhood Hits	20
SwissProt Accessions	P32242, Q53TG6	Gene names	OTX1
Domain Architecture
Description	Homeobox protein OTX1.

OTX1_MOUSE
NC score	0.137394 (rank : 61)	θ value	θ > 10 (rank : 293)
Query Neighborhood Hits	92	Target Neighborhood Hits	372	Shared Neighborhood Hits	18
SwissProt Accessions	P80205	Gene names	Otx1, Otx-1
Domain Architecture
Description	Homeobox protein OTX1.

PITX3_MOUSE
NC score	0.136413 (rank : 62)	θ value	θ > 10 (rank : 312)
Query Neighborhood Hits	92	Target Neighborhood Hits	380	Shared Neighborhood Hits	17
SwissProt Accessions	O35160	Gene names	Pitx3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

PITX3_HUMAN
NC score	0.135516 (rank : 63)	θ value	θ > 10 (rank : 311)
Query Neighborhood Hits	92	Target Neighborhood Hits	366	Shared Neighborhood Hits	16
SwissProt Accessions	O75364	Gene names	PITX3, PTX3
Domain Architecture
Description	Pituitary homeobox 3 (Homeobox protein PITX3).

ESX1L_HUMAN
NC score	0.131062 (rank : 64)	θ value	θ > 10 (rank : 137)
Query Neighborhood Hits	92	Target Neighborhood Hits	498	Shared Neighborhood Hits	19
SwissProt Accessions	Q8N693, Q7Z6K7	Gene names	ESX1L, ESX1R
Domain Architecture
Description	Extraembryonic, spermatogenesis, homeobox 1-like protein.

BARH2_HUMAN
NC score	0.130079 (rank : 65)	θ value	0.000158464 (rank : 19)
Query Neighborhood Hits	92	Target Neighborhood Hits	419	Shared Neighborhood Hits	18
SwissProt Accessions	Q9NY43, Q7Z4N7	Gene names	BARHL2
Domain Architecture
Description	BarH-like 2 homeobox protein.

PITX1_HUMAN
NC score	0.129933 (rank : 66)	θ value	θ > 10 (rank : 307)
Query Neighborhood Hits	92	Target Neighborhood Hits	353	Shared Neighborhood Hits	16
SwissProt Accessions	P78337, O14677, O60425, Q9BTI5	Gene names	PITX1, BFT, PTX1
Domain Architecture
Description	Pituitary homeobox 1 (Hindlimb expressed homeobox protein backfoot).

PITX2_MOUSE
NC score	0.129665 (rank : 67)	θ value	θ > 10 (rank : 310)
Query Neighborhood Hits	92	Target Neighborhood Hits	383	Shared Neighborhood Hits	16
SwissProt Accessions	P97474, O08646, O70336, P97933, Q9JLA0, Q9QXB8, Q9R1V9, Q9Z141	Gene names	Pitx2, Arp1, Brx1, Otlx2, Ptx2, Rgs
Domain Architecture
Description	Pituitary homeobox 2 (Orthodenticle-like homeobox 2) (Solurshin) (ALL1-responsive protein ARP1) (BRX1 homeoprotein) (Paired-like homeodomain transcription factor Munc 30).

PEPP1_HUMAN
NC score	0.128475 (rank : 68)	θ value	θ > 10 (rank : 301)
Query Neighborhood Hits	92	Target Neighborhood Hits	338	Shared Neighborhood Hits	13
SwissProt Accessions	Q8NHV9, O95030, Q3SYE0	Gene names	PEPP1, OTEX
Domain Architecture
Description	Paired-like homeobox protein PEPP-1 (Ovary-, testis- and epididymis- expressed gene protein).

DUX4_HUMAN
NC score	0.127393 (rank : 69)	θ value	θ > 10 (rank : 132)
Query Neighborhood Hits	92	Target Neighborhood Hits	403	Shared Neighborhood Hits	15
SwissProt Accessions	Q9UBX2	Gene names	DUX4, DUX10
Domain Architecture	No domain graphic available
Description	Double homeobox protein 4 (Double homeobox protein 10) (Double homeobox protein 4/10).

PITX1_MOUSE
NC score	0.127275 (rank : 70)	θ value	θ > 10 (rank : 308)
Query Neighborhood Hits	92	Target Neighborhood Hits	362	Shared Neighborhood Hits	16
SwissProt Accessions	P70314, O54742, P70427	Gene names	Pitx1, Bft, Potx, Ptx1
Domain Architecture
Description	Pituitary homeobox 1 (Homeobox protein P-OTX) (Pituitary OTX-related factor) (Hindlimb expressed homeobox protein backfoot) (Ptx1).

PITX2_HUMAN
NC score	0.125556 (rank : 71)	θ value	θ > 10 (rank : 309)
Query Neighborhood Hits	92	Target Neighborhood Hits	381	Shared Neighborhood Hits	14
SwissProt Accessions	Q99697, O60578, O60579, O60580, Q9BY17	Gene names	PITX2, ARP1, RGS, RIEG, RIEG1
Domain Architecture
Description	Pituitary homeobox 2 (RIEG bicoid-related homeobox transcription factor) (Solurshin) (ALL1-responsive protein ARP1).

DUX1_HUMAN
NC score	0.125176 (rank : 72)	θ value	θ > 10 (rank : 129)
Query Neighborhood Hits	92	Target Neighborhood Hits	330	Shared Neighborhood Hits	13
SwissProt Accessions	O43812	Gene names	DUX1
Domain Architecture	No domain graphic available
Description	Double homeobox protein 1.

DUX5_HUMAN
NC score	0.124142 (rank : 73)	θ value	θ > 10 (rank : 133)
Query Neighborhood Hits	92	Target Neighborhood Hits	330	Shared Neighborhood Hits	13
SwissProt Accessions	Q96PT3	Gene names	DUX5
Domain Architecture	No domain graphic available
Description	Double homeobox protein 5.

DUX3_HUMAN
NC score	0.120390 (rank : 74)	θ value	θ > 10 (rank : 131)
Query Neighborhood Hits	92	Target Neighborhood Hits	312	Shared Neighborhood Hits	13
SwissProt Accessions	Q96PT4, Q9UND2	Gene names	DUX3
Domain Architecture	No domain graphic available
Description	Putative double homeobox protein 3.

BARH2_MOUSE
NC score	0.119480 (rank : 75)	θ value	0.0431538 (rank : 20)
Query Neighborhood Hits	92	Target Neighborhood Hits	397	Shared Neighborhood Hits	18
SwissProt Accessions	Q8VIB5, Q66L43	Gene names	Barhl2, Barh1, Mbh1
Domain Architecture	No domain graphic available
Description	BarH-like 2 homeobox protein (Bar-class homeodomain protein MBH1) (Homeobox protein B-H1).

HESX1_HUMAN
NC score	0.113677 (rank : 76)	θ value	θ > 10 (rank : 154)
Query Neighborhood Hits	92	Target Neighborhood Hits	326	Shared Neighborhood Hits	13
SwissProt Accessions	Q9UBX0, Q99667	Gene names	HESX1, HANF
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (hAnf).

HESX1_MOUSE
NC score	0.109587 (rank : 77)	θ value	θ > 10 (rank : 155)
Query Neighborhood Hits	92	Target Neighborhood Hits	331	Shared Neighborhood Hits	13
SwissProt Accessions	Q61658, Q61047	Gene names	Hesx1, Hes-1, Rpx
Domain Architecture
Description	Homeobox expressed in ES cells 1 (Homeobox protein ANF) (Anterior- restricted homeobox protein) (Rathke pouch homeo box).

BARH1_HUMAN
NC score	0.107348 (rank : 78)	θ value	θ > 10 (rank : 99)
Query Neighborhood Hits	92	Target Neighborhood Hits	373	Shared Neighborhood Hits	15
SwissProt Accessions	Q9BZE3, Q9NY88	Gene names	BARHL1
Domain Architecture
Description	BarH-like 1 homeobox protein.

NKX12_MOUSE
NC score	0.105746 (rank : 79)	θ value	θ > 10 (rank : 273)
Query Neighborhood Hits	92	Target Neighborhood Hits	332	Shared Neighborhood Hits	16
SwissProt Accessions	P42580, Q9JHF2, Q9JKW5, Q9JKW6, Q9JKW9, Q9JKX0, Q9JKX1	Gene names	Nkx1-2, Nkx1.1, Sax1
Domain Architecture
Description	NK1 transcription factor-related protein 2 (Homeobox protein SAX-1) (NKX-1.1).

BARH1_MOUSE
NC score	0.103167 (rank : 80)	θ value	θ > 10 (rank : 100)
Query Neighborhood Hits	92	Target Neighborhood Hits	350	Shared Neighborhood Hits	13
SwissProt Accessions	P63157, Q9JK26	Gene names	Barhl1, Bhx1, Mbh2
Domain Architecture	No domain graphic available
Description	BarH-like 1 homeobox protein (Bar-class homeodomain protein MBH2) (BarH-related homeobox protein 1).

EMX1_HUMAN
NC score	0.096838 (rank : 81)	θ value	θ > 10 (rank : 134)
Query Neighborhood Hits	92	Target Neighborhood Hits	336	Shared Neighborhood Hits	14
SwissProt Accessions	Q04741, Q86XB0	Gene names	EMX1
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX1 (Empty spiracles homolog 1) (Empty spiracles- like protein 1).

NKX61_MOUSE
NC score	0.096000 (rank : 82)	θ value	θ > 10 (rank : 290)
Query Neighborhood Hits	92	Target Neighborhood Hits	439	Shared Neighborhood Hits	18
SwissProt Accessions	Q99MA9, Q9ERQ7	Gene names	Nkx6-1, Nkx6.1, Nkx6a
Domain Architecture
Description	Homeobox protein Nkx-6.1.

NKX61_HUMAN
NC score	0.095644 (rank : 83)	θ value	θ > 10 (rank : 289)
Query Neighborhood Hits	92	Target Neighborhood Hits	431	Shared Neighborhood Hits	16
SwissProt Accessions	P78426	Gene names	NKX6-1, NKX6A
Domain Architecture
Description	Homeobox protein Nkx-6.1.

GBX2_MOUSE
NC score	0.095569 (rank : 84)	θ value	θ > 10 (rank : 145)
Query Neighborhood Hits	92	Target Neighborhood Hits	326	Shared Neighborhood Hits	13
SwissProt Accessions	P48031	Gene names	Gbx2, Mmoxa, Stra7
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2) (Homeobox protein STRA7).

EMX2_MOUSE
NC score	0.095349 (rank : 85)	θ value	θ > 10 (rank : 136)
Query Neighborhood Hits	92	Target Neighborhood Hits	340	Shared Neighborhood Hits	15
SwissProt Accessions	Q04744, Q80UE7	Gene names	Emx2, Emx-2
Domain Architecture	No domain graphic available
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

EMX2_HUMAN
NC score	0.095208 (rank : 86)	θ value	θ > 10 (rank : 135)
Query Neighborhood Hits	92	Target Neighborhood Hits	341	Shared Neighborhood Hits	14
SwissProt Accessions	Q04743, Q96NN8, Q9BQF4	Gene names	EMX2
Domain Architecture
Description	Homeobox protein EMX2 (Empty spiracles homolog 2) (Empty spiracles- like protein 2).

GBX2_HUMAN
NC score	0.094187 (rank : 87)	θ value	θ > 10 (rank : 144)
Query Neighborhood Hits	92	Target Neighborhood Hits	322	Shared Neighborhood Hits	13
SwissProt Accessions	P52951, O43833, Q53RX5, Q9Y5Y1	Gene names	GBX2
Domain Architecture
Description	Homeobox protein GBX-2 (Gastrulation and brain-specific homeobox protein 2).

VAX2_MOUSE
NC score	0.094054 (rank : 88)	θ value	θ > 10 (rank : 339)
Query Neighborhood Hits	92	Target Neighborhood Hits	338	Shared Neighborhood Hits	13
SwissProt Accessions	Q9WTP9	Gene names	Vax2, Vex
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 2 (Ventral retina homeodomain protein).

TLX1_HUMAN
NC score	0.093611 (rank : 89)	θ value	θ > 10 (rank : 330)
Query Neighborhood Hits	92	Target Neighborhood Hits	347	Shared Neighborhood Hits	15
SwissProt Accessions	P31314, O75699, Q9HCA0	Gene names	TLX1, HOX11, TCL3
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (TCL-3 proto-oncogene).

TLX2_MOUSE
NC score	0.092963 (rank : 90)	θ value	θ > 10 (rank : 333)
Query Neighborhood Hits	92	Target Neighborhood Hits	336	Shared Neighborhood Hits	14
SwissProt Accessions	Q61663	Gene names	Tlx2, Hox11l1, Tlx1l1
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Homeobox TLX-2) (PMUR10F).

VAX1_HUMAN
NC score	0.092941 (rank : 91)	θ value	θ > 10 (rank : 336)
Query Neighborhood Hits	92	Target Neighborhood Hits	355	Shared Neighborhood Hits	13
SwissProt Accessions	Q5SQQ9, Q6ZSX0	Gene names	VAX1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

VAX2_HUMAN
NC score	0.092828 (rank : 92)	θ value	θ > 10 (rank : 338)
Query Neighborhood Hits	92	Target Neighborhood Hits	337	Shared Neighborhood Hits	13
SwissProt Accessions	Q9UIW0	Gene names	VAX2
Domain Architecture
Description	Ventral anterior homeobox 2.

TLX2_HUMAN
NC score	0.092761 (rank : 93)	θ value	θ > 10 (rank : 332)
Query Neighborhood Hits	92	Target Neighborhood Hits	352	Shared Neighborhood Hits	15
SwissProt Accessions	O43763, Q9UQ48	Gene names	TLX2, HOX11L1, NCX
Domain Architecture
Description	T-cell leukemia homeobox protein 2 (Homeobox protein Hox-11L1) (Neural crest homeobox protein).

BARX2_HUMAN
NC score	0.092748 (rank : 94)	θ value	θ > 10 (rank : 103)
Query Neighborhood Hits	92	Target Neighborhood Hits	387	Shared Neighborhood Hits	14
SwissProt Accessions	Q9UMQ3, O43518	Gene names	BARX2
Domain Architecture
Description	Homeobox protein BarH-like 2.

BARX2_MOUSE
NC score	0.092345 (rank : 95)	θ value	θ > 10 (rank : 104)
Query Neighborhood Hits	92	Target Neighborhood Hits	335	Shared Neighborhood Hits	14
SwissProt Accessions	O08686	Gene names	Barx2
Domain Architecture
Description	Homeobox protein BarH-like 2.

GBX1_MOUSE
NC score	0.092259 (rank : 96)	θ value	θ > 10 (rank : 143)
Query Neighborhood Hits	92	Target Neighborhood Hits	350	Shared Neighborhood Hits	13
SwissProt Accessions	P82976, Q8CGW5	Gene names	Gbx1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

TLX1_MOUSE
NC score	0.092149 (rank : 97)	θ value	θ > 10 (rank : 331)
Query Neighborhood Hits	92	Target Neighborhood Hits	347	Shared Neighborhood Hits	14
SwissProt Accessions	P43345	Gene names	Tlx1, Hox11, Tlx-1
Domain Architecture
Description	T-cell leukemia homeobox protein 1 (Homeobox protein Hox-11) (Homeobox TLX-1).

GBX1_HUMAN
NC score	0.091874 (rank : 98)	θ value	θ > 10 (rank : 142)
Query Neighborhood Hits	92	Target Neighborhood Hits	334	Shared Neighborhood Hits	14
SwissProt Accessions	Q14549	Gene names	GBX1
Domain Architecture	No domain graphic available
Description	Homeobox protein GBX-1 (Gastrulation and brain-specific homeobox protein 1).

VAX1_MOUSE
NC score	0.091714 (rank : 99)	θ value	θ > 10 (rank : 337)
Query Neighborhood Hits	92	Target Neighborhood Hits	351	Shared Neighborhood Hits	13
SwissProt Accessions	Q2NKI2, O88880	Gene names	Vax1
Domain Architecture	No domain graphic available
Description	Ventral anterior homeobox 1.

TLX3_HUMAN
NC score	0.091277 (rank : 100)	θ value	θ > 10 (rank : 334)
Query Neighborhood Hits	92	Target Neighborhood Hits	403	Shared Neighborhood Hits	16
SwissProt Accessions	O43711, Q96AD3	Gene names	TLX3, HOX11L2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox protein Hox-11L2).

HME1_MOUSE
NC score	0.089775 (rank : 101)	θ value	θ > 10 (rank : 164)
Query Neighborhood Hits	92	Target Neighborhood Hits	397	Shared Neighborhood Hits	15
SwissProt Accessions	P09065	Gene names	En1, En-1
Domain Architecture
Description	Homeobox protein engrailed-1 (Mo-En-1).

HME1_HUMAN
NC score	0.089738 (rank : 102)	θ value	θ > 10 (rank : 163)
Query Neighborhood Hits	92	Target Neighborhood Hits	384	Shared Neighborhood Hits	15
SwissProt Accessions	Q05925	Gene names	EN1
Domain Architecture
Description	Homeobox protein engrailed-1 (Hu-En-1).

HME2_HUMAN
NC score	0.089329 (rank : 103)	θ value	θ > 10 (rank : 165)
Query Neighborhood Hits	92	Target Neighborhood Hits	355	Shared Neighborhood Hits	16
SwissProt Accessions	P19622	Gene names	EN2
Domain Architecture
Description	Homeobox protein engrailed-2 (Hu-En-2).

HME2_MOUSE
NC score	0.089066 (rank : 104)	θ value	θ > 10 (rank : 166)
Query Neighborhood Hits	92	Target Neighborhood Hits	352	Shared Neighborhood Hits	15
SwissProt Accessions	P09066	Gene names	En2, En-2
Domain Architecture
Description	Homeobox protein engrailed-2 (Mo-En-2).

MEOX2_HUMAN
NC score	0.088977 (rank : 105)	θ value	θ > 10 (rank : 266)
Query Neighborhood Hits	92	Target Neighborhood Hits	340	Shared Neighborhood Hits	15
SwissProt Accessions	P50222, O75263, Q9UPL6	Gene names	MEOX2, GAX, MOX2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth arrest-specific homeobox).

TLX3_MOUSE
NC score	0.088406 (rank : 106)	θ value	θ > 10 (rank : 335)
Query Neighborhood Hits	92	Target Neighborhood Hits	346	Shared Neighborhood Hits	15
SwissProt Accessions	O55144	Gene names	Tlx3, Hox11l2, Rnx, Tlx1l2
Domain Architecture
Description	T-cell leukemia homeobox protein 3 (Homeobox TLX-3) (Homeobox protein Hox-11L2) (Respiratory neuron homeobox protein).

DLX2_HUMAN
NC score	0.088265 (rank : 107)	θ value	θ > 10 (rank : 121)
Query Neighborhood Hits	92	Target Neighborhood Hits	355	Shared Neighborhood Hits	17
SwissProt Accessions	Q07687	Gene names	DLX2
Domain Architecture
Description	Homeobox protein DLX-2.

MEOX2_MOUSE
NC score	0.088114 (rank : 108)	θ value	θ > 10 (rank : 267)
Query Neighborhood Hits	92	Target Neighborhood Hits	341	Shared Neighborhood Hits	16
SwissProt Accessions	P32443, Q544T6	Gene names	Meox2, Gax, Mox-2, Mox2
Domain Architecture
Description	Homeobox protein MOX-2 (Mesenchyme homeobox 2).

RHOX5_MOUSE
NC score	0.088105 (rank : 109)	θ value	θ > 10 (rank : 322)
Query Neighborhood Hits	92	Target Neighborhood Hits	69	Shared Neighborhood Hits	7
SwissProt Accessions	P52651	Gene names	Rhox5, Pem
Domain Architecture	No domain graphic available
Description	Homeobox protein Rhox5 (Reproductive homeobox on chromosome X 5) (Homeobox protein Pem) (Placenta and embryonic expression protein).

HLX1_MOUSE
NC score	0.088034 (rank : 110)	θ value	θ > 10 (rank : 159)
Query Neighborhood Hits	92	Target Neighborhood Hits	362	Shared Neighborhood Hits	13
SwissProt Accessions	Q61670	Gene names	Hlx1, Hlx
Domain Architecture
Description	Homeobox protein HLX1.

HMX3_MOUSE
NC score	0.087976 (rank : 111)	θ value	θ > 10 (rank : 168)
Query Neighborhood Hits	92	Target Neighborhood Hits	342	Shared Neighborhood Hits	13
SwissProt Accessions	P42581	Gene names	Hmx3, Nkx-5.1, Nkx5-1
Domain Architecture
Description	Homeobox protein HMX3 (Homeobox protein Nkx-5.1).

EVX1_MOUSE
NC score	0.087673 (rank : 112)	θ value	θ > 10 (rank : 139)
Query Neighborhood Hits	92	Target Neighborhood Hits	350	Shared Neighborhood Hits	14
SwissProt Accessions	P23683	Gene names	Evx1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

DBX1_MOUSE
NC score	0.087462 (rank : 113)	θ value	θ > 10 (rank : 118)
Query Neighborhood Hits	92	Target Neighborhood Hits	346	Shared Neighborhood Hits	13
SwissProt Accessions	P52950	Gene names	Dbx1, Dbx
Domain Architecture
Description	Homeobox protein DBX1.

DLX2_MOUSE
NC score	0.087434 (rank : 114)	θ value	θ > 10 (rank : 122)
Query Neighborhood Hits	92	Target Neighborhood Hits	352	Shared Neighborhood Hits	14
SwissProt Accessions	P40764	Gene names	Dlx2, Tes-1, Tes1
Domain Architecture
Description	Homeobox protein DLX-2 (Homeobox protein TES-1).

EVX1_HUMAN
NC score	0.087357 (rank : 115)	θ value	θ > 10 (rank : 138)
Query Neighborhood Hits	92	Target Neighborhood Hits	349	Shared Neighborhood Hits	13
SwissProt Accessions	P49640	Gene names	EVX1
Domain Architecture
Description	Homeobox even-skipped homolog protein 1 (EVX-1).

HMX2_MOUSE
NC score	0.087166 (rank : 116)	θ value	θ > 10 (rank : 167)
Query Neighborhood Hits	92	Target Neighborhood Hits	354	Shared Neighborhood Hits	15
SwissProt Accessions	P43687, Q8R1Q2	Gene names	Hmx2, Nkx-5.2, Nkx5-2
Domain Architecture
Description	Homeobox protein HMX2 (Homeobox protein Nkx-5.2).

HLX1_HUMAN
NC score	0.086600 (rank : 117)	θ value	θ > 10 (rank : 158)
Query Neighborhood Hits	92	Target Neighborhood Hits	370	Shared Neighborhood Hits	13
SwissProt Accessions	Q14774, Q15988	Gene names	HLX1
Domain Architecture
Description	Homeobox protein HLX1 (Homeobox protein HB24).

EVX2_MOUSE
NC score	0.086323 (rank : 118)	θ value	θ > 10 (rank : 141)
Query Neighborhood Hits	92	Target Neighborhood Hits	327	Shared Neighborhood Hits	13
SwissProt Accessions	P49749	Gene names	Evx2, Evx-2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

EVX2_HUMAN
NC score	0.086035 (rank : 119)	θ value	θ > 10 (rank : 140)
Query Neighborhood Hits	92	Target Neighborhood Hits	325	Shared Neighborhood Hits	13
SwissProt Accessions	Q03828	Gene names	EVX2
Domain Architecture
Description	Homeobox even-skipped homolog protein 2 (EVX-2).

LBX1_HUMAN
NC score	0.085557 (rank : 120)	θ value	θ > 10 (rank : 242)
Query Neighborhood Hits	92	Target Neighborhood Hits	357	Shared Neighborhood Hits	14
SwissProt Accessions	P52954	Gene names	LBX1
Domain Architecture
Description	Transcription factor LBX1.

MEOX1_HUMAN
NC score	0.085532 (rank : 121)	θ value	θ > 10 (rank : 264)
Query Neighborhood Hits	92	Target Neighborhood Hits	342	Shared Neighborhood Hits	14
SwissProt Accessions	P50221	Gene names	MEOX1, MOX1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

CDX2_MOUSE
NC score	0.085042 (rank : 122)	θ value	θ > 10 (rank : 111)
Query Neighborhood Hits	92	Target Neighborhood Hits	336	Shared Neighborhood Hits	15
SwissProt Accessions	P43241	Gene names	Cdx2, Cdx-2
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2).

NKX31_MOUSE
NC score	0.084722 (rank : 123)	θ value	θ > 10 (rank : 286)
Query Neighborhood Hits	92	Target Neighborhood Hits	379	Shared Neighborhood Hits	16
SwissProt Accessions	P97436, O09087	Gene names	Nkx3-1, Nkx-3.1, Nkx3a
Domain Architecture
Description	Homeobox protein Nkx-3.1.

HLXB9_HUMAN
NC score	0.084575 (rank : 124)	θ value	θ > 10 (rank : 160)
Query Neighborhood Hits	92	Target Neighborhood Hits	336	Shared Neighborhood Hits	15
SwissProt Accessions	P50219, Q9Y648	Gene names	HLXB9
Domain Architecture
Description	Homeobox protein HB9.

NKX32_HUMAN
NC score	0.084149 (rank : 125)	θ value	θ > 10 (rank : 287)
Query Neighborhood Hits	92	Target Neighborhood Hits	323	Shared Neighborhood Hits	14
SwissProt Accessions	P78367	Gene names	BAPX1, NKX3B
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

MSX2_MOUSE
NC score	0.083968 (rank : 126)	θ value	θ > 10 (rank : 271)
Query Neighborhood Hits	92	Target Neighborhood Hits	345	Shared Neighborhood Hits	16
SwissProt Accessions	Q03358, Q63856	Gene names	Msx2, Hox-8.1, Msx-2
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8.1).

HHEX_MOUSE
NC score	0.083786 (rank : 127)	θ value	θ > 10 (rank : 157)
Query Neighborhood Hits	92	Target Neighborhood Hits	350	Shared Neighborhood Hits	15
SwissProt Accessions	P43120	Gene names	Hhex, Prhx
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

BARX1_HUMAN
NC score	0.083675 (rank : 128)	θ value	θ > 10 (rank : 101)
Query Neighborhood Hits	92	Target Neighborhood Hits	326	Shared Neighborhood Hits	13
SwissProt Accessions	Q9HBU1	Gene names	BARX1
Domain Architecture
Description	Homeobox protein BarH-like 1.

NKX32_MOUSE
NC score	0.083325 (rank : 129)	θ value	θ > 10 (rank : 288)
Query Neighborhood Hits	92	Target Neighborhood Hits	326	Shared Neighborhood Hits	14
SwissProt Accessions	P97503	Gene names	Bapx1, Nkx-3.2, Nkx3-2, Nkx3b
Domain Architecture
Description	Homeobox protein Nkx-3.2 (Bagpipe homeobox protein homolog 1).

MSX3_MOUSE
NC score	0.083205 (rank : 130)	θ value	θ > 10 (rank : 272)
Query Neighborhood Hits	92	Target Neighborhood Hits	330	Shared Neighborhood Hits	13
SwissProt Accessions	P70354, P70246, Q03360, Q80W10	Gene names	Msx3, Msx-3
Domain Architecture
Description	Homeobox protein MSX-3.

LHX8_MOUSE
NC score	0.083155 (rank : 131)	θ value	θ > 10 (rank : 257)
Query Neighborhood Hits	92	Target Neighborhood Hits	406	Shared Neighborhood Hits	14
SwissProt Accessions	O35652, O70163, O88707	Gene names	Lhx8, Lhx7
Domain Architecture
Description	LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3).

DLX1_MOUSE
NC score	0.083103 (rank : 132)	θ value	θ > 10 (rank : 120)
Query Neighborhood Hits	92	Target Neighborhood Hits	343	Shared Neighborhood Hits	14
SwissProt Accessions	Q64317	Gene names	Dlx1
Domain Architecture
Description	Homeobox protein DLX-1.

MSX2_HUMAN
NC score	0.083092 (rank : 133)	θ value	θ > 10 (rank : 270)
Query Neighborhood Hits	92	Target Neighborhood Hits	337	Shared Neighborhood Hits	14
SwissProt Accessions	P35548	Gene names	MSX2, HOX8
Domain Architecture
Description	Homeobox protein MSX-2 (Hox-8).

MSX1_MOUSE
NC score	0.082643 (rank : 134)	θ value	θ > 10 (rank : 269)
Query Neighborhood Hits	92	Target Neighborhood Hits	322	Shared Neighborhood Hits	14
SwissProt Accessions	P13297	Gene names	Msx1, Hox7, Hox7.1
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7) (Hox- 7.1).

HLXB9_MOUSE
NC score	0.082583 (rank : 135)	θ value	θ > 10 (rank : 161)
Query Neighborhood Hits	92	Target Neighborhood Hits	354	Shared Neighborhood Hits	15
SwissProt Accessions	Q9QZW9	Gene names	Hlxb9
Domain Architecture
Description	Homeobox protein HB9.

HHEX_HUMAN
NC score	0.082545 (rank : 136)	θ value	θ > 10 (rank : 156)
Query Neighborhood Hits	92	Target Neighborhood Hits	358	Shared Neighborhood Hits	15
SwissProt Accessions	Q03014	Gene names	HHEX, HEX, PRH, PRHX
Domain Architecture
Description	Homeobox protein PRH (Hematopoietically expressed homeobox) (Homeobox protein HEX).

DLX1_HUMAN
NC score	0.082495 (rank : 137)	θ value	θ > 10 (rank : 119)
Query Neighborhood Hits	92	Target Neighborhood Hits	343	Shared Neighborhood Hits	14
SwissProt Accessions	P56177, Q53ZU4, Q8IYB2	Gene names	DLX1
Domain Architecture
Description	Homeobox protein DLX-1.

BSH_MOUSE
NC score	0.082420 (rank : 138)	θ value	θ > 10 (rank : 105)
Query Neighborhood Hits	92	Target Neighborhood Hits	349	Shared Neighborhood Hits	15
SwissProt Accessions	Q810B3	Gene names	Bsx
Domain Architecture	No domain graphic available
Description	Brain-specific homeobox protein homolog.

MEOX1_MOUSE
NC score	0.082395 (rank : 139)	θ value	θ > 10 (rank : 265)
Query Neighborhood Hits	92	Target Neighborhood Hits	345	Shared Neighborhood Hits	15
SwissProt Accessions	P32442	Gene names	Meox1, Mox-1, Mox1
Domain Architecture
Description	Homeobox protein MOX-1 (Mesenchyme homeobox 1).

BARX1_MOUSE
NC score	0.082349 (rank : 140)	θ value	θ > 10 (rank : 102)
Query Neighborhood Hits	92	Target Neighborhood Hits	324	Shared Neighborhood Hits	13
SwissProt Accessions	Q9ER42, O09066, P70159, Q9ERV2	Gene names	Barx1
Domain Architecture
Description	Homeobox protein BarH-like 1.

NKX25_HUMAN
NC score	0.081812 (rank : 141)	θ value	θ > 10 (rank : 280)
Query Neighborhood Hits	92	Target Neighborhood Hits	338	Shared Neighborhood Hits	14
SwissProt Accessions	P52952	Gene names	NKX2-5, CSX, NKX2.5, NKX2E
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

NKX23_HUMAN
NC score	0.081726 (rank : 142)	θ value	θ > 10 (rank : 276)
Query Neighborhood Hits	92	Target Neighborhood Hits	346	Shared Neighborhood Hits	14
SwissProt Accessions	Q8TAU0, Q9NYS6	Gene names	NKX2-3, NKX23, NKX2C
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NKX-2.3) (Homeobox protein NK-2 homolog C).

LHX2_HUMAN
NC score	0.081672 (rank : 143)	θ value	θ > 10 (rank : 246)
Query Neighborhood Hits	92	Target Neighborhood Hits	432	Shared Neighborhood Hits	14
SwissProt Accessions	P50458, O95860, Q8N1Z3	Gene names	LHX2, LH2
Domain Architecture
Description	LIM/homeobox protein Lhx2 (Homeobox protein LH-2).

MSX1_HUMAN
NC score	0.081419 (rank : 144)	θ value	θ > 10 (rank : 268)
Query Neighborhood Hits	92	Target Neighborhood Hits	374	Shared Neighborhood Hits	14
SwissProt Accessions	P28360, Q96NY4	Gene names	MSX1, HOX7
Domain Architecture
Description	Homeobox protein MSX-1 (Msh homeobox 1-like protein) (Hox-7).

LBX1_MOUSE
NC score	0.081360 (rank : 145)	θ value	θ > 10 (rank : 243)
Query Neighborhood Hits	92	Target Neighborhood Hits	349	Shared Neighborhood Hits	14
SwissProt Accessions	P52955	Gene names	Lbx1, Lbx1h
Domain Architecture
Description	Transcription factor LBX1.

NKX25_MOUSE
NC score	0.081299 (rank : 146)	θ value	θ > 10 (rank : 281)
Query Neighborhood Hits	92	Target Neighborhood Hits	347	Shared Neighborhood Hits	16
SwissProt Accessions	P42582, P97335	Gene names	Nkx2-5, Csx, Nkx-2.5, Nkx2e
Domain Architecture
Description	Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E) (Cardiac- specific homeobox) (Homeobox protein CSX).

NKX24_MOUSE
NC score	0.081200 (rank : 147)	θ value	θ > 10 (rank : 279)
Query Neighborhood Hits	92	Target Neighborhood Hits	356	Shared Neighborhood Hits	14
SwissProt Accessions	Q9EQM3, Q9EQM4	Gene names	Nkx2-4, Nkx2d
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

DLX3_HUMAN
NC score	0.080887 (rank : 148)	θ value	8.99809 (rank : 85)
Query Neighborhood Hits	92	Target Neighborhood Hits	369	Shared Neighborhood Hits	19
SwissProt Accessions	O60479	Gene names	DLX3
Domain Architecture
Description	Homeobox protein DLX-3.

LHX61_HUMAN
NC score	0.080496 (rank : 149)	θ value	θ > 10 (rank : 254)
Query Neighborhood Hits	92	Target Neighborhood Hits	412	Shared Neighborhood Hits	15
SwissProt Accessions	Q9UPM6, Q5T7S8, Q9NTK3, Q9UPM5	Gene names	LHX6, LHX6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1 (Lhx6).

DLX5_HUMAN
NC score	0.080469 (rank : 150)	θ value	θ > 10 (rank : 126)
Query Neighborhood Hits	92	Target Neighborhood Hits	405	Shared Neighborhood Hits	18
SwissProt Accessions	P56178, Q9UPL1	Gene names	DLX5
Domain Architecture
Description	Homeobox protein DLX-5.

LHX2_MOUSE
NC score	0.080359 (rank : 151)	θ value	θ > 10 (rank : 247)
Query Neighborhood Hits	92	Target Neighborhood Hits	431	Shared Neighborhood Hits	14
SwissProt Accessions	Q9Z0S2	Gene names	Lhx2
Domain Architecture
Description	LIM/homeobox protein Lhx2.

NKX23_MOUSE
NC score	0.080204 (rank : 152)	θ value	θ > 10 (rank : 277)
Query Neighborhood Hits	92	Target Neighborhood Hits	340	Shared Neighborhood Hits	14
SwissProt Accessions	P97334, Q9QZ60, Q9WV67	Gene names	Nkx2-3, Nkx-2.3, Nkx2c
Domain Architecture
Description	Homeobox protein Nkx-2.3 (Homeobox protein NK-2 homolog C) (Nkx2-C) (Homeobox protein NK-2 homolog 3).

LHX61_MOUSE
NC score	0.079927 (rank : 153)	θ value	θ > 10 (rank : 255)
Query Neighborhood Hits	92	Target Neighborhood Hits	396	Shared Neighborhood Hits	15
SwissProt Accessions	Q9R1R0, Q9R1R1	Gene names	Lhx6.1
Domain Architecture
Description	LIM/homeobox protein Lhx6.1.

HXB3_HUMAN
NC score	0.079455 (rank : 154)	θ value	θ > 10 (rank : 199)
Query Neighborhood Hits	92	Target Neighborhood Hits	559	Shared Neighborhood Hits	25
SwissProt Accessions	P14651, O95615, P17484	Gene names	HOXB3, HOX2G
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2G) (Hox-2.7).

LHX6_MOUSE
NC score	0.079122 (rank : 155)	θ value	θ > 10 (rank : 256)
Query Neighborhood Hits	92	Target Neighborhood Hits	399	Shared Neighborhood Hits	14
SwissProt Accessions	O88706	Gene names	Lhx6
Domain Architecture
Description	LIM/homeobox protein Lhx6.

DLX4_HUMAN
NC score	0.078958 (rank : 156)	θ value	θ > 10 (rank : 124)
Query Neighborhood Hits	92	Target Neighborhood Hits	350	Shared Neighborhood Hits	13
SwissProt Accessions	Q92988, O60480, Q13265, Q6PJK0, Q9HBE0	Gene names	DLX4, BP1, DLX7, DLX8
Domain Architecture	No domain graphic available
Description	Homeobox protein DLX-4 (DLX-7) (DLX-8) (Beta protein 1).

DLX4_MOUSE
NC score	0.078752 (rank : 157)	θ value	θ > 10 (rank : 125)
Query Neighborhood Hits	92	Target Neighborhood Hits	352	Shared Neighborhood Hits	13
SwissProt Accessions	P70436, Q3UM51, Q8R4I3	Gene names	Dlx4, Dlx7
Domain Architecture
Description	Homeobox protein DLX-4 (DLX-7).

DLX3_MOUSE
NC score	0.078651 (rank : 158)	θ value	θ > 10 (rank : 123)
Query Neighborhood Hits	92	Target Neighborhood Hits	367	Shared Neighborhood Hits	17
SwissProt Accessions	Q64205	Gene names	Dlx3
Domain Architecture
Description	Homeobox protein DLX-3.

HXB3_MOUSE
NC score	0.078605 (rank : 159)	θ value	θ > 10 (rank : 200)
Query Neighborhood Hits	92	Target Neighborhood Hits	493	Shared Neighborhood Hits	22
SwissProt Accessions	P09026, P10285, Q4PJ06, Q61680	Gene names	Hoxb3, Hox-2.7, Hoxb-3
Domain Architecture
Description	Homeobox protein Hox-B3 (Hox-2.7) (Homeobox protein MH-23).

NKX31_HUMAN
NC score	0.078363 (rank : 160)	θ value	θ > 10 (rank : 285)
Query Neighborhood Hits	92	Target Neighborhood Hits	331	Shared Neighborhood Hits	14
SwissProt Accessions	Q99801, O15465, Q9H2P4, Q9H2P5, Q9H2P6, Q9H2P7, Q9HBG0	Gene names	NKX3-1, NKX3.1, NKX3A
Domain Architecture
Description	Homeobox protein Nkx-3.1.

NKX24_HUMAN
NC score	0.078250 (rank : 161)	θ value	θ > 10 (rank : 278)
Query Neighborhood Hits	92	Target Neighborhood Hits	366	Shared Neighborhood Hits	14
SwissProt Accessions	Q9H2Z4	Gene names	NKX2-4, NKX2D
Domain Architecture
Description	Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4) (Homeobox protein NK-2 homolog D).

DLX6_HUMAN
NC score	0.078132 (rank : 162)	θ value	θ > 10 (rank : 128)
Query Neighborhood Hits	92	Target Neighborhood Hits	341	Shared Neighborhood Hits	14
SwissProt Accessions	P56179, Q3ZAR6, Q9UPL2	Gene names	DLX6
Domain Architecture
Description	Homeobox protein DLX-6.

TITF1_HUMAN
NC score	0.077869 (rank : 163)	θ value	θ > 10 (rank : 328)
Query Neighborhood Hits	92	Target Neighborhood Hits	332	Shared Neighborhood Hits	14
SwissProt Accessions	P43699, O14954, O14955, Q9BRJ8	Gene names	TITF1, NKX2-1, NKX2A, TTF1
Domain Architecture
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1) (Homeobox protein NK-2 homolog A).

DLX5_MOUSE
NC score	0.077799 (rank : 164)	θ value	θ > 10 (rank : 127)
Query Neighborhood Hits	92	Target Neighborhood Hits	434	Shared Neighborhood Hits	18
SwissProt Accessions	P70396, O54876, O54877, O54878, Q9JJ45	Gene names	Dlx5
Domain Architecture
Description	Homeobox protein DLX-5.

IPF1_MOUSE
NC score	0.077671 (rank : 165)	θ value	θ > 10 (rank : 241)
Query Neighborhood Hits	92	Target Neighborhood Hits	340	Shared Neighborhood Hits	16
SwissProt Accessions	P52946	Gene names	Ipf1, Pdx1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Islet/duodenum homeobox 1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Pancreas/duodenum homeobox 1).

CDX1_MOUSE
NC score	0.077020 (rank : 166)	θ value	θ > 10 (rank : 109)
Query Neighborhood Hits	92	Target Neighborhood Hits	379	Shared Neighborhood Hits	15
SwissProt Accessions	P18111, Q8VCF7	Gene names	Cdx1, Cdx-1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

CDX1_HUMAN
NC score	0.076796 (rank : 167)	θ value	θ > 10 (rank : 108)
Query Neighborhood Hits	92	Target Neighborhood Hits	382	Shared Neighborhood Hits	14
SwissProt Accessions	P47902, Q4VAU4, Q9NYK8	Gene names	CDX1
Domain Architecture
Description	Homeobox protein CDX-1 (Caudal-type homeobox protein 1).

IPF1_HUMAN
NC score	0.076225 (rank : 168)	θ value	θ > 10 (rank : 240)
Query Neighborhood Hits	92	Target Neighborhood Hits	330	Shared Neighborhood Hits	16
SwissProt Accessions	P52945, O60594	Gene names	IPF1, PDX1
Domain Architecture
Description	Insulin promoter factor 1 (IPF-1) (Pancreas/duodenum homeobox 1) (PDX- 1) (Islet/duodenum homeobox-1) (IDX-1) (Somatostatin-transactivating factor 1) (STF-1) (Insulin upstream factor 1) (IUF-1) (Glucose- sensitive factor) (GSF).

HXA4_MOUSE
NC score	0.075618 (rank : 169)	θ value	θ > 10 (rank : 184)
Query Neighborhood Hits	92	Target Neighborhood Hits	379	Shared Neighborhood Hits	17
SwissProt Accessions	P06798, Q61684, Q64388, Q8BPE6	Gene names	Hoxa4, Hox-1.4, Hoxa-4
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1.4) (Homeobox protein MH-3).

CDX2_HUMAN
NC score	0.075219 (rank : 170)	θ value	θ > 10 (rank : 110)
Query Neighborhood Hits	92	Target Neighborhood Hits	330	Shared Neighborhood Hits	14
SwissProt Accessions	Q99626, O00503, Q969L8	Gene names	CDX2, CDX3
Domain Architecture
Description	Homeobox protein CDX-2 (Caudal-type homeobox protein 2) (CDX-3).

TITF1_MOUSE
NC score	0.075003 (rank : 171)	θ value	θ > 10 (rank : 329)
Query Neighborhood Hits	92	Target Neighborhood Hits	335	Shared Neighborhood Hits	14
SwissProt Accessions	P50220	Gene names	Titf1, Nkx-2.1, Nkx2-1, Ttf1
Domain Architecture	No domain graphic available
Description	Thyroid transcription factor 1 (Thyroid nuclear factor 1) (TTF-1) (Homeobox protein Nkx-2.1).

HXA3_HUMAN
NC score	0.074999 (rank : 172)	θ value	θ > 10 (rank : 181)
Query Neighborhood Hits	92	Target Neighborhood Hits	535	Shared Neighborhood Hits	22
SwissProt Accessions	O43365	Gene names	HOXA3, HOX1E
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1E).

NKX26_MOUSE
NC score	0.074710 (rank : 173)	θ value	θ > 10 (rank : 282)
Query Neighborhood Hits	92	Target Neighborhood Hits	343	Shared Neighborhood Hits	14
SwissProt Accessions	P43688	Gene names	Nkx2-6, Nkx-2.6, Nkx2f
Domain Architecture
Description	Homeobox protein Nkx-2.6 (Homeobox protein NK-2 homolog F).

HXD4_MOUSE
NC score	0.073707 (rank : 174)	θ value	θ > 10 (rank : 237)
Query Neighborhood Hits	92	Target Neighborhood Hits	339	Shared Neighborhood Hits	16
SwissProt Accessions	P10628, P97451, Q3UXL6	Gene names	Hoxd4, Hox-4.2, Hoxd-4
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4.2) (Hox-5.1).

HXA4_HUMAN
NC score	0.073666 (rank : 175)	θ value	θ > 10 (rank : 183)
Query Neighborhood Hits	92	Target Neighborhood Hits	370	Shared Neighborhood Hits	18
SwissProt Accessions	Q00056, O43366	Gene names	HOXA4, HOX1D
Domain Architecture
Description	Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4).

HXD4_HUMAN
NC score	0.073412 (rank : 176)	θ value	θ > 10 (rank : 236)
Query Neighborhood Hits	92	Target Neighborhood Hits	337	Shared Neighborhood Hits	15
SwissProt Accessions	P09016, Q96AU0	Gene names	HOXD4, HOX4B
Domain Architecture
Description	Homeobox protein Hox-D4 (Hox-4B) (Hox-5.1) (HHO.C13).

HXB2_MOUSE
NC score	0.073244 (rank : 177)	θ value	θ > 10 (rank : 198)
Query Neighborhood Hits	92	Target Neighborhood Hits	350	Shared Neighborhood Hits	15
SwissProt Accessions	P0C1T1	Gene names	Hoxb2, Hox-2.8
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-B2 (Hox-2.8).

HXB4_HUMAN
NC score	0.072809 (rank : 178)	θ value	θ > 10 (rank : 201)
Query Neighborhood Hits	92	Target Neighborhood Hits	376	Shared Neighborhood Hits	19
SwissProt Accessions	P17483, Q9NTA0	Gene names	HOXB4, HOX2F
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2F) (Hox-2.6).

CDX4_HUMAN
NC score	0.072270 (rank : 179)	θ value	θ > 10 (rank : 112)
Query Neighborhood Hits	92	Target Neighborhood Hits	366	Shared Neighborhood Hits	15
SwissProt Accessions	O14627, Q5JS20	Gene names	CDX4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

LHX9_MOUSE
NC score	0.072209 (rank : 180)	θ value	θ > 10 (rank : 259)
Query Neighborhood Hits	92	Target Neighborhood Hits	445	Shared Neighborhood Hits	14
SwissProt Accessions	Q9WUH2, Q9QYQ5, Q9QYQ6, Q9QZ00, Q9WU44	Gene names	Lhx9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

HXC4_MOUSE
NC score	0.072150 (rank : 181)	θ value	θ > 10 (rank : 217)
Query Neighborhood Hits	92	Target Neighborhood Hits	365	Shared Neighborhood Hits	17
SwissProt Accessions	Q08624	Gene names	Hoxc4, Hox-3.5, Hoxc-4
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3.5).

HXB4_MOUSE
NC score	0.072093 (rank : 182)	θ value	θ > 10 (rank : 202)
Query Neighborhood Hits	92	Target Neighborhood Hits	375	Shared Neighborhood Hits	19
SwissProt Accessions	P10284, Q3UZB4, Q4VBG0	Gene names	Hoxb4, Hox-2.6, Hoxb-4
Domain Architecture
Description	Homeobox protein Hox-B4 (Hox-2.6).

GSH2_HUMAN
NC score	0.072011 (rank : 183)	θ value	θ > 10 (rank : 150)
Query Neighborhood Hits	92	Target Neighborhood Hits	324	Shared Neighborhood Hits	14
SwissProt Accessions	Q9BZM3	Gene names	GSH2
Domain Architecture
Description	Homeobox protein GSH-2.

CDX4_MOUSE
NC score	0.071726 (rank : 184)	θ value	θ > 10 (rank : 113)
Query Neighborhood Hits	92	Target Neighborhood Hits	378	Shared Neighborhood Hits	17
SwissProt Accessions	Q07424	Gene names	Cdx4, Cdx-4
Domain Architecture
Description	Homeobox protein CDX-4 (Caudal-type homeobox protein 4).

HXB6_HUMAN
NC score	0.071609 (rank : 185)	θ value	θ > 10 (rank : 205)
Query Neighborhood Hits	92	Target Neighborhood Hits	307	Shared Neighborhood Hits	14
SwissProt Accessions	P17509, P09068, Q9HB11, Q9UGH2	Gene names	HOXB6, HOX2B
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2B) (Hox-2.2) (HU-2).

HXB6_MOUSE
NC score	0.071581 (rank : 186)	θ value	θ > 10 (rank : 206)
Query Neighborhood Hits	92	Target Neighborhood Hits	309	Shared Neighborhood Hits	14
SwissProt Accessions	P09023	Gene names	Hoxb6, Hox-2.2, Hoxb-6
Domain Architecture
Description	Homeobox protein Hox-B6 (Hox-2.2) (Homeobox protein MH-22A).

GSHI_MOUSE
NC score	0.071501 (rank : 187)	θ value	θ > 10 (rank : 153)
Query Neighborhood Hits	92	Target Neighborhood Hits	313	Shared Neighborhood Hits	14
SwissProt Accessions	P31315	Gene names	Gsh1, Gsh-1
Domain Architecture
Description	Homeobox protein GSH-1.

LHX1_MOUSE
NC score	0.071246 (rank : 188)	θ value	θ > 10 (rank : 245)
Query Neighborhood Hits	92	Target Neighborhood Hits	453	Shared Neighborhood Hits	15
SwissProt Accessions	P63006, P36199	Gene names	Lhx1, Lim-1, Lim1
Domain Architecture	No domain graphic available
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

GSH2_MOUSE
NC score	0.070667 (rank : 189)	θ value	θ > 10 (rank : 151)
Query Neighborhood Hits	92	Target Neighborhood Hits	319	Shared Neighborhood Hits	14
SwissProt Accessions	P31316	Gene names	Gsh2, Gsh-2
Domain Architecture
Description	Homeobox protein GSH-2.

LHX9_HUMAN
NC score	0.070455 (rank : 190)	θ value	θ > 10 (rank : 258)
Query Neighborhood Hits	92	Target Neighborhood Hits	444	Shared Neighborhood Hits	14
SwissProt Accessions	Q9NQ69, Q5VUE3, Q9BYU6, Q9NQ70	Gene names	LHX9
Domain Architecture
Description	LIM/homeobox protein Lhx9.

PO6F2_MOUSE
NC score	0.070448 (rank : 191)	θ value	6.88961 (rank : 81)
Query Neighborhood Hits	92	Target Neighborhood Hits	639	Shared Neighborhood Hits	28
SwissProt Accessions	Q8BJI4	Gene names	Pou6f2
Domain Architecture	No domain graphic available
Description	POU domain, class 6, transcription factor 2.

GSHI_HUMAN
NC score	0.070355 (rank : 192)	θ value	θ > 10 (rank : 152)
Query Neighborhood Hits	92	Target Neighborhood Hits	314	Shared Neighborhood Hits	15
SwissProt Accessions	Q9H4S2	Gene names	GSH1
Domain Architecture
Description	Homeobox protein GSH-1.

PO6F2_HUMAN
NC score	0.070330 (rank : 193)	θ value	θ > 10 (rank : 315)
Query Neighborhood Hits	92	Target Neighborhood Hits	618	Shared Neighborhood Hits	24
SwissProt Accessions	P78424, P78425, Q75ME8, Q86UM6, Q9UDS7	Gene names	POU6F2, RPF1
Domain Architecture
Description	POU domain, class 6, transcription factor 2 (Retina-derived POU-domain factor 1) (RPF-1).

HXA3_MOUSE
NC score	0.070301 (rank : 194)	θ value	θ > 10 (rank : 182)
Query Neighborhood Hits	92	Target Neighborhood Hits	558	Shared Neighborhood Hits	22
SwissProt Accessions	P02831, Q4V9Z8, Q61197	Gene names	Hoxa3, Hox-1.5, Hoxa-3
Domain Architecture
Description	Homeobox protein Hox-A3 (Hox-1.5) (MO-10).

LHX1_HUMAN
NC score	0.070031 (rank : 195)	θ value	θ > 10 (rank : 244)
Query Neighborhood Hits	92	Target Neighborhood Hits	453	Shared Neighborhood Hits	15
SwissProt Accessions	P48742, Q3MIW0	Gene names	LHX1, LIM1
Domain Architecture
Description	LIM/homeobox protein Lhx1 (LIM homeobox protein 1) (Homeobox protein Lim-1).

HXC5_HUMAN
NC score	0.069881 (rank : 196)	θ value	θ > 10 (rank : 218)
Query Neighborhood Hits	92	Target Neighborhood Hits	316	Shared Neighborhood Hits	15
SwissProt Accessions	Q00444	Gene names	HOXC5, HOX3D
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3D) (CP11).

HXB1_HUMAN
NC score	0.069820 (rank : 197)	θ value	θ > 10 (rank : 195)
Query Neighborhood Hits	92	Target Neighborhood Hits	356	Shared Neighborhood Hits	14
SwissProt Accessions	P14653	Gene names	HOXB1, HOX2I
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2I).

HXC4_HUMAN
NC score	0.069650 (rank : 198)	θ value	θ > 10 (rank : 216)
Query Neighborhood Hits	92	Target Neighborhood Hits	361	Shared Neighborhood Hits	16
SwissProt Accessions	P09017	Gene names	HOXC4, HOX3E
Domain Architecture
Description	Homeobox protein Hox-C4 (Hox-3E) (CP19).

NKX28_HUMAN
NC score	0.069615 (rank : 199)	θ value	θ > 10 (rank : 283)
Query Neighborhood Hits	92	Target Neighborhood Hits	352	Shared Neighborhood Hits	14
SwissProt Accessions	O15522	Gene names	NKX2-8, NKX-2.8, NKX2G, NKX2H
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H).

HXC5_MOUSE
NC score	0.069604 (rank : 200)	θ value	θ > 10 (rank : 219)
Query Neighborhood Hits	92	Target Neighborhood Hits	316	Shared Neighborhood Hits	15
SwissProt Accessions	P32043, Q8BJW4	Gene names	Hoxc5, Hox-3.4, Hoxc-5
Domain Architecture
Description	Homeobox protein Hox-C5 (Hox-3.4) (Hox-6.2).

HXA6_MOUSE
NC score	0.069438 (rank : 201)	θ value	θ > 10 (rank : 188)
Query Neighborhood Hits	92	Target Neighborhood Hits	304	Shared Neighborhood Hits	14
SwissProt Accessions	P09092, Q9JI98	Gene names	Hoxa6, Hox-1.2, Hoxa-6
Domain Architecture
Description	Homeobox protein Hox-A6 (Hox-1.2) (M5-4).

HXB1_MOUSE
NC score	0.069131 (rank : 202)	θ value	θ > 10 (rank : 196)
Query Neighborhood Hits	92	Target Neighborhood Hits	341	Shared Neighborhood Hits	14
SwissProt Accessions	P17919, Q3ZAY6, Q9CYH3	Gene names	Hoxb1, Hox-2.9, Hoxb-1
Domain Architecture
Description	Homeobox protein Hox-B1 (Hox-2.9).

HXA6_HUMAN
NC score	0.068990 (rank : 203)	θ value	θ > 10 (rank : 187)
Query Neighborhood Hits	92	Target Neighborhood Hits	309	Shared Neighborhood Hits	14
SwissProt Accessions	P31267, Q9UPM0	Gene names	HOXA6, HOX1B
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A6 (Hox-1B).

HXB2_HUMAN
NC score	0.068838 (rank : 204)	θ value	θ > 10 (rank : 197)
Query Neighborhood Hits	92	Target Neighborhood Hits	367	Shared Neighborhood Hits	14
SwissProt Accessions	P14652, P10913, P17485	Gene names	HOXB2, HOX2H
Domain Architecture
Description	Homeobox protein Hox-B2 (Hox-2H) (Hox-2.8) (K8).

LHX5_MOUSE
NC score	0.068605 (rank : 205)	θ value	θ > 10 (rank : 253)
Query Neighborhood Hits	92	Target Neighborhood Hits	456	Shared Neighborhood Hits	15
SwissProt Accessions	P61375, P50459	Gene names	Lhx5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

HXA1_MOUSE
NC score	0.068586 (rank : 206)	θ value	θ > 10 (rank : 178)
Query Neighborhood Hits	92	Target Neighborhood Hits	341	Shared Neighborhood Hits	14
SwissProt Accessions	P09022, P15463	Gene names	Hoxa1, Era-1, Hox-1.6, Hoxa-1
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1.6) (Homeotic protein ERA-1-993) (Early retinoic acid 1) (Homeoboxless protein ERA-1-399).

HXA5_HUMAN
NC score	0.068506 (rank : 207)	θ value	θ > 10 (rank : 185)
Query Neighborhood Hits	92	Target Neighborhood Hits	336	Shared Neighborhood Hits	15
SwissProt Accessions	P20719, O43367, Q96CY6	Gene names	HOXA5, HOX1C
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1C).

LHX5_HUMAN
NC score	0.068336 (rank : 208)	θ value	θ > 10 (rank : 252)
Query Neighborhood Hits	92	Target Neighborhood Hits	453	Shared Neighborhood Hits	15
SwissProt Accessions	Q9H2C1	Gene names	LHX5
Domain Architecture
Description	LIM/homeobox protein Lhx5.

HXA5_MOUSE
NC score	0.068049 (rank : 209)	θ value	θ > 10 (rank : 186)
Query Neighborhood Hits	92	Target Neighborhood Hits	338	Shared Neighborhood Hits	16
SwissProt Accessions	P09021, Q91VQ5	Gene names	Hoxa5, Hox-1.3, Hoxa-5
Domain Architecture
Description	Homeobox protein Hox-A5 (Hox-1.3) (M2).

NKX22_HUMAN
NC score	0.067812 (rank : 210)	θ value	θ > 10 (rank : 274)
Query Neighborhood Hits	92	Target Neighborhood Hits	342	Shared Neighborhood Hits	16
SwissProt Accessions	O95096	Gene names	NKX2-2, NKX2.2, NKX2B
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

HXD3_MOUSE
NC score	0.067374 (rank : 211)	θ value	θ > 10 (rank : 235)
Query Neighborhood Hits	92	Target Neighborhood Hits	435	Shared Neighborhood Hits	18
SwissProt Accessions	P09027, Q3UUD3	Gene names	Hoxd3, Hox-4.1, Hoxd-3
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4.1) (Homeobox protein MH-19).

HXA1_HUMAN
NC score	0.066923 (rank : 212)	θ value	θ > 10 (rank : 177)
Query Neighborhood Hits	92	Target Neighborhood Hits	334	Shared Neighborhood Hits	14
SwissProt Accessions	P49639, O43363	Gene names	HOXA1, HOX1F
Domain Architecture
Description	Homeobox protein Hox-A1 (Hox-1F).

HXD3_HUMAN
NC score	0.066039 (rank : 213)	θ value	θ > 10 (rank : 234)
Query Neighborhood Hits	92	Target Neighborhood Hits	433	Shared Neighborhood Hits	24
SwissProt Accessions	P31249, Q99955, Q9BSC5	Gene names	HOXD3, HOX4A
Domain Architecture
Description	Homeobox protein Hox-D3 (Hox-4A).

HXA7_MOUSE
NC score	0.065591 (rank : 214)	θ value	θ > 10 (rank : 190)
Query Neighborhood Hits	92	Target Neighborhood Hits	318	Shared Neighborhood Hits	15
SwissProt Accessions	P02830, Q544P0	Gene names	Hoxa7, Hox-1.1, Hoxa-7
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1.1) (M6-12) (M6).

NKX28_MOUSE
NC score	0.065440 (rank : 215)	θ value	θ > 10 (rank : 284)
Query Neighborhood Hits	92	Target Neighborhood Hits	347	Shared Neighborhood Hits	15
SwissProt Accessions	O70584	Gene names	Nkx2-8, Nkx-2.9, Nkx2-9, Nkx2h
Domain Architecture
Description	Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H) (Homeobox protein Nkx-2.9).

HXB7_HUMAN
NC score	0.065401 (rank : 216)	θ value	θ > 10 (rank : 207)
Query Neighborhood Hits	92	Target Neighborhood Hits	311	Shared Neighborhood Hits	14
SwissProt Accessions	P09629, Q15957	Gene names	HOXB7, HOX2C
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2C) (HHO.C1).

NKX22_MOUSE
NC score	0.065343 (rank : 217)	θ value	θ > 10 (rank : 275)
Query Neighborhood Hits	92	Target Neighborhood Hits	336	Shared Neighborhood Hits	14
SwissProt Accessions	P42586	Gene names	Nkx2-2, Nkx-2.2, Nkx2b
Domain Architecture
Description	Homeobox protein Nkx-2.2 (Homeobox protein NK-2 homolog B).

HXB5_HUMAN
NC score	0.065187 (rank : 218)	θ value	θ > 10 (rank : 203)
Query Neighborhood Hits	92	Target Neighborhood Hits	332	Shared Neighborhood Hits	14
SwissProt Accessions	P09067, P09069	Gene names	HOXB5, HOX2A
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2A) (HHO.C10) (HU-1).

HXB5_MOUSE
NC score	0.065017 (rank : 219)	θ value	θ > 10 (rank : 204)
Query Neighborhood Hits	92	Target Neighborhood Hits	337	Shared Neighborhood Hits	14
SwissProt Accessions	P09079, Q3ZAY8	Gene names	Hoxb5, Hox-2.1, Hoxb-5
Domain Architecture
Description	Homeobox protein Hox-B5 (Hox-2.1) (MU-1) (H24.1).

HXA7_HUMAN
NC score	0.064527 (rank : 220)	θ value	θ > 10 (rank : 189)
Query Neighborhood Hits	92	Target Neighborhood Hits	309	Shared Neighborhood Hits	15
SwissProt Accessions	P31268, O43368, O43486, O95655, Q9NSC8, Q9UDM1	Gene names	HOXA7, HOX1A
Domain Architecture
Description	Homeobox protein Hox-A7 (Hox-1A) (Hox 1.1).

LHX4_MOUSE
NC score	0.064444 (rank : 221)	θ value	θ > 10 (rank : 251)
Query Neighborhood Hits	92	Target Neighborhood Hits	457	Shared Neighborhood Hits	15
SwissProt Accessions	P53776, O08916, Q9R280	Gene names	Lhx4, Gsh-4, Gsh4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

LHX4_HUMAN
NC score	0.064401 (rank : 222)	θ value	θ > 10 (rank : 250)
Query Neighborhood Hits	92	Target Neighborhood Hits	455	Shared Neighborhood Hits	15
SwissProt Accessions	Q969G2, Q8NHE0, Q8TCJ1, Q8WWX2, Q969W2	Gene names	LHX4
Domain Architecture
Description	LIM/homeobox protein Lhx4.

HXB7_MOUSE
NC score	0.064347 (rank : 223)	θ value	θ > 10 (rank : 208)
Query Neighborhood Hits	92	Target Neighborhood Hits	314	Shared Neighborhood Hits	14
SwissProt Accessions	P09024, Q3UW15	Gene names	Hoxb7, Hox-2.3, Hoxb-7
Domain Architecture
Description	Homeobox protein Hox-B7 (Hox-2.3) (MUB1) (Homeobox protein MH-22B).

HXA2_HUMAN
NC score	0.063713 (rank : 224)	θ value	θ > 10 (rank : 179)
Query Neighborhood Hits	92	Target Neighborhood Hits	370	Shared Neighborhood Hits	16
SwissProt Accessions	O43364	Gene names	HOXA2
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-A2.

HXD1_HUMAN
NC score	0.063613 (rank : 225)	θ value	θ > 10 (rank : 232)
Query Neighborhood Hits	92	Target Neighborhood Hits	337	Shared Neighborhood Hits	16
SwissProt Accessions	Q9GZZ0	Gene names	HOXD1
Domain Architecture
Description	Homeobox protein Hox-D1.

LHX3_MOUSE
NC score	0.063399 (rank : 226)	θ value	θ > 10 (rank : 249)
Query Neighborhood Hits	92	Target Neighborhood Hits	451	Shared Neighborhood Hits	14
SwissProt Accessions	P50481, Q61800, Q61801	Gene names	Lhx3, Lim-3, Lim3, Plim
Domain Architecture
Description	LIM/homeobox protein Lhx3 (Homeobox protein LIM-3) (Homeobox protein P-LIM) (LIM homeobox protein 3).

HXA2_MOUSE
NC score	0.063039 (rank : 227)	θ value	θ > 10 (rank : 180)
Query Neighborhood Hits	92	Target Neighborhood Hits	338	Shared Neighborhood Hits	16
SwissProt Accessions	P31245, Q149U3, Q920T8	Gene names	Hoxa2, Hox-1.11, Hoxa-2
Domain Architecture
Description	Homeobox protein Hox-A2 (Hox-1.11) (Hox1.11).

LHX3_HUMAN
NC score	0.062889 (rank : 228)	θ value	θ > 10 (rank : 248)
Query Neighborhood Hits	92	Target Neighborhood Hits	474	Shared Neighborhood Hits	16
SwissProt Accessions	Q9UBR4, Q9NZB5, Q9P0I8, Q9P0I9	Gene names	LHX3
Domain Architecture
Description	LIM/homeobox protein Lhx3.

HXC6_HUMAN
NC score	0.062658 (rank : 229)	θ value	θ > 10 (rank : 220)
Query Neighborhood Hits	92	Target Neighborhood Hits	306	Shared Neighborhood Hits	13
SwissProt Accessions	P09630	Gene names	HOXC6, HOX3C
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3C) (HHO.C8) (CP25).

HXC6_MOUSE
NC score	0.062658 (rank : 230)	θ value	θ > 10 (rank : 221)
Query Neighborhood Hits	92	Target Neighborhood Hits	306	Shared Neighborhood Hits	13
SwissProt Accessions	P10629, Q61683	Gene names	Hoxc6, Hox-3.3, Hoxc-6
Domain Architecture
Description	Homeobox protein Hox-C6 (Hox-3.3) (Hox-6.1).

PO6F1_MOUSE
NC score	0.062289 (rank : 231)	θ value	θ > 10 (rank : 314)
Query Neighborhood Hits	92	Target Neighborhood Hits	581	Shared Neighborhood Hits	29
SwissProt Accessions	Q07916, Q91XK3	Gene names	Pou6f1, Emb
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (Octamer-binding transcription factor EMB) (Transcription regulatory protein MCP-1).

ZFHX2_HUMAN
NC score	0.061913 (rank : 232)	θ value	θ > 10 (rank : 342)
Query Neighborhood Hits	92	Target Neighborhood Hits	1178	Shared Neighborhood Hits	25
SwissProt Accessions	Q9C0A1	Gene names	ZFHX2, KIAA1762
Domain Architecture
Description	Zinc finger homeobox protein 2.

HXD13_MOUSE
NC score	0.061780 (rank : 233)	θ value	θ > 10 (rank : 231)
Query Neighborhood Hits	92	Target Neighborhood Hits	324	Shared Neighborhood Hits	14
SwissProt Accessions	P70217, Q2VPB0, Q2VPB1, Q64177	Gene names	Hoxd13, Hox-4.8
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4.8).

HXD13_HUMAN
NC score	0.061757 (rank : 234)	θ value	θ > 10 (rank : 230)
Query Neighborhood Hits	92	Target Neighborhood Hits	332	Shared Neighborhood Hits	14
SwissProt Accessions	P35453	Gene names	HOXD13, HOX4I
Domain Architecture
Description	Homeobox protein Hox-D13 (Hox-4I).

HXC13_HUMAN
NC score	0.061686 (rank : 235)	θ value	θ > 10 (rank : 214)
Query Neighborhood Hits	92	Target Neighborhood Hits	336	Shared Neighborhood Hits	13
SwissProt Accessions	P31276, Q96J32, Q9NR24, Q9NYD5	Gene names	HOXC13, HOX3G
Domain Architecture
Description	Homeobox protein Hox-C13 (Hox-3G).

HXC13_MOUSE
NC score	0.061671 (rank : 236)	θ value	θ > 10 (rank : 215)
Query Neighborhood Hits	92	Target Neighborhood Hits	337	Shared Neighborhood Hits	13
SwissProt Accessions	P50207, Q53Z78, Q920I7	Gene names	Hoxc13, Hoxc-13
Domain Architecture
Description	Homeobox protein Hox-C13.

PO6F1_HUMAN
NC score	0.060968 (rank : 237)	θ value	θ > 10 (rank : 313)
Query Neighborhood Hits	92	Target Neighborhood Hits	370	Shared Neighborhood Hits	15
SwissProt Accessions	Q14863	Gene names	POU6F1, BRN5, MPOU, TCFB1
Domain Architecture
Description	POU domain, class 6, transcription factor 1 (mPOU homeobox protein) (Brain-specific homeobox/POU domain protein 5) (Brain-5) (Brn-5 protein).

PBX4_MOUSE
NC score	0.060104 (rank : 238)	θ value	θ > 10 (rank : 300)
Query Neighborhood Hits	92	Target Neighborhood Hits	324	Shared Neighborhood Hits	15
SwissProt Accessions	Q99NE9, Q8CFL2, Q99NE8	Gene names	Pbx4
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 4 (Homeobox protein PBX4).

HXB13_HUMAN
NC score	0.059522 (rank : 239)	θ value	θ > 10 (rank : 193)
Query Neighborhood Hits	92	Target Neighborhood Hits	377	Shared Neighborhood Hits	14
SwissProt Accessions	Q92826, Q96QM4, Q99810	Gene names	HOXB13
Domain Architecture
Description	Homeobox protein Hox-B13.

HXD1_MOUSE
NC score	0.059186 (rank : 240)	θ value	θ > 10 (rank : 233)
Query Neighborhood Hits	92	Target Neighborhood Hits	381	Shared Neighborhood Hits	16
SwissProt Accessions	Q01822	Gene names	Hoxd1, Hox-4.9, Hoxd-1
Domain Architecture
Description	Homeobox protein Hox-D1 (Hox-4.9).

HXA13_MOUSE
NC score	0.059063 (rank : 241)	θ value	θ > 10 (rank : 176)
Query Neighborhood Hits	92	Target Neighborhood Hits	351	Shared Neighborhood Hits	15
SwissProt Accessions	Q62424	Gene names	Hoxa13, Hox-1.10
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1.10).

HXA13_HUMAN
NC score	0.058947 (rank : 242)	θ value	θ > 10 (rank : 175)
Query Neighborhood Hits	92	Target Neighborhood Hits	353	Shared Neighborhood Hits	16
SwissProt Accessions	P31271, O43371	Gene names	HOXA13, HOX1J
Domain Architecture
Description	Homeobox protein Hox-A13 (Hox-1J).

HXD8_MOUSE
NC score	0.058448 (rank : 243)	θ value	θ > 10 (rank : 239)
Query Neighborhood Hits	92	Target Neighborhood Hits	333	Shared Neighborhood Hits	14
SwissProt Accessions	P23463	Gene names	Hoxd8, Hox-4.3, Hoxd-8
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4.3) (Hox-5.4).

HXD12_MOUSE
NC score	0.058325 (rank : 244)	θ value	θ > 10 (rank : 229)
Query Neighborhood Hits	92	Target Neighborhood Hits	370	Shared Neighborhood Hits	16
SwissProt Accessions	P23812	Gene names	Hoxd12, Hox-4.7, Hoxd-12
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4.7) (Hox-5.6).

LMX1B_HUMAN
NC score	0.058312 (rank : 245)	θ value	θ > 10 (rank : 262)
Query Neighborhood Hits	92	Target Neighborhood Hits	404	Shared Neighborhood Hits	15
SwissProt Accessions	O60663, O75463	Gene names	LMX1B
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

HXD8_HUMAN
NC score	0.058139 (rank : 246)	θ value	θ > 10 (rank : 238)
Query Neighborhood Hits	92	Target Neighborhood Hits	338	Shared Neighborhood Hits	15
SwissProt Accessions	P13378	Gene names	HOXD8, HOX4E
Domain Architecture
Description	Homeobox protein Hox-D8 (Hox-4E) (Hox-5.4).

HNF1B_HUMAN
NC score	0.057865 (rank : 247)	θ value	θ > 10 (rank : 169)
Query Neighborhood Hits	92	Target Neighborhood Hits	80	Shared Neighborhood Hits	8
SwissProt Accessions	P35680	Gene names	TCF2, HNF1B
Domain Architecture
Description	Hepatocyte nuclear factor 1-beta (HNF-1beta) (HNF-1B) (Variant hepatic nuclear factor 1) (VHNF1) (Homeoprotein LFB3) (Transcription factor 2) (TCF-2).

HXD12_HUMAN
NC score	0.057831 (rank : 248)	θ value	θ > 10 (rank : 228)
Query Neighborhood Hits	92	Target Neighborhood Hits	334	Shared Neighborhood Hits	13
SwissProt Accessions	P35452, Q9NS03	Gene names	HOXD12, HOX4H
Domain Architecture
Description	Homeobox protein Hox-D12 (Hox-4H).

LMX1B_MOUSE
NC score	0.057707 (rank : 249)	θ value	θ > 10 (rank : 263)
Query Neighborhood Hits	92	Target Neighborhood Hits	394	Shared Neighborhood Hits	14
SwissProt Accessions	O88609	Gene names	Lmx1b
Domain Architecture
Description	LIM homeobox transcription factor 1 beta (LIM/homeobox protein LMX1B) (LIM-homeobox protein 1.2) (LMX-1.2).

HXB8_HUMAN
NC score	0.057382 (rank : 250)	θ value	θ > 10 (rank : 209)
Query Neighborhood Hits	92	Target Neighborhood Hits	324	Shared Neighborhood Hits	14
SwissProt Accessions	P17481, Q9H1I2	Gene names	HOXB8, HOX2D
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2D) (Hox-2.4).

HXB8_MOUSE
NC score	0.057380 (rank : 251)	θ value	θ > 10 (rank : 210)
Query Neighborhood Hits	92	Target Neighborhood Hits	325	Shared Neighborhood Hits	14
SwissProt Accessions	P09632	Gene names	Hoxb8, Hox-2.4, Hoxb-8
Domain Architecture
Description	Homeobox protein Hox-B8 (Hox-2.4).

PBX2_HUMAN
NC score	0.056896 (rank : 252)	θ value	θ > 10 (rank : 296)
Query Neighborhood Hits	92	Target Neighborhood Hits	350	Shared Neighborhood Hits	14
SwissProt Accessions	P40425	Gene names	PBX2, G17
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2) (Protein G17).

PBX2_MOUSE
NC score	0.056755 (rank : 253)	θ value	θ > 10 (rank : 297)
Query Neighborhood Hits	92	Target Neighborhood Hits	341	Shared Neighborhood Hits	14
SwissProt Accessions	O35984	Gene names	Pbx2
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 2 (Homeobox protein PBX2).

HXB13_MOUSE
NC score	0.056083 (rank : 254)	θ value	θ > 10 (rank : 194)
Query Neighborhood Hits	92	Target Neighborhood Hits	384	Shared Neighborhood Hits	15
SwissProt Accessions	P70321, Q80Y12	Gene names	Hoxb13
Domain Architecture
Description	Homeobox protein Hox-B13.

HXC12_HUMAN
NC score	0.055642 (rank : 255)	θ value	θ > 10 (rank : 212)
Query Neighborhood Hits	92	Target Neighborhood Hits	313	Shared Neighborhood Hits	13
SwissProt Accessions	P31275, Q9BXJ6	Gene names	HOXC12, HOX3F
Domain Architecture
Description	Homeobox protein Hox-C12 (Hox-3F).

HXC8_MOUSE
NC score	0.055083 (rank : 256)	θ value	θ > 10 (rank : 223)
Query Neighborhood Hits	92	Target Neighborhood Hits	327	Shared Neighborhood Hits	13
SwissProt Accessions	P09025	Gene names	Hoxc8, Hox-3.1, Hoxc-8
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3.1) (M31).

HXC8_HUMAN
NC score	0.055074 (rank : 257)	θ value	θ > 10 (rank : 222)
Query Neighborhood Hits	92	Target Neighborhood Hits	327	Shared Neighborhood Hits	13
SwissProt Accessions	P31273, O15221, O15362	Gene names	HOXC8, HOX3A
Domain Architecture
Description	Homeobox protein Hox-C8 (Hox-3A).

HXC12_MOUSE
NC score	0.054968 (rank : 258)	θ value	θ > 10 (rank : 213)
Query Neighborhood Hits	92	Target Neighborhood Hits	316	Shared Neighborhood Hits	13
SwissProt Accessions	Q8K5B8	Gene names	Hoxc12, Hox-3.8, Hoxc-12
Domain Architecture	No domain graphic available
Description	Homeobox protein Hox-C12 (Hox-3.8).

PBX3_MOUSE
NC score	0.054652 (rank : 259)	θ value	θ > 10 (rank : 299)
Query Neighborhood Hits	92	Target Neighborhood Hits	306	Shared Neighborhood Hits	14
SwissProt Accessions	O35317, Q925W2	Gene names	Pbx3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

PBX3_HUMAN
NC score	0.054645 (rank : 260)	θ value	θ > 10 (rank : 298)
Query Neighborhood Hits	92	Target Neighborhood Hits	306	Shared Neighborhood Hits	14
SwissProt Accessions	P40426, Q96PF9, Q96PG0	Gene names	PBX3
Domain Architecture
Description	Pre-B-cell leukemia transcription factor 3 (Homeobox protein PBX3).

ZHX1_MOUSE
NC score	0.054481 (rank : 261)	θ value	θ > 10 (rank : 344)
Query Neighborhood Hits	92	Target Neighborhood Hits	334	Shared Neighborhood Hits	19
SwissProt Accessions	P70121, Q8BQ68, Q8C6T4, Q8CJG3	Gene names	Zhx1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

BORG5_MOUSE
NC score	0.054247 (rank : 262)	θ value	0.0431538 (rank : 21)
Query Neighborhood Hits	92	Target Neighborhood Hits	61	Shared Neighborhood Hits	5
SwissProt Accessions	Q91W92, Q9D8M1	Gene names	Cdc42ep1, Borg5, Cep1
Domain Architecture	No domain graphic available
Description	Cdc42 effector protein 1 (Binder of Rho GTPases 5).

LMX1A_HUMAN
NC score	0.053513 (rank : 263)	θ value	θ > 10 (rank : 260)
Query Neighborhood Hits	92	Target Neighborhood Hits	406	Shared Neighborhood Hits	13
SwissProt Accessions	Q8TE12, Q8TE11	Gene names	LMX1A
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

HMBX1_HUMAN
NC score	0.053415 (rank : 264)	θ value	θ > 10 (rank : 162)
Query Neighborhood Hits	92	Target Neighborhood Hits	118	Shared Neighborhood Hits	6
SwissProt Accessions	Q6NT76, Q3Y6P1, Q96GS5, Q9H701	Gene names	HMBOX1
Domain Architecture	No domain graphic available
Description	Homeobox-containing protein 1.

LMX1A_MOUSE
NC score	0.053262 (rank : 265)	θ value	θ > 10 (rank : 261)
Query Neighborhood Hits	92	Target Neighborhood Hits	405	Shared Neighborhood Hits	14
SwissProt Accessions	Q9JKU8	Gene names	Lmx1a
Domain Architecture
Description	LIM homeobox transcription factor 1 alpha (LIM/homeobox protein LMX1A) (LIM-homeobox protein 1.1) (LMX-1.1).

HXA9_MOUSE
NC score	0.053226 (rank : 266)	θ value	θ > 10 (rank : 192)
Query Neighborhood Hits	92	Target Neighborhood Hits	334	Shared Neighborhood Hits	14
SwissProt Accessions	P09631, O70154, O70155	Gene names	Hoxa9, Hox-1.7, Hoxa-9
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1.7).

HXA9_HUMAN
NC score	0.053127 (rank : 267)	θ value	θ > 10 (rank : 191)
Query Neighborhood Hits	92	Target Neighborhood Hits	332	Shared Neighborhood Hits	14
SwissProt Accessions	P31269, O43369, O43429, Q99820	Gene names	HOXA9, HOX1G
Domain Architecture
Description	Homeobox protein Hox-A9 (Hox-1G).

HXD11_HUMAN
NC score	0.053054 (rank : 268)	θ value	θ > 10 (rank : 226)
Query Neighborhood Hits	92	Target Neighborhood Hits	353	Shared Neighborhood Hits	15
SwissProt Accessions	P31277, Q9NS02	Gene names	HOXD11, HOX4F
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4F).

HXA11_HUMAN
NC score	0.052211 (rank : 269)	θ value	θ > 10 (rank : 173)
Query Neighborhood Hits	92	Target Neighborhood Hits	334	Shared Neighborhood Hits	13
SwissProt Accessions	P31270	Gene names	HOXA11, HOX1I
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1I).

HXA11_MOUSE
NC score	0.051957 (rank : 270)	θ value	θ > 10 (rank : 174)
Query Neighborhood Hits	92	Target Neighborhood Hits	327	Shared Neighborhood Hits	13
SwissProt Accessions	P31311, Q3V026	Gene names	Hoxa11, Hox-1.9, Hoxa-11
Domain Architecture
Description	Homeobox protein Hox-A11 (Hox-1.9).

HXB9_HUMAN
NC score	0.051379 (rank : 271)	θ value	θ > 10 (rank : 211)
Query Neighborhood Hits	92	Target Neighborhood Hits	344	Shared Neighborhood Hits	14
SwissProt Accessions	P17482, Q9H1I1	Gene names	HOXB9, HOX2E
Domain Architecture
Description	Homeobox protein Hox-B9 (Hox-2E) (Hox-2.5).

HXD11_MOUSE
NC score	0.051348 (rank : 272)	θ value	θ > 10 (rank : 227)
Query Neighborhood Hits	92	Target Neighborhood Hits	376	Shared Neighborhood Hits	17
SwissProt Accessions	P23813	Gene names	Hoxd11, Hox-4.6, Hoxd-11
Domain Architecture
Description	Homeobox protein Hox-D11 (Hox-4.6) (Hox-5.5).

HXC9_HUMAN
NC score	0.051326 (rank : 273)	θ value	θ > 10 (rank : 224)
Query Neighborhood Hits	92	Target Neighborhood Hits	339	Shared Neighborhood Hits	16
SwissProt Accessions	P31274, Q9H1I0	Gene names	HOXC9, HOX3B
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3B).

HXC9_MOUSE
NC score	0.051315 (rank : 274)	θ value	θ > 10 (rank : 225)
Query Neighborhood Hits	92	Target Neighborhood Hits	338	Shared Neighborhood Hits	16
SwissProt Accessions	P09633	Gene names	Hoxc9, Hox-3.2, Hoxc-9
Domain Architecture
Description	Homeobox protein Hox-C9 (Hox-3.2).

ZHX1_HUMAN
NC score	0.050970 (rank : 275)	θ value	θ > 10 (rank : 343)
Query Neighborhood Hits	92	Target Neighborhood Hits	307	Shared Neighborhood Hits	16
SwissProt Accessions	Q9UKY1, Q8IWD8	Gene names	ZHX1
Domain Architecture
Description	Zinc fingers and homeoboxes protein 1.

HNF1B_MOUSE
NC score	0.050775 (rank : 276)	θ value	θ > 10 (rank : 170)
Query Neighborhood Hits	92	Target Neighborhood Hits	78	Shared Neighborhood Hits	8
SwissProt Accessions	P27889, Q8R162, Q9CS26, Q9R1W1, Q9R1W2, Q9WTL5, Q9WTL6	Gene names	Tcf2, Hnf-1b, Hnf1b
Domain Architecture
Description	Hepatocyte nuclear factor 1-beta (HNF-1beta) (HNF-1B) (Variant hepatic nuclear factor 1) (VHNF1) (Homeoprotein LFB3).

SMRC1_HUMAN
NC score	0.045948 (rank : 277)	θ value	0.47712 (rank : 29)
Query Neighborhood Hits	92	Target Neighborhood Hits	375	Shared Neighborhood Hits	14
SwissProt Accessions	Q92922, Q6P172, Q8IWH2	Gene names	SMARCC1, BAF155
Domain Architecture	No domain graphic available
Description	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member 1 (SWI/SNF complex 155 kDa subunit) (BRG1-associated factor 155).

TAF6_HUMAN
NC score	0.044988 (rank : 278)	θ value	3.0926 (rank : 61)
Query Neighborhood Hits	92	Target Neighborhood Hits	127	Shared Neighborhood Hits	12
SwissProt Accessions	P49848	Gene names	TAF6, TAF2E, TAFII70
Domain Architecture
Description	Transcription initiation factor TFIID subunit 6 (Transcription initiation factor TFIID 70 kDa subunit) (TAF(II)70) (TAFII-70) (TAFII- 80) (TAFII80).

EP300_HUMAN
NC score	0.043928 (rank : 279)	θ value	0.0961366 (rank : 22)
Query Neighborhood Hits	92	Target Neighborhood Hits	821	Shared Neighborhood Hits	25
SwissProt Accessions	Q09472	Gene names	EP300, P300
Domain Architecture
Description	E1A-associated protein p300 (EC 2.3.1.48).

DRAP1_HUMAN
NC score	0.043088 (rank : 280)	θ value	1.38821 (rank : 39)
Query Neighborhood Hits	92	Target Neighborhood Hits	51	Shared Neighborhood Hits	4
SwissProt Accessions	Q14919, Q13448	Gene names	DRAP1
Domain Architecture	No domain graphic available
Description	Dr1-associated corepressor (Dr1-associated protein 1) (Negative co- factor 2 alpha) (NC2 alpha).

SMRC2_HUMAN
NC score	0.041602 (rank : 281)	θ value	0.62314 (rank : 32)
Query Neighborhood Hits	92	Target Neighborhood Hits	499	Shared Neighborhood Hits	14
SwissProt Accessions	Q8TAQ2, Q92923, Q96E12, Q96GY4	Gene names	SMARCC2, BAF170
Domain Architecture	No domain graphic available
Description	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member 2 (SWI/SNF complex 170 kDa subunit) (BRG1-associated factor 170).

SMRC1_MOUSE
NC score	0.040664 (rank : 282)	θ value	0.813845 (rank : 35)
Query Neighborhood Hits	92	Target Neighborhood Hits	459	Shared Neighborhood Hits	11
SwissProt Accessions	P97496, Q7TS80, Q7TT29	Gene names	Smarcc1, Baf155, Srg3
Domain Architecture	No domain graphic available
Description	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member 1 (SWI/SNF complex 155 kDa subunit) (BRG1-associated factor 155) (SWI3-related protein).

ZC3H5_MOUSE
NC score	0.037772 (rank : 283)	θ value	0.365318 (rank : 28)
Query Neighborhood Hits	92	Target Neighborhood Hits	136	Shared Neighborhood Hits	5
SwissProt Accessions	Q8BL48, Q8BVI6, Q99JZ8, Q99LL9	Gene names	Zc3h5, Kiaa1753, Zc3hdc5
Domain Architecture	No domain graphic available
Description	Zinc finger CCCH domain-containing protein 5.

CN032_HUMAN
NC score	0.036918 (rank : 284)	θ value	4.03905 (rank : 63)
Query Neighborhood Hits	92	Target Neighborhood Hits	267	Shared Neighborhood Hits	18
SwissProt Accessions	Q8NDC0, Q96BG5	Gene names	C14orf32
Domain Architecture	No domain graphic available
Description	Protein C14orf32.

ZC3H5_HUMAN
NC score	0.035679 (rank : 285)	θ value	0.813845 (rank : 37)
Query Neighborhood Hits	92	Target Neighborhood Hits	134	Shared Neighborhood Hits	5
SwissProt Accessions	Q9C0B0	Gene names	ZC3H5, KIAA1753, ZC3HDC5
Domain Architecture	No domain graphic available
Description	Zinc finger CCCH domain-containing protein 5.

CBP_MOUSE
NC score	0.033977 (rank : 286)	θ value	2.36792 (rank : 49)
Query Neighborhood Hits	92	Target Neighborhood Hits	1051	Shared Neighborhood Hits	41
SwissProt Accessions	P45481	Gene names	Crebbp, Cbp
Domain Architecture
Description	CREB-binding protein (EC 2.3.1.48).

MUC2_HUMAN
NC score	0.031255 (rank : 287)	θ value	4.03905 (rank : 65)
Query Neighborhood Hits	92	Target Neighborhood Hits	906	Shared Neighborhood Hits	24
SwissProt Accessions	Q02817, Q14878	Gene names	MUC2, SMUC
Domain Architecture
Description	Mucin-2 precursor (Intestinal mucin-2).

SMRC2_MOUSE
NC score	0.030954 (rank : 288)	θ value	8.99809 (rank : 91)
Query Neighborhood Hits	92	Target Neighborhood Hits	487	Shared Neighborhood Hits	14
SwissProt Accessions	Q6PDG5, Q6P6P3	Gene names	Smarcc2, Baf170
Domain Architecture	No domain graphic available
Description	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member 2 (SWI/SNF complex 170 kDa subunit) (BRG1-associated factor 170).

AUXI_HUMAN
NC score	0.027646 (rank : 289)	θ value	0.365318 (rank : 26)
Query Neighborhood Hits	92	Target Neighborhood Hits	99	Shared Neighborhood Hits	6
SwissProt Accessions	O75061, Q32M66, Q4G0K1, Q5T614, Q5T615	Gene names	DNAJC6, KIAA0473
Domain Architecture	No domain graphic available
Description	Putative tyrosine-protein phosphatase auxilin (EC 3.1.3.48) (DnaJ homolog subfamily C member 6).

PRR12_HUMAN
NC score	0.026409 (rank : 290)	θ value	4.03905 (rank : 67)
Query Neighborhood Hits	92	Target Neighborhood Hits	460	Shared Neighborhood Hits	19
SwissProt Accessions	Q9ULL5, Q8N4J6	Gene names	PRR12, KIAA1205
Domain Architecture	No domain graphic available
Description	Proline-rich protein 12.

CBP_HUMAN
NC score	0.026176 (rank : 291)	θ value	4.03905 (rank : 62)
Query Neighborhood Hits	92	Target Neighborhood Hits	941	Shared Neighborhood Hits	34
SwissProt Accessions	Q92793, O00147, Q16376	Gene names	CREBBP, CBP
Domain Architecture
Description	CREB-binding protein (EC 2.3.1.48).

EP400_HUMAN
NC score	0.024924 (rank : 292)	θ value	0.0961366 (rank : 23)
Query Neighborhood Hits	92	Target Neighborhood Hits	556	Shared Neighborhood Hits	18
SwissProt Accessions	Q96L91, O15411, Q6P2F5, Q8N8Q7, Q8NE05, Q96JK7, Q9P230	Gene names	EP400, CAGH32, KIAA1498, KIAA1818, TNRC12
Domain Architecture	No domain graphic available
Description	E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa SWI2/SNF2-related protein) (Domino homolog) (hDomino) (CAG repeat protein 32) (Trinucleotide repeat-containing gene 12 protein).

PO121_HUMAN
NC score	0.024874 (rank : 293)	θ value	1.81305 (rank : 45)
Query Neighborhood Hits	92	Target Neighborhood Hits	344	Shared Neighborhood Hits	17
SwissProt Accessions	Q9Y2N3, O75115, Q9Y4S7	Gene names	POM121, KIAA0618, NUP121
Domain Architecture	No domain graphic available
Description	Nuclear envelope pore membrane protein POM 121 (Pore membrane protein of 121 kDa) (P145).

HCFC1_HUMAN
NC score	0.024482 (rank : 294)	θ value	8.99809 (rank : 87)
Query Neighborhood Hits	92	Target Neighborhood Hits	331	Shared Neighborhood Hits	16
SwissProt Accessions	P51610, Q6P4G5	Gene names	HCFC1, HCF1
Domain Architecture	No domain graphic available
Description	Host cell factor (HCF) (HCF-1) (C1 factor) (VP16 accessory protein) (VCAF) (CFF) [Contains: HCF N-terminal chain 1; HCF N-terminal chain 2; HCF N-terminal chain 3; HCF N-terminal chain 4; HCF N-terminal chain 5; HCF N-terminal chain 6; HCF C-terminal chain 1; HCF C- terminal chain 2; HCF C-terminal chain 3; HCF C-terminal chain 4; HCF C-terminal chain 5; HCF C-terminal chain 6].

BCL9_HUMAN
NC score	0.023425 (rank : 295)	θ value	3.0926 (rank : 55)
Query Neighborhood Hits	92	Target Neighborhood Hits	1008	Shared Neighborhood Hits	41
SwissProt Accessions	O00512	Gene names	BCL9
Domain Architecture	No domain graphic available
Description	B-cell lymphoma 9 protein (Bcl-9) (Legless homolog).

HCFC1_MOUSE
NC score	0.021493 (rank : 296)	θ value	0.62314 (rank : 31)
Query Neighborhood Hits	92	Target Neighborhood Hits	348	Shared Neighborhood Hits	17
SwissProt Accessions	Q61191, Q684R1, Q7TSB0, Q8C2D0, Q9QWH2	Gene names	Hcfc1
Domain Architecture	No domain graphic available
Description	Host cell factor (HCF) (HCF-1) (C1 factor) [Contains: HCF N-terminal chain 1; HCF N-terminal chain 2; HCF N-terminal chain 3; HCF N- terminal chain 4; HCF N-terminal chain 5; HCF N-terminal chain 6; HCF C-terminal chain 1; HCF C-terminal chain 2; HCF C-terminal chain 3; HCF C-terminal chain 4; HCF C-terminal chain 5; HCF C-terminal chain 6].

IRX3_HUMAN
NC score	0.020531 (rank : 297)	θ value	8.99809 (rank : 88)
Query Neighborhood Hits	92	Target Neighborhood Hits	342	Shared Neighborhood Hits	15
SwissProt Accessions	P78415, Q7Z4A4, Q7Z4A5, Q8IVC6	Gene names	IRX3, IRXB1
Domain Architecture
Description	Iroquois-class homeodomain protein IRX-3 (Iroquois homeobox protein 3) (Homeodomain protein IRXB1).

EVL_HUMAN
NC score	0.020507 (rank : 298)	θ value	2.36792 (rank : 51)
Query Neighborhood Hits	92	Target Neighborhood Hits	260	Shared Neighborhood Hits	10
SwissProt Accessions	Q9UI08, O95884, Q7Z522, Q8TBV1, Q9UF25, Q9UIC2	Gene names	EVL, RNB6
Domain Architecture
Description	Ena/VASP-like protein (Ena/vasodilator-stimulated phosphoprotein- like).

BAT2_HUMAN
NC score	0.020274 (rank : 299)	θ value	3.0926 (rank : 54)
Query Neighborhood Hits	92	Target Neighborhood Hits	931	Shared Neighborhood Hits	28
SwissProt Accessions	P48634, O95875, Q5SQ29, Q5SQ30, Q5ST84, Q5STX6, Q5STX7, Q68DW9, Q6P9P7, Q6PIN1, Q96QC6	Gene names	BAT2, G2
Domain Architecture
Description	Large proline-rich protein BAT2 (HLA-B-associated transcript 2).

PITM1_MOUSE
NC score	0.019141 (rank : 300)	θ value	2.36792 (rank : 52)
Query Neighborhood Hits	92	Target Neighborhood Hits	69	Shared Neighborhood Hits	7
SwissProt Accessions	O35954	Gene names	Pitpnm1, Dres9, Mpt1, Nir2, Pitpnm
Domain Architecture	No domain graphic available
Description	Membrane-associated phosphatidylinositol transfer protein 1 (Phosphatidylinositol transfer protein, membrane-associated 1) (PITPnm 1) (Mpt-1) (Pyk2 N-terminal domain-interacting receptor 2) (NIR-2) (Drosophila retinal degeneration B homolog 1) (RdgB1).

CIC_MOUSE
NC score	0.018973 (rank : 301)	θ value	0.279714 (rank : 25)
Query Neighborhood Hits	92	Target Neighborhood Hits	742	Shared Neighborhood Hits	25
SwissProt Accessions	Q924A2, Q6PDJ8, Q8CGE4, Q8CHH0, Q9CW61	Gene names	Cic, Kiaa0306
Domain Architecture	No domain graphic available
Description	Protein capicua homolog.

BSN_MOUSE
NC score	0.018612 (rank : 302)	θ value	8.99809 (rank : 82)
Query Neighborhood Hits	92	Target Neighborhood Hits	2057	Shared Neighborhood Hits	52
SwissProt Accessions	O88737, Q6ZQB5	Gene names	Bsn, Kiaa0434
Domain Architecture	No domain graphic available
Description	Protein bassoon.

PITM1_HUMAN
NC score	0.018450 (rank : 303)	θ value	3.0926 (rank : 58)
Query Neighborhood Hits	92	Target Neighborhood Hits	129	Shared Neighborhood Hits	7
SwissProt Accessions	O00562, Q6T7X3, Q8TBN3, Q9BZ73	Gene names	PITPNM1, DRES9, NIR2, PITPNM
Domain Architecture	No domain graphic available
Description	Membrane-associated phosphatidylinositol transfer protein 1 (Phosphatidylinositol transfer protein, membrane-associated 1) (Pyk2 N-terminal domain-interacting receptor 2) (NIR-2) (Drosophila retinal degeneration B homolog).

CO039_MOUSE
NC score	0.018273 (rank : 304)	θ value	3.0926 (rank : 56)
Query Neighborhood Hits	92	Target Neighborhood Hits	445	Shared Neighborhood Hits	26
SwissProt Accessions	Q3TEI4, Q3TMF2, Q3U253, Q3UM75, Q9DA93	Gene names
Domain Architecture	No domain graphic available
Description	Uncharacterized protein C15orf39 homolog.

FOXN4_MOUSE
NC score	0.017977 (rank : 305)	θ value	1.81305 (rank : 43)
Query Neighborhood Hits	92	Target Neighborhood Hits	154	Shared Neighborhood Hits	8
SwissProt Accessions	Q8K3Q3, Q920C0	Gene names	Foxn4
Domain Architecture
Description	Forkhead box protein N4.

SRBP1_HUMAN
NC score	0.016849 (rank : 306)	θ value	4.03905 (rank : 69)
Query Neighborhood Hits	92	Target Neighborhood Hits	225	Shared Neighborhood Hits	12
SwissProt Accessions	P36956, Q16062	Gene names	SREBF1, SREBP1
Domain Architecture
Description	Sterol regulatory element-binding protein 1 (SREBP-1) (Sterol regulatory element-binding transcription factor 1).

YAP1_HUMAN
NC score	0.016799 (rank : 307)	θ value	8.99809 (rank : 92)
Query Neighborhood Hits	92	Target Neighborhood Hits	173	Shared Neighborhood Hits	9
SwissProt Accessions	P46937	Gene names	YAP1, YAP65
Domain Architecture
Description	65 kDa Yes-associated protein (YAP65).

BCOR_MOUSE
NC score	0.016462 (rank : 308)	θ value	2.36792 (rank : 47)
Query Neighborhood Hits	92	Target Neighborhood Hits	521	Shared Neighborhood Hits	12
SwissProt Accessions	Q8CGN4, Q6PDK5, Q6ZPM3, Q8BKF5, Q8CGN1, Q8CGN2, Q8CGN3	Gene names	Bcor, Kiaa1575
Domain Architecture	No domain graphic available
Description	BCoR protein (BCL-6 corepressor).

CAC1A_MOUSE
NC score	0.016412 (rank : 309)	θ value	0.813845 (rank : 34)
Query Neighborhood Hits	92	Target Neighborhood Hits	267	Shared Neighborhood Hits	12
SwissProt Accessions	P97445	Gene names	Cacna1a, Cach4, Cacn3, Cacnl1a4, Ccha1a
Domain Architecture
Description	Voltage-dependent P/Q-type calcium channel subunit alpha-1A (Voltage- gated calcium channel subunit alpha Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI).

3BP1_HUMAN
NC score	0.016362 (rank : 310)	θ value	2.36792 (rank : 46)
Query Neighborhood Hits	92	Target Neighborhood Hits	376	Shared Neighborhood Hits	16
SwissProt Accessions	Q9Y3L3, Q6IBZ2, Q6ZVL9, Q96HQ5, Q9NSQ9	Gene names	SH3BP1
Domain Architecture
Description	SH3 domain-binding protein 1 (3BP-1).

CAC1H_HUMAN
NC score	0.016360 (rank : 311)	θ value	0.365318 (rank : 27)
Query Neighborhood Hits	92	Target Neighborhood Hits	307	Shared Neighborhood Hits	13
SwissProt Accessions	O95180, O95802, Q8WWI6, Q96QI6, Q96RZ9, Q9NYY4, Q9NYY5	Gene names	CACNA1H
Domain Architecture
Description	Voltage-dependent T-type calcium channel subunit alpha-1H (Voltage- gated calcium channel subunit alpha Cav3.2) (Low-voltage-activated calcium channel alpha1 3.2 subunit).

SOCS3_HUMAN
NC score	0.016063 (rank : 312)	θ value	4.03905 (rank : 68)
Query Neighborhood Hits	92	Target Neighborhood Hits	77	Shared Neighborhood Hits	3
SwissProt Accessions	O14543, O14509	Gene names	SOCS3, CIS3, SSI3
Domain Architecture
Description	Suppressor of cytokine signaling 3 (SOCS-3) (Cytokine-inducible SH2 protein 3) (CIS-3) (STAT-induced STAT inhibitor 3) (SSI-3).

IRS2_HUMAN
NC score	0.015730 (rank : 313)	θ value	6.88961 (rank : 80)
Query Neighborhood Hits	92	Target Neighborhood Hits	262	Shared Neighborhood Hits	13
SwissProt Accessions	Q9Y4H2, Q96RR2, Q9BZG0, Q9Y6I5	Gene names	IRS2
Domain Architecture
Description	Insulin receptor substrate 2 (IRS-2).

TLE4_MOUSE
NC score	0.015471 (rank : 314)	θ value	0.62314 (rank : 33)
Query Neighborhood Hits	92	Target Neighborhood Hits	482	Shared Neighborhood Hits	13
SwissProt Accessions	Q62441, Q9JKQ9	Gene names	Tle4, Grg4
Domain Architecture
Description	Transducin-like enhancer protein 4 (Groucho-related protein 4) (Grg- 4).

SGIP1_MOUSE
NC score	0.015314 (rank : 315)	θ value	8.99809 (rank : 90)
Query Neighborhood Hits	92	Target Neighborhood Hits	180	Shared Neighborhood Hits	11
SwissProt Accessions	Q8VD37, Q3UFU3, Q3UGA0, Q8BXX4, Q8C034, Q9CXT2	Gene names	Sgip1
Domain Architecture	No domain graphic available
Description	SH3-containing GRB2-like protein 3-interacting protein 1 (Endophilin- 3-interacting protein).

TLE4_HUMAN
NC score	0.014901 (rank : 316)	θ value	0.813845 (rank : 36)
Query Neighborhood Hits	92	Target Neighborhood Hits	477	Shared Neighborhood Hits	13
SwissProt Accessions	Q04727, Q5T1Y2, Q9BZ07, Q9BZ08, Q9BZ09, Q9NSL3, Q9ULF9	Gene names	TLE4, KIAA1261
Domain Architecture
Description	Transducin-like enhancer protein 4.

CAC1B_MOUSE
NC score	0.014050 (rank : 317)	θ value	1.81305 (rank : 41)
Query Neighborhood Hits	92	Target Neighborhood Hits	351	Shared Neighborhood Hits	13
SwissProt Accessions	O55017, Q60609	Gene names	Cacna1b, Cach5, Cacnl1a5, Cchn1a
Domain Architecture
Description	Voltage-dependent N-type calcium channel subunit alpha-1B (Voltage- gated calcium channel subunit alpha Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII).

CITE4_MOUSE
NC score	0.014048 (rank : 318)	θ value	5.27518 (rank : 71)
Query Neighborhood Hits	92	Target Neighborhood Hits	73	Shared Neighborhood Hits	6
SwissProt Accessions	Q9WUL8, Q66JX0, Q8R176, Q9CZV4	Gene names	Cited4, Mrg2
Domain Architecture	No domain graphic available
Description	Cbp/p300-interacting transactivator 4 (MSG1-related protein 2) (MRG- 2).

BCAR1_HUMAN
NC score	0.012907 (rank : 319)	θ value	6.88961 (rank : 76)
Query Neighborhood Hits	92	Target Neighborhood Hits	554	Shared Neighborhood Hits	22
SwissProt Accessions	P56945	Gene names	BCAR1, CAS, CRKAS
Domain Architecture
Description	Breast cancer anti-estrogen resistance protein 1 (CRK-associated substrate) (p130cas).

AFF1_HUMAN
NC score	0.012693 (rank : 320)	θ value	5.27518 (rank : 70)
Query Neighborhood Hits	92	Target Neighborhood Hits	506	Shared Neighborhood Hits	11
SwissProt Accessions	P51825	Gene names	AFF1, AF4, FEL, MLLT2
Domain Architecture
Description	AF4/FMR2 family member 1 (Protein AF-4) (Proto-oncogene AF4) (Protein FEL).

DEAF1_HUMAN
NC score	0.012647 (rank : 321)	θ value	6.88961 (rank : 78)
Query Neighborhood Hits	92	Target Neighborhood Hits	67	Shared Neighborhood Hits	3
SwissProt Accessions	O75398, O15152, O75399, O75510, O75511, O75512, O75513, Q9UET1	Gene names	DEAF1, SPN, ZMYND5
Domain Architecture
Description	Deformed epidermal autoregulatory factor 1 homolog (Nuclear DEAF-1- related transcriptional regulator) (NUDR) (Suppressin) (Zinc finger MYND domain-containing protein 5).

WASF3_MOUSE
NC score	0.012552 (rank : 322)	θ value	5.27518 (rank : 74)
Query Neighborhood Hits	92	Target Neighborhood Hits	188	Shared Neighborhood Hits	9
SwissProt Accessions	Q8VHI6	Gene names	Wasf3, Wave3
Domain Architecture	No domain graphic available
Description	Wiskott-Aldrich syndrome protein family member 3 (WASP-family protein member 3) (Protein WAVE-3).

MILK1_MOUSE
NC score	0.012376 (rank : 323)	θ value	1.81305 (rank : 44)
Query Neighborhood Hits	92	Target Neighborhood Hits	788	Shared Neighborhood Hits	29
SwissProt Accessions	Q8BGT6, Q8BJ60	Gene names	Mirab13, D15Mit260, Kiaa1668
Domain Architecture
Description	Molecule interacting with Rab13 (MIRab13) (MICAL-like protein 1).

DIAP1_HUMAN
NC score	0.012025 (rank : 324)	θ value	2.36792 (rank : 50)
Query Neighborhood Hits	92	Target Neighborhood Hits	784	Shared Neighborhood Hits	18
SwissProt Accessions	O60610, Q9UC76	Gene names	DIAPH1, DIAP1
Domain Architecture
Description	Protein diaphanous homolog 1 (Diaphanous-related formin-1) (DRF1).

REPS2_MOUSE
NC score	0.011688 (rank : 325)	θ value	3.0926 (rank : 60)
Query Neighborhood Hits	92	Target Neighborhood Hits	102	Shared Neighborhood Hits	5
SwissProt Accessions	Q80XA6	Gene names	Reps2, Pob1
Domain Architecture
Description	RalBP1-associated Eps domain-containing protein 2 (RalBP1-interacting protein 2) (Partner of RalBP1).

MLL2_HUMAN
NC score	0.011664 (rank : 326)	θ value	4.03905 (rank : 64)
Query Neighborhood Hits	92	Target Neighborhood Hits	1788	Shared Neighborhood Hits	37
SwissProt Accessions	O14686, O14687	Gene names	MLL2, ALR
Domain Architecture
Description	Myeloid/lymphoid or mixed-lineage leukemia protein 2 (ALL1-related protein).

FOXD4_HUMAN
NC score	0.011444 (rank : 327)	θ value	0.62314 (rank : 30)
Query Neighborhood Hits	92	Target Neighborhood Hits	106	Shared Neighborhood Hits	5
SwissProt Accessions	Q12950, Q5VVK1, Q8WXT6	Gene names	FOXD4, FKHL9, FOXD4A, FREAC5
Domain Architecture
Description	Forkhead box protein D4 (Forkhead-related protein FKHL9) (Forkhead- related transcription factor 5) (FREAC-5) (Myeloid factor-alpha).

DSRAD_HUMAN
NC score	0.011381 (rank : 328)	θ value	6.88961 (rank : 79)
Query Neighborhood Hits	92	Target Neighborhood Hits	58	Shared Neighborhood Hits	3
SwissProt Accessions	P55265, O15223, O43859, O43860, Q9BYM3, Q9BYM4	Gene names	ADAR, ADAR1, DSRAD, IFI4
Domain Architecture
Description	Double-stranded RNA-specific adenosine deaminase (EC 3.5.4.-) (DRADA) (136 kDa double-stranded RNA-binding protein) (P136) (K88DSRBP) (Interferon-inducible protein 4) (IFI-4 protein).

FOXD2_HUMAN
NC score	0.011108 (rank : 329)	θ value	1.81305 (rank : 42)
Query Neighborhood Hits	92	Target Neighborhood Hits	143	Shared Neighborhood Hits	9
SwissProt Accessions	O60548	Gene names	FOXD2, FKHL17, FREAC9
Domain Architecture
Description	Forkhead box protein D2 (Forkhead-related protein FKHL17) (Forkhead- related transcription factor 9) (FREAC-9).

SCG2_MOUSE
NC score	0.010985 (rank : 330)	θ value	5.27518 (rank : 73)
Query Neighborhood Hits	92	Target Neighborhood Hits	74	Shared Neighborhood Hits	2
SwissProt Accessions	Q03517, Q80Y79, Q9CW80	Gene names	Scg2, Chgc, Scg-2
Domain Architecture
Description	Secretogranin-2 precursor (Secretogranin II) (SgII) (Chromogranin C) [Contains: Secretoneurin (SN)].

CDT1_MOUSE
NC score	0.010097 (rank : 331)	θ value	6.88961 (rank : 77)
Query Neighborhood Hits	92	Target Neighborhood Hits	72	Shared Neighborhood Hits	3
SwissProt Accessions	Q8R4E9, Q8BUQ1, Q8BX29, Q8R3V0, Q8R4E8	Gene names	Cdt1, Ris2
Domain Architecture	No domain graphic available
Description	DNA replication factor Cdt1 (Double parked homolog) (DUP) (Retroviral insertion site 2 protein).

FOXL2_MOUSE
NC score	0.010076 (rank : 332)	θ value	5.27518 (rank : 72)
Query Neighborhood Hits	92	Target Neighborhood Hits	151	Shared Neighborhood Hits	10
SwissProt Accessions	O88470, Q8K3X9	Gene names	Foxl2, Pfrk
Domain Architecture	No domain graphic available
Description	Forkhead box protein L2 (Pituitary forkhead factor) (P-Frk).

CASL_HUMAN
NC score	0.010066 (rank : 333)	θ value	8.99809 (rank : 83)
Query Neighborhood Hits	92	Target Neighborhood Hits	259	Shared Neighborhood Hits	5
SwissProt Accessions	Q14511	Gene names	NEDD9, CASL
Domain Architecture
Description	Enhancer of filamentation 1 (HEF1) (CRK-associated substrate-related protein) (CAS-L) (CasL) (p105) (Protein NEDD9) (NY-REN-12 antigen).

ANR11_HUMAN
NC score	0.009246 (rank : 334)	θ value	1.81305 (rank : 40)
Query Neighborhood Hits	92	Target Neighborhood Hits	1289	Shared Neighborhood Hits	23
SwissProt Accessions	Q6UB99, Q6NTG1, Q6QMF8	Gene names	ANKRD11, ANCO1
Domain Architecture	No domain graphic available
Description	Ankyrin repeat domain-containing protein 11 (Ankyrin repeat-containing cofactor 1).

RPGF2_HUMAN
NC score	0.009015 (rank : 335)	θ value	2.36792 (rank : 53)
Query Neighborhood Hits	92	Target Neighborhood Hits	242	Shared Neighborhood Hits	3
SwissProt Accessions	Q9Y4G8	Gene names	RAPGEF2, KIAA0313, NRAPGEP, PDZGEF1
Domain Architecture	No domain graphic available
Description	Rap guanine nucleotide exchange factor 2 (Neural RAP guanine nucleotide exchange protein) (nRap GEP) (PDZ domain-containing guanine nucleotide exchange factor 1) (PDZ-GEF1) (RA-GEF).

OLIG2_HUMAN
NC score	0.008951 (rank : 336)	θ value	3.0926 (rank : 57)
Query Neighborhood Hits	92	Target Neighborhood Hits	84	Shared Neighborhood Hits	2
SwissProt Accessions	Q13516, Q86X04, Q9NZ14	Gene names	OLIG2, BHLHB1, PRKCBP2, RACK17
Domain Architecture
Description	Oligodendrocyte transcription factor 2 (Oligo2) (Basic helix-loop- helix protein class B 1) (Protein kinase C-binding protein RACK17) (Protein kinase C-binding protein 2).

CP007_HUMAN
NC score	0.008386 (rank : 337)	θ value	8.99809 (rank : 84)
Query Neighborhood Hits	92	Target Neighborhood Hits	85	Shared Neighborhood Hits	3
SwissProt Accessions	Q9Y2B5	Gene names	C16orf7, ATPBL
Domain Architecture	No domain graphic available
Description	Uncharacterized protein C16orf7 (Protein ATP-BL).

NCA11_MOUSE
NC score	0.007768 (rank : 338)	θ value	0.21417 (rank : 24)
Query Neighborhood Hits	92	Target Neighborhood Hits	661	Shared Neighborhood Hits	13
SwissProt Accessions	P13595, Q61949	Gene names	Ncam1, Ncam
Domain Architecture
Description	Neural cell adhesion molecule 1, 180 kDa isoform precursor (N-CAM 180) (NCAM-180).

PHF2_HUMAN
NC score	0.006974 (rank : 339)	θ value	4.03905 (rank : 66)
Query Neighborhood Hits	92	Target Neighborhood Hits	208	Shared Neighborhood Hits	7
SwissProt Accessions	O75151, Q8N3K2, Q9Y6N4	Gene names	PHF2, KIAA0662
Domain Architecture
Description	PHD finger protein 2 (GRC5).

SREC2_HUMAN
NC score	0.005135 (rank : 340)	θ value	1.06291 (rank : 38)
Query Neighborhood Hits	92	Target Neighborhood Hits	645	Shared Neighborhood Hits	11
SwissProt Accessions	Q96GP6, Q8IXF3, Q9BW74	Gene names	SCARF2, SREC2, SREPCR
Domain Architecture	No domain graphic available
Description	Scavenger receptor class F member 2 precursor (Scavenger receptor expressed by endothelial cells 2 protein) (SREC-II) (SRECRP-1).

GGA3_HUMAN
NC score	0.004963 (rank : 341)	θ value	8.99809 (rank : 86)
Query Neighborhood Hits	92	Target Neighborhood Hits	127	Shared Neighborhood Hits	8
SwissProt Accessions	Q9NZ52, Q15017, Q6IS16, Q9UJY3	Gene names	GGA3, KIAA0154
Domain Architecture
Description	ADP-ribosylation factor-binding protein GGA3 (Golgi-localized, gamma ear-containing, ARF-binding protein 3).

MEGF8_MOUSE
NC score	0.003118 (rank : 342)	θ value	8.99809 (rank : 89)
Query Neighborhood Hits	92	Target Neighborhood Hits	520	Shared Neighborhood Hits	6
SwissProt Accessions	P60882, Q80TR3, Q80V41, Q8BMN9, Q8JZW7, Q8K0J3	Gene names	Megf8, Egfl4
Domain Architecture
Description	Multiple epidermal growth factor-like domains 8 (EGF-like domain- containing protein 4) (Multiple EGF-like domain protein 4).

BMP2K_MOUSE
NC score	0.000523 (rank : 343)	θ value	2.36792 (rank : 48)
Query Neighborhood Hits	92	Target Neighborhood Hits	874	Shared Neighborhood Hits	3
SwissProt Accessions	Q91Z96, Q8C8L7	Gene names	Bmp2k, Bike
Domain Architecture
Description	BMP-2-inducible protein kinase (EC 2.7.11.1) (BIKe).

ZN668_MOUSE
NC score	-0.003664 (rank : 344)	θ value	5.27518 (rank : 75)
Query Neighborhood Hits	92	Target Neighborhood Hits	763	Shared Neighborhood Hits	2
SwissProt Accessions	Q8K2R5, Q3TEM2, Q3U7Y5, Q8C8B7	Gene names	Znf668, Zfp668
Domain Architecture	No domain graphic available
Description	Zinc finger protein 668.